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Error on install Linux R/4.2.0 #30

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stetner opened this issue Jul 21, 2022 · 2 comments
Open

Error on install Linux R/4.2.0 #30

stetner opened this issue Jul 21, 2022 · 2 comments

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@stetner
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stetner commented Jul 21, 2022

Getting this trying to install on:
CentOS Linux release 7.7.1908 (Core)
R Under development (unstable) (2022-02-17 r81751) -- "Unsuffered Consequences"

Any ideas?

Thanks,
Doug

library(rJava)
.jinit()
.jcall("java/lang/System", "S", "getProperty", "java.runtime.version")
[1] "1.8.0_252-b09"
BiocManager::install("aoles/RBioFormats")
Bioconductor version 3.15 (BiocManager 1.30.16), R Under development (unstable)
(2022-02-17 r81751)
Installing github package(s) 'aoles/RBioFormats'
Error: Failed to install 'unknown package' from GitHub:
Line starting 'Roxyg ...' is malformed!

@EsperanzaDai
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EsperanzaDai commented Sep 13, 2022

I got the same error. I also tried with remotes::install_github("aoles/RBioFormats") but got the same error.

I found another way of installation:
install.packages("https://github.com/aoles/RBioFormats/archive/refs/tags/Bio-Formats_6.1.0.tar.gz",
repos = NULL, type = "source")

Thanks!

@stetner
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stetner commented Sep 14, 2022

Works for me - thanks!

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