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Release v0.7.3
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@NicolasGensollen NicolasGensollen released this 18 Nov 13:42
· 428 commits to dev since this release
v0.7.3
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Learn about vigilant mode.

Clinica 0.7.3

Enhanced

  • [CI] Add caching support for unit tests
  • [CI] Refactor testing tools
  • [Dependencies] Bump lxml from 4.9.0 to 4.9.1
  • [Dependencies] Upgrade joblib to 1.2.0
  • [Dependencies] build: Install nipype up to version 1.8.2
  • [SurfStat] Pure python implementation
  • [IOTools] Fix warnings in merge-tsv
  • [Adni2BIDS] Deal with new data from ADNI3
  • [DWIPreprocessingUsingT1] Optimized disk usage of Pipeline DWIPreprocessingUsingT1
  • [IOTools] Allow setting a custom logging directory via environment variable
  • [IOTools] Center all modalities if no modality is specified
  • [Pipelines] Report uncompliant BIDS subjects

Added

  • [Converters] Add support for BIDS Readme
  • [IOTools] Extend the create-subjects-sessions iotool to CAPS directories
  • [IOTools] Add pet-linear to checks for missing processing

Fixed

  • [UKB2BIDS] Add error if data is not found or filtered
  • [DWIPreprocessingUsingT1] Add missing out_file parameter to DWIBiasCorrect
  • [Converters] UKB2BIDS drop directories labeled as unusable
  • [Adni2BIDS] Handle empty lines in create_subs_sess_list
  • [IOTools] Fix vox_to_world_space_method_1
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