-
Notifications
You must be signed in to change notification settings - Fork 30
271 lines (268 loc) · 16.8 KB
/
ci.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
name: Build and Test
on:
pull_request:
branches: [main, dev]
push:
jobs:
build-and-test:
strategy:
fail-fast: false
matrix:
os: [ubuntu-22.04]
gcc: [10]
python: ["3.9", "3.10", "3.11"]
venv: ["via-setup", "via-reqs"]
name: ${{ matrix.os }}-${{ matrix.gcc }}-${{ matrix.python }}-${{ matrix.venv }}
runs-on: ${{ matrix.os }}
env:
CC: gcc-${{ matrix.gcc }}
CXX: g++-${{ matrix.gcc }}
DFTRACER_BUILD_TYPE: "Debug"
DFTRACER_ENABLE: 1
DFTRACER_LOG_LEVEL: "INFO"
DLIO_EXEC: ${{ matrix.venv == 'via-setup' && 'dlio_benchmark' || 'python dlio_benchmark/main.py' }}
GOTCHA_DEBUG: 1
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
PYTHON_VER: ${{ matrix.python }}
RDMAV_FORK_SAFE: "1"
VENV_PATH: "/home/runner/work/.venv/${{ matrix.venv }}"
steps:
- name: Clear disc
run: |
sudo rm -rf /usr/share/dotnet
sudo rm -rf /opt/ghc
sudo rm -rf "/usr/local/share/boost"
sudo rm -rf "$AGENT_TOOLSDIRECTORY"
- name: Push checkout
if: github.event_name == 'push'
uses: actions/checkout@v3
- name: PR checkout
if: github.event_name == 'pull_request'
uses: actions/checkout@v3
with:
ref: ${{ github.event.pull_request.head.sha }}
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python }}
- name: Add current directory to PYTHONPATH
if: matrix.venv == 'via-reqs'
run: echo "PYTHONPATH=$(pwd):$PYTHONPATH" >> $GITHUB_ENV
- name: Cache install modules
id: cache-modules
uses: actions/cache@v3
with:
path: ${{ env.VENV_PATH }}
key: ${{ matrix.venv }}-gcc${{ matrix.gcc }}-python${{ matrix.python }}-${{ hashFiles('requirements.txt', 'setup.py') }}
- name: Install system dependencies
run: |
sudo apt update
sudo apt-get install -y $CC $CXX libc6 git
sudo apt-get install -y openmpi-bin openmpi-common libopenmpi-dev python3-dev
- name: Install DLIO via setup.py
if: matrix.venv == 'via-setup' && steps.cache-modules.outputs.cache-hit != 'true'
run: |
echo "venv: ${VENV_PATH} - gcc: $CC"
python -m venv ${VENV_PATH}
source ${VENV_PATH}/bin/activate
pip install --upgrade pip
pip install .[test]
- name: Install DLIO via requirements.txt
if: matrix.venv == 'via-reqs' && steps.cache-modules.outputs.cache-hit != 'true'
run: |
echo "venv: ${VENV_PATH} - gcc: $CC"
python -m venv ${VENV_PATH}
source ${VENV_PATH}/bin/activate
pip install --upgrade pip
pip install -r requirements.txt
- name: test_gen_data
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_gen_data[png-tensorflow] -v
mpirun -np 2 pytest -k test_gen_data[npz-tensorflow] -v
mpirun -np 2 pytest -k test_gen_data[jpeg-tensorflow] -v
mpirun -np 2 pytest -k test_gen_data[tfrecord-tensorflow] -v
mpirun -np 2 pytest -k test_gen_data[hdf5-tensorflow] -v
mpirun -np 2 pytest -k test_gen_data[indexed_binary-tensorflow] -v
mpirun -np 2 pytest -k test_gen_data[mmap_indexed_binary-tensorflow] -v
rm -rf data
- name: test_custom_storage_root_gen_data
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_storage_root_gen_data[png-tensorflow] -v
mpirun -np 2 pytest -k test_storage_root_gen_data[npz-tensorflow] -v
mpirun -np 2 pytest -k test_storage_root_gen_data[jpeg-tensorflow] -v
mpirun -np 2 pytest -k test_storage_root_gen_data[tfrecord-tensorflow] -v
mpirun -np 2 pytest -k test_storage_root_gen_data[hdf5-tensorflow] -v
mpirun -np 2 pytest -k test_storage_root_gen_data[indexed_binary-tensorflow] -v
mpirun -np 2 pytest -k test_storage_root_gen_data[mmap_indexed_binary-tensorflow] -v
rm -rf data
- name: test_train
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_train[png-tensorflow-tensorflow-True] -v
mpirun -np 2 pytest -k test_train[npz-tensorflow-tensorflow-True] -v
mpirun -np 2 pytest -k test_train[jpeg-tensorflow-tensorflow-True] -v
mpirun -np 2 pytest -k test_train[tfrecord-tensorflow-tensorflow-True] -v
mpirun -np 2 pytest -k test_train[hdf5-tensorflow-tensorflow-True] -v
mpirun -np 2 pytest -k test_train[csv-tensorflow-tensorflow-True] -v
mpirun -np 2 pytest -k test_train[png-pytorch-pytorch-True] -v
mpirun -np 2 pytest -k test_train[npz-pytorch-pytorch-True] -v
mpirun -np 2 pytest -k test_train[jpeg-pytorch-pytorch-True] -v
mpirun -np 2 pytest -k test_train[hdf5-pytorch-pytorch-True] -v
mpirun -np 2 pytest -k test_train[csv-pytorch-pytorch-True] -v
mpirun -np 2 pytest -k test_train[png-tensorflow-dali-True] -v
mpirun -np 2 pytest -k test_train[npz-tensorflow-dali-True] -v
mpirun -np 2 pytest -k test_train[jpeg-tensorflow-dali-True] -v
mpirun -np 2 pytest -k test_train[hdf5-tensorflow-dali-True] -v
mpirun -np 2 pytest -k test_train[csv-tensorflow-dali-True] -v
mpirun -np 2 pytest -k test_train[png-pytorch-dali-True] -v
mpirun -np 2 pytest -k test_train[npz-pytorch-dali-True] -v
mpirun -np 2 pytest -k test_train[jpeg-pytorch-dali-True] -v
mpirun -np 2 pytest -k test_train[hdf5-pytorch-dali-True] -v
mpirun -np 2 pytest -k test_train[csv-pytorch-dali-True] -v
mpirun -np 2 pytest -k test_train[indexed_binary-tensorflow-tensorflow-True] -v
mpirun -np 2 pytest -k test_train[indexed_binary-pytorch-pytorch-True] -v
mpirun -np 2 pytest -k test_train[indexed_binary-tensorflow-dali-True] -v
mpirun -np 2 pytest -k test_train[indexed_binary-pytorch-dali-True] -v
mpirun -np 2 pytest -k test_train[mmap_indexed_binary-tensorflow-tensorflow-True] -v
mpirun -np 2 pytest -k test_train[mmap_indexed_binary-pytorch-pytorch-True] -v
mpirun -np 2 pytest -k test_train[mmap_indexed_binary-tensorflow-dali-True] -v
mpirun -np 2 pytest -k test_train[mmap_indexed_binary-pytorch-dali-True] -v
mpirun -np 2 pytest -k test_train[png-tensorflow-tensorflow-False] -v
mpirun -np 2 pytest -k test_train[npz-tensorflow-tensorflow-False] -v
mpirun -np 2 pytest -k test_train[jpeg-tensorflow-tensorflow-False] -v
mpirun -np 2 pytest -k test_train[tfrecord-tensorflow-tensorflow-False] -v
mpirun -np 2 pytest -k test_train[hdf5-tensorflow-tensorflow-False] -v
mpirun -np 2 pytest -k test_train[csv-tensorflow-tensorflow-False] -v
mpirun -np 2 pytest -k test_train[png-pytorch-pytorch-False] -v
mpirun -np 2 pytest -k test_train[npz-pytorch-pytorch-False] -v
mpirun -np 2 pytest -k test_train[jpeg-pytorch-pytorch-False] -v
mpirun -np 2 pytest -k test_train[hdf5-pytorch-pytorch-False] -v
mpirun -np 2 pytest -k test_train[csv-pytorch-pytorch-False] -v
mpirun -np 2 pytest -k test_train[png-tensorflow-dali-False] -v
mpirun -np 2 pytest -k test_train[npz-tensorflow-dali-False] -v
mpirun -np 2 pytest -k test_train[jpeg-tensorflow-dali-False] -v
mpirun -np 2 pytest -k test_train[hdf5-tensorflow-dali-False] -v
mpirun -np 2 pytest -k test_train[csv-tensorflow-dali-False] -v
mpirun -np 2 pytest -k test_train[png-pytorch-dali-False] -v
mpirun -np 2 pytest -k test_train[npz-pytorch-dali-False] -v
mpirun -np 2 pytest -k test_train[jpeg-pytorch-dali-False] -v
mpirun -np 2 pytest -k test_train[hdf5-pytorch-dali-False] -v
mpirun -np 2 pytest -k test_train[csv-pytorch-dali-False] -v
mpirun -np 2 pytest -k test_train[indexed_binary-tensorflow-tensorflow-False] -v
mpirun -np 2 pytest -k test_train[indexed_binary-pytorch-pytorch-False] -v
mpirun -np 2 pytest -k test_train[indexed_binary-tensorflow-dali-False] -v
mpirun -np 2 pytest -k test_train[indexed_binary-pytorch-dali-False] -v
mpirun -np 2 pytest -k test_train[mmap_indexed_binary-tensorflow-tensorflow-False] -v
mpirun -np 2 pytest -k test_train[mmap_indexed_binary-pytorch-pytorch-False] -v
mpirun -np 2 pytest -k test_train[mmap_indexed_binary-tensorflow-dali-False] -v
mpirun -np 2 pytest -k test_train[mmap_indexed_binary-pytorch-dali-False] -v
rm -rf data
- name: test_custom_storage_root_train
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_custom_storage_root_train[png-tensorflow] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[npz-tensorflow] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[jpeg-tensorflow] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[tfrecord-tensorflow] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[hdf5-tensorflow] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[csv-tensorflow] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[png-pytorch] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[npz-pytorch] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[jpeg-pytorch] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[hdf5-pytorch] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[csv-pytorch] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[indexed_binary-tensorflow] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[indexed_binary-pytorch] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[mmap_indexed_binary-tensorflow] -v
mpirun -np 2 pytest -k test_custom_storage_root_train[mmap_indexed_binary-pytorch] -v
rm -rf data
- name: test_checkpoint_epoch
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_checkpoint_epoch[tensorflow-1024-optimizers0-2-layer_params0-all_ranks] -v
mpirun -np 2 pytest -k test_checkpoint_epoch[pytorch-1024-optimizers1-2-layer_params1-all_ranks] -v
mpirun -np 2 pytest -k test_checkpoint_epoch[tensorflow-1024-optimizers2-2-layer_params2-rank_zero] -v
mpirun -np 2 pytest -k test_checkpoint_epoch[pytorch-1024-optimizers3-2-layer_params3-rank_zero] -v
mpirun -np 2 pytest -k test_checkpoint_epoch[tensorflow-1024-optimizers4-1-layer_params4-all_ranks] -v
mpirun -np 2 pytest -k test_checkpoint_epoch[pytorch-1024-optimizers5-1-layer_params5-all_ranks] -v
rm -rf data
- name: test_checkpoint_step
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_checkpoint_step -v
- name: test_eval
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_eval -v
- name: test_multi_threads
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_multi_threads[tensorflow-0] -v
mpirun -np 2 pytest -k test_multi_threads[tensorflow-1] -v
mpirun -np 2 pytest -k test_multi_threads[tensorflow-2] -v
mpirun -np 2 pytest -k test_multi_threads[pytorch-0] -v
mpirun -np 2 pytest -k test_multi_threads[pytorch-1] -v
mpirun -np 2 pytest -k test_multi_threads[pytorch-2] -v
rm -rf data
- name: test-pytorch-multiprocessing-context
run: |
source ${VENV_PATH}/bin/activate
mpirun -np 2 pytest -k test_pytorch_multiprocessing_context[0-None] -v
mpirun -np 2 pytest -k test_pytorch_multiprocessing_context[1-fork] -v
mpirun -np 2 pytest -k test_pytorch_multiprocessing_context[2-forkserver] -v
mpirun -np 2 pytest -k test_pytorch_multiprocessing_context[2-spawn] -v
rm -rf data
- name: test_subset
run: |
source ${VENV_PATH}/bin/activate
rm -rf output data checkpoints
mpirun -np 2 pytest -k test_subset -v
rm -rf data
- name: test-tf-loader-tfrecord
run: |
source ${VENV_PATH}/bin/activate
rm -rf output data checkpoints
mpirun -np 2 ${DLIO_EXEC} workload=resnet50_tf ++workload.dataset.num_files_train=64 ++workload.workflow.train=False ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=4 ++workload.dataset.num_samples_per_file=16
mpirun -np 2 ${DLIO_EXEC} workload=resnet50_tf ++workload.dataset.num_files_train=64 ++workload.workflow.train=True ++workload.workflow.generate_data=False ++workload.dataset.num_files_train=4 ++workload.dataset.num_samples_per_file=16 ++workload.train.computation_time=0.01 ++workload.train.epochs=1
rm -rf data
- name: test-torch-loader-npz
run: |
source ${VENV_PATH}/bin/activate
rm -rf output data checkpoints
mpirun -np 2 ${DLIO_EXEC} workload=unet3d_a100 ++workload.train.computation_time=0.05 ++workload.evaluation.eval_time=0.01 ++workload.workflow.train=False ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=8 ++workload.dataset.num_files_eval=8 ++workload.reader.read_threads=2 ++workload.dataset.record_length=4096 ++workload.dataset.record_length_stdev=0
mpirun -np 2 ${DLIO_EXEC} workload=unet3d_a100 ++workload.train.computation_time=0.05 ++workload.evaluation.eval_time=0.01 ++workload.train.epochs=1 ++workload.workflow.train=True ++workload.workflow.generate_data=False ++workload.dataset.num_files_train=8 ++workload.dataset.num_files_eval=8 ++workload.reader.read_threads=0 ++workload.dataset.record_length=4096 ++workload.dataset.record_length_stdev=0
rm -rf data
- name: test-tf-loader-npz
run: |
source ${VENV_PATH}/bin/activate
rm -rf output data checkpoints
mpirun -np 2 ${DLIO_EXEC} workload=unet3d_a100 ++workload.framework=tensorflow ++workload.data_reader.data_loader=tensorflow ++workload.train.computation_time=0.05 ++workload.evaluation.eval_time=0.01 ++workload.train.epochs=2 ++workload.workflow.train=False ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=16 ++workload.dataset.num_files_eval=16 ++workload.reader.read_threads=2 ++workload.dataset.record_length=4096 ++workload.dataset.record_length_stdev=0
mpirun -np 2 ${DLIO_EXEC} workload=unet3d_a100 ++workload.framework=tensorflow ++workload.data_reader.data_loader=tensorflow ++workload.train.computation_time=0.05 ++workload.evaluation.eval_time=0.01 ++workload.train.epochs=2 ++workload.workflow.train=True ++workload.workflow.generate_data=False ++workload.dataset.num_files_train=16 ++workload.dataset.num_files_eval=16 ++workload.reader.read_threads=2 ++workload.dataset.record_length=4096 ++workload.dataset.record_length_stdev=0
rm -rf data
- name: test_unet3d
run: |
source ${VENV_PATH}/bin/activate
rm -rf output data checkpoints
mpirun -np 2 ${DLIO_EXEC} workload=unet3d_a100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=42
mpirun -np 2 ${DLIO_EXEC} workload=unet3d_h100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=42
mpirun -np 2 ${DLIO_EXEC} workload=unet3d_h100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=42 ++workload.dataset.format=synthetic
rm -rf data
- name: test_resnet50
run: |
source ${VENV_PATH}/bin/activate
rm -rf output data checkpoints
mpirun -np 2 ${DLIO_EXEC} workload=resnet50_a100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=8 ++workload.reader.read_threads=1
mpirun -np 2 ${DLIO_EXEC} workload=resnet50_h100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=8 ++workload.reader.read_threads=1
mpirun -np 2 ${DLIO_EXEC} workload=resnet50_h100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=8 ++workload.reader.read_threads=1 ++workload.dataset.format=synthetic
rm -rf data
- name: test_cosmoflow
run: |
source ${VENV_PATH}/bin/activate
rm -rf output data checkpoints
mpirun -np 2 ${DLIO_EXEC} workload=cosmoflow_a100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=16
mpirun -np 2 ${DLIO_EXEC} workload=cosmoflow_h100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=16
mpirun -np 2 ${DLIO_EXEC} workload=cosmoflow_h100 ++workload.workflow.generate_data=True ++workload.dataset.num_files_train=16 ++workload.dataset.format=synthetic
rm -rf data