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The lessons use the [Software Carpentry]({{ site.swc_site }}) and [Data Carpentry]({{ site.dc_site }}) lesson template and are partially based on the [Data Carpentry Genomics lesson]({{ site.dc_site }}).

Schedule

1. Thursday: Setup
2. Tuesday: Intro cloud computing and shell, assembly, protein prediction

Data

Escherichia coli strain K-12 holds a key position as a model organism in studies of molecular biology, biochemistry, genetics and biotechnology. We will be using reads available from the European Nucleotide Archive. In addition, we will be using a pre-assembled genome from Staphylococcus aureus subsp. aureus USA300_FPR3757.

We are using this collaborative document. A cheatsheet can be found here.

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