From deb8aedaea0d961a6ed16b7b4b2c74e76279b15b Mon Sep 17 00:00:00 2001
From: Lukas Forer <lukas.forer@i-med.ac.at>
Date: Sun, 11 Feb 2024 11:50:58 +0100
Subject: [PATCH] Add nf-commons and nf-httpfs to make path compatible with
 Nextflow

---
 pom.xml                                            | 14 ++++++++++++++
 .../nf/test/lang/extensions/GlobalMethods.java     |  3 ++-
 2 files changed, 16 insertions(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 73cbd4bf..0d769dc2 100644
--- a/pom.xml
+++ b/pom.xml
@@ -118,6 +118,20 @@
 		    <version>1.4.11</version>
 		</dependency>
 
+		<!-- https://mvnrepository.com/artifact/io.nextflow/nf-commons -->
+		<dependency>
+			<groupId>io.nextflow</groupId>
+			<artifactId>nf-commons</artifactId>
+			<version>24.01.0-edge</version>
+		</dependency>
+
+		<!-- https://mvnrepository.com/artifact/io.nextflow/nf-httpfs -->
+		<dependency>
+			<groupId>io.nextflow</groupId>
+			<artifactId>nf-httpfs</artifactId>
+			<version>24.01.0-edge</version>
+		</dependency>
+
 	</dependencies>
 
 	<build>
diff --git a/src/main/java/com/askimed/nf/test/lang/extensions/GlobalMethods.java b/src/main/java/com/askimed/nf/test/lang/extensions/GlobalMethods.java
index 84b14424..9e411e5e 100644
--- a/src/main/java/com/askimed/nf/test/lang/extensions/GlobalMethods.java
+++ b/src/main/java/com/askimed/nf/test/lang/extensions/GlobalMethods.java
@@ -8,6 +8,7 @@
 import groovy.lang.Closure;
 import junit.framework.AssertionFailedError;
 
+import nextflow.file.FileHelper;
 import org.codehaus.groovy.runtime.powerassert.PowerAssertionError;
 
 import static org.hamcrest.MatcherAssert.assertThat;
@@ -20,7 +21,7 @@ public static File file(String filename) {
 	}
 
 	public static Path path(String filename) {
-		return Paths.get(filename);
+		return FileHelper.asPath(filename);
 	}
 	
 	public static void with(Object context, Closure closure) {