From e4a413a0b92a92e3a38e74e24138839d33616755 Mon Sep 17 00:00:00 2001 From: seppinho Date: Fri, 26 Aug 2022 15:38:22 +0200 Subject: [PATCH] Describe tracing option --- docs/cli/test.md | 3 +++ docs/configuration.md | 2 ++ 2 files changed, 5 insertions(+) diff --git a/docs/cli/test.md b/docs/cli/test.md index e777efce..d912cb13 100644 --- a/docs/cli/test.md +++ b/docs/cli/test.md @@ -13,6 +13,9 @@ nf-test test [] #### `--debug` The debug parameter prints out all available output channels which can be accessed in the `then` clause. +#### `--without-trace` +The Linux tool `procps` is required to run Nextflow tracing. In case your container does not support this tool, you can also run nf-test without tracing. Please note that the `workflow.trace` are not available when running it with this flag. + ## Examples Run all tests: diff --git a/docs/configuration.md b/docs/configuration.md index 0d5b0650..f63e24bd 100644 --- a/docs/configuration.md +++ b/docs/configuration.md @@ -19,6 +19,8 @@ config { configFile "tests/nextflow.config" // run all test with the defined docker profile from the main nextflow.config profile "docker" + // disable tracing options in case container does not include `procps` Linux tool. + withTrace = false } ```