You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'm using a custom plugin with nf-test right now, to capture md5sum from complex data (Nifti-gz, it require a dedicated reader to get consistent md5 from the data inside the file). Nifti being a ND-image format, processing can get quite intensive and RAM can get filled before the Java garbage collector has time to pass.
I was wondeing why my tests tend to get killed halfway. Note I am working in a container and docker enforces resource limits, but I hadn't configured anything that could potentially go over those. Then I discovered the infamous line 54 in the nf-test executable, where there is a -Xmx10g, and I don't have that much RAM. I changed the value to a lower one - 6g in my case - and it works !
Now it's quite a pain to go and change that line everytime the executable changes. Would it be possible to add an option to set that value ? Or default to a standard java way of setting it like the JAVA_TOOL_OPTIONS or something ?
The text was updated successfully, but these errors were encountered:
I'm using a custom plugin with nf-test right now, to capture md5sum from complex data (Nifti-gz, it require a dedicated reader to get consistent md5 from the data inside the file). Nifti being a ND-image format, processing can get quite intensive and RAM can get filled before the Java garbage collector has time to pass.
I was wondeing why my tests tend to get killed halfway. Note I am working in a container and docker enforces resource limits, but I hadn't configured anything that could potentially go over those. Then I discovered the infamous line 54 in the nf-test executable, where there is a
-Xmx10g
, and I don't have that much RAM. I changed the value to a lower one - 6g in my case - and it works !Now it's quite a pain to go and change that line everytime the executable changes. Would it be possible to add an option to set that value ? Or default to a standard java way of setting it like the JAVA_TOOL_OPTIONS or something ?
The text was updated successfully, but these errors were encountered: