AttributeError: module 'auton_survival' has no attribute 'plot_kaplanmeier'

[sbpatel2009]

Here is the code (directly from the notebooks:

# Plot the phenogroup specific Kaplan-Meier survival estimate.
auton_survival.reporting.plot_kaplanmeier(outcomes, groups=phenotypes)

Here is the error message:

> ---------------------------------------------------------------------------
> AttributeError                            Traceback (most recent call last)
> [~\AppData\Local\Temp\ipykernel_20180\1703960961.py](https://file+.vscode-resource.vscode-cdn.net/c%3A/Users/Snehal%20Patel/OneDrive%20-%20SimBioSys/Hack-a-thon/Hack-a-thon%202023/Code_and_Data/~/AppData/Local/Temp/ipykernel_20180/1703960961.py) in 
>       1 # Plot the phenogroup specific Kaplan-Meier survival estimate.
> ----> 2 auton_survival.reporting.plot_kaplanmeier(outcomes, groups=phenotypes)
> 
> AttributeError: module 'auton_survival' has no attribute 'reporting'

I tried importing the function first, but I get the same error:

from auton_survival.reporting import plot_kaplanmeier

> ---------------------------------------------------------------------------
> ModuleNotFoundError                       Traceback (most recent call last)
> [~\AppData\Local\Temp\ipykernel_20180\4279169460.py](https://file+.vscode-resource.vscode-cdn.net/c%3A/Users/Snehal%20Patel/OneDrive%20-%20SimBioSys/Hack-a-thon/Hack-a-thon%202023/Code_and_Data/~/AppData/Local/Temp/ipykernel_20180/4279169460.py) in 
> ----> 1 from auton_survival.reporting import plot_kaplanmeier
> 
> ModuleNotFoundError: No module named 'auton_survival.reporting'

[chiragnagpal]

hmm are you using pip install to install the package? We don't support pip yet have you tried cloning the package and using directly?

[sbpatel2009]

Got it. I did use pip, so I'll try cloning directly, as you suggested. Thanks for propt reply!

[matteo4diani]

hmm are you using pip install to install the package? We don't support pip yet have you tried cloning the package and using directly?

Just a heads up: we now support pip installs via pip install auton-survival
https://pypi.org/project/auton-survival/

[sbpatel2009]

Thanks for the heads up! Really great to have the ability to pip install :)

…

On Thu, Nov 9, 2023 at 9:44 AM Matteo Fordiani ***@***.***> wrote: hmm are you using pip install to install the package? We don't support pip yet have you tried cloning the package and using directly? Just a heads up: we now support pip installs via pip install auton-survival https://pypi.org/project/auton-survival/ — Reply to this email directly, view it on GitHub <#126 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AGAPI634NNASRZO3S7HNWWDYDT26VAVCNFSM6AAAAAA3KLHQL6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGA3TONBRHA> . You are receiving this because you authored the thread.Message ID: ***@***.***>