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AnalysisUI.py
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AnalysisUI.py
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from PyQt5.QtWidgets import *
from FormattingStrings import *
from PyQt5.QtCore import *
from PyQt5.QtGui import QIcon
import matplotlib.pyplot as plt
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolbar
class AnalysisUI:
def create_ui(self, AnalysisGUI):
self.scroll_area = QScrollArea(AnalysisGUI)
self.scroll_area.setWidgetResizable(True)
self.central_widget = QWidget()
self.grid_layout = QGridLayout(self.central_widget)
self.scroll_area.setWidget(self.central_widget)
self.picker_date = QDateEdit(calendarPopup=True)
self.picker_date.setDisplayFormat(date_format_string)
self.picker_date.setDate(QDate.currentDate())
self.cb_script = QComboBox()
self.cb_data = QComboBox()
self.button_refresh_data = QPushButton()
self.button_refresh_data.setText("Refresh")
self.button_refresh_data.setIcon(QIcon("refresh.png"))
self.checkbox_imaging_calibration = QCheckBox("Imaging Calibration")
self.checkbox_adjust_amplitudes = QCheckBox(
"Amplitude Adjustment Feedback")
self.checkbox_adjust_probe = QCheckBox("Shift Probe")
self.checkbox_shot_alert = QCheckBox("Shot Alerts")
self.checkbox_ignore_first_shot = QCheckBox("Ignore First Shot")
self.button_reset_mail = QPushButton("Reset Mail")
self.checkbox_probe_threhold = QCheckBox("Probe Thresholding")
self.probe_threshold_label = QLabel("Probe Threshold: ")
self.probe_threshold = QSlider(Qt.Horizontal)
self.probe_threshold.setRange(0, 100)
self.probe_threshold.setValue(0)
self.probe_threshold_value_label = QLabel("0.000")
self.label_folder_name = QLabel(f"{analysis_folder_string}: ")
self.parameters_label = QLabel(f"Parameters: ")
self.parameters_lineedit = QLineEdit()
self.trap_selector_label = QLabel(f"Traps: ")
self.index_label = QLabel(f"Index: ")
self.index_lineedit = QLineEdit()
self.sites_label = QLabel(f"Sites: ")
self.rois_selection = []
n_columns = 12
self.go_button = QPushButton("Go")
row_num = 0
self.date_picker_layout = QHBoxLayout()
self.date_picker_layout.addWidget(self.picker_date)
self.date_picker_layout.addWidget(self.cb_script)
self.date_picker_layout.addWidget(self.cb_data)
self.date_picker_layout.addWidget(
self.label_folder_name
)
self.date_picker_layout.addWidget(
self.button_refresh_data
)
self.grid_layout.addLayout(self.date_picker_layout, row_num, 0, 1, 6)
row_num = row_num + 1
self.option_selector_layout = QHBoxLayout()
self.option_selector_layout.addWidget(
self.checkbox_imaging_calibration)
self.option_selector_layout.addWidget(
self.checkbox_adjust_amplitudes)
self.option_selector_layout.addWidget(self.checkbox_ignore_first_shot)
self.option_selector_layout.addWidget(self.checkbox_probe_threhold)
self.option_selector_layout.addWidget(self.probe_threshold_label)
self.option_selector_layout.addWidget(self.probe_threshold)
self.option_selector_layout.addWidget(self.probe_threshold_value_label)
self.option_selector_layout.addWidget(self.checkbox_adjust_probe)
self.option_selector_layout.addWidget(self.checkbox_shot_alert)
self.option_selector_layout.addWidget(self.button_reset_mail)
self.grid_layout.addLayout(
self.option_selector_layout, row_num, 0, 1, n_columns - 1)
row_num = row_num + 1
self.set_roi_selector(row_num)
row_num += 1
# Add in parameter field
self.parameter_selector_layout = QHBoxLayout()
self.parameter_selector_layout.addWidget(self.parameters_label)
self.parameter_selector_layout.addWidget(self.parameters_lineedit)
# Choose traps to analyze
self.parameter_selector_layout.addWidget(self.trap_selector_label)
self.grid_layout.addLayout(
self.parameter_selector_layout, row_num, 0, 1, self.n_columns)
# self.grid_layout.addWidget(self.parameters_label, row_num, 0, 1, 1)
# self.grid_layout.addWidget(self.parameters_lineedit, row_num, 1, 1, 2)
row_num += 1
self.f2_threshold_checkbox = QCheckBox("F = 2 Thresholding")
self.f2_threshold_input = QLineEdit("")
self.checkbox_normalize_correlations = QCheckBox(
"Normalize Correlation")
self.threshold_layout = QHBoxLayout()
self.threshold_layout.addWidget(self.f2_threshold_checkbox)
self.threshold_layout.addWidget(self.f2_threshold_input)
self.threshold_layout.addWidget(self.index_label)
self.threshold_layout.addWidget(self.index_lineedit)
self.threshold_layout.addWidget(self.checkbox_normalize_correlations)
self.grid_layout.addLayout(
self.threshold_layout, row_num, 0, 1, self.n_columns)
row_num = row_num + 1
self.figure_1d, self.axis_1d = plt.subplots()
self.canvas_1d = FigureCanvas(self.figure_1d)
self.toolbar_1d = NavigationToolbar(self.canvas_1d, self)
self.figure_2d, self.axis_2d = plt.subplots()
self.canvas_2d = FigureCanvas(self.figure_2d)
self.toolbar_2d = NavigationToolbar(self.canvas_2d, self)
self.figure_corr, self.axis_corr = plt.subplots(1, 2)
self.canvas_corr = FigureCanvas(self.figure_corr)
self.toolbar_corr = NavigationToolbar(self.canvas_corr, self)
self.figure_phase, _ = plt.subplots()
self.canvas_phase = FigureCanvas(self.figure_phase)
self.toolbar_phase = NavigationToolbar(self.canvas_phase, self)
self.figure_probe, _ = plt.subplots()
self.canvas_probe = FigureCanvas(self.figure_probe)
self.toolbar_probe = NavigationToolbar(self.canvas_probe, self)
self.figure_6, _ = plt.subplots()
self.canvas_6 = FigureCanvas(self.figure_6)
self.toolbar_6 = NavigationToolbar(self.canvas_6, self)
self.grid_layout.addWidget(
self.toolbar_1d, row_num, 0, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.canvas_1d, row_num + 1, 0, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.toolbar_2d, row_num, self.n_columns / 2, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.canvas_2d, row_num + 1, self.n_columns / 2, 1, self.n_columns / 2)
row_num = row_num + 2
self.grid_layout.addWidget(
self.toolbar_corr, row_num, 0, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.canvas_corr, row_num + 1, 0, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.toolbar_phase, row_num, self.n_columns / 2, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.canvas_phase, row_num + 1, self.n_columns / 2, 1, self.n_columns / 2)
row_num = row_num + 2
self.grid_layout.addWidget(
self.toolbar_probe, row_num, 0, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.canvas_probe, row_num + 1, 0, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.toolbar_6, row_num, self.n_columns / 2, 1, self.n_columns / 2)
self.grid_layout.addWidget(
self.canvas_6, row_num + 1, self.n_columns / 2, 1, self.n_columns / 2)
self.canvas_1d.setFixedHeight(600)
self.canvas_corr.setFixedHeight(600)
self.canvas_probe.setFixedHeight(600)
self.canvas_2d.setFixedHeight(600)
row_num += 2
self.reset_layout = QHBoxLayout()
self.reset_amplitude_compensation_button = QPushButton(
"Reset Amplitude Compensation - NOT IMPLEMENTED YET")
self.reset_layout.addWidget(self.reset_amplitude_compensation_button)
self.grid_layout.addLayout(
self.threshold_layout, row_num, 0, 1, self.n_columns)
AnalysisGUI.setCentralWidget(self.scroll_area)
QMetaObject.connectSlotsByName(AnalysisGUI)
def set_roi_selector(self, row_num=2):
self.n_columns = 12
self.roi_selector_label = QLabel("ROIs to exclude:")
self.roi_selector_layout = QHBoxLayout()
self.grid_layout.addLayout(
self.roi_selector_layout, row_num, 0, 1, self.n_columns)
rois = sorted(list(fancy_titles.keys()))
self.roi_checkboxes = [QCheckBox(roi) for roi in rois]
self.roi_selector_layout.addWidget(self.roi_selector_label)
for i in range(len(self.roi_checkboxes)):
self.roi_selector_layout.addWidget(
self.roi_checkboxes[i])
def check_roi_boxes(self):
self.rois_to_exclude = [i.text()
for i in self.roi_checkboxes if i.isChecked()]
return