diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index b20a9f8..ded65c9 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -1,5 +1,5 @@ # This workflow will install Python dependencies and run tests on -# windows and linux systems with a variety of Python versions +# Windows and Linux systems with a variety of Python versions # For more information see: # https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions @@ -7,78 +7,129 @@ name: tests on: - push: - pull_request: - workflow_dispatch: - schedule: # only upstream, won't trigger on forks! - - cron: '0 0 * * *' # daily + push: + pull_request: + workflow_dispatch: + schedule: # only upstream, won't trigger on forks! + - cron: '0 0 * * *' # daily jobs: - build: - name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 - runs-on: ${{ matrix.os }} - strategy: - matrix: - python-version: [ '3.8', '3.9', '3.10' ] - os: ["ubuntu-latest"] - ymlfile: ["environment.yml"] - include: - - os: "windows-latest" - python-version: "3.10" - ymlfile: "environment.yml" - steps: - - uses: actions/checkout@v2 - with: - submodules: true - - uses: conda-incubator/setup-miniconda@v3 - with: - miniconda-version: "latest" - auto-update-conda: true - python-version: ${{ matrix.python-version }} - environment-file: ${{ matrix.ymlfile }} - mamba-version: "*" - activate-environment: qa4sm_reader # todo: must match with name in environment.yml - auto-activate-base: false - - name: Print environment infos - shell: bash -l {0} - run: | - conda info -a - conda list - pip list - which pip - which python - - name: Export Environment - shell: bash -l {0} - run: | - mkdir -p artifacts - filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml - conda env export --no-builds | grep -v "prefix" > artifacts/$filename - - name: Upload Artifacts - uses: actions/upload-artifact@v4 - with: - name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} - path: artifacts/* - - name: Install package and test - shell: bash -l {0} - run: | - pip install -e . - pytest - - name: Upload Coverage - shell: bash -l {0} - run: | - pip install coveralls && coveralls --service=github - env: - GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} - COVERALLS_FLAG_NAME: ${{ matrix.python-version }} - COVERALLS_PARALLEL: true - coveralls: - name: Submit Coveralls 👚 - needs: build - runs-on: ubuntu-latest - container: python:3-slim - steps: - - name: Finished - run: | - pip3 install --upgrade coveralls && coveralls --service=github --finish - env: - GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + linux-tests: + name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 + runs-on: ${{ matrix.os }} + strategy: + matrix: + python-version: ['3.8', '3.9', '3.10'] + os: ['ubuntu-latest'] + ymlfile: ['environment.yml'] + steps: + - uses: actions/checkout@v2 + with: + submodules: true + - uses: conda-incubator/setup-miniconda@v3 + with: + miniconda-version: 'latest' + auto-update-conda: true + python-version: ${{ matrix.python-version }} + environment-file: ${{ matrix.ymlfile }} + mamba-version: '*' + activate-environment: qa4sm_reader # todo: must match with name in environment.yml + auto-activate-base: false + - name: Print environment infos + shell: bash -l {0} + run: | + conda info -a + conda list + pip list + which pip + which python + - name: Export Environment + shell: bash -l {0} + run: | + mkdir -p artifacts + filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml + conda env export --no-builds | grep -v "prefix" > artifacts/$filename + - name: Upload Artifacts + uses: actions/upload-artifact@v4 + with: + name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} + path: artifacts/* + - name: Install package and test + shell: bash -l {0} + run: | + pip install -e . + pytest + - name: Upload Coverage + shell: bash -l {0} + run: | + pip install coveralls && coveralls --service=github + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + COVERALLS_FLAG_NAME: ${{ matrix.python-version }} + COVERALLS_PARALLEL: true + + windows-tests: + name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 + runs-on: ${{ matrix.os }} + strategy: + matrix: + python-version: ['3.10'] + os: ['windows-latest'] + ymlfile: ['environment.yml'] + steps: + - uses: actions/checkout@v2 + with: + submodules: true + - uses: conda-incubator/setup-miniconda@v3 + with: + miniconda-version: 'latest' + auto-update-conda: true + python-version: ${{ matrix.python-version }} + environment-file: ${{ matrix.ymlfile }} + activate-environment: qa4sm_reader # todo: must match with name in environment.yml + auto-activate-base: false + - name: Print environment infos + shell: cmd + run: | + conda info -a + conda list + pip list + where pip + where python + - name: Export Environment + shell: cmd + run: | + mkdir artifacts + set filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml + conda env export --no-builds | findstr /v "prefix" > artifacts/%filename% + - name: Upload Artifacts + uses: actions/upload-artifact@v4 + with: + name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} + path: artifacts/* + - name: Install package and test + shell: cmd + run: | + conda activate qa4sm_reader + pip install -e . + pytest + - name: Upload Coverage + shell: cmd + run: | + pip install coveralls && coveralls --service=github + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + COVERALLS_FLAG_NAME: ${{ matrix.python-version }} + COVERALLS_PARALLEL: true + + coveralls: + name: Submit Coveralls 👚 + needs: [linux-tests, windows-tests] + runs-on: ubuntu-latest + container: python:3-slim + steps: + - name: Finished + run: | + pip3 install --upgrade coveralls && coveralls --service=github --finish + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/.gitignore b/.gitignore index 223f0c0..3f3f6f3 100644 --- a/.gitignore +++ b/.gitignore @@ -71,3 +71,4 @@ tests/test_data/out/* */_local_scripts/* .coverage* .artifacts/* +.vscode