From 4413ec4ba877fe3d49f12bd4a0077da1e081be72 Mon Sep 17 00:00:00 2001
From: nfb2021 <nicolas.bader@geo.tuwien.ac.at>
Date: Mon, 7 Oct 2024 16:19:07 +0200
Subject: [PATCH] solving micromamba env creation

---
 .github/workflows/test.yml | 81 +++++++++++++++++++++++++++++++++-----
 1 file changed, 72 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 3029c8c..32b9a9f 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -11,7 +11,7 @@ on:
         - cron: '0 0 * * *' # daily
 
 jobs:
-    build:
+    linux-tests:
         name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍
         runs-on: ${{ matrix.os }}
         strategy:
@@ -19,11 +19,6 @@ jobs:
                 python-version: ['3.8', '3.9', '3.10']
                 os: ['ubuntu-latest']
                 ymlfile: ['environment.yml']
-                include:
-                    - os: 'windows-latest'
-                      python-version: '3.10'
-                      ymlfile: 'environment.yml'
-
         steps:
             - uses: actions/checkout@v2
               with:
@@ -39,13 +34,13 @@ jobs:
               shell: bash -l {0}
               run: |
                   micromamba shell init -s bash -p ~/micromamba/envs/qa4sm_reader
-                  micromamba create -y --name qa4sm_reader python=${{ matrix.python-version }}  # Explicitly create the environment if not already created
                   echo "source ~/micromamba/etc/profile.d/micromamba.sh" >> ~/.bashrc
 
-            - name: Activate environment
+            - name: Create and activate environment
               shell: bash -l {0}
               run: |
                   source ~/micromamba/etc/profile.d/micromamba.sh
+                  micromamba create -y --name qa4sm_reader --file ${{ matrix.ymlfile }}
                   micromamba activate qa4sm_reader
 
             - name: Print environment infos
@@ -85,9 +80,77 @@ jobs:
                   COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
                   COVERALLS_PARALLEL: true
 
+    windows-tests:
+        name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍
+        runs-on: ${{ matrix.os }}
+        strategy:
+            matrix:
+                python-version: ['3.10']
+                os: ['windows-latest']
+                ymlfile: ['environment.yml']
+        steps:
+            - uses: actions/checkout@v2
+              with:
+                  submodules: true
+
+            - uses: mamba-org/setup-micromamba@v1
+              with:
+                  micromamba-version: 'latest'
+                  environment-file: ${{ matrix.ymlfile }} # Ensure the env file is correctly defined
+                  micromamba-root-path: ~/micromamba # Optional, where to install micromamba
+
+            - name: Initialize micromamba environment
+              shell: cmd
+              run: |
+                  micromamba shell init -s cmd -p %USERPROFILE%\micromamba\envs\qa4sm_reader
+
+            - name: Create and activate environment
+              shell: cmd
+              run: |
+                  call %USERPROFILE%\micromamba\etc\profile.d\micromamba.cmd
+                  micromamba create -y --name qa4sm_reader --file %USERPROFILE%\micromamba\envs\qa4sm_reader\${{ matrix.ymlfile }}
+                  micromamba activate qa4sm_reader
+
+            - name: Print environment infos
+              shell: cmd
+              run: |
+                  micromamba info
+                  micromamba list
+                  pip list
+                  where pip
+                  where python
+
+            - name: Export Environment
+              shell: cmd
+              run: |
+                  mkdir artifacts
+                  set filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml
+                  micromamba env export --name qa4sm_reader > artifacts\%filename%
+
+            - name: Upload Artifacts
+              uses: actions/upload-artifact@v4
+              with:
+                  name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }}
+                  path: artifacts\*
+
+            - name: Install package and test
+              shell: cmd
+              run: |
+                  pip install -e .
+                  pytest
+
+            - name: Upload Coverage
+              shell: cmd
+              run: |
+                  pip install coveralls && coveralls --service=github
+              env:
+                  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+                  COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
+                  COVERALLS_PARALLEL: true
+
     coveralls:
         name: Submit Coveralls 👚
-        needs: build
+        needs: [linux-tests, windows-tests]
         runs-on: ubuntu-latest
         container: python:3-slim
         steps: