ability to inject source data for codings

[barabo]

In FHIR-to-OMOP mapping, sometimes the source code-system code and vocabulary_concept_id can be inserted into optional columns of the destination table.

Since I already have an option to inject the concept details into a coding, it makes sense to also be able to include a source or vocabulary item.

Today I have this:

  "type": [
    {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "185349003",
          "display": "Encounter for check up (procedure)",
          "concept": {
            "concept_id": 3476171,
            "domain_id": "Observation",
            "concept_class_id": "Procedure"
          }
        }
      ],
      "text": "Encounter for check up (procedure)"
    }

What I want looks like this:

  "type": [
    {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "185349003",
          "display": "Encounter for check up (procedure)",
          "concept": {
            "concept_id": 3476171,
            "domain_id": "Observation",
            "concept_class_id": "Procedure"
          },
          "vocabulary": {
            "vocabulary_id": "SNOMED",
            "concept_id": 44819097
          }
        }
      ],
      "text": "Encounter for check up (procedure)"
    }