From 08f303fb99fd688c8322e50f626a77da0beef695 Mon Sep 17 00:00:00 2001
From: Blaise deB Frederick <blaise.frederick@gmail.com>
Date: Thu, 11 May 2023 22:27:31 -0400
Subject: [PATCH] Changes for v1.3.6

---
 .gitignore    |  3 +--
 CHANGELOG.md  |  4 ++++
 testdocker.sh | 19 ++++++++++++-------
 3 files changed, 17 insertions(+), 9 deletions(-)

diff --git a/.gitignore b/.gitignore
index ae73650..0a45be4 100644
--- a/.gitignore
+++ b/.gitignore
@@ -21,8 +21,7 @@ capcalc.egg-info/*
 capcalc/_gittag.py
 
 # big data
-capcalc/data/output/orig*lfo*
-capcalc/data/output/*.nii.gz
+capcalc/data/output/*
 
 # cache
 .cache
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 3747a74..c5e254e 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,5 +1,9 @@
 # Release history
 
+## Version 1.3.6 (5/11/23)
+* (Docker) Updated to python 3.11 basecontainer
+* (Docker) Fixed testdocker.sh
+
 ## Version 1.3.5 (1/11/23)
 * (capfromtcs) Fixed summary statistics outputs.
 
diff --git a/testdocker.sh b/testdocker.sh
index f4a62c4..18deadc 100755
--- a/testdocker.sh
+++ b/testdocker.sh
@@ -5,13 +5,18 @@ MYIPADDRESS=`ifconfig en0 | grep 'inet ' | awk '{print $2}'`
 docker run \
     --rm \
     --ipc host \
-    --mount type=bind,source=/Users/frederic/code/capcalc/capcalc/data/examples,destination=/data \
+    --mount type=bind,source=/Users/frederic/code/capcalc/capcalc/data/,destination=/data \
     -it \
     -v /tmp/.X11-unix:/tmp/.X11-unix \
     -u capcalc fredericklab/capcalc:latest \
-    rapidtide \
-        /data/src/sub-RAPIDTIDETEST.nii.gz \
-        /data/dst/sub-RAPIDTIDETEST \
-        --passes 3 \
-        --nprocs 4 \
-        --noglm
+    capfromtcs \
+        -i /data/manyfiles.txt \
+        -o /data/output/manyfiles \
+        --sampletime=0.72 \
+        --varnorm \
+        -m \
+        -b 4800 \
+        -S 1200 \
+        --quality \
+        -E default \
+        --minout=2