From d3a0c13013c4a727f0e3141a67b54c592538572d Mon Sep 17 00:00:00 2001 From: JW <34543031+jwcodee@users.noreply.github.com> Date: Wed, 11 Sep 2024 13:01:53 -0700 Subject: [PATCH] prepare for release 2.3.9 (#483) * prepare for release 2.3.9 * Update ChangeLog Co-authored-by: Lauren Coombe --------- Co-authored-by: Lauren Coombe --- ChangeLog | 7 +++++++ Misc/samtobreak.hs | 2 +- README.md | 2 +- bin/abyss-pe | 2 +- configure.ac | 2 +- doc/ABYSS.1 | 2 +- doc/abyss-pe.1 | 2 +- doc/abyss-tofastq.1 | 2 +- 8 files changed, 14 insertions(+), 7 deletions(-) diff --git a/ChangeLog b/ChangeLog index 2e74bd75..1af1be24 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,10 @@ +2024-09-11 Johnathan Wong + + * Release version 2.3.9 + + General: + * Deallocate memory used by alignment data structure in dialign + 2024-07-18 Lauren Coombe * Release version 2.3.8 diff --git a/Misc/samtobreak.hs b/Misc/samtobreak.hs index b68dc0e9..9eca9b07 100644 --- a/Misc/samtobreak.hs +++ b/Misc/samtobreak.hs @@ -279,7 +279,7 @@ parseArgs = do where help = putStr (usageInfo usage options) >> exitSuccess tryHelp = "Try 'abyss-samtobreak --help' for more information." - version = "abyss-samtobreak (ABySS) 2.3.8\n" + version = "abyss-samtobreak (ABySS) 2.3.9\n" usage = "Usage: samtobreak [OPTION]... [FILE]...\n\ \Calculate contig and scaffold contiguity and correctness metrics.\n" diff --git a/README.md b/README.md index d8e6c956..61f7ed60 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ [![Release](https://img.shields.io/github/release/bcgsc/abyss.svg)](https://github.com/bcgsc/abyss/releases) -[![Downloads](https://img.shields.io/github/downloads/bcgsc/abyss/total?logo=github)](https://github.com/bcgsc/abyss/releases/download/2.3.8/abyss-2.3.8.tar.gz) +[![Downloads](https://img.shields.io/github/downloads/bcgsc/abyss/total?logo=github)](https://github.com/bcgsc/abyss/releases/download/2.3.9/abyss-2.3.9.tar.gz) [![Conda](https://img.shields.io/conda/dn/bioconda/abyss?label=Conda)](https://anaconda.org/bioconda/abyss) [![Issues](https://img.shields.io/github/issues/bcgsc/abyss.svg)](https://github.com/bcgsc/abyss/issues) diff --git a/bin/abyss-pe b/bin/abyss-pe index 8194436c..d9ee3d53 100755 --- a/bin/abyss-pe +++ b/bin/abyss-pe @@ -414,7 +414,7 @@ help: @echo 'Report bugs to https://github.com/bcgsc/abyss/issues or abyss-users@bcgsc.ca.' version: - @echo "abyss-pe (ABySS) 2.3.8" + @echo "abyss-pe (ABySS) 2.3.9" @echo "Written by Shaun Jackman and Anthony Raymond." @echo @echo "Copyright 2012 Canada's Michael Smith Genome Science Centre" diff --git a/configure.ac b/configure.ac index 2cba3021..665bcd0b 100644 --- a/configure.ac +++ b/configure.ac @@ -1,5 +1,5 @@ AC_PREREQ(2.62) -AC_INIT(ABySS, 2.3.8, abyss-users@bcgsc.ca, abyss, +AC_INIT(ABySS, 2.3.9, abyss-users@bcgsc.ca, abyss, http://www.bcgsc.ca/platform/bioinfo/software/abyss) AC_CONFIG_MACRO_DIR([m4]) diff --git a/doc/ABYSS.1 b/doc/ABYSS.1 index edde6f18..60473a4a 100644 --- a/doc/ABYSS.1 +++ b/doc/ABYSS.1 @@ -1,4 +1,4 @@ -.TH ABYSS "1" "2015-May" "ABYSS (ABySS) 2.3.8" "User Commands" +.TH ABYSS "1" "2015-May" "ABYSS (ABySS) 2.3.9" "User Commands" .SH NAME ABYSS \- assemble short reads into contigs .SH SYNOPSIS diff --git a/doc/abyss-pe.1 b/doc/abyss-pe.1 index 909ddb49..190a7c01 100644 --- a/doc/abyss-pe.1 +++ b/doc/abyss-pe.1 @@ -1,4 +1,4 @@ -.TH abyss-pe "1" "2015-May" "abyss-pe (ABySS) 2.3.8" "User Commands" +.TH abyss-pe "1" "2015-May" "abyss-pe (ABySS) 2.3.9" "User Commands" .SH NAME abyss-pe - assemble reads into contigs .SH SYNOPSIS diff --git a/doc/abyss-tofastq.1 b/doc/abyss-tofastq.1 index dc80071b..306250ce 100644 --- a/doc/abyss-tofastq.1 +++ b/doc/abyss-tofastq.1 @@ -1,4 +1,4 @@ -.TH abyss-tofastq "1" "2015-May" "ABySS 2.3.8" "User Commands" +.TH abyss-tofastq "1" "2015-May" "ABySS 2.3.9" "User Commands" .SH NAME abyss-tofastq \- convert various file formats to FASTQ format .br