You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, I try to run my data and I get the following error, but I can't figure it out. I tested your data and it is working fine. I found some discrepancies in the fai file? But I'm not sure if this is causing it. Thank you very much.
ntsynt_viz_format_blocks_gggenomes.py --fai 6LQ.fa.fai 8ZT.fa.fai 3LJ.fa.fai 2XZ.fa.fai 5HH.fa.fai --prefix great-apes_ribbon-plots_no-tree --blocks ntSynt.k24.w1000.synteny_blocks.renamed.sorted.blocks.tsv --length 100000 --seq-length 500000 --colour 6LQ.fa
Traceback (most recent call last):
File "/soft/ntSynt-viz-1.0.0/bin/ntsynt_viz_format_blocks_gggenomes.py", line 213, in
main()
File "/soft/ntSynt-viz-1.0.0/bin/ntsynt_viz_format_blocks_gggenomes.py", line 201, in main
valid_block_ids, keep_seqs = find_valid_blocks(args.blocks, args.length, keep_blocks, fais, args.seq_length)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/soft/ntSynt-viz-1.0.0/bin/ntsynt_viz_format_blocks_gggenomes.py", line 149, in find_valid_blocks
not is_over_seq_length_threshold(curr_block, seq_length_threshold, fais):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/soft/ntSynt-viz-1.0.0/bin/ntsynt_viz_format_blocks_gggenomes.py", line 129, in is_over_seq_length_threshold
return fais[block.genome][block.chrom] > seq_length_threshold
~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
The text was updated successfully, but these errors were encountered:
Hi, I try to run my data and I get the following error, but I can't figure it out. I tested your data and it is working fine. I found some discrepancies in the fai file? But I'm not sure if this is causing it. Thank you very much.
ntsynt_viz_format_blocks_gggenomes.py --fai 6LQ.fa.fai 8ZT.fa.fai 3LJ.fa.fai 2XZ.fa.fai 5HH.fa.fai --prefix great-apes_ribbon-plots_no-tree --blocks ntSynt.k24.w1000.synteny_blocks.renamed.sorted.blocks.tsv --length 100000 --seq-length 500000 --colour 6LQ.fa
Traceback (most recent call last):
File "/soft/ntSynt-viz-1.0.0/bin/ntsynt_viz_format_blocks_gggenomes.py", line 213, in
main()
File "/soft/ntSynt-viz-1.0.0/bin/ntsynt_viz_format_blocks_gggenomes.py", line 201, in main
valid_block_ids, keep_seqs = find_valid_blocks(args.blocks, args.length, keep_blocks, fais, args.seq_length)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/soft/ntSynt-viz-1.0.0/bin/ntsynt_viz_format_blocks_gggenomes.py", line 149, in find_valid_blocks
not is_over_seq_length_threshold(curr_block, seq_length_threshold, fais):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/soft/ntSynt-viz-1.0.0/bin/ntsynt_viz_format_blocks_gggenomes.py", line 129, in is_over_seq_length_threshold
return fais[block.genome][block.chrom] > seq_length_threshold
~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
The text was updated successfully, but these errors were encountered: