Issue Installing lfmm

[nicholasprice79]

Hi,

I am trying to install 'lfmm' on R 3.6.1 (windows 64bit) and
I am having the following problem

devtools::install_github("bcm-uga/lfmm")
Downloading GitHub repo bcm-uga/lfmm@master
Your system is ready to build packages!
Installing 1 packages: RcppEigen
trying URL 'https://cran.revolutionanalytics.com/bin/windows/contrib/3.6/RcppEigen_0.3.3.5.0.zip'
Content type 'application/zip' length 2675544 bytes (2.6 MB)
downloaded 2.6 MB

package ‘RcppEigen’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\Nicholas Price\AppData\Local\Temp\RtmpsRg0R3\downloaded_packages

checking for file 'C:\Users\Nicholas Price\AppData\Local\Temp\RtmpsRg0R3\remotes8846a757c73\bcm-uga-lfmm-5411c35/DESCRIPTION' ...

√ checking for file 'C:\Users\Nicholas Price\AppData\Local\Temp\RtmpsRg0R3\remotes8846a757c73\bcm-uga-lfmm-5411c35/DESCRIPTION'

• preparing 'lfmm':
  checking DESCRIPTION meta-information ...

  checking DESCRIPTION meta-information ...

√ checking DESCRIPTION meta-information

• cleaning src

• checking for LF line-endings in source and make files and shell scripts

• checking for empty or unneeded directories

• looking to see if a 'data/datalist' file should be added

• building 'lfmm_0.0.tar.gz'

• installing source package 'lfmm' ...
  ** using staged installation
  ** libs
  C:/Rtools/mingw_64/bin/g++ -I"C:/PROGRA1/R/R-3.6.1/include" -DNDEBUG -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -I"C:/Program Files/R/R-3.6.1/library/RcppEigen/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
  C:/Rtools/mingw_64/bin/g++ -I"C:/PROGRA1/R/R-3.6.1/include" -DNDEBUG -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -I"C:/Program Files/R/R-3.6.1/library/RcppEigen/include" -O2 -Wall -mtune=generic -c helpers.cpp -o helpers.o
  C:/Rtools/mingw_64/bin/g++ -I"C:/PROGRA1/R/R-3.6.1/include" -DNDEBUG -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -I"C:/Program Files/R/R-3.6.1/library/RcppEigen/include" -O2 -Wall -mtune=generic -c tess3.cpp -o tess3.o
  C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o lfmm.dll tmp.def RcppExports.o helpers.o tess3.o -LC:/PROGRA1/R/R-3.6.1/bin/x64 -lR
  installing to C:/Program Files/R/R-3.6.1/library/00LOCK-lfmm/00new/lfmm/libs/x64
  ** R
  ** data
  *** moving datasets to lazyload DB
  ** inst
  ** byte-compile and prepare package for lazy loading
  Fatal error: cannot open file 'C:\Users\Nicholas': No such file or directory

ERROR: lazy loading failed for package 'lfmm'

• removing 'C:/Program Files/R/R-3.6.1/library/lfmm'
  Error: Failed to install 'lfmm' from GitHub:
  (converted from warning) installation of package ‘C:/Users/Nicholas Price/AppData/Local/Temp/RtmpsRg0R3/file8842006d5c/lfmm_0.0.tar.gz’ had non-zero exit status

[xiahui625649]

Hi,

I am trying to install 'lfmm' on R 3.6.1 (windows 64bit) and
I am having the following problem,can you help me?

 devtools::install_github("bcm-uga/lfmm")
Downloading GitHub repo bcm-uga/lfmm@master
√  checking for file 'C:\Users\XH\AppData\Local\Temp\Rtmpkjoedu\remotes28c090d5e48\bcm-uga-lfmm-5411c35/DESCRIPTION' ...
-  preparing 'lfmm':
√  checking DESCRIPTION meta-information ... 
-  cleaning src
-  checking for LF line-endings in source and make files and shell scripts
-  checking for empty or unneeded directories
-  looking to see if a 'data/datalist' file should be added
-  building 'lfmm_0.0.tar.gz'
   
Installing package into ‘C:/Users/XH/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
* installing *source* package 'lfmm' ...
** using staged installation
** libs

*** arch - i386
C:/Rtools/mingw_32/bin/g++  -I"C:/PROGRA~1/R/R-36~1.0/include" -DNDEBUG  -I"C:/Users/XH/Documents/R/win-library/3.6/Rcpp/include" -I"C:/Users/XH/Documents/R/win-library/3.6/RcppEigen/include"        -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
sh: C:/Rtools/mingw_32/bin/g++: No such file or directory
make: *** [C:/PROGRA~1/R/R-36~1.0/etc/i386/Makeconf:215: RcppExports.o] Error 127
ERROR: compilation failed for package 'lfmm'
* removing 'C:/Users/XH/Documents/R/win-library/3.6/lfmm'
Error: Failed to install 'lfmm' from GitHub:
  (converted from warning) installation of package ‘C:/Users/XH/AppData/Local/Temp/Rtmpkjoedu/file28c044db129d/lfmm_0.0.tar.gz’ had non-zero exit status

[StuntsPT]

@nicholasprice79 The issue you are experiencing is due to a space in your username: "Nicholas Price". R is, for some reason, erroring out because of that. This was probably not very tested on windows, but rather on *nix systems where usernames cannot have whitespace.
You can try the workaround stated here

@xiahui625649 You are probably missing "Rtools". Check this guide for instructions on how to do that.