From 205afe3818a29392d88f66fad2e4bc7fe5280732 Mon Sep 17 00:00:00 2001 From: David Lougheed Date: Thu, 11 Apr 2024 12:56:26 -0400 Subject: [PATCH] fix(backends): import error for WESBackend --- bento_wes/backends/__init__.py | 8 -------- bento_wes/backends/cromwell_local.py | 5 +++-- bento_wes/backends/{_wes_backend.py => wes_backend.py} | 0 bento_wes/runner.py | 2 +- 4 files changed, 4 insertions(+), 11 deletions(-) rename bento_wes/backends/{_wes_backend.py => wes_backend.py} (100%) diff --git a/bento_wes/backends/__init__.py b/bento_wes/backends/__init__.py index e6fcbeef..e69de29b 100644 --- a/bento_wes/backends/__init__.py +++ b/bento_wes/backends/__init__.py @@ -1,8 +0,0 @@ -from . import backend_types -from ._wes_backend import WESBackend - - -__all__ = [ - "backend_types", - "WESBackend", -] diff --git a/bento_wes/backends/cromwell_local.py b/bento_wes/backends/cromwell_local.py index ebf6b0be..13c68ac9 100644 --- a/bento_wes/backends/cromwell_local.py +++ b/bento_wes/backends/cromwell_local.py @@ -4,11 +4,12 @@ from pathlib import Path from typing import TypeVar -from bento_wes.backends import WESBackend -from bento_wes.backends.backend_types import Command from bento_wes.models import Run, RunWithDetails from bento_wes.workflows import WorkflowType, WES_WORKFLOW_TYPE_WDL +from .backend_types import Command +from .wes_backend import WESBackend + __all__ = [ "CromwellLocalBackend" diff --git a/bento_wes/backends/_wes_backend.py b/bento_wes/backends/wes_backend.py similarity index 100% rename from bento_wes/backends/_wes_backend.py rename to bento_wes/backends/wes_backend.py diff --git a/bento_wes/runner.py b/bento_wes/runner.py index 0586ed95..9e9a21e8 100644 --- a/bento_wes/runner.py +++ b/bento_wes/runner.py @@ -5,8 +5,8 @@ from flask import current_app from . import states -from .backends import WESBackend from .backends.cromwell_local import CromwellLocalBackend +from .backends.wes_backend import WESBackend from .celery import celery from .db import Database, get_db from .events import get_new_event_bus