diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index f753ced..d5a2185 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -33,4 +33,6 @@ jobs: - name: Test run: mkdir -p tmp && poetry run pytest -svv --cov=bento_wes --cov-branch - name: Upload coverage to Codecov - uses: codecov/codecov-action@v3 + uses: codecov/codecov-action@v4 + env: + CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} diff --git a/Dockerfile b/Dockerfile index dbd2614..6eca1cf 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.01.01 AS base-deps +FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.02.01 AS base-deps SHELL ["/bin/bash", "-c"] diff --git a/container.requirements.txt b/container.requirements.txt index b6fc3d1..7e8967b 100644 --- a/container.requirements.txt +++ b/container.requirements.txt @@ -1,4 +1,4 @@ gunicorn==21.2.0 gevent==23.9.1 pysam>=0.22.0,<0.23.0 -fasta-checksum-utils>=0.4.0,<0.5 +fasta-checksum-utils>=0.4.1,<0.5 diff --git a/dev.Dockerfile b/dev.Dockerfile index e0184b9..7366163 100644 --- a/dev.Dockerfile +++ b/dev.Dockerfile @@ -1,4 +1,4 @@ -FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.01.01 AS base-deps +FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.02.01 AS base-deps LABEL org.opencontainers.image.description="Local development image for Bento WES." 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