diff --git a/Dockerfile b/Dockerfile index 7ee3567..a01ab31 100644 --- a/Dockerfile +++ b/Dockerfile @@ -47,7 +47,7 @@ RUN curl -L https://github.com/Ensembl/ensembl-xs/archive/2.3.2.zip -o ensembl-x WORKDIR / -FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.09.01 AS base-deps +FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.10.01 AS base-deps SHELL ["/bin/bash", "-c"] diff --git a/dev.Dockerfile b/dev.Dockerfile index 4d417fa..0cff7b5 100644 --- a/dev.Dockerfile +++ b/dev.Dockerfile @@ -47,7 +47,7 @@ RUN curl -L https://github.com/Ensembl/ensembl-xs/archive/2.3.2.zip -o ensembl-x WORKDIR / -FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.09.01 AS base-deps +FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.10.01 AS base-deps LABEL org.opencontainers.image.description="Local development image for Bento WES." LABEL devcontainer.metadata='[{ \ diff --git a/poetry.lock b/poetry.lock index d248ac4..e854798 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,13 +13,13 @@ files = [ [[package]] name = "aiohappyeyeballs" -version = "2.4.2" +version = "2.4.3" description = "Happy Eyeballs for asyncio" optional = false python-versions = ">=3.8" files = [ - {file = "aiohappyeyeballs-2.4.2-py3-none-any.whl", hash = "sha256:8522691d9a154ba1145b157d6d5c15e5c692527ce6a53c5e5f9876977f6dab2f"}, - {file = "aiohappyeyeballs-2.4.2.tar.gz", hash = "sha256:4ca893e6c5c1f5bf3888b04cb5a3bee24995398efef6e0b9f747b5e89d84fd74"}, + {file = "aiohappyeyeballs-2.4.3-py3-none-any.whl", hash = "sha256:8a7a83727b2756f394ab2895ea0765a0a8c475e3c71e98d43d76f22b4b435572"}, + {file = "aiohappyeyeballs-2.4.3.tar.gz", hash = "sha256:75cf88a15106a5002a8eb1dab212525c00d1f4c0fa96e551c9fbe6f09a621586"}, ] [[package]] @@ -1797,30 +1797,31 @@ files = [ [[package]] name = "tox" -version = "4.20.0" +version = "4.21.0" description = "tox is a generic virtualenv management and test command line tool" optional = false python-versions = ">=3.8" files = [ - {file = "tox-4.20.0-py3-none-any.whl", hash = "sha256:21a8005e3d3fe5658a8e36b8ca3ed13a4230429063c5cc2a2fdac6ee5aa0de34"}, - {file = "tox-4.20.0.tar.gz", hash = "sha256:5b78a49b6eaaeab3ae4186415e7c97d524f762ae967c63562687c3e5f0ec23d5"}, + {file = "tox-4.21.0-py3-none-any.whl", hash = "sha256:693ac51378255d34ad7aab6dd2ce9ab6a1cf1924eb930183fde850ad503b681d"}, + {file = "tox-4.21.0.tar.gz", hash = "sha256:e64dd9847ff3a7ec90368be412d7efe61a39caf043222ffbe9ad638ea435f6f6"}, ] [package.dependencies] cachetools = ">=5.5" chardet = ">=5.2" colorama = ">=0.4.6" -filelock = ">=3.15.4" +filelock = ">=3.16.1" packaging = ">=24.1" -platformdirs = ">=4.2.2" +platformdirs = ">=4.3.6" pluggy = ">=1.5" -pyproject-api = ">=1.7.1" +pyproject-api = ">=1.8" tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""} -virtualenv = ">=20.26.3" +typing-extensions = {version = ">=4.12.2", markers = "python_version < \"3.11\""} +virtualenv = ">=20.26.6" [package.extras] -docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-argparse-cli (>=1.17)", "sphinx-autodoc-typehints (>=2.4)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=24.8)"] -testing = ["build[virtualenv] (>=1.2.2)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=9.1.1)", "distlib (>=0.3.8)", "flaky (>=3.8.1)", "hatch-vcs (>=0.4)", "hatchling (>=1.25)", "psutil (>=6)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-xdist (>=3.6.1)", "re-assert (>=1.1)", "setuptools (>=74.1.2)", "time-machine (>=2.15)", "wheel (>=0.44)"] +docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-argparse-cli (>=1.18.2)", "sphinx-autodoc-typehints (>=2.4.4)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=24.8)"] +testing = ["build[virtualenv] (>=1.2.2)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1.0.2)", "diff-cover (>=9.2)", "distlib (>=0.3.8)", "flaky (>=3.8.1)", "hatch-vcs (>=0.4)", "hatchling (>=1.25)", "psutil (>=6)", "pytest (>=8.3.3)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-xdist (>=3.6.1)", "re-assert (>=1.1)", "setuptools (>=75.1)", "time-machine (>=2.15)", "wheel (>=0.44)"] [[package]] name = "typing-extensions" diff --git a/pyproject.toml b/pyproject.toml index c5f01cf..55d1845 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "bento_wes" -version = "0.14.4" +version = "0.14.5" description = "Workflow execution service for the Bento platform." authors = [ "David Lougheed ",