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DESCRIPTION
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DESCRIPTION
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Package: CohortDiagnostics
Type: Package
Title: Diagnostics for OHDSI Cohorts
Version: 3.2.4
Date: 2022-12-19
Authors@R: c(
person("Jamie", "Gilbert", email = "[email protected]", role = c("aut", "cre")),
person("Gowtham", "Rao", role = c("aut")),
person("Martijn", "Schuemie", role = c("aut")),
person("Patrick", "Ryan", role = c("aut")),
person("James", "Weaver", role = c("aut")),
person("Observational Health Data Science and Informatics", role = c("cph"))
)
Maintainer: Jamie Gilbert <[email protected]>
Description: CohortDiagnostics is an R utility package for the development and evaluation of phenotype algorithms for
OMOP CDM compliant data sets. This package provides a standard, end to end, set of analytics for understanding
patient capture including data generation and result exploration through an R Shiny interface.
Analytics computed include cohort characteristics, record counts, index event misclassification, captured
observation windows and basic incidence proportions for age, gender and calendar year.
Through the identification of errors, CohortDiagnostics enables the comparison of multiple candidate cohort
definitions across one or more data sources, facilitating reproducible research.
Depends:
DatabaseConnector (>= 5.0.0),
FeatureExtraction (>= 3.2.0),
R (>= 4.1.0)
Imports:
Andromeda (>= 0.6.0),
ResultModelManager,
checkmate,
clock,
digest,
dplyr (>= 1.0.0),
methods,
ParallelLogger (>= 3.0.0),
readr (>= 2.1.0),
RJSONIO,
rlang,
SqlRender (>= 1.9.0),
stringr,
tidyr (>= 1.2.0),
CohortGenerator (>= 0.8.0),
remotes
Suggests:
Eunomia,
ROhdsiWebApi (>= 1.2.0),
RSQLite (>= 2.2.1),
scales,
testthat,
withr,
zip,
knitr,
shiny,
OhdsiShinyModules
Remotes:
ohdsi/Eunomia,
ohdsi/FeatureExtraction,
ohdsi/ResultModelManager,
ohdsi/ROhdsiWebApi,
ohdsi/CirceR,
ohdsi/CohortGenerator,
ohdsi/OhdsiShinyModules
License: Apache License
VignetteBuilder: knitr
URL: https://ohdsi.github.io/CohortDiagnostics, https://github.com/OHDSI/CohortDiagnostics
BugReports: https://github.com/OHDSI/CohortDiagnostics/issues
RoxygenNote: 7.2.3
Encoding: UTF-8
Language: en-US
StagedInstall: no
Config/testthat/edition: 3