NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(print,cnaqc)
export(CCF)
export(CNA)
export(Mutations)
export(Sequenza_CNAqc)
export(analyze_peaks)
export(annotate_variants)
export(auto_tolerance)
export(compute_CCF)
export(detect_arm_overfragmentation)
export(get_drivers)
export(init)
export(inspect_segment)
export(parse_Battenberg)
export(plot.cnaqc)
export(plot_CCF)
export(plot_arm_fragmentation)
export(plot_data_histogram)
export(plot_gw_ccf)
export(plot_gw_counts)
export(plot_gw_depth)
export(plot_gw_vaf)
export(plot_icon_CNA)
export(plot_karyotypes)
export(plot_multisample_CNA)
export(plot_peaks_analysis)
export(plot_qc)
export(plot_segment_size_distribution)
export(plot_segments)
export(plot_smoothing)
export(print.cnaqc)
export(smooth_segments)
export(split_by_chromosome)
export(subsample)
export(subset_by_minimum_CCF)
export(subset_by_segment_karyotype)
export(subset_by_segment_totalcn)
export(subset_snvs)
import(BMix)
import(RColorBrewer)
import(clisymbols)
import(crayon)
import(easypar)
import(ggpubr)
import(ggrepel)
import(peakPick)
import(pio)
import(tidyverse)
import(vcfR)
importFrom(gtools,mixedsort)