Galaxy Docker Image 18.01

General

• tracking the Galaxy release_18.01 branch
• uwsgi work to adopt to changes for 18.01
• remove nodejs-legacy & npm from Dockerfile and install latest version from ansible-extras
• initial galaxy.ini → galaxy.yml integration

Compose:

• grafana and influxdb container
• Galaxy telegraf integration to push to influxdb
• added some documentation

Galaxy Docker Image 17.09

• much improved documentation about using Galaxy Docker and an external cluster (@rhpvorderman)
• CVMFS support - mounting in 4TB of pre-build reference data (@chambm)
• Singularity support and tests (compose only)
• more work on K8s support and testing (@jmchilton)
• using .env files to configure the compose setup for SLURM, Condor, K8s, SLURM-Singularity, Condor-Docker

Galaxy Docker Image 17.05

• add PROXY_PREFIX variable to enable automatic configuration of Galaxy running under some prefix (@abretaud)
• enable quota by default (just the funtionality, not any specific value)
• HT-Condor is now supported in compose with semi-autoscaling and BioContainers
• using Docker build-args for GALAXY_RELEASE and GALAXY_REPO

Docker Compose version

• Galaxy Docker Compose is completely under Travis testing
• SLURM and HT-Condor setups provided via .env files
• HT-Condor can be used with BioContainers
• added pgadmin for devops
• rabbitmq as a separate container
• added an autoscaling example for HT-Condor

Galaxy Docker Image 17.01

• enable Conda dependency resultion by default
• Galaxy in version 17.01
• more compose work (slurm, postgresql)

Galaxy Docker Image 16.10

• HTTPS support by Marius van den Beek (@mvdbeek) and Alexander Lenail (@zfrenchee)!
• New Docker compose work by Lukas Voegtle!
• New unified testing for Galaxy flavors (https://github.com/bgruening/galaxy-flavor-testing)

Galaxy Docker Image 16.07

• uses Galaxy in version 16.07
• documentation and tests updates for SLURM integration by @mvdbeek
• first version with initial Docker compose support (proftpd ✔️)
• SFTP support by @zfrenchee
• using the galaxy-postgresql ansible role to manage the DB-setup

Galaxy Docker Image 16.04

• include a Galaxy-bare mode, enable with -e BARE=True
• first release with HTCondor installed and pre-configured
• a lot of documentation improvements
• all features from Galaxy 16.04

Galaxy Docker Image 16.01

• based on Galaxy 16.01, with all it's new awesome features
• enable Travis testing for all builds and PR
• offer new yaml based tool installations
• enable dynamic UWSGI processes and threads with -e UWSGI_PROCESSES=2 and -e UWSGI_THREADS=4
• enable dynamic Galaxy handlers -e GALAXY_HANDLER_NUMPROCS=2
• a new lite mode contributed by @kellrott
• first release with Jupyter integration

Galaxy Docker Image 15.10

• Galaxy 15.10 release with all the new features
• fix #94
• documentation improvements by @afgane

Galaxy Docker Image 15.07

• Galaxy 15.07 release with all the new features
• add new tool to activate arbritrary Tool Sheds
• add new tool to install BioJS visualisations
• improvements to Galaxy startup if the database starts slowly (@shiltemann)
• add configurable postgres UID/GID (@chambm)
• documentation improvements by @dpryan79