From d194f93255ed4978c61dd3fd98531321a00f89e4 Mon Sep 17 00:00:00 2001 From: vivekbhr Date: Sun, 25 Feb 2024 15:01:46 +0100 Subject: [PATCH] fit format --- .github/workflows/test.yml | 8 ++++---- sincei/ExponentialFamily.py | 8 +++++--- sincei/scPlotRegion | 9 ++++++--- 3 files changed, 15 insertions(+), 10 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 16cb82e..8134fd8 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -45,10 +45,10 @@ jobs: sincei --help - name: Generate coverage report if: matrix.os == 'ubuntu-latest' - run: | - pip install pytest - pip install pytest-cov - pytest --cov=./ + run: | + pip install pytest + pip install pytest-cov + pytest --cov=./ - name: Upload coverage to Codecov if: matrix.os == 'ubuntu-latest' uses: codecov/codecov-action@v3 diff --git a/sincei/ExponentialFamily.py b/sincei/ExponentialFamily.py index 836b66a..d65cbad 100644 --- a/sincei/ExponentialFamily.py +++ b/sincei/ExponentialFamily.py @@ -73,9 +73,11 @@ def log_likelihood(self, X: torch.Tensor, theta: torch.Tensor): def load_family_params_to_gpu(self, device): self.family_params = { - k: self.family_params[k].to(device) - if type(self.family_params[k]) is torch.Tensor - else self.family_params[k] + k: ( + self.family_params[k].to(device) + if type(self.family_params[k]) is torch.Tensor + else self.family_params[k] + ) for k in self.family_params } diff --git a/sincei/scPlotRegion b/sincei/scPlotRegion index d1ae07a..878ec0f 100755 --- a/sincei/scPlotRegion +++ b/sincei/scPlotRegion @@ -3,14 +3,17 @@ import sys import warnings + warnings.simplefilter(action="ignore", category=RuntimeWarning) warnings.simplefilter(action="ignore", category=PendingDeprecationWarning) -#from pygenometracks import plotTracks +# from pygenometracks import plotTracks + def main(args=None): - #plotTracks.main(args) + # plotTracks.main(args) sys.stderr.out("Not implemented yet") -#if __name__ == "__main__": + +# if __name__ == "__main__": # main()