.gitignore

### Python ###
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]

# C extensions
*.so

# Cython generated files
bhmm/hidden/impl_c/hidden.c
bhmm/msm/tmatrix_sampling.c
bhmm/output_models/impl_c/gaussian.c

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.cache
nosetests.xml
coverage.xml

# Translations
*.mo
*.pot

# Django stuff:
*.log

# Sphinx documentation
docs/_build/

# PyBuilder
target/

## setup files
version.py

## svn
.svn/

## Core latex/pdflatex auxiliary files:
*.aux
*.lof
*.log
*.lot
*.fls
*.out
*.toc

## Intermediate documents:
*.dvi
*-converted-to.*
# these rules might exclude image files for figures etc.
# *.ps
# *.eps
# *.pdf

## Bibliography auxiliary files (bibtex/biblatex/biber):
*.bbl
*.bcf
*.blg
*-blx.aux
*-blx.bib
*.brf
*.run.xml

## Build tool auxiliary files:
*.fdb_latexmk
*.synctex.gz
*.synctex.gz(busy)
*.pdfsync

## Auxiliary and intermediate files from other packages:

# algorithms
*.alg
*.loa

# amsthm
*.thm

# beamer
*.nav
*.snm
*.vrb

#(e)ledmac/(e)ledpar
*.end
*.[1-9]
*.[1-9][0-9]
*.[1-9][0-9][0-9]
*.[1-9]R
*.[1-9][0-9]R
*.[1-9][0-9][0-9]R
*.eledsec[1-9]
*.eledsec[1-9]R
*.eledsec[1-9][0-9]
*.eledsec[1-9][0-9]R
*.eledsec[1-9][0-9][0-9]
*.eledsec[1-9][0-9][0-9]R

# glossaries
*.acn
*.acr
*.glg
*.glo
*.gls

# hyperref
*.brf

# listings
*.lol

# makeidx
*.idx
*.ilg
*.ind
*.ist

# minitoc
*.maf
*.mtc
*.mtc0

# minted
*.pyg

# morewrites
*.mw

# nomencl
*.nlo

# sagetex
*.sagetex.sage
*.sagetex.py
*.sagetex.scmd

# sympy
*.sout
*.sympy
sympy-plots-for-*.tex/

# todonotes
*.tdo

# xindy
*.xdy

# other
.idea
.DS_Store

# generated figures
examples/*/*.pdf