From b6e52348ab2b917a417906f0811c98827e4da26a Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Fri, 3 Nov 2023 12:16:24 +0100 Subject: [PATCH] add participants.json with Levels as objects (#413) * add participants.json * Add TermURLs * some fixes --------- Co-authored-by: Stefan Appelhoff Co-authored-by: Sebastian Urchs --- 7t_trt/participants.json | 21 +++++++++++ ds000117/participants.json | 34 ++++++++++++++++++ ds008/participants.json | 22 ++++++++++++ ds009/participants.json | 21 +++++++++++ ds101/participants.json | 22 ++++++++++++ ds102/participants.json | 25 +++++++++++++ ds108/participants.json | 22 ++++++++++++ ds110/participants.json | 22 ++++++++++++ ds114/participants.json | 15 ++++++++ ds116/participants.json | 65 ++++++++++++++++++++++++++++++++++ eeg_ds000117/participants.json | 22 ++++++++++++ 11 files changed, 291 insertions(+) create mode 100644 7t_trt/participants.json create mode 100644 ds000117/participants.json create mode 100644 ds008/participants.json create mode 100644 ds009/participants.json create mode 100644 ds101/participants.json create mode 100644 ds102/participants.json create mode 100644 ds108/participants.json create mode 100644 ds110/participants.json create mode 100644 ds114/participants.json create mode 100644 ds116/participants.json create mode 100644 eeg_ds000117/participants.json diff --git a/7t_trt/participants.json b/7t_trt/participants.json new file mode 100644 index 000000000..693d4584e --- /dev/null +++ b/7t_trt/participants.json @@ -0,0 +1,21 @@ +{ + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + }, + "age_at_first_scan_years": { + "LongName": "age_at_first_scan_years", + "Units": "years" + } +} \ No newline at end of file diff --git a/ds000117/participants.json b/ds000117/participants.json new file mode 100644 index 000000000..cdc384855 --- /dev/null +++ b/ds000117/participants.json @@ -0,0 +1,34 @@ +{ + "age": { + "LongName": "age", + "Units": "year", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + }, + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + }, + "first_ses": { + "LongName": "first session", + "Description": "Indicates which session was the first session for this subject.", + "Levels": { + "meg": { + "Description": "meg was the first session" + }, + "mri": { + "Description": "mri was the first session" + } + } + } +} \ No newline at end of file diff --git a/ds008/participants.json b/ds008/participants.json new file mode 100644 index 000000000..f197b48f4 --- /dev/null +++ b/ds008/participants.json @@ -0,0 +1,22 @@ +{ + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + }, + "age": { + "LongName": "age", + "Units": "year", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + } +} \ No newline at end of file diff --git a/ds009/participants.json b/ds009/participants.json new file mode 100644 index 000000000..d5120b33c --- /dev/null +++ b/ds009/participants.json @@ -0,0 +1,21 @@ +{ + "Age": { + "LongName": "Age", + "Units": "years", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + }, + "Gender": { + "LongName": "Gender", + "TermURL": "https://schema.org/gender", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "https://schema.org/Female" + }, + "M": { + "Description": "Male", + "TermURL": "https://schema.org/Male" + } + } + } +} \ No newline at end of file diff --git a/ds101/participants.json b/ds101/participants.json new file mode 100644 index 000000000..f197b48f4 --- /dev/null +++ b/ds101/participants.json @@ -0,0 +1,22 @@ +{ + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + }, + "age": { + "LongName": "age", + "Units": "year", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + } +} \ No newline at end of file diff --git a/ds102/participants.json b/ds102/participants.json new file mode 100644 index 000000000..919de8b14 --- /dev/null +++ b/ds102/participants.json @@ -0,0 +1,25 @@ +{ + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "D": { + "Description": "D" + }, + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + }, + "age": { + "LongName": "age", + "Units": "year", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + } +} diff --git a/ds108/participants.json b/ds108/participants.json new file mode 100644 index 000000000..f197b48f4 --- /dev/null +++ b/ds108/participants.json @@ -0,0 +1,22 @@ +{ + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + }, + "age": { + "LongName": "age", + "Units": "year", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + } +} \ No newline at end of file diff --git a/ds110/participants.json b/ds110/participants.json new file mode 100644 index 000000000..f197b48f4 --- /dev/null +++ b/ds110/participants.json @@ -0,0 +1,22 @@ +{ + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + }, + "age": { + "LongName": "age", + "Units": "year", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + } +} \ No newline at end of file diff --git a/ds114/participants.json b/ds114/participants.json new file mode 100644 index 000000000..f6c22a1bc --- /dev/null +++ b/ds114/participants.json @@ -0,0 +1,15 @@ +{ + "dominant_hand": { + "LongName": "dominant_hand", + "Levels": { + "left": { + "Description": "left", + "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/87683000" + }, + "right": { + "Description": "right", + "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/46669005" + } + } + } +} diff --git a/ds116/participants.json b/ds116/participants.json new file mode 100644 index 000000000..d17e209aa --- /dev/null +++ b/ds116/participants.json @@ -0,0 +1,65 @@ +{ + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + }, + "age": { + "LongName": "age", + "Units": "year", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + }, + "handedness": { + "LongName": "handedness", + "Description": "String value indicating handedness", + "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/57427004", + "Levels": { + "L": { + "Description": "Left", + "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/87683000" + }, + "R": { + "Description": "Right", + "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/46669005" + } + } + }, + "ethnicity": { + "LongName": "ethnicity", + "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0004", + "Levels": { + "Asian": { + "Description": "Asian", + "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0008" + }, + "Asian/Caucasian": { + "Description": "Asian Caucasian" + }, + "Caucasian": { + "Description": "Caucasian", + "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0005" + }, + "Caucasian/African/NativeSouthAmerican": { + "Description": "Caucasian African NativeSouthAmerican" + }, + "Hispanic": { + "Description": "Hispanic", + "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0014" + }, + "MiddleEastern": { + "Description": "MiddleEastern", + "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0015" + } + } + } +} \ No newline at end of file diff --git a/eeg_ds000117/participants.json b/eeg_ds000117/participants.json new file mode 100644 index 000000000..6123ff9ab --- /dev/null +++ b/eeg_ds000117/participants.json @@ -0,0 +1,22 @@ +{ + "age": { + "LongName": "age", + "Units": "year", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011" + }, + "sex": { + "LongName": "sex", + "Description": "String value indicating phenotypical sex.", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894", + "Levels": { + "F": { + "Description": "Female", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383" + }, + "M": { + "Description": "Male", + "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384" + } + } + } +} \ No newline at end of file