diff --git a/qmri_mpm/derivatives/hmri/dataset_description.json b/qmri_mpm/derivatives/hmri/dataset_description.json index e7d9cf745..ef89418b6 100644 --- a/qmri_mpm/derivatives/hmri/dataset_description.json +++ b/qmri_mpm/derivatives/hmri/dataset_description.json @@ -15,6 +15,9 @@ "https://doi.org/10.1016/j.dib.2019.104132", "https://doi.org/10.1016/j.neuroimage.2019.01.029", "https://doi.org/10.1016/j.dib.2019.104132" - ] + ], + "DatasetLinks": { + "source": "../../" + } } \ No newline at end of file diff --git a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-MTw_RB1map.json b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-MTw_RB1map.json index 68c544ced..423436272 100644 --- a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-MTw_RB1map.json +++ b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-MTw_RB1map.json @@ -1,11 +1,11 @@ { "IntendedFor": [ - "anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", - "anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii" + "bids:source:sub-01/anat/sub-01_acq-MTw_echo-1_flip-1_mt-on_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-MTw_echo-2_flip-1_mt-on_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-MTw_echo-3_flip-1_mt-on_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-MTw_echo-4_flip-1_mt-on_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-MTw_echo-5_flip-1_mt-on_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-MTw_echo-6_flip-1_mt-on_MPM.nii" ], "RawSources": [ "sub-01/fmap/sub-01_acq-bodyMTw_RB1COR.nii", diff --git a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-PDw_RB1map.json b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-PDw_RB1map.json index 4d34c98b6..bc8c402c6 100644 --- a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-PDw_RB1map.json +++ b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-PDw_RB1map.json @@ -1,13 +1,13 @@ { "IntendedFor": [ - "anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", - "anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii" + "bids:source:sub-01/anat/sub-01_acq-PDw_echo-1_flip-1_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-PDw_echo-2_flip-1_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-PDw_echo-3_flip-1_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-PDw_echo-4_flip-1_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-PDw_echo-5_flip-1_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-PDw_echo-6_flip-1_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-PDw_echo-7_flip-1_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-PDw_echo-8_flip-1_mt-off_MPM.nii" ], "RawSources": [ "sub-01/fmap/sub-01_acq-bodyPDw_RB1COR.nii", diff --git a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-T1w_RB1map.json b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-T1w_RB1map.json index afae8b32b..505f637c0 100644 --- a/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-T1w_RB1map.json +++ b/qmri_mpm/derivatives/hmri/sub-01/fmap/sub-01_acq-T1w_RB1map.json @@ -1,13 +1,13 @@ { "IntendedFor": [ - "anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", - "anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" + "bids:source:sub-01/anat/sub-01_acq-T1w_echo-1_flip-2_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-T1w_echo-2_flip-2_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-T1w_echo-3_flip-2_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-T1w_echo-4_flip-2_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-T1w_echo-5_flip-2_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-T1w_echo-6_flip-2_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-T1w_echo-7_flip-2_mt-off_MPM.nii", + "bids:source:sub-01/anat/sub-01_acq-T1w_echo-8_flip-2_mt-off_MPM.nii" ], "RawSources": [ "sub-01/fmap/sub-01_acq-bodyT1w_RB1COR.nii", diff --git a/qmri_mtsat/derivatives/qMRLab/dataset_description.json b/qmri_mtsat/derivatives/qMRLab/dataset_description.json index d8a8735e2..53525bcba 100644 --- a/qmri_mtsat/derivatives/qMRLab/dataset_description.json +++ b/qmri_mtsat/derivatives/qMRLab/dataset_description.json @@ -9,5 +9,8 @@ "Name": "Manual", "Description": "Adapted from existing example, adjusted to conform to BIDS Derivatives" } - ] + ], + "DatasetLinks": { + "source": "../../" +} } diff --git a/qmri_mtsat/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json b/qmri_mtsat/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json index 62d0042db..72b798b18 100644 --- a/qmri_mtsat/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json +++ b/qmri_mtsat/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json @@ -1,7 +1,7 @@ { "RawSources": [ - "sub-01/fmap/sub-01_flip-01_TB1DAM.nii.gz", - "sub-01/fmap/sub-01_flip-02_TB1DAM.nii.gz" + "bids:source:sub-01/sub-01/fmap/sub-01_flip-01_TB1DAM.nii.gz", + "bids:source:sub-01/sub-01/fmap/sub-01_flip-02_TB1DAM.nii.gz" ], "IntendedFor": [ "anat/sub-01_T1map.nii.gz" diff --git a/qmri_vfa/derivatives/qMRLab/dataset_description.json b/qmri_vfa/derivatives/qMRLab/dataset_description.json index 24a9cfafa..f659fe369 100644 --- a/qmri_vfa/derivatives/qMRLab/dataset_description.json +++ b/qmri_vfa/derivatives/qMRLab/dataset_description.json @@ -14,5 +14,8 @@ "Name": "Manual", "Description": "Adjusted to conform to BIDS Derivatives" } - ] + ], + "DatasetLinks": { + "source": "../../" +} } diff --git a/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json b/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json index 2b03b7ed8..989c4d9d3 100644 --- a/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json +++ b/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json @@ -3,7 +3,7 @@ "sub-01/fmap/sub-01_acq-tr2_TB1AFI.nii.gz" ], "IntendedFor": [ - "anat/sub-01_T1map.nii.gz" + "bids:source:sub-01/anat/sub-01_T1map.nii.gz" ], "MagneticFieldStrength": "3", "Manufacturer": "Siemens",