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(deno) yoh@typhon:/mnt/DATA/data/yoh/1076_spacetop$ git ls-tree -r --name-only HEAD | /home/yoh/proj/bids/bids-validator/bids-validator/./bids-validator-deno --filenameMode
A new release of Deno is available: 1.44.3 → 1.44.4 Run `deno upgrade` to install it.
Usage: bids-validator <dataset_directory>
Version: v1.14.7-dev.0-68-g53fdba69
Description:
This tool checks if a dataset in a given directory is compatible with the Brain Imaging Data Structure specification. To learn more about
Brain Imaging Data Structure visit http://bids.neuroimaging.io
Options:
-h, --help - Show this help.
-V, --version - Show the version number for this program.
--json - Output machine readable JSON
-s, --schema <type> - Specify a schema version to use for validation (Default: "latest")
-v, --verbose - Log more extensive information about issues
--ignoreNiftiHeaders - Disregard NIfTI header content during validation
--debug <type> - Enable debug output (Default: "ERROR", Values: "NOTSET", "DEBUG", "INFO",
"WARN", "ERROR", "CRITICAL")
--filenameMode - Enable filename checks for newline separated filenames read from stdin
error: Missing argument(s): dataset_directory
and from the --filenameMode - Enable filename checks for newline separated filenames read from stdin it sounds like it should not require dataset path. MAy be I also misunderstood the purpose -- is this option to restrict the set of files to validate for? or operate only on file names? (@effigies mentioned that mode)
The text was updated successfully, but these errors were encountered:
We use the filename mode to implement the OpenNeuro git hook but it does look broken in the Deno validator. It should skip reading local files and validate filenames from stdin.
effigies
transferred this issue from bids-standard/legacy-validator
Nov 4, 2024
and from the
--filenameMode - Enable filename checks for newline separated filenames read from stdin
it sounds like it should not require dataset path. MAy be I also misunderstood the purpose -- is this option to restrict the set of files to validate for? or operate only on file names? (@effigies mentioned that mode)The text was updated successfully, but these errors were encountered: