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FOI: protocol of successfull submission to NDA #23

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yarikoptic opened this issue Jun 26, 2019 · 1 comment
Open

FOI: protocol of successfull submission to NDA #23

yarikoptic opened this issue Jun 26, 2019 · 1 comment

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@yarikoptic
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Just to share our experiences with @amanelis17.

It did use some changes to bids2nda which are yet to be PRed

  1. bids2nda call
  2. tr '\t' ',' < /data/NDA/output_v2/image03.tsv | sed -e 's,/data/R01/bids/Brain/wpc-7642/,,g' -e 's,/data/NDA/output_v2/,,g' >| /data/NDA/output_v2/image03.csv due to generate .csv not a .txt (which is actually .tsv) file as output #20
    , having full local paths in .csv for data files still requires some location to be entered NDAR/nda-tools#14 and support full paths in the file list .csv NDAR/nda-tools#15
  3. vtcmd -c 2908 -d "CLAP study - 62 subjects collected prior to 6/21/2019" -t "CLAP study neuroimaging data up to 6/21/2019" -b /data/NDA/output_v2/image03.csv -l /data/R01/bids/Brain/wpc-7642/ /data/NDA/output_v2/

and we succeeded to upload 261G - whoohoo!

@yarikoptic
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could be closed any moment or generalized into documentation with README.md for a full workflow to submit to NDA.

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