feat: integrate reev-frontend-lib as git submodule (#412) (#435)

.github/workflows/docker-build.yml

@@ -25,9 +25,10 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
-          fetch-depth: "0"
+            lfs: 'true'
+            submodules: recursive
 
       - name: Log in to the Container registry
         uses: docker/login-action@v2

.github/workflows/main.yml

@@ -23,9 +23,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
-            lfs: 'true'
+         lfs: 'true'
 
       - name: Set up Python 3.10
         uses: actions/setup-python@v4
@@ -49,9 +49,9 @@ jobs:
       - Backend-Lint
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
-            lfs: 'true'
+         lfs: 'true'
 
       - name: Set up Python 3.10
         uses: actions/setup-python@v4
@@ -87,9 +87,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
-            lfs: 'true'
+          lfs: 'true'
+          submodules: recursive
 
       - name: Set up node 20.x
         uses: actions/setup-node@v3
@@ -111,9 +112,10 @@ jobs:
       - Frontend-Lint
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
         with:
-            lfs: 'true'
+          lfs: 'true'
+          submodules: recursive
 
       - name: Set up node 20.x
         uses: actions/setup-node@v3

.github/workflows/release-please.yml

@@ -28,7 +28,10 @@ jobs:
     if: ${{ needs.release-please.outputs.release_created }}
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
+        with:
+          lfs: 'true'
+          submodules: recursive
 
       - name: Log in to the Container registry
         uses: docker/login-action@v2

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "frontend/src/ext/reev-frontend-lib"]
+	path = frontend/src/ext/reev-frontend-lib
+	url = [email protected]:bihealth/reev-frontend-lib.git

backend/tests/api/internal/test_remote.py

@@ -58,7 +58,7 @@ async def test_acmg_missing_query_params(client: TestClient):
 
 @pytest.mark.anyio
 async def test_cnv_acmg(httpx_mock: HTTPXMock, client: TestClient):
-    """Test forwarding to PubTator 3 API."""
+    """Test forwarding to AutoCNV API."""
     # arrange:
     httpx_mock.add_response(
         url="https://phoenix.bgi.com/api/acit/jobs/",

docs/dev_quickstart.rst

@@ -67,6 +67,14 @@ Install NodeJS v20 (LTS):
     $ curl -fsSL https://deb.nodesource.com/setup_20.x | sudo -E bash -
     $ sudo apt-get install -y nodejs
 
+----------------
+Clone Repository
+----------------
+
+.. code-block:: bash
+
+    $ git clone --recursive [email protected]/bihealth/reev.git
+
 --------------------
 Install Dependencies
 --------------------

frontend/.browserslistrc

@@ -0,0 +1,4 @@
+> 1%
+last 2 versions
+not dead
+not ie 11

frontend/.editorconfig

@@ -0,0 +1 @@
+../.editorconfig

frontend/.eslintrc.cjs

@@ -3,15 +3,35 @@ require('@rushstack/eslint-patch/modern-module-resolution')
 
 module.exports = {
   root: true,
-  'extends': [
+  extends: [
     '@vue/typescript/recommended',
     'plugin:vue/vue3-recommended',
     '@vue/eslint-config-typescript',
-    '@vue/eslint-config-prettier/skip-formatting'
+    '@vue/eslint-config-prettier/skip-formatting',
+    'plugin:storybook/recommended'
+  ],
+  ignorePatterns:[
+    "**/node_modules/**"
   ],
   rules: {
-    "@typescript-eslint/no-explicit-any": "off",
+    '@typescript-eslint/no-explicit-any': 'off',
+    '@typescript-eslint/ban-ts-comment': 'off',
+    'no-unused-vars': 'off',
+    '@typescript-eslint/no-unused-vars': [
+      'warn', // or "error"
+      {
+        argsIgnorePattern: '^_',
+        varsIgnorePattern: '^_',
+        caughtErrorsIgnorePattern: '^_'
+      }
+    ]
   },
+  overrides: [
+    {
+      files: ['*.mdx'],
+      extends: 'plugin:mdx/recommended'
+    }
+  ],
   parserOptions: {
     ecmaVersion: 'latest'
   }

frontend/.gitignore

@@ -1,8 +1,8 @@
 /coverage
 
 .DS_Store
-node_modules
-/dist
+**/node_modules
+**/dist
 
 
 # local env files

frontend/.prettierignore

@@ -0,0 +1 @@
+src/ext