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setup.py
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setup.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os.path
from setuptools import setup, find_packages
import versioneer
def parse_requirements(path):
"""Parse ``requirements.txt`` at ``path``."""
requirements = []
with open(path, "rt") as reqs_f:
for line in reqs_f:
line = line.strip()
if line.startswith("-r"):
fname = line.split()[1]
inner_path = os.path.join(os.path.dirname(path), fname)
requirements += parse_requirements(inner_path)
elif line != "" and not line.startswith("#"):
if line.startswith("-e"):
url, name = line.split()[1].split("#egg=", 1)
requirements.append("%s @ %s" % (name, url))
else:
requirements.append(line)
return requirements
with open("README.md") as readme_file:
readme = readme_file.read()
with open("HISTORY.md") as history_file:
history = history_file.read()
test_requirements = parse_requirements("requirements/test.txt")
install_requirements = parse_requirements("requirements/base.txt")
setup(
author="Manuel Holtgrewe",
author_email="[email protected]",
classifiers=[
"Development Status :: 4 - Beta",
"Intended Audience :: Developers",
"License :: OSI Approved :: MIT License",
"Natural Language :: English",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
# "Programming Language :: Python :: 3.7",
# "Programming Language :: Python :: 3.8",
],
entry_points={},
description="Implementation of omics data ingest using iRODS capabilities",
install_requires=install_requirements,
license="MIT license",
long_description=readme + "\n\n" + history,
long_description_content_type="text/markdown",
include_package_data=True,
keywords="irods",
name="rodeos_ingest",
packages=find_packages(include=["rodeos_ingest"]),
test_suite="tests",
tests_require=test_requirements,
url="https://github.com/bihealth/rodeos-ingest",
version=versioneer.get_version(),
cmdclass=versioneer.get_cmdclass(),
zip_safe=False,
)