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executions.xml
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executions.xml
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<scheduled_executions>
<!--
<execution>
<class_full_name>com.bio4j.examples.uniref.FindLCAOfUniRefCluster</class_full_name>
<arguments>
<argument>bio4j</argument>
<argument>100</argument>
<argument>UniRef100_Q6GZX1</argument>
</arguments>
</execution>
<execution>
<class_full_name>com.bio4j.examples.go.GetGOAnnotation</class_full_name>
<arguments>
<argument>bio4j</argument>
<argument>uniprotIds.txt</argument>
<argument>go_annotation.json</argument>
<argument>true</argument>
<argument>true</argument>
<argument>true</argument>
</arguments>
</execution>
<execution>
<class_full_name>com.bio4j.examples.go.GetCumulativeFrequenciesForGoSet</class_full_name>
<arguments>
<argument>bio4j</argument>
<argument>go_annotation.json</argument>
<argument>go_annotation_including_cumulative_values.json</argument>
</arguments>
</execution>
<execution>
<class_full_name>com.bio4j.examples.go.TransformGOJSONtoHierarchicalJSON</class_full_name>
<arguments>
<argument>go_annotation_including_cumulative_values.json</argument>
<argument>go_annotation_including_cumulative_values_hierarchical.json</argument>
</arguments>
</execution>
-->
<execution>
<class_full_name>com.bio4j.examples.go.ExportGOJSONToCSV</class_full_name>
<arguments>
<argument>go_annotation_including_cumulative_values.json</argument>
<argument>go_annotation_including_cumulative_values.csv</argument>
<argument>true</argument>
<argument>true</argument>
</arguments>
</execution>
<!--
<execution>
<class_full_name>com.bio4j.examples.geninfo.GetProteinsAssociatedToGIs</class_full_name>
<arguments>
<argument>bio4j</argument>
<argument>giIds.txt</argument>
<argument>proteinsAssociatedToGIs.json</argument>
</arguments>
</execution>
<execution>
<class_full_name>com.bio4j.examples.enzyme.GetProteinEnzymaticActivity</class_full_name>
<arguments>
<argument>getProteinEnzymaticActivity.properties</argument>
<argument>P07647</argument>
</arguments>
</execution>
-->
</scheduled_executions>