executionsBio4j.xml

<scheduled_executions>
  <execution>
    <class_full_name>com.bio4j.neo4jdb.programs.InitBio4jDB</class_full_name>
    <arguments>
      <argument>bio4jdb</argument>
      <argument>batchInserter.properties</argument>
    </arguments>
  </execution>
  <execution>
    <class_full_name>com.bio4j.neo4jdb.programs.ImportEnzymeDB</class_full_name>
    <arguments>
      <argument>enzyme.dat</argument>
      <argument>bio4jdb</argument>
      <argument>batchInserter.properties</argument>
    </arguments>
  </execution>
  <execution>
    <class_full_name>com.bio4j.neo4jdb.programs.ImportGeneOntology</class_full_name>
    <arguments>
      <argument>go.xml</argument>
      <argument>bio4jdb</argument>
      <argument>batchInserter.properties</argument>
    </arguments>
  </execution>
  <execution>
    <class_full_name>com.bio4j.neo4jdb.programs.ImportUniprot</class_full_name>
    <arguments>
      <argument>uniprot_sprot.xml</argument>
      <argument>bio4jdb</argument>
      <argument>batchInserter.properties</argument>
      <argument>uniprotData.xml</argument>
    </arguments>
  </execution>
      <execution>
        <class_full_name>com.bio4j.neo4jdb.programs.ImportUniprot</class_full_name>
        <arguments>
            <argument>uniprot_trembl.xml</argument>
            <argument>bio4jdb</argument><!-- Database folder -->
            <argument>batchInserter.properties</argument><!--Batch inserter properties file-->
            <argument>uniprotData.xml</argument><!--XML file used to customize the amount of data imported-->
        </arguments>
    </execution>   
  <execution>
    <class_full_name>com.bio4j.neo4jdb.programs.ImportNCBITaxonomy</class_full_name>
    <arguments>
      <argument>nodes.dmp</argument>
      <argument>names.dmp</argument>
      <argument>merged.dmp</argument>
      <argument>bio4jdb</argument>
      <argument>true</argument>
    </arguments>
  </execution>
    <execution>
        <class_full_name>com.bio4j.neo4jdb.programs.ImportRefSeq</class_full_name>
        <arguments>
            <argument>refseq_data</argument><!-- Folder including all .gbff files -->
            <argument>bio4jdb</argument><!--Database folder-->
            <argument>batchInserter.properties</argument><!--Batch inserter properties file-->
        </arguments>
    </execution>  
  <execution>
    <class_full_name>com.bio4j.neo4jdb.programs.ImportUniref</class_full_name>
        <arguments>
            <argument>uniref100.xml</argument><!--UniRef 100 XML file-->
            <argument>uniref90.xml</argument><!--UniRef 90 XML file-->
            <argument>uniref50.xml</argument><!--UniRef 50 XML file-->
            <argument>bio4jdb</argument><!--Database folder-->
            <argument>batchInserter.properties</argument><!--Batch inserter properties file-->
        </arguments>
    </execution>    
</scheduled_executions>