ToDos Deadline

[martinrohbeck]

Everybody:

• Read draft, make suggestions, draw conclusions from Figures

Tim:

• Make GPs part of the cellij model, both 1D and 2D #68
• Run GP on some test data as a POC
• Fill in Table in Appendix with established methods
• Make Plots Features (x-axs) vs Factor Norms (y-axis) for Non-negativity vs. HS & SNS & Laplace for non-negative DGP
• 1st plot: 2 UMAPs of latent space z (one colored by time, one colored by diff stage). Inference w/o any covariates
• 2nd plot: 2 UMAPs of latent space z (one colored by time, one colored by diff stage). Inference only with time in GP
• 3rd plot: 2 UMAPs of latent space z (one colored by time, one colored by diff stage). Inference with time and diff stage in GP
• Gridsearch over lengthscales [0.001, 0.01, 0.1, 1, 2, 5, 10]
• Predict only 1 or 2 factors from the GP, estimate other factors separately

Arber:

• Refactor generative models with multiple plate combinations (SnS etc...)
• Write subsection about DGP of synthetic data
• Add benchmark results on sparsity and recon error as a table (prec, rec, f1, rmse)

Martin:

• Make Plots Features (x-axis) vs R2 Reconstruction (y-axis) for different Sparsity Priors
• CLL Data
• Depending on GPU, repeat all plots but with samples/views/missings on y-axis
• Make Heatmaps: Features x Samples vs Time until Convergence for different Priors

Not assigned (for grabs):

[martinrohbeck]

Relevant ToDos are new issues now. Closing.