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Support degenerate codons in translate table #29

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reece opened this issue Apr 9, 2020 · 1 comment
Closed

Support degenerate codons in translate table #29

reece opened this issue Apr 9, 2020 · 1 comment

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@reece
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reece commented Apr 9, 2020

biocommons/hgvs#595 identified that degenerate codons are not supported by the translate function.

For the hgvs, this is a regression relative to prior versions that used biopython.

While this is being fixed, consider moving the translation tables to _data (i.e., here) to be accessed the same way that assemblies and cytobands are.

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stale bot commented Jun 8, 2020

This issue has not had recent activity and is now marked as stale. It will be closed if no further activity occurs. Please comment if you believe the issue is still relevant.

@stale stale bot added the won't fix This will not be worked on label Jun 8, 2020
@stale stale bot closed this as completed Jun 15, 2020
@reece reece reopened this Apr 14, 2021
@stale stale bot removed the won't fix This will not be worked on label Apr 14, 2021
@reece reece closed this as completed in c5ea54e Apr 14, 2021
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