From fb01f3fa6c3087c0975a463c99238c3a35007d50 Mon Sep 17 00:00:00 2001 From: Kori Kuzma Date: Thu, 2 Jan 2025 23:04:55 -0500 Subject: [PATCH] fix(test): add vcr_config for cassette management and re-run cassettes * set record_mode to fix failing tests * ci uses 'once' * default uses 'new_episodes' (can overide via VCR_RECORD_MODE env var) * re-ran cassettes to update with the correct config --- .github/workflows/python-package.yml | 3 + .../test_hgvs_to_vcf.yaml | 262 +++++++++------- tests/conftest.py | 13 + .../test_437/Test437_RMRP.test_terminii.yaml | 271 +++++++++-------- .../test_437/test_invitae_examples.yaml | 251 +++++++++------- .../cassettes/test_437/test_oob_dup.yaml | 146 +++++---- ...test_pair[COX6A2-GRCh38-rs1033792906].yaml | 24 +- .../test_pair[COX6A2-GRCh38-rs200780049].yaml | 73 +++-- .../test_pair[COX6A2-GRCh38-rs375688325].yaml | 72 +++-- .../test_pair[COX6A2-GRCh38-rs755670336].yaml | 73 +++-- .../test_pair[COX6A2-GRCh38-rs756406653].yaml | 24 +- .../test_pair[COX6A2-GRCh38-rs764753905].yaml | 72 +++-- .../test_pair[COX6A2-GRCh38-rs909673485].yaml | 73 +++-- .../test_pair[COX6A2-GRCh38-rs961248971].yaml | 48 +-- .../test_pair[GPHB5-GRCh37-rs1204774077].yaml | 73 +++-- .../test_pair[GPHB5-GRCh37-rs1221379530].yaml | 73 +++-- .../test_pair[GPHB5-GRCh37-rs1299953722].yaml | 22 +- .../test_pair[GPHB5-GRCh37-rs1380832691].yaml | 73 +++-- .../test_pair[GPHB5-GRCh37-rs144659601].yaml | 24 +- .../test_pair[GPHB5-GRCh37-rs753041439].yaml | 73 +++-- .../test_pair[GPHB5-GRCh37-rs982881702].yaml | 73 +++-- .../test_pair[GPHB5-GRCh38-rs1204774077].yaml | 24 +- .../test_pair[GPHB5-GRCh38-rs1221379530].yaml | 24 +- .../test_pair[GPHB5-GRCh38-rs1299953722].yaml | 24 +- .../test_pair[GPHB5-GRCh38-rs1380832691].yaml | 24 +- .../test_pair[GPHB5-GRCh38-rs144659601].yaml | 24 +- .../test_pair[GPHB5-GRCh38-rs753041439].yaml | 24 +- .../test_pair[GPHB5-GRCh38-rs982881702].yaml | 24 +- tests/issues/cassettes/test_525/test_525.yaml | 283 ++++++++++++++---- 29 files changed, 1373 insertions(+), 894 deletions(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 381d5e74..5d637785 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -45,6 +45,9 @@ jobs: matrix: python-version: ["3.10", "3.11", "3.12"] + env: + VCR_RECORD_MODE: once + steps: - uses: actions/checkout@v4 diff --git a/tests/cassettes/test_hgvs_extras_babelfish/test_hgvs_to_vcf.yaml b/tests/cassettes/test_hgvs_extras_babelfish/test_hgvs_to_vcf.yaml index 7663ee8a..fff186f7 100644 --- a/tests/cassettes/test_hgvs_extras_babelfish/test_hgvs_to_vcf.yaml +++ b/tests/cassettes/test_hgvs_extras_babelfish/test_hgvs_to_vcf.yaml @@ -9,14 +9,18 @@ interactions: Connection: - keep-alive User-Agent: - - python-requests/2.31.0 + - python-requests/2.32.3 method: GET uri: 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index d4c27185..b4568147 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,4 +1,5 @@ import os +from pathlib import Path import pytest from support import CACHE @@ -6,6 +7,17 @@ import hgvs.easy from hgvs.extras.babelfish import Babelfish + +@pytest.fixture(scope="function") +def vcr_config(request): + test_file_path = Path(request.node.fspath) + return { + "cassette_library_dir": str(test_file_path.with_name("cassettes") / test_file_path.stem), + "record_mode": os.environ.get("VCR_RECORD_MODE", "new_episodes"), + "cassette_name": f"{request.node.name}.yaml" + } + + hgvs.easy.hdp = hgvs.dataproviders.uta.connect( mode=os.environ.get("HGVS_CACHE_MODE", "run"), cache=CACHE ) @@ -66,3 +78,4 @@ def test_foo(self): request.cls.parser = parser request.cls.am37 = am37 request.cls.am38 = am38 + diff --git a/tests/issues/cassettes/test_437/Test437_RMRP.test_terminii.yaml b/tests/issues/cassettes/test_437/Test437_RMRP.test_terminii.yaml index 4321ad49..edc9027f 100644 --- 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timeout=4, max=40 NCBI-PHID: - - D0BD088E3BFC1F95000034D4B66314A8.1.1.m_5 + - D0BD4D15A8D0CB65000048CB1E1C6457.1.1.m_5 NCBI-SID: - - 514F9B5A8760A13A_68A8SID + - E95AE013DE773B79_B72CSID Referrer-Policy: - origin-when-cross-origin Server: - Finatra Set-Cookie: - - ncbi_sid=514F9B5A8760A13A_68A8SID; domain=.nih.gov; path=/; expires=Sun, 15 - Sep 2024 22:57:40 GMT + - ncbi_sid=E95AE013DE773B79_B72CSID; domain=.nih.gov; path=/; expires=Sat, 03 + Jan 2026 04:03:13 GMT Strict-Transport-Security: - max-age=31536000; includeSubDomains; preload Transfer-Encoding: @@ -250,7 +265,7 @@ interactions: X-RateLimit-Limit: - '3' X-RateLimit-Remaining: - - '2' + - '0' X-UA-Compatible: - IE=Edge X-XSS-Protection: @@ -270,15 +285,18 @@ interactions: Connection: - keep-alive User-Agent: - - python-requests/2.31.0 + - python-requests/2.32.3 method: GET uri: 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+ - python-requests/2.32.3 method: GET uri: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NM_145171.3&rettype=fasta&seq_start=2&seq_stop=22&tool=bioutils&email=biocommons-dev@googlegroups.com response: body: - string: !!binary | - H4sIAAAAAAAAALLz8403NDE1NDfUM7Yy0jUyUvDIz81XKE4syEzNK1ZIz6lMzi8oyi9JzcxTyMgv - ys3PS1UoLk0qzcssUUhKLUlUMFXQcA/wcDLV1FHIDfJz5HJ3dHQMcQ4JcXQPcXd2BJIhIc6OXFwA - AAAA//8DALTr1LloAAAA + string: '>NM_145171.3:2-22 Homo sapiens glycoprotein hormone subunit beta 5 + (GPHB5), mRNA + + GAAATCTTAGTGCAAGTTTCA + + + ' headers: Access-Control-Allow-Origin: - '*' @@ -164,20 +175,20 @@ interactions: Content-Type: - text/plain Date: - - Fri, 15 Sep 2023 22:58:16 GMT + - Fri, 03 Jan 2025 04:01:35 GMT Keep-Alive: - timeout=4, max=40 NCBI-PHID: - - 939B73A67CF44655000048D18176816D.1.1.m_5 + - D0BD4D15A8D0CB6500002CCA39711036.1.1.m_5 NCBI-SID: - - 945CC181581AF121_1D6FSID + - 4C9F21D3CD3DBE51_1D0CSID Referrer-Policy: - origin-when-cross-origin Server: 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path=/; expires=Sun, 15 - Sep 2024 22:58:53 GMT + - ncbi_sid=6683BE9B1005AD46_D0CCSID; domain=.nih.gov; path=/; expires=Sat, 03 + Jan 2026 04:01:44 GMT Strict-Transport-Security: - max-age=31536000; includeSubDomains; preload Transfer-Encoding: @@ -54,7 +58,7 @@ interactions: X-RateLimit-Limit: - '3' X-RateLimit-Remaining: - - '2' + - '1' X-UA-Compatible: - IE=Edge X-XSS-Protection: diff --git a/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs1299953722].yaml b/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs1299953722].yaml index d5752878..9efac833 100644 --- a/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs1299953722].yaml +++ b/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs1299953722].yaml @@ -9,14 +9,18 @@ interactions: Connection: - keep-alive User-Agent: - - python-requests/2.31.0 + - python-requests/2.32.3 method: GET uri: 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path=/; expires=Sun, 15 - Sep 2024 22:59:03 GMT + - ncbi_sid=747DF3BC68A83A51_F5CESID; domain=.nih.gov; path=/; expires=Sat, 03 + Jan 2026 04:01:46 GMT Strict-Transport-Security: - max-age=31536000; includeSubDomains; preload Transfer-Encoding: @@ -54,7 +58,7 @@ interactions: X-RateLimit-Limit: - '3' X-RateLimit-Remaining: - - '2' + - '0' X-UA-Compatible: - IE=Edge X-XSS-Protection: diff --git a/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs753041439].yaml b/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs753041439].yaml index 157dde81..c6d93beb 100644 --- a/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs753041439].yaml +++ b/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs753041439].yaml @@ -9,14 +9,18 @@ interactions: Connection: - keep-alive User-Agent: - - python-requests/2.31.0 + - python-requests/2.32.3 method: GET uri: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NC_000014.9&rettype=fasta&seq_start=63312924&seq_stop=63312924&tool=bioutils&email=biocommons-dev@googlegroups.com response: body: - string: !!binary | - H4sIAAAAAAAAALLzc443AAJDEz1LKzNjY0MjSyMTXRhDwSM/N1+hOLEgMzWvWCE5owjILc7PTVUw - NNFRcA9yzjC20CswNFEIKMrMTSyqVHAsLk7NTcqp5HLn4gIAAAD//wMAzTiX4FoAAAA= + string: '>NC_000014.9:63312924-63312924 Homo sapiens chromosome 14, GRCh38.p14 + Primary Assembly + + G + + + ' headers: Access-Control-Allow-Origin: - '*' @@ -33,20 +37,20 @@ interactions: Content-Type: - text/plain Date: - - Fri, 15 Sep 2023 22:58:58 GMT + - Fri, 03 Jan 2025 04:01:45 GMT Keep-Alive: - timeout=4, max=40 NCBI-PHID: - - 939B73A67CF4465500004BD1D1417E79.1.1.m_5 + - D0BD4D15A8D0CB65000057CA4F6B1846.1.1.m_5 NCBI-SID: - - EE9B718F04FAE066_68E3SID + - 6E595A65503C8DEF_1853SID Referrer-Policy: - origin-when-cross-origin Server: - Finatra Set-Cookie: - - ncbi_sid=EE9B718F04FAE066_68E3SID; domain=.nih.gov; path=/; expires=Sun, 15 - Sep 2024 22:58:58 GMT + - ncbi_sid=6E595A65503C8DEF_1853SID; domain=.nih.gov; path=/; expires=Sat, 03 + Jan 2026 04:01:45 GMT Strict-Transport-Security: - max-age=31536000; includeSubDomains; preload Transfer-Encoding: @@ -54,7 +58,7 @@ interactions: X-RateLimit-Limit: - '3' X-RateLimit-Remaining: - - '2' + - '1' X-UA-Compatible: - IE=Edge X-XSS-Protection: diff --git a/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs982881702].yaml b/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs982881702].yaml index e9f3402d..45943068 100644 --- a/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs982881702].yaml +++ b/tests/issues/cassettes/test_477/test_pair[GPHB5-GRCh38-rs982881702].yaml @@ -9,14 +9,18 @@ interactions: Connection: - keep-alive User-Agent: - - python-requests/2.31.0 + - python-requests/2.32.3 method: GET uri: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NC_000014.9&rettype=fasta&seq_start=63318878&seq_stop=63318878&tool=bioutils&email=biocommons-dev@googlegroups.com response: body: - string: !!binary | - H4sIAAAAAAAAALLzc443AAJDEz1LKzNjY0MLC3MLXRhDwSM/N1+hOLEgMzWvWCE5owjILc7PTVUw - NNFRcA9yzjC20CswNFEIKMrMTSyqVHAsLk7NTcqp5HLm4gIAAAD//wMAPXGh8loAAAA= + string: '>NC_000014.9:63318878-63318878 Homo sapiens chromosome 14, GRCh38.p14 + Primary Assembly + + C + + + ' headers: Access-Control-Allow-Origin: - '*' @@ -33,20 +37,20 @@ interactions: Content-Type: - text/plain Date: - - Fri, 15 Sep 2023 22:58:51 GMT + - Fri, 03 Jan 2025 04:01:43 GMT Keep-Alive: - timeout=4, max=40 NCBI-PHID: - - 322C409D773A9D45000031BA2C34BBE6.1.1.m_5 + - 322C0114E2C0794500004ACE305E3538.1.1.m_5 NCBI-SID: - - 14024452E4D0A174_5515SID + - 87D9B198B43E3964_120DSID Referrer-Policy: - origin-when-cross-origin Server: - Finatra Set-Cookie: - - ncbi_sid=14024452E4D0A174_5515SID; domain=.nih.gov; path=/; expires=Sun, 15 - Sep 2024 22:58:50 GMT + - ncbi_sid=87D9B198B43E3964_120DSID; domain=.nih.gov; path=/; expires=Sat, 03 + Jan 2026 04:01:43 GMT Strict-Transport-Security: - max-age=31536000; includeSubDomains; preload Transfer-Encoding: @@ -54,7 +58,7 @@ interactions: X-RateLimit-Limit: - '3' X-RateLimit-Remaining: - - '2' + - '1' X-UA-Compatible: - IE=Edge X-XSS-Protection: diff --git a/tests/issues/cassettes/test_525/test_525.yaml b/tests/issues/cassettes/test_525/test_525.yaml index 260fd916..1bd6385e 100644 --- a/tests/issues/cassettes/test_525/test_525.yaml +++ b/tests/issues/cassettes/test_525/test_525.yaml @@ -9,41 +9,148 @@ interactions: Connection: - keep-alive User-Agent: - - python-requests/2.31.0 + - python-requests/2.32.3 method: GET uri: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NM_000551.3&rettype=fasta&tool=bioutils&email=biocommons-dev@googlegroups.com response: body: - string: !!binary | - H4sIAAAAAAAAAExRPWvDQAzd71fc2EJaHELWgtAgD2mGIroW03ow1Pbhs/P7Kz05pNiW9fn0JL1d - 37+apjmfj6+n3M7jnGtXhn6q+TZPuR1K6X9fLsP002153cZ5yXUrZelrNfXps708H/K6dFP9Xoay - 5lu3DN205uMhjx9XSszK4oJFlZiIxU3/qbCKkL0WVTXDMi0ASXuR4EtKqm6y5bt0A2UOdXciTEIB - b8DWmry/7AkJ8KYDioHnKoUKIlDC7SniPEXBVCNJkgnSAPA24bXR1Ds5GwEnUdciCicFMkiKptiF - VbntvIG0Z4M270D0j08UP0ywQetHttOJ3XLAyD6Xn0Fi04oTEBZkT/IdYeeMzdm0cRPC3NHyDwAA - //+Ml1GO5DYMRP91K0IfugDvf5aI75V6ZtMbIJNg0bZliipWFWkBS4iJNbvcdyYKYF9sqIYwU+hN - 0XlhanqosQnNqikkJalgdi93rzbwjVoeZrK6G8x/nO2Y3rCqZosCx4YokyAHWOR2rxt0Q6tZ0iyp - +5uQXN3X7vUAMqEK0lDn1YLS4m6QyZRf1B5ygztUmd1nARyUpbdScxAez7ItNEW25YZbRUyl2sOG - ujX5ErWupo4ITDjJ02DBxVTCE83N2Q9058DzUoPT5LwGXRKaAG4loKhxwhiiAGbitNHudU3iUHpt - k2vucQxKMvnP29tlFIVKzPXcKY+zCXWzGQxbXUGugRRoDwWrDr6lIg3abm09ikNV6txUk7vwymvC - FbQCQoGdWFSsTWOyYScSh6UtiIWuEqpL/jYFLkyO6jUZXmygTOtlRjgpf+sIvPPMYRIfXlFOzK2p - 1DCFhAkibi0NOQjvckCqM6IuVHGiGZ6tTnkolpgktycJ0tPyDisOnLTcyOMWXNfwjs8E8tWjyeCV - R6A4EWeD7Xsg1oFGBzBRKmMtvtaPxA2raRSoInCjx3UsxPnZfaKr/3QSybpPfoEhkQ9+MYxYr7Kc - Cw5LrRw8JCShvT87VfuUnO7DVQZt6/Ewff9//WN9tWq0JRSrNYeTDglFW4MvcXPxyIj6PYZR09pw - fC/vFaSkpHGpHY1hQjzCC3MqeX5U3x5NUQX2hiGfzGIP2WZvDe9U2mvupKksoDy/84BS9IKyMZEK - CO7fBNrRx+S7on1Uzw7ZgjZNG4lGEUlOryk/T5zm+4glqbEEyXAwRCXCahiVJfgTbyK1jd+8QsPS - 8r38bcUHbVqgmrYIZT3e/VvyMjLX9iAVzaKsQykDrh0ZfGTAyXeV1h9ZcjAsljNU6LYzTPWDrmPK - O5mvGBj3havTbKLJXREgkO3E2Dr4jujXywIhbaQCr0Zf2xfSBnL7iMGPa9gZWpZEgfqxnqxd41D2 - gB2LJbKabAcU6UfzctJKnOOgkeEE3ViE/dBHHIdGMrNfup3jkmMfk8Bz5KM4m43msZq1GhhQGgw/ - yyS2KdtoTKIdijyvsjgJeTTbcwuehkofOy7b7rztEV0qXdtNxU8awyyrNBg9pP76pwIZ234gq39B - tle9Bufordi36e4cwC7OtIieI/oND0B5lf2uo5mkQG8MZNDhjQHS4Qu3tesh8uzDLkXx4q+YoRPU - B7fxH2feSWJJ+pdp7F7g+rWub+B0xkxLdwe7ZmuphuunQuNzNkdpZeh3iu1GeK6lp/NmSvjvv++2 - ctqxahBZv7tKM+baRRzYGGw/XWVbL5pzZTKRAGvv/9NiPsYu9096H5tjouekl7wW47xdfnk5pL4W - 02kw9bcGk2/KPxpMpb3skyJqPvlUiAUzdWRMOp2ZVOcj/0xjR7t2DMtXHiNGAPnFw7U/LcxhShfJ - 7P6tiHwG/ihCy15+pHlSYKg3j8VPKOvnA+8rD9NYP8rcTuROedX/AAAA//9kmEsOxDAIQ/fcKmLB - Bbj/WWZiP5qo7aaq1I8LsbGTKw8KZT2j6AuFb95zSpm3cYxDzJolz3sTZrazi5AUSLTWQzqcL2Za - XBYhiFpJai9melFY0cKS1jyyl/HwTSzLNzHzPnlm/D8TbRmpydB9HLlY6dZLMighieKSWg1fSfhk - tUtrxd5RgsXeBcjc3AMwDlg11lz23MWV1sMR92xaQaVVxdAArcdoWk79N40W0cNG7uwayhsRNuMd - xOUcS/w9FuzhorEb9MngA6Tbo8QPAAD//wMA7dg88nISAAA= + string: '>NM_000551.3 Homo sapiens von Hippel-Lindau tumor suppressor (VHL), + transcript variant 1, mRNA + + CCTCGCCTCCGTTACAACGGCCTACGGTGCTGGAGGATCCTTCTGCGCACGCGCACAGCCTCCGGCCGGC + + TATTTCCGCGAGCGCGTTCCATCCTCTACCGAGCGCGCGCGAAGACTACGGAGGTCGACTCGGGAGCGCG + + CACGCAGCTCCGCCCCGCGTCCGACCCGCGGATCCCGCGGCGTCCGGCCCGGGTGGTCTGGATCGCGGAG + + GGAATGCCCCGGAGGGCGGAGAACTGGGACGAGGCCGAGGTAGGCGCGGAGGAGGCAGGCGTCGAAGAGT + + ACGGCCCTGAAGAAGACGGCGGGGAGGAGTCGGGCGCCGAGGAGTCCGGCCCGGAAGAGTCCGGCCCGGA + + GGAACTGGGCGCCGAGGAGGAGATGGAGGCCGGGCGGCCGCGGCCCGTGCTGCGCTCGGTGAACTCGCGC + + GAGCCCTCCCAGGTCATCTTCTGCAATCGCAGTCCGCGCGTCGTGCTGCCCGTATGGCTCAACTTCGACG + + GCGAGCCGCAGCCCTACCCAACGCTGCCGCCTGGCACGGGCCGCCGCATCCACAGCTACCGAGGTCACCT + + TTGGCTCTTCAGAGATGCAGGGACACACGATGGGCTTCTGGTTAACCAAACTGAATTATTTGTGCCATCT + + CTCAATGTTGACGGACAGCCTATTTTTGCCAATATCACACTGCCAGTGTATACTCTGAAAGAGCGATGCC + + TCCAGGTTGTCCGGAGCCTAGTCAAGCCTGAGAATTACAGGAGACTGGACATCGTCAGGTCGCTCTACGA + + AGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTGGAGCGGCTGACACAGGAGCGCATTGCACATCAA + + CGGATGGGAGATTGAAGATTTCTGTTGAAACTTACACTGTTTCATCTCAGCTTTTGATGGTACTGATGAG + + TCTTGATCTAGATACAGGACTGGTTCCTTCCTTAGTTTCAAAGTGTCTCATTCTCAGAGTAAAATAGGCA + + CCATTGCTTAAAAGAAAGTTAACTGACTTCACTAGGCATTGTGATGTTTAGGGGCAAACATCACAAAATG + + TAATTTAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGCTTCCTAGTAAG + + TCAGGACAGCTTGTATGTAAGGAGGTTTGTATAAGTAATTCAGTGGGAATTGCAGCATATCGTTTAATTT + + TAAGAAGGCATTGGCATCTGCTTTTAATGGATGTATAATACATCCATTCTACATCCGTAGCGGTTGGTGA + + CTTGTCTGCCTCCTGCTTTGGGAAGACTGAGGCATCCGTGAGGCAGGGACAAGTCTTTCTCCTCTTTGAG + + ACCCCAGTGCCTGCACATCATGAGCCTTCAGTCAGGGTTTGTCAGAGGAACAAACCAGGGGACACTTTGT + + TAGAAAGTGCTTAGAGGTTCTGCCTCTATTTTTGTTGGGGGGTGGGAGAGGGGACCTTAAAATGTGTACA + + GTGAACAAATGTCTTAAAGGGAATCATTTTTGTAGGAAGCATTTTTTATAATTTTCTAAGTCGTGCACTT + + TCTCGGTCCACTCTTGTTGAAGTGCTGTTTTATTACTGTTTCTAAACTAGGATTGACATTCTACAGTTGT + + GATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGAAAATCTGCATGTTTGATTATAGTA + + TTAATGGACAAATAAGTTTTTGCTAAATGTGAGTATTTCTGTTCCTTTTTGTAAATATGTGACATTCCTG + + ATTGATTTGGGTTTTTTTGTTGTTGTTGTTTTGTTTTGTTTTGTTTTTTTGAGATGGAGTCTCACTCTTG + + TCACCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACGTAATC + + CTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCACGCTGGCCAATTTTTGTACTTTTAGTAGAGACAG + + TGTTTCGCCATGTTGGCCAGGCTGGTTTCAAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCCCA + + AAATGGTGGGATTACAGGTGTGTGGGCCACCGTGCCTGGCTGATTCAGCATTTTTTATCAGGCAGGACCA + + GGTGGCACTTCCACCTCCAGCCTCTGGTCCTACCAATGGATTCATGGAGTAGCCTGGACTGTTTCATAGT + + TTTCTAAATGTACAAATTCTTATAGGCTAGACTTAGATTCATTAACTCAAATTCAATGCTTCTATCAGAC + + TCAGTTTTTTGTAACTAATAGATTTTTTTTTCCACTTTTGTTCTACTCCTTCCCTAATAGCTTTTTAAAA + + AAATCTCCCCAGTAGAGAAACATTTGGAAAAGACAGAAAACTAAAAAGGAAGAAAAAAGATCCCTATTAG + + ATACACTTCTTAAATACAATCACATTAACATTTTGAGCTATTTCCTTCCAGCCTTTTTAGGGCAGATTTT + + GGTTGGTTTTTACATAGTTGAGATTGTACTGTTCATACAGTTTTATACCCTTTTTCATTTAACTTTATAA + + CTTAAATATTGCTCTATGTTAGTATAAGCTTTTCACAAACATTAGTATAGTCTCCCTTTTATAATTAATG + + TTTGTGGGTATTTCTTGGCATGCATCTTTAATTCCTTATCCTAGCCTTTGGGCACAATTCCTGTGCTCAA + + AAATGAGAGTGACGGCTGGCATGGTGGCTCCCGCCTGTAATCCCAGTACTTTGGAAAGCCAAGGTAAGAG + + GATTGCTTGAGCCCAGAACTTCAAGATGAGCCTGGGCTCATAGTGAGAACCCATCTATACAAAAAATTTT + + TAAAAATTAGCATGGCGGCACACATCTGTAATCCTAGCTACTTGGCAGGCTGAGGTGAGAAGATCATTGG + + AGTTTAGGAATTGGAGGCTGCAGTGAGCCATGAGTATGCCACTGCACTCCAGCCTGGGGGACAGAGCAAG + + ACCCTGCCTCAAAAAAAAAAAAAAAAAAAAAATCAGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGC + + ACTTTGGGAGGTCGAGGTGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTAA + + AACCCCATTTCTACTAAAAAATACAAGAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCTAGCTACT + + CAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGAAGATTGCAGTGAGCTGATATCGCACCAT + + TGTACTCCAGCCTGTGTGACAGAGCAATACTCTTGTCTCAAAAAAAAAAAAAAATTCAAATCAGAGTGAA + + GTGAATGAGACACTCCAGTTTTCCTTCTACTCCGAATTTCAACTGATTTTAGCTCCTCCTTTCAACATTC + + AACAAATAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCT + + GGAGTGCAGTGGTGCGATCTCTGCTCACTACAAGCTCTGCCTCCCGAGTTCAAGTGATTCTCCTGGCTCA + + CCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCATGCCTGGCTAATTTTGTGTTTTTAGTGGAGAC + + GGGGTTTCACCATGTTGTCCAGGATGGTCTTGATCTCCTGACCTTGTGATCCACCCACCTCAGCCTCCCA + + AAGTGCTGGGATTACAGGTGTGAGCCACCGCGTCCAGCCAGCTTTATTATTTTTTTTAAGCTGTCTTTGT + + GTCAAAATGATAGTTCATGCTCCTCTTGTTAAAACCTGCAGGCCGAGCACAGTGGCTCATGCCTGTAATC + + CCAGCATTTTGGGAGACCAAGGCGGATGGATCACCTGAGGTCAGGAGCTGAAGACCAGCCTGGCTAACAT + + GGTGAAACCTCATCTCCACTTAAAATACAAAAATTGCCGGCCGCGGCGGCTCATGCCTGTAATCCCAGCA + + CTTTGGGAGGCCTAGGCGGGTGGATCACGAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGGTGAAA + + CCCCGTCTCTATTAAAAAATAGAAAAAATTAGGCGGGCGTGGTGGTGAGCGCCTGTAGTCCCAGCTACTC + + GAGAGCCTGAGGCAGGAGAATGGCATGAACCTGGAAGGCGGAGCTTGCAGTGAGCTGAGATGGTGCCACT + + GCACTCTAACCTGGGCGACAGAGTGAGACACCGTCTCAAAAAAAAAAACAAAAAACAAAAATTATCCAGG + + TGTGGCGGTGGGCGCCTGTGAGGCAGGCGAATCTCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAG + + ATCACACCATTGCACTCCAGCCTGGGCAACAAGAGTGAAATTCCATCTCAAAAAGAAACCAAAAAAACAA + + AAAAAAAACATGCCGTTTGAGTACTGTGTTTTTGGTGTTGTCCAAGGAAAATTAAAAACCTGTAGCATGA + + ATAATGTTTGTTTTTCATTTCGAATCTTGTGAATGTATTAAATATATCGCTCTTAAGAGACGGTGAAGTT + + CCTATTTCAAGTTTTTTTTTTTTTTTTTTTTTTTAAAGCTGTTTTTTAATACATTAAATGGTGCTGAGTA + + AAGGAAATAG + + + ' headers: Access-Control-Allow-Origin: - '*' @@ -60,20 +167,20 @@ interactions: Content-Type: - text/plain Date: - - Fri, 15 Sep 2023 22:59:49 GMT + - Fri, 03 Jan 2025 04:01:56 GMT Keep-Alive: - timeout=4, max=40 NCBI-PHID: - - 322C409D773A9D45000043BAC8C84FA1.1.1.m_5 + - D0BD4D15A8D0CB65000032CA6350E6BF.1.1.m_5 NCBI-SID: - - 74F4837FFF66AC90_1486SID + - 558C347478E67CC7_DCE8SID Referrer-Policy: - origin-when-cross-origin Server: - Finatra Set-Cookie: - - ncbi_sid=74F4837FFF66AC90_1486SID; domain=.nih.gov; path=/; expires=Sun, 15 - Sep 2024 22:59:49 GMT + - ncbi_sid=558C347478E67CC7_DCE8SID; domain=.nih.gov; path=/; expires=Sat, 03 + Jan 2026 04:01:56 GMT Strict-Transport-Security: - max-age=31536000; includeSubDomains; preload Transfer-Encoding: @@ -81,7 +188,7 @@ interactions: X-RateLimit-Limit: - '3' X-RateLimit-Remaining: - - '2' + - '1' X-UA-Compatible: - IE=Edge X-XSS-Protection: @@ -101,28 +208,82 @@ interactions: Connection: - keep-alive User-Agent: - - python-requests/2.31.0 + - python-requests/2.32.3 method: GET uri: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NM_001256125.1&rettype=fasta&tool=bioutils&email=biocommons-dev@googlegroups.com response: body: - string: !!binary | - H4sIAAAAAAAAADRRPWvDUAzc/Sve2EIocaAdC0KD0qEZivZiQqBviBNs09/fu1MaeMrp807y++nz - e78fD69veC9jO96ut7ZO936Z13b+6Vufp/XSxvbkx48cn3dtW6Z5PS/9vrXfaenTvLXDrl2/TjaY - p3tG8EXQmFshB7A0/IKIBkkWKoT/zIw0gIEu8sy607GKpDMNBIOAppKEs9BdWXWhJQc8dwWpqMJO - BWKTD4g2FFkNosqk5tINcVJDETWYpRSeKfleMpOD6QBTJkYoLPEUHjaIRFyPjeQR6QYAHuRNV7/u - E1Rnjz1BbMalFK1zchEqQG+IgBzYzXRbHlSrVTb/75QxuC6hVVVXAwTK6uPxFqVEJBF/AAAA//9U - lcttAzEMRO/siuBBDbD/WqyZN9oghgM7Xoki5yf9NuHlHlwNHAeAON7o9nwwjUcwHBPeG6SBS4S7 - ygPNHQoWLVfHwcxEa0+b+zahQkHA3V9KrGmqSfnoaz8gbumgqT10tIiDedVHreFUsW0DpJdJEQXq - wgsb6mgTfDzP3axTC72tF6gMvhgOiXqWbThAct3oxS3qr7Ty2FcGeOg/QrNQPavdZgXTC75Dfndt - 6X+fGL0fMD8fjj5N8NzfMUfcmbreVdad5IosNuPYGQLI7AU9N7YJAlTmt5mypxc7up01yb0o/cEU - X6aF+JaZjuR3CXVVPDg+h85zvvZZI5BI40bUktcQFRtGD1YtQB1sPenW0GhNp/aiDnquia/3jwYj - aL1IUxZ2murHecKJrGoxtcavnXL4c2LUzxOGZPZ5I8VGo0L0Tb9DUBwSINmXEAy1y9wCA0+O6+3M - y4XqpPl8hM9rxyeiEsXKMi6IexSspWVFU5vYBurdjY7yxNlHoCYv1i9OsIqBK0p2M8n0tfHVMhdJ - pllgbXR3UErFx0Sto7gNpuMXetXZeRwn/ZwRfOppLfrhNPzFrdSMiAzAeJzWzxH6gLu9ummKN1sj - NzPMfZMEQUBM2Au4TZjaDE3oIhht79j9eC+7gINWBvMkwAg1eypcKjmbcHfBl3OwdJ8aN6fh5s55 - 6V/LdWEGTq5+a8EDnHm3Jl/bzBNB5C2XXA327ndD+KJkENi/X21Tt9q5JuldrdlTW/NIOC9uuFGx - H8OTu8ZZYDHJRlqSwS3DHZvc+v+q+gEAAP//AwAXvbVrSwkAAA== + string: '>NM_001256125.1 Homo sapiens chitinase 1 (CHIT1), transcript variant + 2, mRNA + + ACTCCTGGCTGGGGTGGGACAGGGTGGCCAGATAAAAGCAGAGCAGGACCTGGAAAGCTGGTTTGTATGG + + GCTGCAGCCTGCCGCTGAGCTGCATCATGGTGCGGTCTGTGGCCTGGGCAGGTTTCATGGTCCTGCTGAT + + GATCCCATGGGGCTCTGCTGCAAAACTGGTCTGCTACTTCACCAACTGGGCCCAGTACAGACAGGGGGAG + + GCTCGCTTCCTGCCCAAGGACTTGGACCCCAGCCTTTGCACCCACCTCATCTACGCCTTCGCTGGCATGA + + CCAACCACCAGCTGAGCACCACTGAGTGGAATGACGAGACTCTCTACCAGGAGTTCAATGGCCTGAAGAA + + GATGTTCACAGATATGGTAGCCACGGCCAACAACCGTCAGACCTTTGTCAACTCGGCCATCAGGTTTCTG + + CGCAAATACAGCTTTGACGGCCTTGACCTTGACTGGGAGTACCCAGGAAGCCAGGGGAGCCCTGCCGTAG + + ACAAGGAGCGCTTCACAACCCTGGTACAGGACTTGGCCAATGCCTTCCAGCAGGAAGCCCAGACCTCAGG + + GAAGGAACGCCTTCTTCTGAGTGCAGCGGTTCCAGCTGGGCAGACCTATGTGGATGCTGGATACGAGGTG + + GACAAAATCGCCCAGAACCTGGATTTTGTCAACCTTATGGCCTACGACTTCCATGGCTCTTGGGAGAAGG + + TCACGGGACATAACAGCCCCCTCTACAAGAGGCAAGAAGAGAGTGGTGCAGCAGCCAGCCTCAACGTGGA + + TGCTGCTGTGCAACAGTGGCTGCAGAAGGGGACCCCTGCCAGCAAGCTGATCCTTGGCATGCCTACCTAC + + GGACGCTCCTTCACACTGGCCTCCTCATCAGACACCAGAGTGGGGGCCCCAGCCACAGGGTCTGGCACTC + + CAGGCCCCTTCACCAAGGAAGGAGGGATGCTGGCCTACTATGAAGTCTGCTCCTGGAAGGGGGCCACCAA + + ACAGAGAATCCAGGATCAGAAGGTGCCCTACATCTTCCGGGACAACCAGTGGGTGGGCTTTGATGATGTG + + GAGAGCTTCAAAACCAAGGTCAGCTATCTGAAGCAGAAGGGACTGGGCGGGGCCATGGTCTGGGCACTGG + + ACTTAGATGACTTTGCCGGCTTCTCCTGCAACCAGGGCCGATACCCCCTCATCCAGACGCTACGGCAGGA + + ACTGAGTCTTCCATACTTGCCTTCAGGCACCCCAGAGCTTGAAGTTCCAAAACCAGGTCAGCCCTCTGAA + + CCTGAGCATGGCCCCAGCCCTGGACAAGACACGTTCTGCCAGGGCAAAGCTGATGGGCTCTATCCCAATC + + CTCGGGAACGGTCCAGCTTCTACAGCTGTGCAGCGGGGCGGCTGTTCCAGCAAAGCTGCCCGACAGGCCT + + GGTGTTCAGCAACTCCTGCAAATGCTGCACCTGGAATTGAGTCGCTAAAGCCCCTCCAGTCCCAGCTTTG + + AGGCTGGGCCCAGGATCACTCTACAGCCTGCCTCCTGGGTTTTCCCTGGGGGCCGCAATCTGGCTCCTGC + + AGGCCTTTCTGTGGTCTTCCTTTATCCAGGCTTTCTGCTCTCAGCCTTGCCTTCCTTTTTTCTGGGTCTC + + CTGGGCTGCCCCTTTCACTTGCAAAATAAATCTTTGGTTTGTGCCCCTCTTCCCAAAGATGTGGTGACTT + + AAGAGGCTCTCTAAGCACACTGTTGACTCCAAAACATCCGCAGGTCAGAGCCAGGTGGGAAGGTGGTCCG + + TGCAGGATGTGCCAGGCCCTGTGGCAGGTCTTGCCCCATGAGTCCATATGCCAGTGGGCAGTTTCCAGTA + + CACAGGTGATGGCAGCCAGAGCGCGGCCCCAAGTGCAACACGTTCTTTGGTTATTGGCTCAGAAGCCTGG + + AAACAGGAGCTTCTGCGGACCTTCACGCACGTGTTATTCCCAAAATGCCACTAGATGGCAGCAGAGAAGA + + ACTTTTCCCTGATTTAAGCGCTCTGCGAGCAGCCACTCAGCATTACACTAAGAATTCAGACCCCTGGTAC + + TCAGGGGTCTTCGAGATAAATCCTGTTTGGGCCCTTTGCAGGCCCTATCTCACCTACTGCCCCCGTTCAC + + CAGATGAAGAAGGAACAATGATTATTCTCACTTTATAGGCATTTAAACTGAAGACTGATTCTAACCAATT + + CTGAGTCCAGAACCAAGGCCTGAAATGGGCCAGAGAGCATGCACACGGTGTCCTGGTTAAATAAAGTCAT + + CCCAACATTCAAAAAAAAAAAAAAAAAA + + + ' headers: Access-Control-Allow-Origin: - '*' @@ -139,20 +300,20 @@ interactions: Content-Type: - text/plain Date: - - Fri, 15 Sep 2023 22:59:53 GMT + - Fri, 03 Jan 2025 04:01:57 GMT Keep-Alive: - timeout=4, max=40 NCBI-PHID: - - 322C409D773A9D45000031BAD2B40051.1.1.m_5 + - D0BD4D15A8D0CB65000040CA64B4B911.1.1.m_5 NCBI-SID: - - 8273700B4CF77965_7E71SID + - 110641016BF13CAB_D94CSID Referrer-Policy: - origin-when-cross-origin Server: - Finatra Set-Cookie: - - ncbi_sid=8273700B4CF77965_7E71SID; domain=.nih.gov; path=/; expires=Sun, 15 - Sep 2024 22:59:52 GMT + - ncbi_sid=110641016BF13CAB_D94CSID; domain=.nih.gov; path=/; expires=Sat, 03 + Jan 2026 04:01:57 GMT Strict-Transport-Security: - max-age=31536000; includeSubDomains; preload Transfer-Encoding: @@ -160,7 +321,7 @@ interactions: X-RateLimit-Limit: - '3' X-RateLimit-Remaining: - - '2' + - '1' X-UA-Compatible: - IE=Edge X-XSS-Protection: