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poetry.lock
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# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
[[package]]
name = "annotated-types"
version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
files = [
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{file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
]
[[package]]
name = "appdirs"
version = "1.4.4"
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
optional = false
python-versions = "*"
files = [
{file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"},
{file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"},
]
[[package]]
name = "biocypher"
version = "0.6.0"
description = "A unifying framework for biomedical research knowledge graphs"
optional = false
python-versions = "<4.0,>=3.9"
files = [
{file = "biocypher-0.6.0-py3-none-any.whl", hash = "sha256:a3685c736c5505c588deb22c1bcdb7b7d90ea41cead8be4ae9969a09bef0fbd6"},
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]
[package.dependencies]
appdirs = "*"
more_itertools = "*"
neo4j-utils = "0.0.7"
networkx = ">=3.0,<4.0"
pandas = ">=2.0.1,<3.0.0"
pooch = ">=1.7.0,<2.0.0"
PyYAML = ">=5.0"
rdflib = ">=6.2.0,<7.0.0"
stringcase = ">=1.2.0,<2.0.0"
tqdm = ">=4.65.0,<5.0.0"
treelib = "1.6.4"
[[package]]
name = "bioregistry"
version = "0.11.19"
description = "Integrated registry of biological databases and nomenclatures"
optional = false
python-versions = ">=3.9"
files = [
{file = "bioregistry-0.11.19-py3-none-any.whl", hash = "sha256:c0d591c823c13f84d30cd52e25041b3352fc2b4943544c99002bbf13c4ceef95"},
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]
[package.dependencies]
click = "*"
curies = ">=0.7.0"
more-click = ">=0.1.2"
pydantic = "*"
pystow = ">=0.1.13"
requests = "*"
tqdm = "*"
[package.extras]
align = ["beautifulsoup4", "class-resolver", "defusedxml", "fairsharing-client (>=0.1.0)", "pandas", "pyyaml", "tabulate"]
charts = ["jinja2", "matplotlib", "matplotlib-venn", "pandas", "seaborn"]
docs = ["autodoc-pydantic", "sphinx (>=8)", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme (>=3.0)"]
export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
gha = ["more-itertools"]
health = ["click-default-group", "jinja2", "pandas", "pyyaml", "tabulate"]
tests = ["coverage", "httpx", "more-itertools", "pytest"]
web = ["a2wsgi", "bootstrap-flask (<=2.0.0)", "curies[fastapi]", "fastapi", "flask (<2.2.4)", "markdown", "pyyaml", "rdflib", "rdflib-endpoint", "rdflib-jsonld", "uvicorn", "werkzeug (<2.3.0)"]
[[package]]
name = "certifi"
version = "2024.8.30"
description = "Python package for providing Mozilla's CA Bundle."
optional = false
python-versions = ">=3.6"
files = [
{file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"},
{file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"},
]
[[package]]
name = "charset-normalizer"
version = "3.4.0"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
optional = false
python-versions = ">=3.7.0"
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