diff --git a/.github/workflows/citation.yaml b/.github/workflows/citation.yaml new file mode 100644 index 0000000..14d1622 --- /dev/null +++ b/.github/workflows/citation.yaml @@ -0,0 +1,30 @@ +name: Sync Citation.cff + +on: + schedule: + - cron: '0 0 * * 1' # Runs every Monday + push: + branches: + - master + +jobs: + sync: + runs-on: ubuntu-latest + steps: + - name: Checkout repo + uses: actions/checkout@v2 + with: + repository: bioexcel/biobb_common + path: ./ + + - name: Download file using wget + run: wget -O ./CITATION.cff https://raw.githubusercontent.com/bioexcel/biobb/master/CITATION.cff + + - name: Check if file has changed + run: ls -la ./ + + - name: Commit and push changes if file has changed + run: | + git config --global user.name 'github-actions[bot]' + git config --global user.email 'github-actions[bot]@users.noreply.github.com' + git diff --exit-code CITATION.cff || (git add CITATION.cff && git commit -m "Updated CITATION.cff" && git push) \ No newline at end of file diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..c05ac24 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,102 @@ +abstract: "BioExcel Building Blocks (BioBB) library. BioBB's are built as Python wrappers to provide an interoperable architecture. BioBB's have been integrated in a chain of usual software management tools to generate data ontologies, documentation, installation packages, software containers and ways of integration with workflow managers, that make them usable in most computational environments." +authors: + - affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Andrio" + given-names: "Pau" + orcid: "https://orcid.org/0000-0003-2116-3880" + - affiliation: "Institute for Research in Biomedicine (IRB Barcelona)" + family-names: "Hospital" + given-names: "Adam" + orcid: "https://orcid.org/0000-0002-8291-8071" + - affiliation: "Institute for Research in Biomedicine (IRB Barcelona)" + family-names: "Bayarri" + given-names: "Genís" + orcid: "https://orcid.org/0000-0003-0513-0288" + - affiliation: "Institute for Research in Biomedicine (IRB Barcelona)" + family-names: "García" + given-names: "Agustín" + orcid: "https://orcid.org/0009-0002-2159-965X" + - affiliation: "Institute for Research in Biomedicine (IRB Barcelona), University of Barcelona (UB)" + family-names: "Orozco" + given-names: "Modesto" + orcid: "https://orcid.org/0000-0002-8608-3278" + - affiliation: "Barcelona Supercomputing Center (BSC), University of Barcelona (UB)" + family-names: "Gelpí" + given-names: "Josep Ll." + orcid: "https://orcid.org/0000-0002-0566-7723" + email: "gelpi@ub.edu" +cff-version: 1.2.0 +date-released: "2019-09-10" +keywords: + - "BioExcel" + - "BioBB" + - "Bioinformatics" + - "Computational Biology" + - "Biomolecular Workflows" +license: "Apache-2.0" +message: "If you use this dataset, please cite it using the metadata from this file." +repository-code: "https://github.com/bioexcel/biobb" +title: "BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows" +doi: "10.1038/s41597-019-0177-4" +url: "https://mmb.irbbarcelona.org/biobb/" +version: 4.2.0 +preferred-citation: + type: "article" + authors: + - affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Andrio" + given-names: "Pau" + orcid: "https://orcid.org/0000-0003-2116-3880" + - affiliation: "Institute for Research in Biomedicine (IRB Barcelona)" + family-names: "Hospital" + given-names: "Adam" + orcid: "https://orcid.org/0000-0002-8291-8071" + - affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Conejero" + given-names: "Javier" + orcid: "https://orcid.org/0000-0001-6401-6229" + - affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Jordà" + given-names: "Luis" + orcid: "https://orcid.org/0000-0002-9407-9703" + - affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Del Pino" + given-names: "Marc" + orcid: "https://orcid.org/0000-0001-5565-7577" + - affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Laia" + given-names: "Codó" + orcid: "https://orcid.org/0000-0002-6797-8746" + - affiliation: "University of Manchester (UOM)" + family-names: "Soiland-Reyes" + given-names: "Stian" + orcid: "https://orcid.org/0000-0001-9842-9718" + - affiliation: "University of Manchester (UOM)" + family-names: "Goble" + given-names: "Carole" + orcid: "https://orcid.org/0000-0003-1219-2137" + - affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Lezzi" + given-names: "Daniele" + orcid: "https://orcid.org/0000-0001-5081-7244" + - affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Badia" + given-names: "Rosa M" + orcid: "https://orcid.org/0000-0003-2941-5499" + - affiliation: "Institute for Research in Biomedicine (IRB Barcelona), University of Barcelona (UB)" + family-names: "Orozco" + given-names: "Modesto" + orcid: "https://orcid.org/0000-0002-8608-3278" + - affiliation: "Barcelona Supercomputing Center (BSC), University of Barcelona (UB)" + family-names: "Gelpí" + given-names: "Josep Ll." + orcid: "https://orcid.org/0000-0002-0566-7723" + email: "gelpi@ub.edu" + doi: "10.1038/s41597-019-0177-4" + journal: "Nature Scientific Data" + month: 9 + start: 169 + title: "BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows" + issue: 1 + volume: 6 + year: 2019 diff --git a/references.jsonld b/references.jsonld new file mode 100644 index 0000000..1546f4a --- /dev/null +++ b/references.jsonld @@ -0,0 +1,11 @@ +{ + "@context": "http://schema.org", + "@type": "SoftwareApplication", + "name": "BioExcel Building Blocks", + "description": "The BioExcel Building Blocks (BioBB) library is a collection of portable wrappers on top of common biomolecular simulation tools.", + "url": "https://mmb.irbbarcelona.org/biobb", + "applicationCategory": "Computational Biology tool", + "citation": "https://www.nature.com/articles/s41597-019-0177-4", + "license": "https://www.apache.org/licenses/LICENSE-2.0", + "softwareVersion": "4.2.0" +} \ No newline at end of file