diff --git a/README.md b/README.md index 4fd30521..0c2ddde4 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![](https://img.shields.io/conda/vn/bioconda/biobb_dna?label=Conda)](https://anaconda.org/bioconda/biobb_dna) [![](https://img.shields.io/conda/dn/bioconda/biobb_dna?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_dna) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_dna?tab=tags) -[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0) +[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_dna) [![](https://img.shields.io/pypi/pyversions/biobb-dna.svg?label=Python%20Versions)](https://pypi.org/project/biobb-dna/) @@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb-dna.readthedocs.io/en/latest/). ### Version -v4.2.3 2024.1 +v4.2.4 2024.1 ### Installation Using PIP: @@ -51,7 +51,7 @@ Using PIP: * Installation: - pip install "biobb_dna>=4.2.3" + pip install "biobb_dna>=4.2.4" * Usage: [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) @@ -61,7 +61,7 @@ Using ANACONDA: * Installation: - conda install -c bioconda "biobb_dna>=4.2.3" + conda install -c bioconda "biobb_dna>=4.2.4" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-dna.readthedocs.io/en/latest/command_line.html) @@ -71,13 +71,13 @@ Using DOCKER: * Installation: - docker pull quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0 + docker pull quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0 * Usage: - docker run quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0 + docker run quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0 Using SINGULARITY: @@ -86,7 +86,7 @@ Using SINGULARITY: * Installation: - singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0 + singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0 * Usage: diff --git a/biobb_dna/__init__.py b/biobb_dna/__init__.py index c2be4bf7..e717aa2e 100644 --- a/biobb_dna/__init__.py +++ b/biobb_dna/__init__.py @@ -1,4 +1,4 @@ name = "biobb_dna" __all__ = ["dna", "curvesplus", "backbone", "stiffness", "interbp_correlations", "intrabp_correlations"] -__version__ = "4.2.3" +__version__ = "4.2.4" diff --git a/biobb_dna/docs/source/change_log.md b/biobb_dna/docs/source/change_log.md index bbf1cd88..c9685607 100644 --- a/biobb_dna/docs/source/change_log.md +++ b/biobb_dna/docs/source/change_log.md @@ -1,7 +1,7 @@ # Biobb Analysis changelog -## What's new in version [4.2.3](https://github.com/bioexcel/biobb_dna/releases/tag/v4.2.3)? -In version 4.2.3 some bugs in Canion and Curves have been fixed. Added two new tools: CanalUnzip and DnaTimeseriesUnzip. +## What's new in version [4.2.4](https://github.com/bioexcel/biobb_dna/releases/tag/v4.2.4)? +In version 4.2.4 some bugs in Canion and Curves have been fixed. Added two new tools: CanalUnzip and DnaTimeseriesUnzip. ### New features diff --git a/biobb_dna/docs/source/conf.py b/biobb_dna/docs/source/conf.py index f5d94464..786b2de8 100644 --- a/biobb_dna/docs/source/conf.py +++ b/biobb_dna/docs/source/conf.py @@ -74,9 +74,9 @@ # built documents. # # The short X.Y version. -version = u'4.2.3' +version = u'4.2.4' # The full version, including alpha/beta/rc tags. -release = u'4.2.3' +release = u'4.2.4' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/biobb_dna/docs/source/readme.md b/biobb_dna/docs/source/readme.md index 4fd30521..0c2ddde4 100644 --- a/biobb_dna/docs/source/readme.md +++ b/biobb_dna/docs/source/readme.md @@ -3,7 +3,7 @@ [![](https://img.shields.io/conda/vn/bioconda/biobb_dna?label=Conda)](https://anaconda.org/bioconda/biobb_dna) [![](https://img.shields.io/conda/dn/bioconda/biobb_dna?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_dna) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_dna?tab=tags) -[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0) +[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_dna) [![](https://img.shields.io/pypi/pyversions/biobb-dna.svg?label=Python%20Versions)](https://pypi.org/project/biobb-dna/) @@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb-dna.readthedocs.io/en/latest/). ### Version -v4.2.3 2024.1 +v4.2.4 2024.1 ### Installation Using PIP: @@ -51,7 +51,7 @@ Using PIP: * Installation: - pip install "biobb_dna>=4.2.3" + pip install "biobb_dna>=4.2.4" * Usage: [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) @@ -61,7 +61,7 @@ Using ANACONDA: * Installation: - conda install -c bioconda "biobb_dna>=4.2.3" + conda install -c bioconda "biobb_dna>=4.2.4" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-dna.readthedocs.io/en/latest/command_line.html) @@ -71,13 +71,13 @@ Using DOCKER: * Installation: - docker pull quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0 + docker pull quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0 * Usage: - docker run quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0 + docker run quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0 Using SINGULARITY: @@ -86,7 +86,7 @@ Using SINGULARITY: * Installation: - singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0 + singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0 * Usage: diff --git a/biobb_dna/docs/source/schema.html b/biobb_dna/docs/source/schema.html index a012e694..4274e890 100644 --- a/biobb_dna/docs/source/schema.html +++ b/biobb_dna/docs/source/schema.html @@ -10,7 +10,7 @@ "applicationSubCategory": "http://www.edamontology.org/topic_3892", "citation": "https://www.nature.com/articles/s41597-019-0177-4", "license": "https://www.apache.org/licenses/LICENSE-2.0", - "softwareVersion": "4.2.3", + "softwareVersion": "4.2.4", "applicationSuite": "BioBB BioExcel Building Blocks", "codeRepository": "https://github.com/bioexcel/biobb_dna", "isAccessibleForFree": "True", diff --git a/biobb_dna/json_schemas/biobb_dna.json b/biobb_dna/json_schemas/biobb_dna.json index 3a643545..2c6f5205 100644 --- a/biobb_dna/json_schemas/biobb_dna.json +++ b/biobb_dna/json_schemas/biobb_dna.json @@ -4,9 +4,9 @@ "github": "https://github.com/bioexcel/biobb_dna", "readthedocs": "https://biobb-dna.readthedocs.io/en/latest/", "conda": "https://anaconda.org/bioconda/biobb_dna", - "docker": "https://quay.io/biocontainers/biobb_dna:4.2.3--pyhdfd78af_0", - "singularity": "https://depot.galaxyproject.org/singularity/biobb_dna:4.2.3--pyhdfd78af_0", - "version": "4.2.3", + "docker": "https://quay.io/biocontainers/biobb_dna:4.2.4--pyhdfd78af_0", + "singularity": "https://depot.galaxyproject.org/singularity/biobb_dna:4.2.4--pyhdfd78af_0", + "version": "4.2.4", "rest": true, "tools": [ { diff --git a/setup.py b/setup.py index 47d02c2d..c3bca3ce 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ setuptools.setup( name="biobb_dna", - version="4.2.3", + version="4.2.4", author="Biobb developers", author_email="genis.bayarri@irbbarcelona.com", description="Biobb_dna is a package composed of different analyses for nucleic acid trajectories.", @@ -27,9 +27,11 @@ "console_scripts": [ "biobb_curves = biobb_dna.curvesplus.biobb_curves:main", "biobb_canal = biobb_dna.curvesplus.biobb_canal:main", + "canal_unzip = biobb_dna.curvesplus.canal_unzip:main", "biobb_canion = biobb_dna.curvesplus.biobb_canion:main", "dna_averages = biobb_dna.dna.dna_averages:main", "dna_timeseries = biobb_dna.dna.dna_timeseries:main", + "dna_timeseries_unzip = biobb_dna.dna.dna_timeseries_unzip:main", "dna_bimodality = biobb_dna.dna.dna_bimodality:main", "bipopulations = biobb_dna.backbone.bipopulations:main", "canonicalag = biobb_dna.backbone.canonicalag:main",