diff --git a/README.md b/README.md index 1435b99b..92ba7c79 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![](https://img.shields.io/conda/vn/bioconda/biobb_dna?label=Conda)](https://anaconda.org/bioconda/biobb_dna) [![](https://img.shields.io/conda/dn/bioconda/biobb_dna?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_dna) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_dna?tab=tags) -[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.1.0--pyhdfd78af_0) +[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.0--pyhdfd78af_0) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_dna) [![](https://img.shields.io/pypi/pyversions/biobb-dna.svg?label=Python%20Versions)](https://pypi.org/project/biobb-dna/) @@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb-dna.readthedocs.io/en/latest/). ### Version -v4.1.0 2023.3 +v4.2.0 2024.1 ### Installation Using PIP: @@ -51,7 +51,7 @@ Using PIP: * Installation: - pip install "biobb_dna>=4.1.0" + pip install "biobb_dna>=4.2.0" * Usage: [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) @@ -61,7 +61,7 @@ Using ANACONDA: * Installation: - conda install -c bioconda "biobb_dna>=4.1.0" + conda install -c bioconda "biobb_dna>=4.2.0" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-dna.readthedocs.io/en/latest/command_line.html) @@ -71,13 +71,13 @@ Using DOCKER: * Installation: - docker pull quay.io/biocontainers/biobb_dna:4.1.0--pyhdfd78af_0 + docker pull quay.io/biocontainers/biobb_dna:4.2.0--pyhdfd78af_0 * Usage: - docker run quay.io/biocontainers/biobb_dna:4.1.0--pyhdfd78af_0 + docker run quay.io/biocontainers/biobb_dna:4.2.0--pyhdfd78af_0 Using SINGULARITY: @@ -86,7 +86,7 @@ Using SINGULARITY: * Installation: - singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.1.0--pyhdfd78af_0 + singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.0--pyhdfd78af_0 * Usage: diff --git a/biobb_dna/__init__.py b/biobb_dna/__init__.py index 797a5530..e41cca87 100644 --- a/biobb_dna/__init__.py +++ b/biobb_dna/__init__.py @@ -1,4 +1,4 @@ name = "biobb_dna" __all__ = ["dna", "curvesplus", "backbone", "stiffness", "interbp_correlations", "intrabp_correlations"] -__version__ = "4.1.0" +__version__ = "4.2.0" diff --git a/biobb_dna/docs/source/change_log.md b/biobb_dna/docs/source/change_log.md index 95b2dae5..38e0d2c9 100644 --- a/biobb_dna/docs/source/change_log.md +++ b/biobb_dna/docs/source/change_log.md @@ -1,5 +1,12 @@ # Biobb Analysis changelog +## What's new in version [4.2.0](https://github.com/bioexcel/biobb_dna/releases/tag/v4.2.0)? +In version 4.2.0 the dependency biobb_common has been updated to 4.2.0 version. + +### New features + +* Update to biobb_common 4.2.0 (general) + ## What's new in version [4.1.0](https://github.com/bioexcel/biobb_dna/releases/tag/v4.1.0)? In version 4.1.0 the dependency biobb_common has been updated to 4.1.0 version. diff --git a/biobb_dna/docs/source/conf.py b/biobb_dna/docs/source/conf.py index 8c550964..dc156552 100644 --- a/biobb_dna/docs/source/conf.py +++ b/biobb_dna/docs/source/conf.py @@ -74,9 +74,9 @@ # built documents. # # The short X.Y version. -version = u'4.1.0' +version = u'4.2.0' # The full version, including alpha/beta/rc tags. -release = u'4.1.0' +release = u'4.2.0' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/biobb_dna/docs/source/readme.md b/biobb_dna/docs/source/readme.md index 1435b99b..92ba7c79 100644 --- a/biobb_dna/docs/source/readme.md +++ b/biobb_dna/docs/source/readme.md @@ -3,7 +3,7 @@ [![](https://img.shields.io/conda/vn/bioconda/biobb_dna?label=Conda)](https://anaconda.org/bioconda/biobb_dna) [![](https://img.shields.io/conda/dn/bioconda/biobb_dna?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_dna) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_dna?tab=tags) -[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.1.0--pyhdfd78af_0) +[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_dna:4.2.0--pyhdfd78af_0) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_dna) [![](https://img.shields.io/pypi/pyversions/biobb-dna.svg?label=Python%20Versions)](https://pypi.org/project/biobb-dna/) @@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb-dna.readthedocs.io/en/latest/). ### Version -v4.1.0 2023.3 +v4.2.0 2024.1 ### Installation Using PIP: @@ -51,7 +51,7 @@ Using PIP: * Installation: - pip install "biobb_dna>=4.1.0" + pip install "biobb_dna>=4.2.0" * Usage: [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) @@ -61,7 +61,7 @@ Using ANACONDA: * Installation: - conda install -c bioconda "biobb_dna>=4.1.0" + conda install -c bioconda "biobb_dna>=4.2.0" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-dna.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-dna.readthedocs.io/en/latest/command_line.html) @@ -71,13 +71,13 @@ Using DOCKER: * Installation: - docker pull quay.io/biocontainers/biobb_dna:4.1.0--pyhdfd78af_0 + docker pull quay.io/biocontainers/biobb_dna:4.2.0--pyhdfd78af_0 * Usage: - docker run quay.io/biocontainers/biobb_dna:4.1.0--pyhdfd78af_0 + docker run quay.io/biocontainers/biobb_dna:4.2.0--pyhdfd78af_0 Using SINGULARITY: @@ -86,7 +86,7 @@ Using SINGULARITY: * Installation: - singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.1.0--pyhdfd78af_0 + singularity pull --name biobb_dna.sif https://depot.galaxyproject.org/singularity/biobb_dna:4.2.0--pyhdfd78af_0 * Usage: diff --git a/biobb_dna/docs/source/schema.html b/biobb_dna/docs/source/schema.html index 6cd1bf38..110ecd12 100644 --- a/biobb_dna/docs/source/schema.html +++ b/biobb_dna/docs/source/schema.html @@ -10,7 +10,7 @@ "applicationSubCategory": "http://www.edamontology.org/topic_3892", "citation": "https://www.nature.com/articles/s41597-019-0177-4", "license": "https://www.apache.org/licenses/LICENSE-2.0", - "softwareVersion": "4.1.0", + "softwareVersion": "4.2.0", "applicationSuite": "BioBB BioExcel Building Blocks", "codeRepository": "https://github.com/bioexcel/biobb_dna", "isAccessibleForFree": "True", diff --git a/biobb_dna/json_schemas/biobb_dna.json b/biobb_dna/json_schemas/biobb_dna.json index fe1711fd..46a060ea 100644 --- a/biobb_dna/json_schemas/biobb_dna.json +++ b/biobb_dna/json_schemas/biobb_dna.json @@ -4,9 +4,9 @@ "github": "https://github.com/bioexcel/biobb_dna", "readthedocs": "https://biobb-dna.readthedocs.io/en/latest/", "conda": "https://anaconda.org/bioconda/biobb_dna", - "docker": "https://quay.io/biocontainers/biobb_dna:4.1.0--pyhdfd78af_0", - "singularity": "https://depot.galaxyproject.org/singularity/biobb_dna:4.1.0--pyhdfd78af_0", - "version": "4.1.0", + "docker": "https://quay.io/biocontainers/biobb_dna:4.2.0--pyhdfd78af_0", + "singularity": "https://depot.galaxyproject.org/singularity/biobb_dna:4.2.0--pyhdfd78af_0", + "version": "4.2.0", "rest": true, "tools": [ { @@ -147,12 +147,12 @@ } ], "dep_pypi": [ - "install_requires=['biobb_common==4.1.0', 'pandas>=1.3.0', 'scikit-learn==0.24.2']", + "install_requires=['biobb_common==4.2.0', 'pandas>=1.3.0', 'scikit-learn==0.24.2']", "python_requires='>=3.8'" ], "dep_conda": [ "python >=3.8", - "biobb_common ==4.1.0", + "biobb_common ==4.2.0", "curves==3.0.0", "pandas>=1.3.0", "scikit-learn==0.24.2" diff --git a/setup.py b/setup.py index 5884e4ce..c8587e42 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ setuptools.setup( name="biobb_dna", - version="4.1.0", + version="4.2.0", author="Biobb developers", author_email="lucia.fabio@irbbarcelona.com", description="Biobb_dna is a package composed of different analyses for nucleic acid trajectories.", @@ -19,7 +19,7 @@ }, packages=setuptools.find_packages(exclude=['adapters', 'docs', 'test']), install_requires=[ - 'biobb_common==4.1.0', + 'biobb_common==4.2.0', 'pandas>=1.3.0', 'scikit-learn==0.24.2'], python_requires='>=3.8',