From c1ab6dad04034a60cfb05887e4977b5f88b0424b Mon Sep 17 00:00:00 2001
From: gbayarri <genis.bayarri@irbbarcelona.org>
Date: Thu, 27 Jun 2024 09:46:48 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20bioexcel?=
 =?UTF-8?q?/biobb=5Fdna@b641cf140139efad31fa2b92311776b86b1fca37=20?=
 =?UTF-8?q?=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 coverage/class_index.html                     |   4 +-
 coverage/coverage.xml                         | 526 +++++++--------
 coverage/function_index.html                  |  92 +--
 coverage/index.html                           |   4 +-
 coverage/status.json                          |   2 +-
 ...20f76a90aa51c7b_test_bipopulations_py.html |   4 +-
 ...aa51c7b_test_canonical_alpha_gamma_py.html |   4 +-
 .../z_020f76a90aa51c7b_test_puckering_py.html |   4 +-
 .../z_100f5897bddc1993_test_averages_py.html  |   4 +-
 ...z_100f5897bddc1993_test_bimodality_py.html |   4 +-
 ...z_100f5897bddc1993_test_timeseries_py.html |   4 +-
 ...5897bddc1993_test_timeseries_unzip_py.html |   4 +-
 coverage/z_159731231e5c9c9d___init___py.html  |   4 +-
 .../z_159731231e5c9c9d_bipopulations_py.html  |   4 +-
 .../z_159731231e5c9c9d_canonicalag_py.html    |   4 +-
 coverage/z_159731231e5c9c9d_puckering_py.html |   4 +-
 coverage/z_3afbcd666ed82c91___init___py.html  |   4 +-
 .../z_3afbcd666ed82c91_dna_averages_py.html   |   4 +-
 .../z_3afbcd666ed82c91_dna_bimodality_py.html |   4 +-
 .../z_3afbcd666ed82c91_dna_timeseries_py.html |   4 +-
 ...bcd666ed82c91_dna_timeseries_unzip_py.html | 407 ++++++------
 coverage/z_64e03be4370b7ecc___init___py.html  |   4 +-
 .../z_64e03be4370b7ecc_intrabpcorr_py.html    |   4 +-
 .../z_64e03be4370b7ecc_intrahpcorr_py.html    | 613 +++++++++---------
 .../z_64e03be4370b7ecc_intraseqcorr_py.html   |   4 +-
 coverage/z_74fa14c6d0e940a4___init___py.html  |   4 +-
 .../z_74fa14c6d0e940a4_biobb_canal_py.html    |   4 +-
 .../z_74fa14c6d0e940a4_biobb_canion_py.html   |   4 +-
 .../z_74fa14c6d0e940a4_biobb_curves_py.html   |   4 +-
 .../z_74fa14c6d0e940a4_canal_unzip_py.html    | 387 +++++------
 coverage/z_76997f7c8cf1ed45___init___py.html  |   6 +-
 .../z_8030ef0ea5bfd6aa_test_canal_py.html     |   4 +-
 ..._8030ef0ea5bfd6aa_test_canal_unzip_py.html |   4 +-
 .../z_8030ef0ea5bfd6aa_test_canion_py.html    |   4 +-
 .../z_8030ef0ea5bfd6aa_test_curves_py.html    |   4 +-
 coverage/z_833b0317e3c43dca___init___py.html  |   4 +-
 coverage/z_833b0317e3c43dca_constants_py.html |   4 +-
 coverage/z_833b0317e3c43dca_loader_py.html    |   4 +-
 coverage/z_833b0317e3c43dca_transform_py.html |   4 +-
 coverage/z_8a2a7f872cf1434f___init___py.html  |   4 +-
 .../z_8a2a7f872cf1434f_interbpcorr_py.html    |   4 +-
 .../z_8a2a7f872cf1434f_interhpcorr_py.html    | 609 +++++++++--------
 .../z_8a2a7f872cf1434f_interseqcorr_py.html   |   4 +-
 coverage/z_957b841f7413f0a1___init___py.html  |   4 +-
 ..._97f47455ed834d2d_test_correlation_py.html |   4 +-
 coverage/z_9de9475b0a6fab52___init___py.html  |   4 +-
 ...9de9475b0a6fab52_average_stiffness_py.html |   4 +-
 ...de9475b0a6fab52_basepair_stiffness_py.html |   4 +-
 .../z_cda7f8e8576a7189_test_stiffness_py.html |   4 +-
 flake8/index.html                             |   2 +-
 junit/junit.xml                               |   2 +-
 junit/report.html                             |   6 +-
 52 files changed, 1408 insertions(+), 1408 deletions(-)

diff --git a/coverage/class_index.html b/coverage/class_index.html
index b70fd1d6..4184a1d1 100644
--- a/coverage/class_index.html
+++ b/coverage/class_index.html
@@ -55,7 +55,7 @@ <h2>
         </h2>
         <p class="text">
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </header>
@@ -748,7 +748,7 @@ <h2>
     <div class="content">
         <p>
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
     <aside class="hidden">
diff --git a/coverage/coverage.xml b/coverage/coverage.xml
index b4d3bf08..cda83fed 100644
--- a/coverage/coverage.xml
+++ b/coverage/coverage.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" ?>
-<coverage version="7.5.4" timestamp="1719479305648" lines-valid="2336" lines-covered="1837" line-rate="0.7864" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
+<coverage version="7.5.4" timestamp="1719481599957" lines-valid="2336" lines-covered="1837" line-rate="0.7864" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
 	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.5.4 -->
 	<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
 	<sources>
@@ -658,78 +658,78 @@
 						<line number="11" hits="1"/>
 						<line number="12" hits="1"/>
 						<line number="15" hits="1"/>
-						<line number="52" hits="1"/>
-						<line number="54" hits="1"/>
-						<line number="57" hits="1"/>
+						<line number="53" hits="1"/>
+						<line number="55" hits="1"/>
 						<line number="58" hits="1"/>
-						<line number="61" hits="1"/>
-						<line number="72" hits="1"/>
+						<line number="59" hits="1"/>
+						<line number="62" hits="1"/>
 						<line number="73" hits="1"/>
 						<line number="74" hits="1"/>
 						<line number="75" hits="1"/>
-						<line number="78" hits="1"/>
+						<line number="76" hits="1"/>
 						<line number="79" hits="1"/>
-						<line number="81" hits="1"/>
+						<line number="80" hits="1"/>
 						<line number="82" hits="1"/>
-						<line number="86" hits="1"/>
-						<line number="87" hits="0"/>
-						<line number="88" hits="1"/>
-						<line number="91" hits="1"/>
-						<line number="92" hits="0"/>
-						<line number="94" hits="0"/>
-						<line number="97" hits="1"/>
-						<line number="98" hits="0"/>
-						<line number="100" hits="0"/>
-						<line number="103" hits="1"/>
-						<line number="104" hits="0"/>
-						<line number="106" hits="0"/>
-						<line number="108" hits="1"/>
-						<line number="114" hits="1"/>
-						<line number="115" hits="0"/>
-						<line number="117" hits="0"/>
-						<line number="120" hits="1"/>
+						<line number="83" hits="1"/>
+						<line number="87" hits="1"/>
+						<line number="88" hits="0"/>
+						<line number="89" hits="1"/>
+						<line number="92" hits="1"/>
+						<line number="93" hits="0"/>
+						<line number="95" hits="0"/>
+						<line number="98" hits="1"/>
+						<line number="99" hits="0"/>
+						<line number="101" hits="0"/>
+						<line number="104" hits="1"/>
+						<line number="105" hits="0"/>
+						<line number="107" hits="0"/>
+						<line number="109" hits="1"/>
+						<line number="115" hits="1"/>
+						<line number="116" hits="0"/>
+						<line number="118" hits="0"/>
 						<line number="121" hits="1"/>
-						<line number="123" hits="0"/>
+						<line number="122" hits="1"/>
 						<line number="124" hits="0"/>
 						<line number="125" hits="0"/>
-						<line number="127" hits="0"/>
+						<line number="126" hits="0"/>
 						<line number="128" hits="0"/>
-						<line number="131" hits="1"/>
-						<line number="137" hits="0"/>
-						<line number="139" hits="0"/>
-						<line number="140" hits="1"/>
-						<line number="143" hits="1"/>
-						<line number="146" hits="1"/>
-						<line number="148" hits="1"/>
-						<line number="150" hits="1"/>
-						<line number="152" hits="1"/>
+						<line number="129" hits="0"/>
+						<line number="132" hits="1"/>
+						<line number="138" hits="0"/>
+						<line number="140" hits="0"/>
+						<line number="141" hits="1"/>
+						<line number="144" hits="1"/>
+						<line number="147" hits="1"/>
+						<line number="149" hits="1"/>
+						<line number="151" hits="1"/>
 						<line number="153" hits="1"/>
-						<line number="155" hits="0"/>
+						<line number="154" hits="1"/>
 						<line number="156" hits="0"/>
-						<line number="159" hits="1"/>
+						<line number="157" hits="0"/>
 						<line number="160" hits="1"/>
 						<line number="161" hits="1"/>
 						<line number="162" hits="1"/>
-						<line number="168" hits="1"/>
-						<line number="171" hits="1"/>
-						<line number="174" hits="1"/>
-						<line number="176" hits="1"/>
-						<line number="178" hits="1"/>
-						<line number="181" hits="1"/>
-						<line number="190" hits="1"/>
-						<line number="197" hits="1"/>
-						<line number="199" hits="0"/>
-						<line number="201" hits="0"/>
-						<line number="203" hits="0"/>
+						<line number="163" hits="1"/>
+						<line number="169" hits="1"/>
+						<line number="172" hits="1"/>
+						<line number="175" hits="1"/>
+						<line number="177" hits="1"/>
+						<line number="179" hits="1"/>
+						<line number="182" hits="1"/>
+						<line number="191" hits="1"/>
+						<line number="198" hits="1"/>
+						<line number="200" hits="0"/>
+						<line number="202" hits="0"/>
 						<line number="204" hits="0"/>
-						<line number="206" hits="0"/>
-						<line number="208" hits="0"/>
-						<line number="211" hits="0"/>
+						<line number="205" hits="0"/>
+						<line number="207" hits="0"/>
+						<line number="209" hits="0"/>
 						<line number="212" hits="0"/>
 						<line number="213" hits="0"/>
-						<line number="215" hits="0"/>
-						<line number="222" hits="1"/>
-						<line number="223" hits="0"/>
+						<line number="214" hits="0"/>
+						<line number="216" hits="0"/>
+						<line number="223" hits="1"/>
+						<line number="224" hits="0"/>
 					</lines>
 				</class>
 			</classes>
@@ -1119,81 +1119,81 @@
 						<line number="11" hits="1"/>
 						<line number="12" hits="1"/>
 						<line number="15" hits="1"/>
-						<line number="56" hits="1"/>
-						<line number="58" hits="1"/>
-						<line number="61" hits="1"/>
+						<line number="57" hits="1"/>
+						<line number="59" hits="1"/>
 						<line number="62" hits="1"/>
-						<line number="65" hits="1"/>
-						<line number="77" hits="1"/>
+						<line number="63" hits="1"/>
+						<line number="66" hits="1"/>
 						<line number="78" hits="1"/>
 						<line number="79" hits="1"/>
 						<line number="80" hits="1"/>
 						<line number="81" hits="1"/>
-						<line number="84" hits="1"/>
+						<line number="82" hits="1"/>
 						<line number="85" hits="1"/>
-						<line number="87" hits="1"/>
+						<line number="86" hits="1"/>
 						<line number="88" hits="1"/>
-						<line number="92" hits="1"/>
-						<line number="93" hits="0"/>
-						<line number="94" hits="1"/>
-						<line number="97" hits="1"/>
-						<line number="98" hits="0"/>
-						<line number="100" hits="0"/>
-						<line number="103" hits="1"/>
-						<line number="104" hits="0"/>
-						<line number="106" hits="0"/>
-						<line number="109" hits="1"/>
-						<line number="113" hits="0"/>
-						<line number="115" hits="0"/>
-						<line number="118" hits="1"/>
+						<line number="89" hits="1"/>
+						<line number="93" hits="1"/>
+						<line number="94" hits="0"/>
+						<line number="95" hits="1"/>
+						<line number="98" hits="1"/>
+						<line number="99" hits="0"/>
+						<line number="101" hits="0"/>
+						<line number="104" hits="1"/>
+						<line number="105" hits="0"/>
+						<line number="107" hits="0"/>
+						<line number="110" hits="1"/>
+						<line number="114" hits="0"/>
+						<line number="116" hits="0"/>
 						<line number="119" hits="1"/>
-						<line number="120" hits="0"/>
-						<line number="122" hits="0"/>
-						<line number="125" hits="1"/>
-						<line number="126" hits="0"/>
-						<line number="128" hits="0"/>
-						<line number="131" hits="1"/>
-						<line number="134" hits="1"/>
+						<line number="120" hits="1"/>
+						<line number="121" hits="0"/>
+						<line number="123" hits="0"/>
+						<line number="126" hits="1"/>
+						<line number="127" hits="0"/>
+						<line number="129" hits="0"/>
+						<line number="132" hits="1"/>
 						<line number="135" hits="1"/>
 						<line number="136" hits="1"/>
-						<line number="139" hits="1"/>
-						<line number="141" hits="1"/>
-						<line number="143" hits="1"/>
-						<line number="145" hits="1"/>
+						<line number="137" hits="1"/>
+						<line number="140" hits="1"/>
+						<line number="142" hits="1"/>
+						<line number="144" hits="1"/>
 						<line number="146" hits="1"/>
-						<line number="148" hits="0"/>
+						<line number="147" hits="1"/>
 						<line number="149" hits="0"/>
-						<line number="152" hits="1"/>
-						<line number="154" hits="1"/>
-						<line number="156" hits="1"/>
+						<line number="150" hits="0"/>
+						<line number="153" hits="1"/>
+						<line number="155" hits="1"/>
 						<line number="157" hits="1"/>
-						<line number="159" hits="0"/>
+						<line number="158" hits="1"/>
 						<line number="160" hits="0"/>
-						<line number="163" hits="1"/>
+						<line number="161" hits="0"/>
 						<line number="164" hits="1"/>
 						<line number="165" hits="1"/>
 						<line number="166" hits="1"/>
-						<line number="172" hits="1"/>
-						<line number="175" hits="1"/>
-						<line number="178" hits="1"/>
-						<line number="180" hits="1"/>
-						<line number="182" hits="1"/>
-						<line number="185" hits="1"/>
-						<line number="195" hits="1"/>
-						<line number="203" hits="1"/>
-						<line number="205" hits="0"/>
-						<line number="207" hits="0"/>
-						<line number="209" hits="0"/>
+						<line number="167" hits="1"/>
+						<line number="173" hits="1"/>
+						<line number="176" hits="1"/>
+						<line number="179" hits="1"/>
+						<line number="181" hits="1"/>
+						<line number="183" hits="1"/>
+						<line number="186" hits="1"/>
+						<line number="196" hits="1"/>
+						<line number="204" hits="1"/>
+						<line number="206" hits="0"/>
+						<line number="208" hits="0"/>
 						<line number="210" hits="0"/>
-						<line number="212" hits="0"/>
-						<line number="214" hits="0"/>
-						<line number="216" hits="0"/>
-						<line number="219" hits="0"/>
+						<line number="211" hits="0"/>
+						<line number="213" hits="0"/>
+						<line number="215" hits="0"/>
+						<line number="217" hits="0"/>
 						<line number="220" hits="0"/>
 						<line number="221" hits="0"/>
-						<line number="223" hits="0"/>
-						<line number="231" hits="1"/>
-						<line number="232" hits="0"/>
+						<line number="222" hits="0"/>
+						<line number="224" hits="0"/>
+						<line number="232" hits="1"/>
+						<line number="233" hits="0"/>
 					</lines>
 				</class>
 			</classes>
@@ -1365,88 +1365,89 @@
 						<line number="12" hits="1"/>
 						<line number="13" hits="1"/>
 						<line number="16" hits="1"/>
-						<line number="66" hits="1"/>
-						<line number="72" hits="1"/>
+						<line number="65" hits="1"/>
+						<line number="71" hits="1"/>
+						<line number="74" hits="1"/>
 						<line number="75" hits="1"/>
-						<line number="76" hits="1"/>
-						<line number="79" hits="1"/>
+						<line number="78" hits="1"/>
+						<line number="93" hits="1"/>
 						<line number="94" hits="1"/>
-						<line number="95" hits="1"/>
+						<line number="97" hits="1"/>
 						<line number="98" hits="1"/>
-						<line number="99" hits="1"/>
+						<line number="100" hits="1"/>
 						<line number="101" hits="1"/>
-						<line number="102" hits="1"/>
-						<line number="106" hits="1"/>
-						<line number="107" hits="0"/>
-						<line number="108" hits="1"/>
+						<line number="105" hits="1"/>
+						<line number="106" hits="0"/>
+						<line number="107" hits="1"/>
+						<line number="110" hits="1"/>
 						<line number="111" hits="1"/>
 						<line number="112" hits="1"/>
 						<line number="113" hits="1"/>
 						<line number="114" hits="1"/>
 						<line number="115" hits="1"/>
-						<line number="116" hits="1"/>
+						<line number="118" hits="1"/>
 						<line number="119" hits="1"/>
-						<line number="120" hits="1"/>
+						<line number="122" hits="1"/>
 						<line number="123" hits="1"/>
-						<line number="124" hits="1"/>
-						<line number="129" hits="1"/>
-						<line number="131" hits="1"/>
-						<line number="133" hits="1"/>
-						<line number="135" hits="1"/>
-						<line number="137" hits="1"/>
-						<line number="140" hits="1"/>
-						<line number="142" hits="1"/>
-						<line number="144" hits="1"/>
-						<line number="146" hits="1"/>
-						<line number="148" hits="1"/>
-						<line number="152" hits="1"/>
-						<line number="154" hits="1"/>
-						<line number="156" hits="1"/>
-						<line number="158" hits="1"/>
-						<line number="161" hits="1"/>
-						<line number="163" hits="1"/>
-						<line number="165" hits="1"/>
-						<line number="167" hits="1"/>
-						<line number="171" hits="1"/>
-						<line number="173" hits="1"/>
-						<line number="175" hits="1"/>
-						<line number="178" hits="1"/>
-						<line number="180" hits="1"/>
-						<line number="182" hits="1"/>
-						<line number="186" hits="1"/>
-						<line number="188" hits="1"/>
-						<line number="191" hits="1"/>
-						<line number="193" hits="1"/>
-						<line number="197" hits="1"/>
-						<line number="200" hits="1"/>
-						<line number="203" hits="1"/>
+						<line number="128" hits="1"/>
+						<line number="130" hits="1"/>
+						<line number="132" hits="1"/>
+						<line number="134" hits="1"/>
+						<line number="136" hits="1"/>
+						<line number="139" hits="1"/>
+						<line number="141" hits="1"/>
+						<line number="143" hits="1"/>
+						<line number="145" hits="1"/>
+						<line number="147" hits="1"/>
+						<line number="151" hits="1"/>
+						<line number="153" hits="1"/>
+						<line number="155" hits="1"/>
+						<line number="157" hits="1"/>
+						<line number="160" hits="1"/>
+						<line number="162" hits="1"/>
+						<line number="164" hits="1"/>
+						<line number="166" hits="1"/>
+						<line number="170" hits="1"/>
+						<line number="172" hits="1"/>
+						<line number="174" hits="1"/>
+						<line number="177" hits="1"/>
+						<line number="179" hits="1"/>
+						<line number="181" hits="1"/>
+						<line number="185" hits="1"/>
+						<line number="187" hits="1"/>
+						<line number="190" hits="1"/>
+						<line number="192" hits="1"/>
+						<line number="196" hits="1"/>
+						<line number="199" hits="1"/>
+						<line number="202" hits="1"/>
+						<line number="205" hits="1"/>
 						<line number="206" hits="1"/>
-						<line number="207" hits="1"/>
+						<line number="208" hits="1"/>
 						<line number="209" hits="1"/>
 						<line number="210" hits="1"/>
-						<line number="211" hits="1"/>
+						<line number="217" hits="1"/>
 						<line number="218" hits="1"/>
 						<line number="219" hits="1"/>
 						<line number="220" hits="1"/>
 						<line number="221" hits="1"/>
-						<line number="222" hits="1"/>
+						<line number="224" hits="1"/>
 						<line number="225" hits="1"/>
-						<line number="226" hits="1"/>
-						<line number="229" hits="1"/>
-						<line number="232" hits="1"/>
-						<line number="235" hits="1"/>
-						<line number="238" hits="1"/>
-						<line number="240" hits="1"/>
-						<line number="242" hits="1"/>
-						<line number="244" hits="1"/>
+						<line number="228" hits="1"/>
+						<line number="231" hits="1"/>
+						<line number="234" hits="1"/>
+						<line number="237" hits="1"/>
+						<line number="239" hits="1"/>
+						<line number="241" hits="1"/>
+						<line number="243" hits="1"/>
+						<line number="244" hits="0"/>
 						<line number="245" hits="0"/>
 						<line number="246" hits="0"/>
 						<line number="247" hits="0"/>
 						<line number="248" hits="0"/>
 						<line number="249" hits="0"/>
-						<line number="250" hits="0"/>
+						<line number="251" hits="0"/>
 						<line number="252" hits="0"/>
-						<line number="253" hits="0"/>
+						<line number="254" hits="1"/>
 						<line number="255" hits="1"/>
 						<line number="256" hits="1"/>
 						<line number="257" hits="1"/>
@@ -1455,7 +1456,7 @@
 						<line number="260" hits="1"/>
 						<line number="261" hits="1"/>
 						<line number="262" hits="1"/>
-						<line number="263" hits="1"/>
+						<line number="264" hits="1"/>
 						<line number="265" hits="1"/>
 						<line number="266" hits="1"/>
 						<line number="267" hits="1"/>
@@ -1467,27 +1468,26 @@
 						<line number="273" hits="1"/>
 						<line number="274" hits="1"/>
 						<line number="275" hits="1"/>
-						<line number="276" hits="1"/>
-						<line number="279" hits="1"/>
-						<line number="288" hits="1"/>
-						<line number="300" hits="1"/>
-						<line number="302" hits="0"/>
-						<line number="304" hits="0"/>
+						<line number="278" hits="1"/>
+						<line number="287" hits="1"/>
+						<line number="299" hits="1"/>
+						<line number="301" hits="0"/>
+						<line number="303" hits="0"/>
+						<line number="305" hits="0"/>
 						<line number="306" hits="0"/>
-						<line number="307" hits="0"/>
-						<line number="309" hits="0"/>
-						<line number="311" hits="0"/>
-						<line number="313" hits="0"/>
-						<line number="315" hits="0"/>
-						<line number="317" hits="0"/>
-						<line number="319" hits="0"/>
-						<line number="321" hits="0"/>
+						<line number="308" hits="0"/>
+						<line number="310" hits="0"/>
+						<line number="312" hits="0"/>
+						<line number="314" hits="0"/>
+						<line number="316" hits="0"/>
+						<line number="318" hits="0"/>
+						<line number="320" hits="0"/>
+						<line number="323" hits="0"/>
 						<line number="324" hits="0"/>
 						<line number="325" hits="0"/>
-						<line number="326" hits="0"/>
-						<line number="328" hits="0"/>
-						<line number="340" hits="1"/>
-						<line number="341" hits="0"/>
+						<line number="327" hits="0"/>
+						<line number="339" hits="1"/>
+						<line number="340" hits="0"/>
 					</lines>
 				</class>
 				<class name="interseqcorr.py" filename="biobb_dna/interbp_correlations/interseqcorr.py" complexity="0" line-rate="0.7097" branch-rate="0">
@@ -1757,88 +1757,89 @@
 						<line number="12" hits="1"/>
 						<line number="13" hits="1"/>
 						<line number="16" hits="1"/>
-						<line number="66" hits="1"/>
-						<line number="72" hits="1"/>
+						<line number="65" hits="1"/>
+						<line number="71" hits="1"/>
+						<line number="74" hits="1"/>
 						<line number="75" hits="1"/>
-						<line number="76" hits="1"/>
-						<line number="79" hits="1"/>
+						<line number="78" hits="1"/>
+						<line number="93" hits="1"/>
 						<line number="94" hits="1"/>
-						<line number="95" hits="1"/>
+						<line number="97" hits="1"/>
 						<line number="98" hits="1"/>
-						<line number="99" hits="1"/>
+						<line number="100" hits="1"/>
 						<line number="101" hits="1"/>
-						<line number="102" hits="1"/>
-						<line number="106" hits="1"/>
-						<line number="107" hits="0"/>
-						<line number="108" hits="1"/>
+						<line number="105" hits="1"/>
+						<line number="106" hits="0"/>
+						<line number="107" hits="1"/>
+						<line number="110" hits="1"/>
 						<line number="111" hits="1"/>
 						<line number="112" hits="1"/>
 						<line number="113" hits="1"/>
 						<line number="114" hits="1"/>
 						<line number="115" hits="1"/>
-						<line number="116" hits="1"/>
+						<line number="118" hits="1"/>
 						<line number="119" hits="1"/>
-						<line number="120" hits="1"/>
-						<line number="124" hits="1"/>
-						<line number="126" hits="1"/>
-						<line number="131" hits="1"/>
-						<line number="133" hits="1"/>
-						<line number="135" hits="1"/>
-						<line number="137" hits="1"/>
-						<line number="139" hits="1"/>
-						<line number="142" hits="1"/>
-						<line number="144" hits="1"/>
-						<line number="146" hits="1"/>
-						<line number="148" hits="1"/>
-						<line number="150" hits="1"/>
-						<line number="154" hits="1"/>
-						<line number="156" hits="1"/>
-						<line number="158" hits="1"/>
-						<line number="160" hits="1"/>
-						<line number="163" hits="1"/>
-						<line number="165" hits="1"/>
-						<line number="167" hits="1"/>
-						<line number="169" hits="1"/>
-						<line number="173" hits="1"/>
-						<line number="175" hits="1"/>
-						<line number="177" hits="1"/>
-						<line number="180" hits="1"/>
-						<line number="182" hits="1"/>
-						<line number="184" hits="1"/>
-						<line number="188" hits="1"/>
-						<line number="190" hits="1"/>
-						<line number="193" hits="1"/>
-						<line number="195" hits="1"/>
-						<line number="199" hits="1"/>
-						<line number="202" hits="1"/>
-						<line number="205" hits="1"/>
+						<line number="123" hits="1"/>
+						<line number="125" hits="1"/>
+						<line number="130" hits="1"/>
+						<line number="132" hits="1"/>
+						<line number="134" hits="1"/>
+						<line number="136" hits="1"/>
+						<line number="138" hits="1"/>
+						<line number="141" hits="1"/>
+						<line number="143" hits="1"/>
+						<line number="145" hits="1"/>
+						<line number="147" hits="1"/>
+						<line number="149" hits="1"/>
+						<line number="153" hits="1"/>
+						<line number="155" hits="1"/>
+						<line number="157" hits="1"/>
+						<line number="159" hits="1"/>
+						<line number="162" hits="1"/>
+						<line number="164" hits="1"/>
+						<line number="166" hits="1"/>
+						<line number="168" hits="1"/>
+						<line number="172" hits="1"/>
+						<line number="174" hits="1"/>
+						<line number="176" hits="1"/>
+						<line number="179" hits="1"/>
+						<line number="181" hits="1"/>
+						<line number="183" hits="1"/>
+						<line number="187" hits="1"/>
+						<line number="189" hits="1"/>
+						<line number="192" hits="1"/>
+						<line number="194" hits="1"/>
+						<line number="198" hits="1"/>
+						<line number="201" hits="1"/>
+						<line number="204" hits="1"/>
+						<line number="207" hits="1"/>
 						<line number="208" hits="1"/>
-						<line number="209" hits="1"/>
+						<line number="210" hits="1"/>
 						<line number="211" hits="1"/>
 						<line number="212" hits="1"/>
-						<line number="213" hits="1"/>
+						<line number="219" hits="1"/>
 						<line number="220" hits="1"/>
 						<line number="221" hits="1"/>
 						<line number="222" hits="1"/>
 						<line number="223" hits="1"/>
-						<line number="224" hits="1"/>
+						<line number="226" hits="1"/>
 						<line number="227" hits="1"/>
-						<line number="228" hits="1"/>
-						<line number="231" hits="1"/>
-						<line number="234" hits="1"/>
-						<line number="237" hits="1"/>
-						<line number="240" hits="1"/>
-						<line number="242" hits="1"/>
-						<line number="244" hits="1"/>
-						<line number="246" hits="1"/>
+						<line number="230" hits="1"/>
+						<line number="233" hits="1"/>
+						<line number="236" hits="1"/>
+						<line number="239" hits="1"/>
+						<line number="241" hits="1"/>
+						<line number="243" hits="1"/>
+						<line number="245" hits="1"/>
+						<line number="246" hits="0"/>
 						<line number="247" hits="0"/>
 						<line number="248" hits="0"/>
 						<line number="249" hits="0"/>
 						<line number="250" hits="0"/>
 						<line number="251" hits="0"/>
-						<line number="252" hits="0"/>
+						<line number="253" hits="0"/>
 						<line number="254" hits="0"/>
-						<line number="255" hits="0"/>
+						<line number="256" hits="1"/>
 						<line number="257" hits="1"/>
 						<line number="258" hits="1"/>
 						<line number="259" hits="1"/>
@@ -1847,7 +1848,7 @@
 						<line number="262" hits="1"/>
 						<line number="263" hits="1"/>
 						<line number="264" hits="1"/>
-						<line number="265" hits="1"/>
+						<line number="266" hits="1"/>
 						<line number="267" hits="1"/>
 						<line number="268" hits="1"/>
 						<line number="269" hits="1"/>
@@ -1859,27 +1860,26 @@
 						<line number="275" hits="1"/>
 						<line number="276" hits="1"/>
 						<line number="277" hits="1"/>
-						<line number="278" hits="1"/>
-						<line number="281" hits="1"/>
-						<line number="290" hits="1"/>
-						<line number="302" hits="1"/>
-						<line number="304" hits="0"/>
-						<line number="306" hits="0"/>
+						<line number="280" hits="1"/>
+						<line number="289" hits="1"/>
+						<line number="301" hits="1"/>
+						<line number="303" hits="0"/>
+						<line number="305" hits="0"/>
+						<line number="307" hits="0"/>
 						<line number="308" hits="0"/>
-						<line number="309" hits="0"/>
-						<line number="311" hits="0"/>
-						<line number="313" hits="0"/>
-						<line number="315" hits="0"/>
-						<line number="317" hits="0"/>
-						<line number="319" hits="0"/>
-						<line number="321" hits="0"/>
-						<line number="323" hits="0"/>
+						<line number="310" hits="0"/>
+						<line number="312" hits="0"/>
+						<line number="314" hits="0"/>
+						<line number="316" hits="0"/>
+						<line number="318" hits="0"/>
+						<line number="320" hits="0"/>
+						<line number="322" hits="0"/>
+						<line number="325" hits="0"/>
 						<line number="326" hits="0"/>
 						<line number="327" hits="0"/>
-						<line number="328" hits="0"/>
-						<line number="330" hits="0"/>
-						<line number="342" hits="1"/>
-						<line number="343" hits="0"/>
+						<line number="329" hits="0"/>
+						<line number="341" hits="1"/>
+						<line number="342" hits="0"/>
 					</lines>
 				</class>
 				<class name="intraseqcorr.py" filename="biobb_dna/intrabp_correlations/intraseqcorr.py" complexity="0" line-rate="0.7097" branch-rate="0">
diff --git a/coverage/function_index.html b/coverage/function_index.html
index 89721d2f..d1ee5fa6 100644
--- a/coverage/function_index.html
+++ b/coverage/function_index.html
@@ -55,7 +55,7 @@ <h2>
         </h2>
         <p class="text">
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </header>
@@ -409,32 +409,32 @@ <h2>
                 <td class="right" data-ratio="17 18">94%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t52">biobb_dna/curvesplus/canal_unzip.py</a></td>
-                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t52"><data value='init__'>CanalUnzip.__init__</data></a></td>
+                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t53">biobb_dna/curvesplus/canal_unzip.py</a></td>
+                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t53"><data value='init__'>CanalUnzip.__init__</data></a></td>
                 <td>10</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="10 10">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t82">biobb_dna/curvesplus/canal_unzip.py</a></td>
-                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t82"><data value='launch'>CanalUnzip.launch</data></a></td>
+                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t83">biobb_dna/curvesplus/canal_unzip.py</a></td>
+                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t83"><data value='launch'>CanalUnzip.launch</data></a></td>
                 <td>44</td>
                 <td>18</td>
                 <td>0</td>
                 <td class="right" data-ratio="26 44">59%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t181">biobb_dna/curvesplus/canal_unzip.py</a></td>
-                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t181"><data value='canal_unzip'>canal_unzip</data></a></td>
+                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t182">biobb_dna/curvesplus/canal_unzip.py</a></td>
+                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t182"><data value='canal_unzip'>canal_unzip</data></a></td>
                 <td>1</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="1 1">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t197">biobb_dna/curvesplus/canal_unzip.py</a></td>
-                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t197"><data value='main'>main</data></a></td>
+                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t198">biobb_dna/curvesplus/canal_unzip.py</a></td>
+                <td class="name left"><a href="z_74fa14c6d0e940a4_canal_unzip_py.html#t198"><data value='main'>main</data></a></td>
                 <td>10</td>
                 <td>10</td>
                 <td>0</td>
@@ -601,32 +601,32 @@ <h2>
                 <td class="right" data-ratio="18 19">95%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t56">biobb_dna/dna/dna_timeseries_unzip.py</a></td>
-                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t56"><data value='init__'>DnaTimeseriesUnzip.__init__</data></a></td>
+                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t57">biobb_dna/dna/dna_timeseries_unzip.py</a></td>
+                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t57"><data value='init__'>DnaTimeseriesUnzip.__init__</data></a></td>
                 <td>11</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="11 11">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t88">biobb_dna/dna/dna_timeseries_unzip.py</a></td>
-                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t88"><data value='launch'>DnaTimeseriesUnzip.launch</data></a></td>
+                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t89">biobb_dna/dna/dna_timeseries_unzip.py</a></td>
+                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t89"><data value='launch'>DnaTimeseriesUnzip.launch</data></a></td>
                 <td>45</td>
                 <td>15</td>
                 <td>0</td>
                 <td class="right" data-ratio="30 45">67%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t185">biobb_dna/dna/dna_timeseries_unzip.py</a></td>
-                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t185"><data value='dna_timeseries_unzip'>dna_timeseries_unzip</data></a></td>
+                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t186">biobb_dna/dna/dna_timeseries_unzip.py</a></td>
+                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t186"><data value='dna_timeseries_unzip'>dna_timeseries_unzip</data></a></td>
                 <td>1</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="1 1">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t203">biobb_dna/dna/dna_timeseries_unzip.py</a></td>
-                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t203"><data value='main'>main</data></a></td>
+                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t204">biobb_dna/dna/dna_timeseries_unzip.py</a></td>
+                <td class="name left"><a href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html#t204"><data value='main'>main</data></a></td>
                 <td>11</td>
                 <td>11</td>
                 <td>0</td>
@@ -705,56 +705,56 @@ <h2>
                 <td class="right" data-ratio="22 23">96%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t66">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t66"><data value='init__'>InterHelParCorrelation.__init__</data></a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t65">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t65"><data value='init__'>InterHelParCorrelation.__init__</data></a></td>
                 <td>8</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="8 8">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t102">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t102"><data value='launch'>InterHelParCorrelation.launch</data></a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t101">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t101"><data value='launch'>InterHelParCorrelation.launch</data></a></td>
                 <td>62</td>
                 <td>1</td>
                 <td>0</td>
                 <td class="right" data-ratio="61 62">98%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t244">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t244"><data value='get_corr_method'>InterHelParCorrelation.get_corr_method</data></a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t243">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t243"><data value='get_corr_method'>InterHelParCorrelation.get_corr_method</data></a></td>
                 <td>8</td>
                 <td>8</td>
                 <td>0</td>
                 <td class="right" data-ratio="0 8">0%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t256">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t256"><data value='circular'>InterHelParCorrelation.circular</data></a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t255">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t255"><data value='circular'>InterHelParCorrelation.circular</data></a></td>
                 <td>7</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="7 7">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t266">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t266"><data value='circlineal'>InterHelParCorrelation.circlineal</data></a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t265">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t265"><data value='circlineal'>InterHelParCorrelation.circlineal</data></a></td>
                 <td>10</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="10 10">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t279">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t279"><data value='interhpcorr'>interhpcorr</data></a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t278">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t278"><data value='interhpcorr'>interhpcorr</data></a></td>
                 <td>1</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="1 1">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t300">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
-                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t300"><data value='main'>main</data></a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t299">biobb_dna/interbp_correlations/interhpcorr.py</a></td>
+                <td class="name left"><a href="z_8a2a7f872cf1434f_interhpcorr_py.html#t299"><data value='main'>main</data></a></td>
                 <td>15</td>
                 <td>15</td>
                 <td>0</td>
@@ -881,56 +881,56 @@ <h2>
                 <td class="right" data-ratio="22 23">96%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t66">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t66"><data value='init__'>IntraHelParCorrelation.__init__</data></a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t65">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t65"><data value='init__'>IntraHelParCorrelation.__init__</data></a></td>
                 <td>8</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="8 8">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t102">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t102"><data value='launch'>IntraHelParCorrelation.launch</data></a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t101">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t101"><data value='launch'>IntraHelParCorrelation.launch</data></a></td>
                 <td>62</td>
                 <td>1</td>
                 <td>0</td>
                 <td class="right" data-ratio="61 62">98%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t246">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t246"><data value='get_corr_method'>IntraHelParCorrelation.get_corr_method</data></a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t245">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t245"><data value='get_corr_method'>IntraHelParCorrelation.get_corr_method</data></a></td>
                 <td>8</td>
                 <td>8</td>
                 <td>0</td>
                 <td class="right" data-ratio="0 8">0%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t258">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t258"><data value='circular'>IntraHelParCorrelation.circular</data></a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t257">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t257"><data value='circular'>IntraHelParCorrelation.circular</data></a></td>
                 <td>7</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="7 7">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t268">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t268"><data value='circlineal'>IntraHelParCorrelation.circlineal</data></a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t267">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t267"><data value='circlineal'>IntraHelParCorrelation.circlineal</data></a></td>
                 <td>10</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="10 10">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t281">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t281"><data value='intrahpcorr'>intrahpcorr</data></a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t280">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t280"><data value='intrahpcorr'>intrahpcorr</data></a></td>
                 <td>1</td>
                 <td>0</td>
                 <td>0</td>
                 <td class="right" data-ratio="1 1">100%</td>
             </tr>
             <tr class="region">
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t302">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
-                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t302"><data value='main'>main</data></a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t301">biobb_dna/intrabp_correlations/intrahpcorr.py</a></td>
+                <td class="name left"><a href="z_64e03be4370b7ecc_intrahpcorr_py.html#t301"><data value='main'>main</data></a></td>
                 <td>15</td>
                 <td>15</td>
                 <td>0</td>
@@ -1716,7 +1716,7 @@ <h2>
     <div class="content">
         <p>
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
     <aside class="hidden">
diff --git a/coverage/index.html b/coverage/index.html
index ffef4c2b..f479285a 100644
--- a/coverage/index.html
+++ b/coverage/index.html
@@ -54,7 +54,7 @@ <h2>
         </h2>
         <p class="text">
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </header>
@@ -397,7 +397,7 @@ <h2>
     <div class="content">
         <p>
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
     <aside class="hidden">
diff --git a/coverage/status.json b/coverage/status.json
index 625e1514..b05ee528 100644
--- a/coverage/status.json
+++ b/coverage/status.json
@@ -1 +1 @@
-{"note":"This file is an internal implementation detail to speed up HTML report generation. Its format can change at any time. You might be looking for the JSON report: https://coverage.rtfd.io/cmd.html#cmd-json","format":5,"version":"7.5.4","globals":"577c8923df28730261885525dcd00011","files":{"z_76997f7c8cf1ed45___init___py":{"hash":"b64b4a96ba324db2d9018ba43b564a80","index":{"url":"z_76997f7c8cf1ed45___init___py.html","file":"biobb_dna/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":3,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_159731231e5c9c9d___init___py":{"hash":"580af44eed061416b7d2f888e96da488","index":{"url":"z_159731231e5c9c9d___init___py.html","file":"biobb_dna/backbone/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_159731231e5c9c9d_bipopulations_py":{"hash":"43d4d8cbfb31edaaa857999e76f9afa1","index":{"url":"z_159731231e5c9c9d_bipopulations_py.html","file":"biobb_dna/backbone/bipopulations.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":97,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_159731231e5c9c9d_canonicalag_py":{"hash":"34e303f5e2b84a55d6104870606491a5","index":{"url":"z_159731231e5c9c9d_canonicalag_py.html","file":"biobb_dna/backbone/canonicalag.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":107,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_159731231e5c9c9d_puckering_py":{"hash":"727535f289f313efed6a12b3408de66f","index":{"url":"z_159731231e5c9c9d_puckering_py.html","file":"biobb_dna/backbone/puckering.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":102,"n_excluded":0,"n_missing":20,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4___init___py":{"hash":"c454a927fa5a54be1f0d1aea2530c53a","index":{"url":"z_74fa14c6d0e940a4___init___py.html","file":"biobb_dna/curvesplus/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4_biobb_canal_py":{"hash":"9c10336bd5fb28e6f747af7107dbd073","index":{"url":"z_74fa14c6d0e940a4_biobb_canal_py.html","file":"biobb_dna/curvesplus/biobb_canal.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":83,"n_excluded":0,"n_missing":23,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4_biobb_canion_py":{"hash":"a02c9bf2c4d7d5ce4412dc0f12c55092","index":{"url":"z_74fa14c6d0e940a4_biobb_canion_py.html","file":"biobb_dna/curvesplus/biobb_canion.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":80,"n_excluded":0,"n_missing":16,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4_biobb_curves_py":{"hash":"244a80f197e22b3aea052f48bb816b96","index":{"url":"z_74fa14c6d0e940a4_biobb_curves_py.html","file":"biobb_dna/curvesplus/biobb_curves.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":109,"n_excluded":0,"n_missing":29,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4_canal_unzip_py":{"hash":"29f6963bd56d6c0115411e8e509750bb","index":{"url":"z_74fa14c6d0e940a4_canal_unzip_py.html","file":"biobb_dna/curvesplus/canal_unzip.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":81,"n_excluded":0,"n_missing":29,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91___init___py":{"hash":"fa2d62abe6038dd1ed704b4fd0cd96b5","index":{"url":"z_3afbcd666ed82c91___init___py.html","file":"biobb_dna/dna/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91_dna_averages_py":{"hash":"5cc2774f94a20d9f1a5f992f12c12418","index":{"url":"z_3afbcd666ed82c91_dna_averages_py.html","file":"biobb_dna/dna/dna_averages.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":92,"n_excluded":0,"n_missing":25,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91_dna_bimodality_py":{"hash":"07e0999a79e2d0bfb8ee84fcf3e9a971","index":{"url":"z_3afbcd666ed82c91_dna_bimodality_py.html","file":"biobb_dna/dna/dna_bimodality.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":151,"n_excluded":0,"n_missing":47,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91_dna_timeseries_py":{"hash":"5153fceac58b00587d5dcf8fb5e713eb","index":{"url":"z_3afbcd666ed82c91_dna_timeseries_py.html","file":"biobb_dna/dna/dna_timeseries.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":106,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91_dna_timeseries_unzip_py":{"hash":"2427fe86cd78b883a3feb6d6057f8136","index":{"url":"z_3afbcd666ed82c91_dna_timeseries_unzip_py.html","file":"biobb_dna/dna/dna_timeseries_unzip.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":84,"n_excluded":0,"n_missing":27,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8a2a7f872cf1434f___init___py":{"hash":"67df46be23f0c6a378b927437bcdb3ae","index":{"url":"z_8a2a7f872cf1434f___init___py.html","file":"biobb_dna/interbp_correlations/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8a2a7f872cf1434f_interbpcorr_py":{"hash":"eec9f301966bf6867e6a654b4e32020e","index":{"url":"z_8a2a7f872cf1434f_interbpcorr_py.html","file":"biobb_dna/interbp_correlations/interbpcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":141,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8a2a7f872cf1434f_interhpcorr_py":{"hash":"bbee421047e4e96fc5c01639f1f3ae47","index":{"url":"z_8a2a7f872cf1434f_interhpcorr_py.html","file":"biobb_dna/interbp_correlations/interhpcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":132,"n_excluded":0,"n_missing":25,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8a2a7f872cf1434f_interseqcorr_py":{"hash":"e5065941f35e1830a95eb4bc79d1be04","index":{"url":"z_8a2a7f872cf1434f_interseqcorr_py.html","file":"biobb_dna/interbp_correlations/interseqcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":93,"n_excluded":0,"n_missing":27,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_64e03be4370b7ecc___init___py":{"hash":"0a07897e7f3f28f9a10cdd42a064cb13","index":{"url":"z_64e03be4370b7ecc___init___py.html","file":"biobb_dna/intrabp_correlations/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_64e03be4370b7ecc_intrabpcorr_py":{"hash":"7f8a5988ddda2c6d0db7c9747148e664","index":{"url":"z_64e03be4370b7ecc_intrabpcorr_py.html","file":"biobb_dna/intrabp_correlations/intrabpcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":141,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_64e03be4370b7ecc_intrahpcorr_py":{"hash":"408faacca5a149182cd762f04445f6c9","index":{"url":"z_64e03be4370b7ecc_intrahpcorr_py.html","file":"biobb_dna/intrabp_correlations/intrahpcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":132,"n_excluded":0,"n_missing":25,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_64e03be4370b7ecc_intraseqcorr_py":{"hash":"e72ddcc500502d87698fcd27ee851a1a","index":{"url":"z_64e03be4370b7ecc_intraseqcorr_py.html","file":"biobb_dna/intrabp_correlations/intraseqcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":93,"n_excluded":0,"n_missing":27,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_9de9475b0a6fab52___init___py":{"hash":"beb785844bf570c4fb1aa991c0e4d17a","index":{"url":"z_9de9475b0a6fab52___init___py.html","file":"biobb_dna/stiffness/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_9de9475b0a6fab52_average_stiffness_py":{"hash":"b4afbac438d5beda96ab48b2984de086","index":{"url":"z_9de9475b0a6fab52_average_stiffness_py.html","file":"biobb_dna/stiffness/average_stiffness.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":89,"n_excluded":0,"n_missing":24,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_9de9475b0a6fab52_basepair_stiffness_py":{"hash":"2db4dc817de38d4960600d4c798b2530","index":{"url":"z_9de9475b0a6fab52_basepair_stiffness_py.html","file":"biobb_dna/stiffness/basepair_stiffness.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":80,"n_excluded":0,"n_missing":17,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_957b841f7413f0a1___init___py":{"hash":"3c77fc9ef7f887ac2508d4109cf92472","index":{"url":"z_957b841f7413f0a1___init___py.html","file":"biobb_dna/test/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":0,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_020f76a90aa51c7b_test_bipopulations_py":{"hash":"175cafd72ba8ca1abd9832911a89994d","index":{"url":"z_020f76a90aa51c7b_test_bipopulations_py.html","file":"biobb_dna/test/unitests/test_backbone/test_bipopulations.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_020f76a90aa51c7b_test_canonical_alpha_gamma_py":{"hash":"5a81da922980c8d55d55458bdcdae838","index":{"url":"z_020f76a90aa51c7b_test_canonical_alpha_gamma_py.html","file":"biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_020f76a90aa51c7b_test_puckering_py":{"hash":"71439794e42333f246adb001595e1534","index":{"url":"z_020f76a90aa51c7b_test_puckering_py.html","file":"biobb_dna/test/unitests/test_backbone/test_puckering.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_97f47455ed834d2d_test_correlation_py":{"hash":"26d7a8700e705acf46efe19b2a8b6392","index":{"url":"z_97f47455ed834d2d_test_correlation_py.html","file":"biobb_dna/test/unitests/test_correlation/test_correlation.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":84,"n_excluded":0,"n_missing":6,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8030ef0ea5bfd6aa_test_canal_py":{"hash":"f8340d4b29a103e7bdd2e5b63a6c8622","index":{"url":"z_8030ef0ea5bfd6aa_test_canal_py.html","file":"biobb_dna/test/unitests/test_curvesplus/test_canal.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":14,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8030ef0ea5bfd6aa_test_canal_unzip_py":{"hash":"84aea00a1cd6911afc750884975c3ed8","index":{"url":"z_8030ef0ea5bfd6aa_test_canal_unzip_py.html","file":"biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":14,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8030ef0ea5bfd6aa_test_canion_py":{"hash":"18c50ee2aac01b9b8947740f2a555cf5","index":{"url":"z_8030ef0ea5bfd6aa_test_canion_py.html","file":"biobb_dna/test/unitests/test_curvesplus/test_canion.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":14,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8030ef0ea5bfd6aa_test_curves_py":{"hash":"8f3e1e4d26c60d37a0a5520add15a92d","index":{"url":"z_8030ef0ea5bfd6aa_test_curves_py.html","file":"biobb_dna/test/unitests/test_curvesplus/test_curves.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":18,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_100f5897bddc1993_test_averages_py":{"hash":"af649f4f4cbc8c95903e182507b99c55","index":{"url":"z_100f5897bddc1993_test_averages_py.html","file":"biobb_dna/test/unitests/test_dna/test_averages.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":19,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_100f5897bddc1993_test_bimodality_py":{"hash":"4136b2247e063ab1d624a339f1af96c5","index":{"url":"z_100f5897bddc1993_test_bimodality_py.html","file":"biobb_dna/test/unitests/test_dna/test_bimodality.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_100f5897bddc1993_test_timeseries_py":{"hash":"6e3aa2bec660085842f012819dbc8181","index":{"url":"z_100f5897bddc1993_test_timeseries_py.html","file":"biobb_dna/test/unitests/test_dna/test_timeseries.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":17,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_100f5897bddc1993_test_timeseries_unzip_py":{"hash":"1e87130508ec44dc9b529bfde70afb2f","index":{"url":"z_100f5897bddc1993_test_timeseries_unzip_py.html","file":"biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_cda7f8e8576a7189_test_stiffness_py":{"hash":"6ce203df279f75c18bd115505daf6dd3","index":{"url":"z_cda7f8e8576a7189_test_stiffness_py.html","file":"biobb_dna/test/unitests/test_stiffness/test_stiffness.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":30,"n_excluded":0,"n_missing":2,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_833b0317e3c43dca___init___py":{"hash":"3c77fc9ef7f887ac2508d4109cf92472","index":{"url":"z_833b0317e3c43dca___init___py.html","file":"biobb_dna/utils/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":0,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_833b0317e3c43dca_constants_py":{"hash":"47b36c441de47f720036c0194658fcab","index":{"url":"z_833b0317e3c43dca_constants_py.html","file":"biobb_dna/utils/constants.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":6,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_833b0317e3c43dca_loader_py":{"hash":"fa62361b510c98eb5cc5974076657f50","index":{"url":"z_833b0317e3c43dca_loader_py.html","file":"biobb_dna/utils/loader.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":26,"n_excluded":0,"n_missing":10,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_833b0317e3c43dca_transform_py":{"hash":"ea1eabb2e7f10be5f347689e53f10fc2","index":{"url":"z_833b0317e3c43dca_transform_py.html","file":"biobb_dna/utils/transform.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":6,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}}}}
\ No newline at end of file
+{"note":"This file is an internal implementation detail to speed up HTML report generation. Its format can change at any time. You might be looking for the JSON report: https://coverage.rtfd.io/cmd.html#cmd-json","format":5,"version":"7.5.4","globals":"577c8923df28730261885525dcd00011","files":{"z_76997f7c8cf1ed45___init___py":{"hash":"bf1bcad18095d5b4bca501b84d25cfe4","index":{"url":"z_76997f7c8cf1ed45___init___py.html","file":"biobb_dna/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":3,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_159731231e5c9c9d___init___py":{"hash":"580af44eed061416b7d2f888e96da488","index":{"url":"z_159731231e5c9c9d___init___py.html","file":"biobb_dna/backbone/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_159731231e5c9c9d_bipopulations_py":{"hash":"43d4d8cbfb31edaaa857999e76f9afa1","index":{"url":"z_159731231e5c9c9d_bipopulations_py.html","file":"biobb_dna/backbone/bipopulations.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":97,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_159731231e5c9c9d_canonicalag_py":{"hash":"34e303f5e2b84a55d6104870606491a5","index":{"url":"z_159731231e5c9c9d_canonicalag_py.html","file":"biobb_dna/backbone/canonicalag.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":107,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_159731231e5c9c9d_puckering_py":{"hash":"727535f289f313efed6a12b3408de66f","index":{"url":"z_159731231e5c9c9d_puckering_py.html","file":"biobb_dna/backbone/puckering.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":102,"n_excluded":0,"n_missing":20,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4___init___py":{"hash":"c454a927fa5a54be1f0d1aea2530c53a","index":{"url":"z_74fa14c6d0e940a4___init___py.html","file":"biobb_dna/curvesplus/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4_biobb_canal_py":{"hash":"9c10336bd5fb28e6f747af7107dbd073","index":{"url":"z_74fa14c6d0e940a4_biobb_canal_py.html","file":"biobb_dna/curvesplus/biobb_canal.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":83,"n_excluded":0,"n_missing":23,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4_biobb_canion_py":{"hash":"a02c9bf2c4d7d5ce4412dc0f12c55092","index":{"url":"z_74fa14c6d0e940a4_biobb_canion_py.html","file":"biobb_dna/curvesplus/biobb_canion.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":80,"n_excluded":0,"n_missing":16,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4_biobb_curves_py":{"hash":"0f4ed46f7d68203925ab6159b832622d","index":{"url":"z_74fa14c6d0e940a4_biobb_curves_py.html","file":"biobb_dna/curvesplus/biobb_curves.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":109,"n_excluded":0,"n_missing":29,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_74fa14c6d0e940a4_canal_unzip_py":{"hash":"df29e9c141abc59023550713f9a3db1b","index":{"url":"z_74fa14c6d0e940a4_canal_unzip_py.html","file":"biobb_dna/curvesplus/canal_unzip.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":81,"n_excluded":0,"n_missing":29,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91___init___py":{"hash":"fa2d62abe6038dd1ed704b4fd0cd96b5","index":{"url":"z_3afbcd666ed82c91___init___py.html","file":"biobb_dna/dna/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91_dna_averages_py":{"hash":"5cc2774f94a20d9f1a5f992f12c12418","index":{"url":"z_3afbcd666ed82c91_dna_averages_py.html","file":"biobb_dna/dna/dna_averages.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":92,"n_excluded":0,"n_missing":25,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91_dna_bimodality_py":{"hash":"8029a40dc092efed4c48c8f018c05671","index":{"url":"z_3afbcd666ed82c91_dna_bimodality_py.html","file":"biobb_dna/dna/dna_bimodality.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":151,"n_excluded":0,"n_missing":47,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91_dna_timeseries_py":{"hash":"991ecbf9599060401f37dc460c43160e","index":{"url":"z_3afbcd666ed82c91_dna_timeseries_py.html","file":"biobb_dna/dna/dna_timeseries.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":106,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_3afbcd666ed82c91_dna_timeseries_unzip_py":{"hash":"bd184360066bd3da0b1d41223434d8da","index":{"url":"z_3afbcd666ed82c91_dna_timeseries_unzip_py.html","file":"biobb_dna/dna/dna_timeseries_unzip.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":84,"n_excluded":0,"n_missing":27,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8a2a7f872cf1434f___init___py":{"hash":"67df46be23f0c6a378b927437bcdb3ae","index":{"url":"z_8a2a7f872cf1434f___init___py.html","file":"biobb_dna/interbp_correlations/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8a2a7f872cf1434f_interbpcorr_py":{"hash":"feaad0d8d617f983d3b229aae9e1b9e4","index":{"url":"z_8a2a7f872cf1434f_interbpcorr_py.html","file":"biobb_dna/interbp_correlations/interbpcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":141,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8a2a7f872cf1434f_interhpcorr_py":{"hash":"319017b2a2e282880c59501f85ca5919","index":{"url":"z_8a2a7f872cf1434f_interhpcorr_py.html","file":"biobb_dna/interbp_correlations/interhpcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":132,"n_excluded":0,"n_missing":25,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8a2a7f872cf1434f_interseqcorr_py":{"hash":"e5065941f35e1830a95eb4bc79d1be04","index":{"url":"z_8a2a7f872cf1434f_interseqcorr_py.html","file":"biobb_dna/interbp_correlations/interseqcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":93,"n_excluded":0,"n_missing":27,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_64e03be4370b7ecc___init___py":{"hash":"0a07897e7f3f28f9a10cdd42a064cb13","index":{"url":"z_64e03be4370b7ecc___init___py.html","file":"biobb_dna/intrabp_correlations/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_64e03be4370b7ecc_intrabpcorr_py":{"hash":"e3412d7e0ba722c77b25218dcc6ada68","index":{"url":"z_64e03be4370b7ecc_intrabpcorr_py.html","file":"biobb_dna/intrabp_correlations/intrabpcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":141,"n_excluded":0,"n_missing":22,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_64e03be4370b7ecc_intrahpcorr_py":{"hash":"33582947a0faa99826edaba942fe78a0","index":{"url":"z_64e03be4370b7ecc_intrahpcorr_py.html","file":"biobb_dna/intrabp_correlations/intrahpcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":132,"n_excluded":0,"n_missing":25,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_64e03be4370b7ecc_intraseqcorr_py":{"hash":"e72ddcc500502d87698fcd27ee851a1a","index":{"url":"z_64e03be4370b7ecc_intraseqcorr_py.html","file":"biobb_dna/intrabp_correlations/intraseqcorr.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":93,"n_excluded":0,"n_missing":27,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_9de9475b0a6fab52___init___py":{"hash":"beb785844bf570c4fb1aa991c0e4d17a","index":{"url":"z_9de9475b0a6fab52___init___py.html","file":"biobb_dna/stiffness/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":2,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_9de9475b0a6fab52_average_stiffness_py":{"hash":"b4afbac438d5beda96ab48b2984de086","index":{"url":"z_9de9475b0a6fab52_average_stiffness_py.html","file":"biobb_dna/stiffness/average_stiffness.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":89,"n_excluded":0,"n_missing":24,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_9de9475b0a6fab52_basepair_stiffness_py":{"hash":"2db4dc817de38d4960600d4c798b2530","index":{"url":"z_9de9475b0a6fab52_basepair_stiffness_py.html","file":"biobb_dna/stiffness/basepair_stiffness.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":80,"n_excluded":0,"n_missing":17,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_957b841f7413f0a1___init___py":{"hash":"3c77fc9ef7f887ac2508d4109cf92472","index":{"url":"z_957b841f7413f0a1___init___py.html","file":"biobb_dna/test/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":0,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_020f76a90aa51c7b_test_bipopulations_py":{"hash":"175cafd72ba8ca1abd9832911a89994d","index":{"url":"z_020f76a90aa51c7b_test_bipopulations_py.html","file":"biobb_dna/test/unitests/test_backbone/test_bipopulations.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_020f76a90aa51c7b_test_canonical_alpha_gamma_py":{"hash":"5a81da922980c8d55d55458bdcdae838","index":{"url":"z_020f76a90aa51c7b_test_canonical_alpha_gamma_py.html","file":"biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_020f76a90aa51c7b_test_puckering_py":{"hash":"71439794e42333f246adb001595e1534","index":{"url":"z_020f76a90aa51c7b_test_puckering_py.html","file":"biobb_dna/test/unitests/test_backbone/test_puckering.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_97f47455ed834d2d_test_correlation_py":{"hash":"26d7a8700e705acf46efe19b2a8b6392","index":{"url":"z_97f47455ed834d2d_test_correlation_py.html","file":"biobb_dna/test/unitests/test_correlation/test_correlation.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":84,"n_excluded":0,"n_missing":6,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8030ef0ea5bfd6aa_test_canal_py":{"hash":"f8340d4b29a103e7bdd2e5b63a6c8622","index":{"url":"z_8030ef0ea5bfd6aa_test_canal_py.html","file":"biobb_dna/test/unitests/test_curvesplus/test_canal.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":14,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8030ef0ea5bfd6aa_test_canal_unzip_py":{"hash":"7ba74f0a14dbf6d84f83eceb2b00331d","index":{"url":"z_8030ef0ea5bfd6aa_test_canal_unzip_py.html","file":"biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":14,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8030ef0ea5bfd6aa_test_canion_py":{"hash":"18c50ee2aac01b9b8947740f2a555cf5","index":{"url":"z_8030ef0ea5bfd6aa_test_canion_py.html","file":"biobb_dna/test/unitests/test_curvesplus/test_canion.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":14,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_8030ef0ea5bfd6aa_test_curves_py":{"hash":"8f3e1e4d26c60d37a0a5520add15a92d","index":{"url":"z_8030ef0ea5bfd6aa_test_curves_py.html","file":"biobb_dna/test/unitests/test_curvesplus/test_curves.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":18,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_100f5897bddc1993_test_averages_py":{"hash":"af649f4f4cbc8c95903e182507b99c55","index":{"url":"z_100f5897bddc1993_test_averages_py.html","file":"biobb_dna/test/unitests/test_dna/test_averages.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":19,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_100f5897bddc1993_test_bimodality_py":{"hash":"4136b2247e063ab1d624a339f1af96c5","index":{"url":"z_100f5897bddc1993_test_bimodality_py.html","file":"biobb_dna/test/unitests/test_dna/test_bimodality.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_100f5897bddc1993_test_timeseries_py":{"hash":"6e3aa2bec660085842f012819dbc8181","index":{"url":"z_100f5897bddc1993_test_timeseries_py.html","file":"biobb_dna/test/unitests/test_dna/test_timeseries.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":17,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_100f5897bddc1993_test_timeseries_unzip_py":{"hash":"168d74ce5d19f1e6f1c61d0eb74d201b","index":{"url":"z_100f5897bddc1993_test_timeseries_unzip_py.html","file":"biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":16,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_cda7f8e8576a7189_test_stiffness_py":{"hash":"6ce203df279f75c18bd115505daf6dd3","index":{"url":"z_cda7f8e8576a7189_test_stiffness_py.html","file":"biobb_dna/test/unitests/test_stiffness/test_stiffness.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":30,"n_excluded":0,"n_missing":2,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_833b0317e3c43dca___init___py":{"hash":"3c77fc9ef7f887ac2508d4109cf92472","index":{"url":"z_833b0317e3c43dca___init___py.html","file":"biobb_dna/utils/__init__.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":0,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_833b0317e3c43dca_constants_py":{"hash":"47b36c441de47f720036c0194658fcab","index":{"url":"z_833b0317e3c43dca_constants_py.html","file":"biobb_dna/utils/constants.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":6,"n_excluded":0,"n_missing":0,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_833b0317e3c43dca_loader_py":{"hash":"fa62361b510c98eb5cc5974076657f50","index":{"url":"z_833b0317e3c43dca_loader_py.html","file":"biobb_dna/utils/loader.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":26,"n_excluded":0,"n_missing":10,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}},"z_833b0317e3c43dca_transform_py":{"hash":"ea1eabb2e7f10be5f347689e53f10fc2","index":{"url":"z_833b0317e3c43dca_transform_py.html","file":"biobb_dna/utils/transform.py","description":"","nums":{"precision":0,"n_files":1,"n_statements":6,"n_excluded":0,"n_missing":1,"n_branches":0,"n_partial_branches":0,"n_missing_branches":0}}}}}
\ No newline at end of file
diff --git a/coverage/z_020f76a90aa51c7b_test_bipopulations_py.html b/coverage/z_020f76a90aa51c7b_test_bipopulations_py.html
index b7c02e47..c47a35ac 100644
--- a/coverage/z_020f76a90aa51c7b_test_bipopulations_py.html
+++ b/coverage/z_020f76a90aa51c7b_test_bipopulations_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_020f76a90aa51c7b_test_canonical_alpha_gamma_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -109,7 +109,7 @@ <h2>
             <a class="nav" href="z_020f76a90aa51c7b_test_canonical_alpha_gamma_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_020f76a90aa51c7b_test_canonical_alpha_gamma_py.html b/coverage/z_020f76a90aa51c7b_test_canonical_alpha_gamma_py.html
index 7696e381..8e8265f6 100644
--- a/coverage/z_020f76a90aa51c7b_test_canonical_alpha_gamma_py.html
+++ b/coverage/z_020f76a90aa51c7b_test_canonical_alpha_gamma_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_020f76a90aa51c7b_test_puckering_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -109,7 +109,7 @@ <h2>
             <a class="nav" href="z_020f76a90aa51c7b_test_puckering_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_020f76a90aa51c7b_test_puckering_py.html b/coverage/z_020f76a90aa51c7b_test_puckering_py.html
index c6fd4899..453eefcd 100644
--- a/coverage/z_020f76a90aa51c7b_test_puckering_py.html
+++ b/coverage/z_020f76a90aa51c7b_test_puckering_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_97f47455ed834d2d_test_correlation_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -109,7 +109,7 @@ <h2>
             <a class="nav" href="z_97f47455ed834d2d_test_correlation_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_100f5897bddc1993_test_averages_py.html b/coverage/z_100f5897bddc1993_test_averages_py.html
index b20e4e41..ee7736f2 100644
--- a/coverage/z_100f5897bddc1993_test_averages_py.html
+++ b/coverage/z_100f5897bddc1993_test_averages_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_100f5897bddc1993_test_bimodality_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -113,7 +113,7 @@ <h2>
             <a class="nav" href="z_100f5897bddc1993_test_bimodality_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_100f5897bddc1993_test_bimodality_py.html b/coverage/z_100f5897bddc1993_test_bimodality_py.html
index 5420f89d..8ad48841 100644
--- a/coverage/z_100f5897bddc1993_test_bimodality_py.html
+++ b/coverage/z_100f5897bddc1993_test_bimodality_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_100f5897bddc1993_test_timeseries_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -109,7 +109,7 @@ <h2>
             <a class="nav" href="z_100f5897bddc1993_test_timeseries_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_100f5897bddc1993_test_timeseries_py.html b/coverage/z_100f5897bddc1993_test_timeseries_py.html
index 5f81a596..9d633582 100644
--- a/coverage/z_100f5897bddc1993_test_timeseries_py.html
+++ b/coverage/z_100f5897bddc1993_test_timeseries_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_100f5897bddc1993_test_timeseries_unzip_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -111,7 +111,7 @@ <h2>
             <a class="nav" href="z_100f5897bddc1993_test_timeseries_unzip_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_100f5897bddc1993_test_timeseries_unzip_py.html b/coverage/z_100f5897bddc1993_test_timeseries_unzip_py.html
index 8c7f0f1c..40f8b94e 100644
--- a/coverage/z_100f5897bddc1993_test_timeseries_unzip_py.html
+++ b/coverage/z_100f5897bddc1993_test_timeseries_unzip_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_cda7f8e8576a7189_test_stiffness_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -114,7 +114,7 @@ <h2>
             <a class="nav" href="z_cda7f8e8576a7189_test_stiffness_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_159731231e5c9c9d___init___py.html b/coverage/z_159731231e5c9c9d___init___py.html
index 1b37f33f..d395fff9 100644
--- a/coverage/z_159731231e5c9c9d___init___py.html
+++ b/coverage/z_159731231e5c9c9d___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_159731231e5c9c9d_bipopulations_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -91,7 +91,7 @@ <h2>
             <a class="nav" href="z_159731231e5c9c9d_bipopulations_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_159731231e5c9c9d_bipopulations_py.html b/coverage/z_159731231e5c9c9d_bipopulations_py.html
index 221f7a18..9ae1bf30 100644
--- a/coverage/z_159731231e5c9c9d_bipopulations_py.html
+++ b/coverage/z_159731231e5c9c9d_bipopulations_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_159731231e5c9c9d_canonicalag_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -374,7 +374,7 @@ <h2>
             <a class="nav" href="z_159731231e5c9c9d_canonicalag_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_159731231e5c9c9d_canonicalag_py.html b/coverage/z_159731231e5c9c9d_canonicalag_py.html
index ab3e716e..99c54ed7 100644
--- a/coverage/z_159731231e5c9c9d_canonicalag_py.html
+++ b/coverage/z_159731231e5c9c9d_canonicalag_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_159731231e5c9c9d_puckering_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -382,7 +382,7 @@ <h2>
             <a class="nav" href="z_159731231e5c9c9d_puckering_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_159731231e5c9c9d_puckering_py.html b/coverage/z_159731231e5c9c9d_puckering_py.html
index 51d1a67c..4c957096 100644
--- a/coverage/z_159731231e5c9c9d_puckering_py.html
+++ b/coverage/z_159731231e5c9c9d_puckering_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_74fa14c6d0e940a4___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -368,7 +368,7 @@ <h2>
             <a class="nav" href="z_74fa14c6d0e940a4___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_3afbcd666ed82c91___init___py.html b/coverage/z_3afbcd666ed82c91___init___py.html
index 2225fb32..30e51fea 100644
--- a/coverage/z_3afbcd666ed82c91___init___py.html
+++ b/coverage/z_3afbcd666ed82c91___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_3afbcd666ed82c91_dna_averages_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -91,7 +91,7 @@ <h2>
             <a class="nav" href="z_3afbcd666ed82c91_dna_averages_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_3afbcd666ed82c91_dna_averages_py.html b/coverage/z_3afbcd666ed82c91_dna_averages_py.html
index 73089359..18c8f214 100644
--- a/coverage/z_3afbcd666ed82c91_dna_averages_py.html
+++ b/coverage/z_3afbcd666ed82c91_dna_averages_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_3afbcd666ed82c91_dna_bimodality_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -344,7 +344,7 @@ <h2>
             <a class="nav" href="z_3afbcd666ed82c91_dna_bimodality_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_3afbcd666ed82c91_dna_bimodality_py.html b/coverage/z_3afbcd666ed82c91_dna_bimodality_py.html
index 05f8383e..ea2ccdc8 100644
--- a/coverage/z_3afbcd666ed82c91_dna_bimodality_py.html
+++ b/coverage/z_3afbcd666ed82c91_dna_bimodality_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_3afbcd666ed82c91_dna_timeseries_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -426,7 +426,7 @@ <h2>
             <a class="nav" href="z_3afbcd666ed82c91_dna_timeseries_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_3afbcd666ed82c91_dna_timeseries_py.html b/coverage/z_3afbcd666ed82c91_dna_timeseries_py.html
index a1ffa879..af9623ab 100644
--- a/coverage/z_3afbcd666ed82c91_dna_timeseries_py.html
+++ b/coverage/z_3afbcd666ed82c91_dna_timeseries_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -358,7 +358,7 @@ <h2>
             <a class="nav" href="z_3afbcd666ed82c91_dna_timeseries_unzip_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_3afbcd666ed82c91_dna_timeseries_unzip_py.html b/coverage/z_3afbcd666ed82c91_dna_timeseries_unzip_py.html
index c7d63e0e..0d4faa16 100644
--- a/coverage/z_3afbcd666ed82c91_dna_timeseries_unzip_py.html
+++ b/coverage/z_3afbcd666ed82c91_dna_timeseries_unzip_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_8a2a7f872cf1434f___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -101,9 +101,9 @@ <h2>
     <p class="pln"><span class="n"><a id="t19" href="#t19">19</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t20" href="#t20">20</a></span><span class="t"><span class="str">    Args:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t21" href="#t21">21</a></span><span class="t"><span class="str">        input_zip_file (str): Zip file with dna_timeseries output files. File type: input. `Sample file &lt;https://raw.githubusercontent.com/bioexcel/biobb_dna/master/biobb_dna/test/data/dna/timeseries_output.zip>`_. Accepted formats: zip (edam:format_3987).</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t22" href="#t22">22</a></span><span class="t"><span class="str">        output_path_csv (str): dna_timeseries output csv file contained within input_zip_file. File type: output. `Sample file &lt;https://raw.githubusercontent.com/bioexcel/biobb_dna/master/biobb_dna/test/reference/dna/dna_timeseries_unzip_output.csv>`_. Accepted formats: csv (edam:format_3752).</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t23" href="#t23">23</a></span><span class="t"><span class="str">        output_path_jpg (str): dna_timeseries output jpg file contained within input_zip_file. File type: output. `Sample file &lt;https://raw.githubusercontent.com/bioexcel/biobb_dna/master/biobb_dna/test/reference/dna/dna_timeseries_unzip_output.jpg>`_. Accepted formats: jpg (edam:format_3579).</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t24" href="#t24">24</a></span><span class="t"><span class="str">        output_list_path (str) (Optional): Text file with a list of all dna_timeseries output files contained within input_zip_file. File type: output. `Sample file &lt;https://raw.githubusercontent.com/bioexcel/biobb_dna/master/biobb_dna/test/reference/dna/dna_timeseries_unzip_output.txt>`_. Accepted formats: txt (edam:format_2330).</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t22" href="#t22">22</a></span><span class="t"><span class="str">        output_path_csv (str): dna_timeseries output csv file contained within input_zip_file. File type: output. `Sample file &lt;https://raw.githubusercontent.com/bioexcel/biobb_dna/master/biobb_dna/test/reference/dna/dna_timeseries_unzip.csv>`_. Accepted formats: csv (edam:format_3752).</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t23" href="#t23">23</a></span><span class="t"><span class="str">        output_path_jpg (str): dna_timeseries output jpg file contained within input_zip_file. File type: output. `Sample file &lt;https://raw.githubusercontent.com/bioexcel/biobb_dna/master/biobb_dna/test/reference/dna/dna_timeseries_unzip.jpg>`_. Accepted formats: jpg (edam:format_3579).</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t24" href="#t24">24</a></span><span class="t"><span class="str">        output_list_path (str) (Optional): Text file with a list of all dna_timeseries output files contained within input_zip_file. File type: output. `Sample file &lt;https://raw.githubusercontent.com/bioexcel/biobb_dna/master/biobb_dna/test/reference/dna/dna_timeseries_unzip.txt>`_. Accepted formats: txt (edam:format_2330).</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t25" href="#t25">25</a></span><span class="t"><span class="str">        properties (dic):</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t26" href="#t26">26</a></span><span class="t"><span class="str">            * **type** (*str*) - (None) Type of analysis, series or histogram. Values: series, hist.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t27" href="#t27">27</a></span><span class="t"><span class="str">            * **parameter** (*str*) - (None) Type of parameter. Values: majd, majw, mind, minw, inclin, tip, xdisp, ydisp, shear, stretch, stagger, buckle, propel, opening, rise, roll, twist, shift, slide, tilt, alphaC, alphaW, betaC, betaW, gammaC, gammaW, deltaC, deltaW, epsilC, epsilW, zetaC, zetaW, chiC, chiW, phaseC, phaseW.</span>&nbsp;</span><span class="r"></span></p>
@@ -111,207 +111,208 @@ <h2>
     <p class="pln"><span class="n"><a id="t29" href="#t29">29</a></span><span class="t"><span class="str">            * **index** (*int*) - (0) Base pair index in the parameter 'sequence', starting from 0.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t30" href="#t30">30</a></span><span class="t"><span class="str">            * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t31" href="#t31">31</a></span><span class="t"><span class="str">            * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t32" href="#t32">32</a></span><span class="t"><span class="str">    Examples:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t"><span class="str">        This is a use example of how to use the building block from Python::</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t"><span class="str">            from biobb_dna.dna.dna_timeseries_unzip import dna_timeseries_unzip</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t"><span class="str">            prop = {</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t"><span class="str">                'type': 'hist',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t"><span class="str">                'parameter': 'shift',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t"><span class="str">                'sequence': 'CGCGAATTCGCG',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t"><span class="str">                'index': 5</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t"><span class="str">            }</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t"><span class="str">            dna_timeseries_unzip(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t"><span class="str">                input_zip_file='/path/to/dna_timeseries/output.zip',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t"><span class="str">                output_path='/path/to/output.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t"><span class="str">                output_list_path='/path/to/output.txt'</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t"><span class="str">                properties=prop)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t"><span class="str">    Info:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t"><span class="str">        * wrapped_software:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t"><span class="str">            * name: In house</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t"><span class="str">            * license: Apache-2.0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t"><span class="str">        * ontology:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t"><span class="str">            * name: EDAM</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t"><span class="str">            * schema: http://edamontology.org/EDAM.owl</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t">                 <span class="nam">output_path_csv</span><span class="op">,</span> <span class="nam">output_path_jpg</span><span class="op">,</span> <span class="nam">output_list_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">properties</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t">        <span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span> <span class="key">or</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t">        <span class="com"># Call parent class constructor</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">locals_var_dict</span> <span class="op">=</span> <span class="nam">locals</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">        <span class="com"># Input/Output files</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">io_dict</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">            <span class="str">'in'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">                <span class="str">'input_zip_file'</span><span class="op">:</span> <span class="nam">input_zip_file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">            <span class="op">}</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="str">'out'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">                <span class="str">'output_path_csv'</span><span class="op">:</span> <span class="nam">output_path_csv</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">                <span class="str">'output_path_jpg'</span><span class="op">:</span> <span class="nam">output_path_jpg</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">                <span class="str">'output_list_path'</span><span class="op">:</span> <span class="nam">output_list_path</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">            <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">        <span class="com"># Properties specific for BB</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'type'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">parameter</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'parameter'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'sequence'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">index</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'index'</span><span class="op">,</span> <span class="num">0</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">        <span class="com"># Check the properties</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_properties</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">    <span class="op">@</span><span class="nam">launchlogger</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">    <span class="key">def</span> <span class="nam">launch</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">        <span class="str">"""Execute the :class:`DnaTimeseriesUnzip &lt;biobb_dna.dna.dna_timeseries_unzip.DnaTimeseriesUnzip>` object."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">        <span class="com"># Setup Biobb</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">check_restart</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">            <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">stage_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">        <span class="com"># Check that both properties are set</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">is</span> <span class="key">None</span> <span class="key">or</span> <span class="nam">self</span><span class="op">.</span><span class="nam">parameter</span> <span class="key">is</span> <span class="key">None</span> <span class="key">or</span> <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">"Properties 'type', 'parameter' and 'sequence' are mandatory to run DnaTimeseriesUnzip. Please set them."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">        <span class="com"># Check that the type is valid</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">not</span> <span class="key">in</span> <span class="op">[</span><span class="str">"series"</span><span class="op">,</span> <span class="str">"hist"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Type {self.type} not valid. Valid types are: series, hist."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">        <span class="com"># Check that the parameter is valid</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">parameter</span> <span class="key">not</span> <span class="key">in</span> <span class="op">[</span><span class="str">"majd"</span><span class="op">,</span> <span class="str">"majw"</span><span class="op">,</span> <span class="str">"mind"</span><span class="op">,</span> <span class="str">"minw"</span><span class="op">,</span> <span class="str">"inclin"</span><span class="op">,</span> <span class="str">"tip"</span><span class="op">,</span> <span class="str">"xdisp"</span><span class="op">,</span> <span class="str">"ydisp"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">                                  <span class="str">"stagger"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">                                  <span class="str">"tilt"</span><span class="op">,</span> <span class="str">"alphaC"</span><span class="op">,</span> <span class="str">"alphaW"</span><span class="op">,</span> <span class="str">"betaC"</span><span class="op">,</span> <span class="str">"betaW"</span><span class="op">,</span> <span class="str">"gammaC"</span><span class="op">,</span> <span class="str">"gammaW"</span><span class="op">,</span> <span class="str">"deltaC"</span><span class="op">,</span> <span class="str">"deltaW"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">                                  <span class="str">"epsilC"</span><span class="op">,</span> <span class="str">"epsilW"</span><span class="op">,</span> <span class="str">"zetaC"</span><span class="op">,</span> <span class="str">"zetaW"</span><span class="op">,</span> <span class="str">"chiC"</span><span class="op">,</span> <span class="str">"chiW"</span><span class="op">,</span> <span class="str">"phaseC"</span><span class="op">,</span> <span class="str">"phaseW"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Parameter {self.parameter} not valid. Valid parameters are: majd, majw, mind, minw, inclin, tip, xdisp, ydisp, shear, stretch, stagger, buckle, propel, opening, rise, roll, twist, shift, slide, tilt, alphaC, alphaW, betaC, betaW, gammaC, gammaW, deltaC, deltaW, epsilC, epsilW, zetaC, zetaW, chiC, chiW, phaseC, phaseW."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">        <span class="com"># Check that the sequence is valid</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">        <span class="nam">pattern</span> <span class="op">=</span> <span class="str">r'^[ACGT]+$'</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">        <span class="key">if</span> <span class="key">not</span> <span class="nam">re</span><span class="op">.</span><span class="nam">match</span><span class="op">(</span><span class="nam">pattern</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Sequence {self.sequence} not valid. Only 'A', 'C', 'G' or 'T' bases allowed."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">        <span class="com"># Check that the index is valid</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">index</span> <span class="op">&lt;</span> <span class="num">0</span> <span class="key">or</span> <span class="nam">self</span><span class="op">.</span><span class="nam">index</span> <span class="op">>=</span> <span class="nam">len</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span><span class="op">)</span> <span class="op">-</span> <span class="num">1</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Index {self.index} not valid. It should be between 0 and {len(self.sequence) - 2}."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">        <span class="com"># Get index sequence base and next base</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="nam">bp</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span><span class="op">[</span><span class="nam">self</span><span class="op">.</span><span class="nam">index</span><span class="op">]</span> <span class="op">+</span> <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span><span class="op">[</span><span class="nam">self</span><span class="op">.</span><span class="nam">index</span> <span class="op">+</span> <span class="num">1</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">        <span class="com"># Get the filename</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">        <span class="nam">filename</span> <span class="op">=</span> <span class="str">f"{self.type}_{self.parameter}_{self.index + 1}_{bp}"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">        <span class="nam">csv_file</span> <span class="op">=</span> <span class="str">f"{filename}.csv"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">        <span class="nam">jpg_file</span> <span class="op">=</span> <span class="str">f"{filename}.jpg"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">        <span class="com"># Unzip the file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="key">with</span> <span class="nam">zipfile</span><span class="op">.</span><span class="nam">ZipFile</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_zip_file"</span><span class="op">]</span><span class="op">,</span> <span class="str">'r'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">zip_ref</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">            <span class="com"># Check if the csv file exists in the zip file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">            <span class="key">if</span> <span class="nam">csv_file</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">                <span class="com"># Extract the file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f'{csv_file} exists, copying into {self.stage_io_dict["out"]["output_path_csv"]}.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">                <span class="key">with</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">open</span><span class="op">(</span><span class="nam">csv_file</span><span class="op">)</span> <span class="key">as</span> <span class="nam">source</span><span class="op">,</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_path_csv"</span><span class="op">]</span><span class="op">,</span> <span class="str">"wb"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">target</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">                    <span class="nam">shutil</span><span class="op">.</span><span class="nam">copyfileobj</span><span class="op">(</span><span class="nam">source</span><span class="op">,</span> <span class="nam">target</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"File {csv_file} not found in the zip file."</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">            <span class="com"># Check if the jpg file exists in the zip file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">            <span class="key">if</span> <span class="nam">jpg_file</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">                <span class="com"># Extract the file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f'{jpg_file} exists, copying into {self.stage_io_dict["out"]["output_path_jpg"]}.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">                <span class="key">with</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">open</span><span class="op">(</span><span class="nam">jpg_file</span><span class="op">)</span> <span class="key">as</span> <span class="nam">source</span><span class="op">,</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_path_jpg"</span><span class="op">]</span><span class="op">,</span> <span class="str">"wb"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">target</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">                    <span class="nam">shutil</span><span class="op">.</span><span class="nam">copyfileobj</span><span class="op">(</span><span class="nam">source</span><span class="op">,</span> <span class="nam">target</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"File {jpg_file} not found in the zip file."</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">            <span class="com"># Write the list of files</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">            <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_list_path"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">                <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_list_path"</span><span class="op">]</span><span class="op">,</span> <span class="str">"w"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">                    <span class="key">for</span> <span class="nam">name</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">                        <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="str">f"{name}\n"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">        <span class="com"># Run Biobb block</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">        <span class="com"># self.run_biobb()</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">        <span class="com"># Copy files to host</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">copy_to_host</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">        <span class="com"># Remove temporary file(s)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">tmp_files</span><span class="op">.</span><span class="nam">extend</span><span class="op">(</span><span class="op">[</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"unique_dir"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">        <span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">remove_tmp_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="nam">output_files_created</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">raise_exception</span><span class="op">=</span><span class="key">False</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">return_code</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t32" href="#t32">32</a></span><span class="t"><span class="str">            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t"><span class="str">    Examples:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t"><span class="str">        This is a use example of how to use the building block from Python::</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t"><span class="str">            from biobb_dna.dna.dna_timeseries_unzip import dna_timeseries_unzip</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t"><span class="str">            prop = {</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t"><span class="str">                'type': 'hist',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t"><span class="str">                'parameter': 'shift',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t"><span class="str">                'sequence': 'CGCGAATTCGCG',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t"><span class="str">                'index': 5</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t"><span class="str">            }</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t"><span class="str">            dna_timeseries_unzip(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t"><span class="str">                input_zip_file='/path/to/dna_timeseries/output.zip',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t"><span class="str">                output_path='/path/to/output.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t"><span class="str">                output_list_path='/path/to/output.txt'</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t"><span class="str">                properties=prop)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t"><span class="str">    Info:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t"><span class="str">        * wrapped_software:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t"><span class="str">            * name: In house</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t"><span class="str">            * license: Apache-2.0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t"><span class="str">        * ontology:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t"><span class="str">            * name: EDAM</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t"><span class="str">            * schema: http://edamontology.org/EDAM.owl</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t">                 <span class="nam">output_path_csv</span><span class="op">,</span> <span class="nam">output_path_jpg</span><span class="op">,</span> <span class="nam">output_list_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">properties</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t">        <span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span> <span class="key">or</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t">        <span class="com"># Call parent class constructor</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">locals_var_dict</span> <span class="op">=</span> <span class="nam">locals</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">        <span class="com"># Input/Output files</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">io_dict</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">            <span class="str">'in'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">                <span class="str">'input_zip_file'</span><span class="op">:</span> <span class="nam">input_zip_file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="op">}</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">            <span class="str">'out'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">                <span class="str">'output_path_csv'</span><span class="op">:</span> <span class="nam">output_path_csv</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">                <span class="str">'output_path_jpg'</span><span class="op">:</span> <span class="nam">output_path_jpg</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">                <span class="str">'output_list_path'</span><span class="op">:</span> <span class="nam">output_list_path</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">            <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">        <span class="com"># Properties specific for BB</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'type'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">parameter</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'parameter'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'sequence'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">index</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'index'</span><span class="op">,</span> <span class="num">0</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">        <span class="com"># Check the properties</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_properties</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">    <span class="op">@</span><span class="nam">launchlogger</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">    <span class="key">def</span> <span class="nam">launch</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">        <span class="str">"""Execute the :class:`DnaTimeseriesUnzip &lt;biobb_dna.dna.dna_timeseries_unzip.DnaTimeseriesUnzip>` object."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">        <span class="com"># Setup Biobb</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">check_restart</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">            <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">stage_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="com"># Check that both properties are set</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">is</span> <span class="key">None</span> <span class="key">or</span> <span class="nam">self</span><span class="op">.</span><span class="nam">parameter</span> <span class="key">is</span> <span class="key">None</span> <span class="key">or</span> <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">"Properties 'type', 'parameter' and 'sequence' are mandatory to run DnaTimeseriesUnzip. Please set them."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">        <span class="com"># Check that the type is valid</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">not</span> <span class="key">in</span> <span class="op">[</span><span class="str">"series"</span><span class="op">,</span> <span class="str">"hist"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Type {self.type} not valid. Valid types are: series, hist."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">        <span class="com"># Check that the parameter is valid</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">parameter</span> <span class="key">not</span> <span class="key">in</span> <span class="op">[</span><span class="str">"majd"</span><span class="op">,</span> <span class="str">"majw"</span><span class="op">,</span> <span class="str">"mind"</span><span class="op">,</span> <span class="str">"minw"</span><span class="op">,</span> <span class="str">"inclin"</span><span class="op">,</span> <span class="str">"tip"</span><span class="op">,</span> <span class="str">"xdisp"</span><span class="op">,</span> <span class="str">"ydisp"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">                                  <span class="str">"stagger"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">                                  <span class="str">"tilt"</span><span class="op">,</span> <span class="str">"alphaC"</span><span class="op">,</span> <span class="str">"alphaW"</span><span class="op">,</span> <span class="str">"betaC"</span><span class="op">,</span> <span class="str">"betaW"</span><span class="op">,</span> <span class="str">"gammaC"</span><span class="op">,</span> <span class="str">"gammaW"</span><span class="op">,</span> <span class="str">"deltaC"</span><span class="op">,</span> <span class="str">"deltaW"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">                                  <span class="str">"epsilC"</span><span class="op">,</span> <span class="str">"epsilW"</span><span class="op">,</span> <span class="str">"zetaC"</span><span class="op">,</span> <span class="str">"zetaW"</span><span class="op">,</span> <span class="str">"chiC"</span><span class="op">,</span> <span class="str">"chiW"</span><span class="op">,</span> <span class="str">"phaseC"</span><span class="op">,</span> <span class="str">"phaseW"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Parameter {self.parameter} not valid. Valid parameters are: majd, majw, mind, minw, inclin, tip, xdisp, ydisp, shear, stretch, stagger, buckle, propel, opening, rise, roll, twist, shift, slide, tilt, alphaC, alphaW, betaC, betaW, gammaC, gammaW, deltaC, deltaW, epsilC, epsilW, zetaC, zetaW, chiC, chiW, phaseC, phaseW."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">        <span class="com"># Check that the sequence is valid</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">        <span class="nam">pattern</span> <span class="op">=</span> <span class="str">r'^[ACGT]+$'</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">        <span class="key">if</span> <span class="key">not</span> <span class="nam">re</span><span class="op">.</span><span class="nam">match</span><span class="op">(</span><span class="nam">pattern</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Sequence {self.sequence} not valid. Only 'A', 'C', 'G' or 'T' bases allowed."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">        <span class="com"># Check that the index is valid</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">index</span> <span class="op">&lt;</span> <span class="num">0</span> <span class="key">or</span> <span class="nam">self</span><span class="op">.</span><span class="nam">index</span> <span class="op">>=</span> <span class="nam">len</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span><span class="op">)</span> <span class="op">-</span> <span class="num">1</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Index {self.index} not valid. It should be between 0 and {len(self.sequence) - 2}."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="com"># Get index sequence base and next base</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">        <span class="nam">bp</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span><span class="op">[</span><span class="nam">self</span><span class="op">.</span><span class="nam">index</span><span class="op">]</span> <span class="op">+</span> <span class="nam">self</span><span class="op">.</span><span class="nam">sequence</span><span class="op">[</span><span class="nam">self</span><span class="op">.</span><span class="nam">index</span> <span class="op">+</span> <span class="num">1</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">        <span class="com"># Get the filename</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">        <span class="nam">filename</span> <span class="op">=</span> <span class="str">f"{self.type}_{self.parameter}_{self.index + 1}_{bp}"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">        <span class="nam">csv_file</span> <span class="op">=</span> <span class="str">f"{filename}.csv"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">        <span class="nam">jpg_file</span> <span class="op">=</span> <span class="str">f"{filename}.jpg"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="com"># Unzip the file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">        <span class="key">with</span> <span class="nam">zipfile</span><span class="op">.</span><span class="nam">ZipFile</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_zip_file"</span><span class="op">]</span><span class="op">,</span> <span class="str">'r'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">zip_ref</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">            <span class="com"># Check if the csv file exists in the zip file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">            <span class="key">if</span> <span class="nam">csv_file</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">                <span class="com"># Extract the file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f'{csv_file} exists, copying into {self.stage_io_dict["out"]["output_path_csv"]}.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">                <span class="key">with</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">open</span><span class="op">(</span><span class="nam">csv_file</span><span class="op">)</span> <span class="key">as</span> <span class="nam">source</span><span class="op">,</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_path_csv"</span><span class="op">]</span><span class="op">,</span> <span class="str">"wb"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">target</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">                    <span class="nam">shutil</span><span class="op">.</span><span class="nam">copyfileobj</span><span class="op">(</span><span class="nam">source</span><span class="op">,</span> <span class="nam">target</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"File {csv_file} not found in the zip file."</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">            <span class="com"># Check if the jpg file exists in the zip file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">            <span class="key">if</span> <span class="nam">jpg_file</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">                <span class="com"># Extract the file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f'{jpg_file} exists, copying into {self.stage_io_dict["out"]["output_path_jpg"]}.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">                <span class="key">with</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">open</span><span class="op">(</span><span class="nam">jpg_file</span><span class="op">)</span> <span class="key">as</span> <span class="nam">source</span><span class="op">,</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_path_jpg"</span><span class="op">]</span><span class="op">,</span> <span class="str">"wb"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">target</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">                    <span class="nam">shutil</span><span class="op">.</span><span class="nam">copyfileobj</span><span class="op">(</span><span class="nam">source</span><span class="op">,</span> <span class="nam">target</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"File {jpg_file} not found in the zip file."</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">            <span class="com"># Write the list of files</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">            <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_list_path"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">                <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_list_path"</span><span class="op">]</span><span class="op">,</span> <span class="str">"w"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">                    <span class="key">for</span> <span class="nam">name</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">                        <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="str">f"{name}\n"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">        <span class="com"># Run Biobb block</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">        <span class="com"># self.run_biobb()</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="com"># Copy files to host</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">copy_to_host</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="com"># Remove temporary file(s)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">tmp_files</span><span class="op">.</span><span class="nam">extend</span><span class="op">(</span><span class="op">[</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"unique_dir"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">        <span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">remove_tmp_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="nam">output_files_created</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">raise_exception</span><span class="op">=</span><span class="key">False</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">return_code</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t"><span class="key">def</span> <span class="nam">dna_timeseries_unzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="nam">output_path_csv</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">        <span class="nam">output_path_jpg</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">:</span> <span class="nam">str</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">        <span class="nam">properties</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">        <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">    <span class="str">"""Create :class:`DnaTimeseriesUnzip &lt;biobb_dna.dna.dna_timeseries_unzip.DnaTimeseriesUnzip>` class and</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t"><span class="str">    execute the :meth:`launch() &lt;biobb_dna.dna.dna_timeseries_unzip.DnaTimeseriesUnzip.launch>` method."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">    <span class="key">return</span> <span class="nam">DnaTimeseriesUnzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">=</span><span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">        <span class="nam">output_path_csv</span><span class="op">=</span><span class="nam">output_path_csv</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">        <span class="nam">output_path_jpg</span><span class="op">=</span><span class="nam">output_path_jpg</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">=</span><span class="nam">output_list_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span><span class="op">.</span><span class="nam">launch</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t"><span class="key">def</span> <span class="nam">dna_timeseries_unzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">        <span class="nam">output_path_csv</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">        <span class="nam">output_path_jpg</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">:</span> <span class="nam">str</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">        <span class="nam">properties</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">        <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">    <span class="str">"""Create :class:`DnaTimeseriesUnzip &lt;biobb_dna.dna.dna_timeseries_unzip.DnaTimeseriesUnzip>` class and</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t"><span class="str">    execute the :meth:`launch() &lt;biobb_dna.dna.dna_timeseries_unzip.DnaTimeseriesUnzip.launch>` method."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">    <span class="key">return</span> <span class="nam">DnaTimeseriesUnzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">=</span><span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">        <span class="nam">output_path_csv</span><span class="op">=</span><span class="nam">output_path_csv</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">        <span class="nam">output_path_jpg</span><span class="op">=</span><span class="nam">output_path_jpg</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">=</span><span class="nam">output_list_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span><span class="op">.</span><span class="nam">launch</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t202" href="#t202">202</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t"><span class="key">def</span> <span class="nam">main</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t">    <span class="str">"""Command line execution of this building block. Please check the command line documentation."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t205" href="#t205">205</a></span><span class="t">    <span class="nam">parser</span> <span class="op">=</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">ArgumentParser</span><span class="op">(</span><span class="nam">description</span><span class="op">=</span><span class="str">'Tool for extracting dna_timeseries output files.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t206" href="#t206">206</a></span><span class="t">                                     <span class="nam">formatter_class</span><span class="op">=</span><span class="key">lambda</span> <span class="nam">prog</span><span class="op">:</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">RawTextHelpFormatter</span><span class="op">(</span><span class="nam">prog</span><span class="op">,</span> <span class="nam">width</span><span class="op">=</span><span class="num">99999</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t207" href="#t207">207</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--config'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">help</span><span class="op">=</span><span class="str">'Configuration file'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t208" href="#t208">208</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t209" href="#t209">209</a></span><span class="t">    <span class="nam">required_args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument_group</span><span class="op">(</span><span class="str">'required arguments'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t210" href="#t210">210</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_zip_file'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t211" href="#t211">211</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Zip file with dna_timeseries output files. Accepted formats: zip.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t212" href="#t212">212</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_path_csv'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t213" href="#t213">213</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'dna_timeseries output csv file contained within input_zip_file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t214" href="#t214">214</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_path_jpg'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t215" href="#t215">215</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'dna_timeseries output jpg file contained within input_zip_file. Accepted formats: jpg.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t216" href="#t216">216</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_list_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t217" href="#t217">217</a></span><span class="t">                        <span class="nam">help</span><span class="op">=</span><span class="str">'Text file with a list of all dna_timeseries output files contained within input_zip_file. Accepted formats: txt.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t218" href="#t218">218</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t219" href="#t219">219</a></span><span class="t">    <span class="nam">args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">parse_args</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t220" href="#t220">220</a></span><span class="t">    <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="op">=</span> <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="key">or</span> <span class="str">"{}"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t221" href="#t221">221</a></span><span class="t">    <span class="nam">properties</span> <span class="op">=</span> <span class="nam">settings</span><span class="op">.</span><span class="nam">ConfReader</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">config</span><span class="op">)</span><span class="op">.</span><span class="nam">get_prop_dic</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t222" href="#t222">222</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t223" href="#t223">223</a></span><span class="t">    <span class="nam">dna_timeseries_unzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t224" href="#t224">224</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t225" href="#t225">225</a></span><span class="t">        <span class="nam">output_path_csv</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_path_csv</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t226" href="#t226">226</a></span><span class="t">        <span class="nam">output_path_jpg</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_path_jpg</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t227" href="#t227">227</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_list_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t228" href="#t228">228</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t229" href="#t229">229</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t"><span class="key">def</span> <span class="nam">main</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t205" href="#t205">205</a></span><span class="t">    <span class="str">"""Command line execution of this building block. Please check the command line documentation."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t206" href="#t206">206</a></span><span class="t">    <span class="nam">parser</span> <span class="op">=</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">ArgumentParser</span><span class="op">(</span><span class="nam">description</span><span class="op">=</span><span class="str">'Tool for extracting dna_timeseries output files.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t207" href="#t207">207</a></span><span class="t">                                     <span class="nam">formatter_class</span><span class="op">=</span><span class="key">lambda</span> <span class="nam">prog</span><span class="op">:</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">RawTextHelpFormatter</span><span class="op">(</span><span class="nam">prog</span><span class="op">,</span> <span class="nam">width</span><span class="op">=</span><span class="num">99999</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t208" href="#t208">208</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--config'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">help</span><span class="op">=</span><span class="str">'Configuration file'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t209" href="#t209">209</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t210" href="#t210">210</a></span><span class="t">    <span class="nam">required_args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument_group</span><span class="op">(</span><span class="str">'required arguments'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t211" href="#t211">211</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_zip_file'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t212" href="#t212">212</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Zip file with dna_timeseries output files. Accepted formats: zip.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t213" href="#t213">213</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_path_csv'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t214" href="#t214">214</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'dna_timeseries output csv file contained within input_zip_file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t215" href="#t215">215</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_path_jpg'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t216" href="#t216">216</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'dna_timeseries output jpg file contained within input_zip_file. Accepted formats: jpg.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t217" href="#t217">217</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_list_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t218" href="#t218">218</a></span><span class="t">                        <span class="nam">help</span><span class="op">=</span><span class="str">'Text file with a list of all dna_timeseries output files contained within input_zip_file. Accepted formats: txt.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t219" href="#t219">219</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t220" href="#t220">220</a></span><span class="t">    <span class="nam">args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">parse_args</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t221" href="#t221">221</a></span><span class="t">    <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="op">=</span> <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="key">or</span> <span class="str">"{}"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t222" href="#t222">222</a></span><span class="t">    <span class="nam">properties</span> <span class="op">=</span> <span class="nam">settings</span><span class="op">.</span><span class="nam">ConfReader</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">config</span><span class="op">)</span><span class="op">.</span><span class="nam">get_prop_dic</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t223" href="#t223">223</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t224" href="#t224">224</a></span><span class="t">    <span class="nam">dna_timeseries_unzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t225" href="#t225">225</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t226" href="#t226">226</a></span><span class="t">        <span class="nam">output_path_csv</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_path_csv</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t227" href="#t227">227</a></span><span class="t">        <span class="nam">output_path_jpg</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_path_jpg</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t228" href="#t228">228</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_list_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t229" href="#t229">229</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t230" href="#t230">230</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t231" href="#t231">231</a></span><span class="t"><span class="key">if</span> <span class="nam">__name__</span> <span class="op">==</span> <span class="str">'__main__'</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t232" href="#t232">232</a></span><span class="t">    <span class="nam">main</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t231" href="#t231">231</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t232" href="#t232">232</a></span><span class="t"><span class="key">if</span> <span class="nam">__name__</span> <span class="op">==</span> <span class="str">'__main__'</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t233" href="#t233">233</a></span><span class="t">    <span class="nam">main</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
 </main>
 <footer>
     <div class="content">
@@ -321,7 +322,7 @@ <h2>
             <a class="nav" href="z_8a2a7f872cf1434f___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_64e03be4370b7ecc___init___py.html b/coverage/z_64e03be4370b7ecc___init___py.html
index 6a23c258..81526798 100644
--- a/coverage/z_64e03be4370b7ecc___init___py.html
+++ b/coverage/z_64e03be4370b7ecc___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_64e03be4370b7ecc_intrabpcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -94,7 +94,7 @@ <h2>
             <a class="nav" href="z_64e03be4370b7ecc_intrabpcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_64e03be4370b7ecc_intrabpcorr_py.html b/coverage/z_64e03be4370b7ecc_intrabpcorr_py.html
index 7efa156b..f9012ba9 100644
--- a/coverage/z_64e03be4370b7ecc_intrabpcorr_py.html
+++ b/coverage/z_64e03be4370b7ecc_intrabpcorr_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_64e03be4370b7ecc_intrahpcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -419,7 +419,7 @@ <h2>
             <a class="nav" href="z_64e03be4370b7ecc_intrahpcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_64e03be4370b7ecc_intrahpcorr_py.html b/coverage/z_64e03be4370b7ecc_intrahpcorr_py.html
index d646804d..33e746c0 100644
--- a/coverage/z_64e03be4370b7ecc_intrahpcorr_py.html
+++ b/coverage/z_64e03be4370b7ecc_intrahpcorr_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_64e03be4370b7ecc_intraseqcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -115,314 +115,313 @@ <h2>
     <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t"><span class="str">            * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t"><span class="str">            * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t"><span class="str">            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t"><span class="str">            * **base** (*str*) - (None) Name of base analyzed.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t"><span class="str">    Examples:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t"><span class="str">        This is a use example of how to use the building block from Python::</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t"><span class="str">            from biobb_dna.intrabp_correlations.intrahpcorr import intrahpcorr</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t"><span class="str">            prop = {</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t"><span class="str">                'base': 'A',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t"><span class="str">            }</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t"><span class="str">            intrahpcorr(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t"><span class="str">                input_filename_shear='path/to/shear.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t"><span class="str">                input_filename_stretch='path/to/stretch.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t"><span class="str">                input_filename_stagger='path/to/stagger.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t"><span class="str">                input_filename_buckle='path/to/buckle.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t"><span class="str">                input_filename_propel='path/to/propel.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t"><span class="str">                input_filename_opening='path/to/opening.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t"><span class="str">                output_csv_path='path/to/output/file.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t"><span class="str">                output_jpg_path='path/to/output/file.jpg',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t"><span class="str">                properties=prop)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t"><span class="str">    Info:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t"><span class="str">        * wrapped_software:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t"><span class="str">            * name: In house</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t"><span class="str">            * license: Apache-2.0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t"><span class="str">        * ontology:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t"><span class="str">            * name: EDAM</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t"><span class="str">            * schema: http://edamontology.org/EDAM.owl</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">            <span class="nam">self</span><span class="op">,</span> <span class="nam">input_filename_shear</span><span class="op">,</span> <span class="nam">input_filename_stretch</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">            <span class="nam">input_filename_stagger</span><span class="op">,</span> <span class="nam">input_filename_buckle</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="nam">input_filename_propel</span><span class="op">,</span> <span class="nam">input_filename_opening</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">            <span class="nam">output_csv_path</span><span class="op">,</span> <span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">            <span class="nam">properties</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">        <span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span> <span class="key">or</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="com"># Call parent class constructor</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">locals_var_dict</span> <span class="op">=</span> <span class="nam">locals</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="com"># Input/Output files</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">io_dict</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">            <span class="str">'in'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">                <span class="str">'input_filename_shear'</span><span class="op">:</span> <span class="nam">input_filename_shear</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">                <span class="str">'input_filename_stretch'</span><span class="op">:</span> <span class="nam">input_filename_stretch</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">                <span class="str">'input_filename_stagger'</span><span class="op">:</span> <span class="nam">input_filename_stagger</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">                <span class="str">'input_filename_buckle'</span><span class="op">:</span> <span class="nam">input_filename_buckle</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">                <span class="str">'input_filename_propel'</span><span class="op">:</span> <span class="nam">input_filename_propel</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">                <span class="str">'input_filename_opening'</span><span class="op">:</span> <span class="nam">input_filename_opening</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">            <span class="op">}</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">            <span class="str">'out'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">                <span class="str">'output_csv_path'</span><span class="op">:</span> <span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">                <span class="str">'output_jpg_path'</span><span class="op">:</span> <span class="nam">output_jpg_path</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">            <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">base</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"base"</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="com"># Check the properties</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_properties</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">    <span class="op">@</span><span class="nam">launchlogger</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">    <span class="key">def</span> <span class="nam">launch</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">        <span class="str">"""Execute the :class:`IntraHelParCorrelation &lt;intrabp_correlations.intrahpcorr.IntraHelParCorrelation>` object."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">        <span class="com"># Setup Biobb</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">check_restart</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">            <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">stage_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">        <span class="com"># read input</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">        <span class="nam">shear</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_shear"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">        <span class="nam">stretch</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_stretch"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">        <span class="nam">stagger</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_stagger"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">        <span class="nam">buckle</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_buckle"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">        <span class="nam">propel</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_propel"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">        <span class="nam">opening</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_opening"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">        <span class="com"># get base</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">base</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">base</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">columns</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">        <span class="com"># make matrix</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">        <span class="com"># coordinates = ["shear", "stretch", "stagger", "buckle", "propel", "opening"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">        <span class="nam">coordinates</span> <span class="op">=</span> <span class="op">[</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">            <span class="str">"shear"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">        <span class="nam">corr_matrix</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">            <span class="nam">np</span><span class="op">.</span><span class="nam">eye</span><span class="op">(</span><span class="num">6</span><span class="op">,</span> <span class="num">6</span><span class="op">)</span><span class="op">,</span> <span class="nam">index</span><span class="op">=</span><span class="nam">coordinates</span><span class="op">,</span> <span class="nam">columns</span><span class="op">=</span><span class="nam">coordinates</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">        <span class="com"># shear</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["stretch"] = shear.corrwith(stretch, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">stretch</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["stagger"] = shear.corrwith(stagger, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">stagger</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["buckle"] = shear.corrwith(buckle, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">buckle</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["propel"] = shear.corrwith(propel, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">propel</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["opening"] = shear.corrwith(opening, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["shear"] = corr_matrix["shear"]["stretch"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["shear"] = corr_matrix["shear"]["stagger"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["shear"] = corr_matrix["shear"]["buckle"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["shear"] = corr_matrix["shear"]["propel"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["shear"] = corr_matrix["shear"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">        <span class="com"># stretch</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["stagger"] = stretch.corrwith(stagger, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stretch</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">stagger</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["buckle"] = stretch.corrwith(buckle, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stretch</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">buckle</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["propel"] = stretch.corrwith(propel, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stretch</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">propel</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["opening"] = stretch.corrwith(opening, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stretch</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["stretch"] = corr_matrix["stretch"]["stagger"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["stretch"] = corr_matrix["stretch"]["buckle"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["stretch"] = corr_matrix["stretch"]["propel"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["stretch"] = corr_matrix["stretch"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">        <span class="com"># stagger</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["buckle"] = stagger.corrwith(buckle, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stagger</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">buckle</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["propel"] = stagger.corrwith(propel, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stagger</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">propel</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["opening"] = stagger.corrwith(opening, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stagger</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["stagger"] = corr_matrix["stagger"]["buckle"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["stagger"] = corr_matrix["stagger"]["propel"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["stagger"] = corr_matrix["stagger"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="com"># buckle</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["propel"] = buckle.corrwith(propel, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">buckle</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">propel</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["opening"] = buckle.corrwith(opening, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">buckle</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["buckle"] = corr_matrix["buckle"]["propel"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["buckle"] = corr_matrix["buckle"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">        <span class="com"># propel</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["opening"] = propel.corrwith(opening, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">propel</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["propel"] = corr_matrix["propel"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t202" href="#t202">202</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t">        <span class="com"># save csv data</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t205" href="#t205">205</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">to_csv</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_csv_path"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t206" href="#t206">206</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t207" href="#t207">207</a></span><span class="t">        <span class="com"># create heatmap</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t208" href="#t208">208</a></span><span class="t">        <span class="nam">fig</span><span class="op">,</span> <span class="nam">axs</span> <span class="op">=</span> <span class="nam">plt</span><span class="op">.</span><span class="nam">subplots</span><span class="op">(</span><span class="num">1</span><span class="op">,</span> <span class="num">1</span><span class="op">,</span> <span class="nam">dpi</span><span class="op">=</span><span class="num">300</span><span class="op">,</span> <span class="nam">tight_layout</span><span class="op">=</span><span class="key">True</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t209" href="#t209">209</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">pcolor</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t210" href="#t210">210</a></span><span class="t">        <span class="com"># Loop over data dimensions and create text annotations.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t211" href="#t211">211</a></span><span class="t">        <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t212" href="#t212">212</a></span><span class="t">            <span class="key">for</span> <span class="nam">j</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t213" href="#t213">213</a></span><span class="t">                <span class="nam">axs</span><span class="op">.</span><span class="nam">text</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t214" href="#t214">214</a></span><span class="t">                    <span class="nam">j</span><span class="op">+</span><span class="num">.5</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t215" href="#t215">215</a></span><span class="t">                    <span class="nam">i</span><span class="op">+</span><span class="num">.5</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t216" href="#t216">216</a></span><span class="t">                    <span class="str">f"{corr_matrix[coordinates[j]].loc[coordinates[i]]:.2f}"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t217" href="#t217">217</a></span><span class="t">                    <span class="nam">ha</span><span class="op">=</span><span class="str">"center"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t218" href="#t218">218</a></span><span class="t">                    <span class="nam">va</span><span class="op">=</span><span class="str">"center"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t219" href="#t219">219</a></span><span class="t">                    <span class="nam">color</span><span class="op">=</span><span class="str">"w"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t220" href="#t220">220</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_xticks</span><span class="op">(</span><span class="op">[</span><span class="nam">i</span> <span class="op">+</span> <span class="num">0.5</span> <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t221" href="#t221">221</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_xticklabels</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">columns</span><span class="op">,</span> <span class="nam">rotation</span><span class="op">=</span><span class="num">90</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t222" href="#t222">222</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_yticks</span><span class="op">(</span><span class="op">[</span><span class="nam">i</span><span class="op">+</span><span class="num">0.5</span> <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t223" href="#t223">223</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_yticklabels</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">index</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t224" href="#t224">224</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_title</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t225" href="#t225">225</a></span><span class="t">            <span class="str">"Helical Parameter Correlation "</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t226" href="#t226">226</a></span><span class="t">            <span class="str">f"for Base Pair Step \'{self.base}\'"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t227" href="#t227">227</a></span><span class="t">        <span class="nam">fig</span><span class="op">.</span><span class="nam">tight_layout</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t228" href="#t228">228</a></span><span class="t">        <span class="nam">fig</span><span class="op">.</span><span class="nam">savefig</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t229" href="#t229">229</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">'out'</span><span class="op">]</span><span class="op">[</span><span class="str">'output_jpg_path'</span><span class="op">]</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t230" href="#t230">230</a></span><span class="t">            <span class="nam">format</span><span class="op">=</span><span class="str">"jpg"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t231" href="#t231">231</a></span><span class="t">        <span class="nam">plt</span><span class="op">.</span><span class="nam">close</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t232" href="#t232">232</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t233" href="#t233">233</a></span><span class="t">        <span class="com"># Copy files to host</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t234" href="#t234">234</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">copy_to_host</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t235" href="#t235">235</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t236" href="#t236">236</a></span><span class="t">        <span class="com"># Remove temporary file(s)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t237" href="#t237">237</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">tmp_files</span><span class="op">.</span><span class="nam">extend</span><span class="op">(</span><span class="op">[</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t238" href="#t238">238</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"unique_dir"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t239" href="#t239">239</a></span><span class="t">        <span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t240" href="#t240">240</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">remove_tmp_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t241" href="#t241">241</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t242" href="#t242">242</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="nam">output_files_created</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">raise_exception</span><span class="op">=</span><span class="key">False</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t243" href="#t243">243</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t244" href="#t244">244</a></span><span class="t">        <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t245" href="#t245">245</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t246" href="#t246">246</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_corr_method</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">corrtype1</span><span class="op">,</span> <span class="nam">corrtype2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t247" href="#t247">247</a></span><span class="t">        <span class="key">if</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"circular"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"linear"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t248" href="#t248">248</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t249" href="#t249">249</a></span><span class="t">        <span class="key">if</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"linear"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"circular"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t250" href="#t250">250</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t251" href="#t251">251</a></span><span class="t">        <span class="key">elif</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"circular"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"circular"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t252" href="#t252">252</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circular</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t253" href="#t253">253</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t254" href="#t254">254</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="str">"pearson"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t255" href="#t255">255</a></span><span class="t">        <span class="key">return</span> <span class="nam">method</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t256" href="#t256">256</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t257" href="#t257">257</a></span><span class="t">    <span class="op">@</span><span class="nam">staticmethod</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t258" href="#t258">258</a></span><span class="t">    <span class="key">def</span> <span class="nam">circular</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t259" href="#t259">259</a></span><span class="t">        <span class="nam">x1</span> <span class="op">=</span> <span class="nam">x1</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t260" href="#t260">260</a></span><span class="t">        <span class="nam">x2</span> <span class="op">=</span> <span class="nam">x2</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t261" href="#t261">261</a></span><span class="t">        <span class="nam">diff_1</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x1</span> <span class="op">-</span> <span class="nam">x1</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t262" href="#t262">262</a></span><span class="t">        <span class="nam">diff_2</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span> <span class="op">-</span> <span class="nam">x2</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t263" href="#t263">263</a></span><span class="t">        <span class="nam">num</span> <span class="op">=</span> <span class="op">(</span><span class="nam">diff_1</span> <span class="op">*</span> <span class="nam">diff_2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t264" href="#t264">264</a></span><span class="t">        <span class="nam">den</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sqrt</span><span class="op">(</span><span class="op">(</span><span class="nam">diff_1</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span> <span class="op">*</span> <span class="op">(</span><span class="nam">diff_2</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t265" href="#t265">265</a></span><span class="t">        <span class="key">return</span> <span class="nam">num</span> <span class="op">/</span> <span class="nam">den</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t266" href="#t266">266</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t267" href="#t267">267</a></span><span class="t">    <span class="op">@</span><span class="nam">staticmethod</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t268" href="#t268">268</a></span><span class="t">    <span class="key">def</span> <span class="nam">circlineal</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t269" href="#t269">269</a></span><span class="t">        <span class="nam">x2</span> <span class="op">=</span> <span class="nam">x2</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t270" href="#t270">270</a></span><span class="t">        <span class="nam">rc</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">cos</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t271" href="#t271">271</a></span><span class="t">        <span class="nam">rs</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t272" href="#t272">272</a></span><span class="t">        <span class="nam">rcs</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">cos</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t273" href="#t273">273</a></span><span class="t">        <span class="nam">num</span> <span class="op">=</span> <span class="op">(</span><span class="nam">rc</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span> <span class="op">+</span> <span class="op">(</span><span class="nam">rs</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span> <span class="op">-</span> <span class="num">2</span> <span class="op">*</span> <span class="nam">rc</span> <span class="op">*</span> <span class="nam">rs</span> <span class="op">*</span> <span class="nam">rcs</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t274" href="#t274">274</a></span><span class="t">        <span class="nam">den</span> <span class="op">=</span> <span class="num">1</span> <span class="op">-</span> <span class="op">(</span><span class="nam">rcs</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t275" href="#t275">275</a></span><span class="t">        <span class="nam">correlation</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sqrt</span><span class="op">(</span><span class="nam">num</span> <span class="op">/</span> <span class="nam">den</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t276" href="#t276">276</a></span><span class="t">        <span class="key">if</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span> <span class="op">&lt;</span> <span class="num">0</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t277" href="#t277">277</a></span><span class="t">            <span class="nam">correlation</span> <span class="op">*=</span> <span class="op">-</span><span class="num">1</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t278" href="#t278">278</a></span><span class="t">        <span class="key">return</span> <span class="nam">correlation</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t"><span class="str">    Examples:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t"><span class="str">        This is a use example of how to use the building block from Python::</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t"><span class="str">            from biobb_dna.intrabp_correlations.intrahpcorr import intrahpcorr</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t"><span class="str">            prop = {</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t"><span class="str">                'base': 'A',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t"><span class="str">            }</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t"><span class="str">            intrahpcorr(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t"><span class="str">                input_filename_shear='path/to/shear.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t"><span class="str">                input_filename_stretch='path/to/stretch.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t"><span class="str">                input_filename_stagger='path/to/stagger.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t"><span class="str">                input_filename_buckle='path/to/buckle.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t"><span class="str">                input_filename_propel='path/to/propel.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t"><span class="str">                input_filename_opening='path/to/opening.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t"><span class="str">                output_csv_path='path/to/output/file.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t"><span class="str">                output_jpg_path='path/to/output/file.jpg',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t"><span class="str">                properties=prop)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t"><span class="str">    Info:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t"><span class="str">        * wrapped_software:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t"><span class="str">            * name: In house</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t"><span class="str">            * license: Apache-2.0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t"><span class="str">        * ontology:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t"><span class="str">            * name: EDAM</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t"><span class="str">            * schema: http://edamontology.org/EDAM.owl</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">            <span class="nam">self</span><span class="op">,</span> <span class="nam">input_filename_shear</span><span class="op">,</span> <span class="nam">input_filename_stretch</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">            <span class="nam">input_filename_stagger</span><span class="op">,</span> <span class="nam">input_filename_buckle</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">            <span class="nam">input_filename_propel</span><span class="op">,</span> <span class="nam">input_filename_opening</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="nam">output_csv_path</span><span class="op">,</span> <span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">            <span class="nam">properties</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">        <span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span> <span class="key">or</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">        <span class="com"># Call parent class constructor</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">locals_var_dict</span> <span class="op">=</span> <span class="nam">locals</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">        <span class="com"># Input/Output files</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">io_dict</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">            <span class="str">'in'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">                <span class="str">'input_filename_shear'</span><span class="op">:</span> <span class="nam">input_filename_shear</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">                <span class="str">'input_filename_stretch'</span><span class="op">:</span> <span class="nam">input_filename_stretch</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">                <span class="str">'input_filename_stagger'</span><span class="op">:</span> <span class="nam">input_filename_stagger</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">                <span class="str">'input_filename_buckle'</span><span class="op">:</span> <span class="nam">input_filename_buckle</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">                <span class="str">'input_filename_propel'</span><span class="op">:</span> <span class="nam">input_filename_propel</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">                <span class="str">'input_filename_opening'</span><span class="op">:</span> <span class="nam">input_filename_opening</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">            <span class="op">}</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">            <span class="str">'out'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">                <span class="str">'output_csv_path'</span><span class="op">:</span> <span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">                <span class="str">'output_jpg_path'</span><span class="op">:</span> <span class="nam">output_jpg_path</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">            <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">base</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"base"</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">        <span class="com"># Check the properties</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_properties</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">    <span class="op">@</span><span class="nam">launchlogger</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">    <span class="key">def</span> <span class="nam">launch</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">        <span class="str">"""Execute the :class:`IntraHelParCorrelation &lt;intrabp_correlations.intrahpcorr.IntraHelParCorrelation>` object."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">        <span class="com"># Setup Biobb</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">check_restart</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">            <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">stage_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">        <span class="com"># read input</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">        <span class="nam">shear</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_shear"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">        <span class="nam">stretch</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_stretch"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">        <span class="nam">stagger</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_stagger"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">        <span class="nam">buckle</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_buckle"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">        <span class="nam">propel</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_propel"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">        <span class="nam">opening</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_opening"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">        <span class="com"># get base</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">base</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">base</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">columns</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">        <span class="com"># make matrix</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">        <span class="com"># coordinates = ["shear", "stretch", "stagger", "buckle", "propel", "opening"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">        <span class="nam">coordinates</span> <span class="op">=</span> <span class="op">[</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">            <span class="str">"shear"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">        <span class="nam">corr_matrix</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">            <span class="nam">np</span><span class="op">.</span><span class="nam">eye</span><span class="op">(</span><span class="num">6</span><span class="op">,</span> <span class="num">6</span><span class="op">)</span><span class="op">,</span> <span class="nam">index</span><span class="op">=</span><span class="nam">coordinates</span><span class="op">,</span> <span class="nam">columns</span><span class="op">=</span><span class="nam">coordinates</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">        <span class="com"># shear</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["stretch"] = shear.corrwith(stretch, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">stretch</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["stagger"] = shear.corrwith(stagger, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">stagger</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["buckle"] = shear.corrwith(buckle, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">buckle</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["propel"] = shear.corrwith(propel, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">propel</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">        <span class="com"># corr_matrix["shear"]["opening"] = shear.corrwith(opening, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shear</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["shear"] = corr_matrix["shear"]["stretch"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["shear"] = corr_matrix["shear"]["stagger"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["shear"] = corr_matrix["shear"]["buckle"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["shear"] = corr_matrix["shear"]["propel"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["shear"] = corr_matrix["shear"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shear"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">        <span class="com"># stretch</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["stagger"] = stretch.corrwith(stagger, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stretch</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">stagger</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["buckle"] = stretch.corrwith(buckle, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stretch</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">buckle</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["propel"] = stretch.corrwith(propel, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stretch</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">propel</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">        <span class="com"># corr_matrix["stretch"]["opening"] = stretch.corrwith(opening, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stretch</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["stretch"] = corr_matrix["stretch"]["stagger"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["stretch"] = corr_matrix["stretch"]["buckle"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["stretch"] = corr_matrix["stretch"]["propel"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["stretch"] = corr_matrix["stretch"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stretch"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">        <span class="com"># stagger</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["buckle"] = stagger.corrwith(buckle, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stagger</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">buckle</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["propel"] = stagger.corrwith(propel, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stagger</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">propel</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="com"># corr_matrix["stagger"]["opening"] = stagger.corrwith(opening, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">stagger</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["stagger"] = corr_matrix["stagger"]["buckle"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["stagger"] = corr_matrix["stagger"]["propel"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["stagger"] = corr_matrix["stagger"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"stagger"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">        <span class="com"># buckle</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["propel"] = buckle.corrwith(propel, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">buckle</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">propel</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">        <span class="com"># corr_matrix["buckle"]["opening"] = buckle.corrwith(opening, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">buckle</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["buckle"] = corr_matrix["buckle"]["propel"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["buckle"] = corr_matrix["buckle"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"buckle"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">        <span class="com"># propel</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">        <span class="com"># corr_matrix["propel"]["opening"] = propel.corrwith(opening, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">propel</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">opening</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">        <span class="com"># corr_matrix["opening"]["propel"] = corr_matrix["propel"]["opening"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"propel"</span><span class="op">,</span> <span class="str">"opening"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"opening"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t202" href="#t202">202</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t">        <span class="com"># save csv data</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">to_csv</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_csv_path"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t205" href="#t205">205</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t206" href="#t206">206</a></span><span class="t">        <span class="com"># create heatmap</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t207" href="#t207">207</a></span><span class="t">        <span class="nam">fig</span><span class="op">,</span> <span class="nam">axs</span> <span class="op">=</span> <span class="nam">plt</span><span class="op">.</span><span class="nam">subplots</span><span class="op">(</span><span class="num">1</span><span class="op">,</span> <span class="num">1</span><span class="op">,</span> <span class="nam">dpi</span><span class="op">=</span><span class="num">300</span><span class="op">,</span> <span class="nam">tight_layout</span><span class="op">=</span><span class="key">True</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t208" href="#t208">208</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">pcolor</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t209" href="#t209">209</a></span><span class="t">        <span class="com"># Loop over data dimensions and create text annotations.</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t210" href="#t210">210</a></span><span class="t">        <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t211" href="#t211">211</a></span><span class="t">            <span class="key">for</span> <span class="nam">j</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t212" href="#t212">212</a></span><span class="t">                <span class="nam">axs</span><span class="op">.</span><span class="nam">text</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t213" href="#t213">213</a></span><span class="t">                    <span class="nam">j</span><span class="op">+</span><span class="num">.5</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t214" href="#t214">214</a></span><span class="t">                    <span class="nam">i</span><span class="op">+</span><span class="num">.5</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t215" href="#t215">215</a></span><span class="t">                    <span class="str">f"{corr_matrix[coordinates[j]].loc[coordinates[i]]:.2f}"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t216" href="#t216">216</a></span><span class="t">                    <span class="nam">ha</span><span class="op">=</span><span class="str">"center"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t217" href="#t217">217</a></span><span class="t">                    <span class="nam">va</span><span class="op">=</span><span class="str">"center"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t218" href="#t218">218</a></span><span class="t">                    <span class="nam">color</span><span class="op">=</span><span class="str">"w"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t219" href="#t219">219</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_xticks</span><span class="op">(</span><span class="op">[</span><span class="nam">i</span> <span class="op">+</span> <span class="num">0.5</span> <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t220" href="#t220">220</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_xticklabels</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">columns</span><span class="op">,</span> <span class="nam">rotation</span><span class="op">=</span><span class="num">90</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t221" href="#t221">221</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_yticks</span><span class="op">(</span><span class="op">[</span><span class="nam">i</span><span class="op">+</span><span class="num">0.5</span> <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t222" href="#t222">222</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_yticklabels</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">index</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t223" href="#t223">223</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_title</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t224" href="#t224">224</a></span><span class="t">            <span class="str">"Helical Parameter Correlation "</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t225" href="#t225">225</a></span><span class="t">            <span class="str">f"for Base Pair Step \'{self.base}\'"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t226" href="#t226">226</a></span><span class="t">        <span class="nam">fig</span><span class="op">.</span><span class="nam">tight_layout</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t227" href="#t227">227</a></span><span class="t">        <span class="nam">fig</span><span class="op">.</span><span class="nam">savefig</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t228" href="#t228">228</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">'out'</span><span class="op">]</span><span class="op">[</span><span class="str">'output_jpg_path'</span><span class="op">]</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t229" href="#t229">229</a></span><span class="t">            <span class="nam">format</span><span class="op">=</span><span class="str">"jpg"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t230" href="#t230">230</a></span><span class="t">        <span class="nam">plt</span><span class="op">.</span><span class="nam">close</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t231" href="#t231">231</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t232" href="#t232">232</a></span><span class="t">        <span class="com"># Copy files to host</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t233" href="#t233">233</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">copy_to_host</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t234" href="#t234">234</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t235" href="#t235">235</a></span><span class="t">        <span class="com"># Remove temporary file(s)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t236" href="#t236">236</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">tmp_files</span><span class="op">.</span><span class="nam">extend</span><span class="op">(</span><span class="op">[</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t237" href="#t237">237</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"unique_dir"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t238" href="#t238">238</a></span><span class="t">        <span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t239" href="#t239">239</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">remove_tmp_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t240" href="#t240">240</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t241" href="#t241">241</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="nam">output_files_created</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">raise_exception</span><span class="op">=</span><span class="key">False</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t242" href="#t242">242</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t243" href="#t243">243</a></span><span class="t">        <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t244" href="#t244">244</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t245" href="#t245">245</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_corr_method</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">corrtype1</span><span class="op">,</span> <span class="nam">corrtype2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t246" href="#t246">246</a></span><span class="t">        <span class="key">if</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"circular"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"linear"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t247" href="#t247">247</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t248" href="#t248">248</a></span><span class="t">        <span class="key">if</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"linear"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"circular"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t249" href="#t249">249</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t250" href="#t250">250</a></span><span class="t">        <span class="key">elif</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"circular"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"circular"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t251" href="#t251">251</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circular</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t252" href="#t252">252</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t253" href="#t253">253</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="str">"pearson"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t254" href="#t254">254</a></span><span class="t">        <span class="key">return</span> <span class="nam">method</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t255" href="#t255">255</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t256" href="#t256">256</a></span><span class="t">    <span class="op">@</span><span class="nam">staticmethod</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t257" href="#t257">257</a></span><span class="t">    <span class="key">def</span> <span class="nam">circular</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t258" href="#t258">258</a></span><span class="t">        <span class="nam">x1</span> <span class="op">=</span> <span class="nam">x1</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t259" href="#t259">259</a></span><span class="t">        <span class="nam">x2</span> <span class="op">=</span> <span class="nam">x2</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t260" href="#t260">260</a></span><span class="t">        <span class="nam">diff_1</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x1</span> <span class="op">-</span> <span class="nam">x1</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t261" href="#t261">261</a></span><span class="t">        <span class="nam">diff_2</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span> <span class="op">-</span> <span class="nam">x2</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t262" href="#t262">262</a></span><span class="t">        <span class="nam">num</span> <span class="op">=</span> <span class="op">(</span><span class="nam">diff_1</span> <span class="op">*</span> <span class="nam">diff_2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t263" href="#t263">263</a></span><span class="t">        <span class="nam">den</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sqrt</span><span class="op">(</span><span class="op">(</span><span class="nam">diff_1</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span> <span class="op">*</span> <span class="op">(</span><span class="nam">diff_2</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t264" href="#t264">264</a></span><span class="t">        <span class="key">return</span> <span class="nam">num</span> <span class="op">/</span> <span class="nam">den</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t265" href="#t265">265</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t266" href="#t266">266</a></span><span class="t">    <span class="op">@</span><span class="nam">staticmethod</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t267" href="#t267">267</a></span><span class="t">    <span class="key">def</span> <span class="nam">circlineal</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t268" href="#t268">268</a></span><span class="t">        <span class="nam">x2</span> <span class="op">=</span> <span class="nam">x2</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t269" href="#t269">269</a></span><span class="t">        <span class="nam">rc</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">cos</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t270" href="#t270">270</a></span><span class="t">        <span class="nam">rs</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t271" href="#t271">271</a></span><span class="t">        <span class="nam">rcs</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">cos</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t272" href="#t272">272</a></span><span class="t">        <span class="nam">num</span> <span class="op">=</span> <span class="op">(</span><span class="nam">rc</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span> <span class="op">+</span> <span class="op">(</span><span class="nam">rs</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span> <span class="op">-</span> <span class="num">2</span> <span class="op">*</span> <span class="nam">rc</span> <span class="op">*</span> <span class="nam">rs</span> <span class="op">*</span> <span class="nam">rcs</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t273" href="#t273">273</a></span><span class="t">        <span class="nam">den</span> <span class="op">=</span> <span class="num">1</span> <span class="op">-</span> <span class="op">(</span><span class="nam">rcs</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t274" href="#t274">274</a></span><span class="t">        <span class="nam">correlation</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sqrt</span><span class="op">(</span><span class="nam">num</span> <span class="op">/</span> <span class="nam">den</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t275" href="#t275">275</a></span><span class="t">        <span class="key">if</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span> <span class="op">&lt;</span> <span class="num">0</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t276" href="#t276">276</a></span><span class="t">            <span class="nam">correlation</span> <span class="op">*=</span> <span class="op">-</span><span class="num">1</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t277" href="#t277">277</a></span><span class="t">        <span class="key">return</span> <span class="nam">correlation</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t278" href="#t278">278</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t279" href="#t279">279</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t280" href="#t280">280</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t281" href="#t281">281</a></span><span class="t"><span class="key">def</span> <span class="nam">intrahpcorr</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t282" href="#t282">282</a></span><span class="t">        <span class="nam">input_filename_shear</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_stretch</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t283" href="#t283">283</a></span><span class="t">        <span class="nam">input_filename_stagger</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_buckle</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t284" href="#t284">284</a></span><span class="t">        <span class="nam">input_filename_propel</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_opening</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t285" href="#t285">285</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">output_jpg_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t286" href="#t286">286</a></span><span class="t">        <span class="nam">properties</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t287" href="#t287">287</a></span><span class="t">    <span class="str">"""Create :class:`IntraHelParCorrelation &lt;intrabp_correlations.intrahpcorr.IntraHelParCorrelation>` class and</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t288" href="#t288">288</a></span><span class="t"><span class="str">    execute the :meth:`launch() &lt;intrabp_correlations.intrahpcorr.IntraHelParCorrelation.launch>` method."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t289" href="#t289">289</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t290" href="#t290">290</a></span><span class="t">    <span class="key">return</span> <span class="nam">IntraHelParCorrelation</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t291" href="#t291">291</a></span><span class="t">        <span class="nam">input_filename_shear</span><span class="op">=</span><span class="nam">input_filename_shear</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t292" href="#t292">292</a></span><span class="t">        <span class="nam">input_filename_stretch</span><span class="op">=</span><span class="nam">input_filename_stretch</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t293" href="#t293">293</a></span><span class="t">        <span class="nam">input_filename_stagger</span><span class="op">=</span><span class="nam">input_filename_stagger</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t294" href="#t294">294</a></span><span class="t">        <span class="nam">input_filename_buckle</span><span class="op">=</span><span class="nam">input_filename_buckle</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t295" href="#t295">295</a></span><span class="t">        <span class="nam">input_filename_propel</span><span class="op">=</span><span class="nam">input_filename_propel</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t296" href="#t296">296</a></span><span class="t">        <span class="nam">input_filename_opening</span><span class="op">=</span><span class="nam">input_filename_opening</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t297" href="#t297">297</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">=</span><span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t298" href="#t298">298</a></span><span class="t">        <span class="nam">output_jpg_path</span><span class="op">=</span><span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t299" href="#t299">299</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span><span class="op">.</span><span class="nam">launch</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t280" href="#t280">280</a></span><span class="t"><span class="key">def</span> <span class="nam">intrahpcorr</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t281" href="#t281">281</a></span><span class="t">        <span class="nam">input_filename_shear</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_stretch</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t282" href="#t282">282</a></span><span class="t">        <span class="nam">input_filename_stagger</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_buckle</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t283" href="#t283">283</a></span><span class="t">        <span class="nam">input_filename_propel</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_opening</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t284" href="#t284">284</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">output_jpg_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t285" href="#t285">285</a></span><span class="t">        <span class="nam">properties</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t286" href="#t286">286</a></span><span class="t">    <span class="str">"""Create :class:`IntraHelParCorrelation &lt;intrabp_correlations.intrahpcorr.IntraHelParCorrelation>` class and</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t287" href="#t287">287</a></span><span class="t"><span class="str">    execute the :meth:`launch() &lt;intrabp_correlations.intrahpcorr.IntraHelParCorrelation.launch>` method."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t288" href="#t288">288</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t289" href="#t289">289</a></span><span class="t">    <span class="key">return</span> <span class="nam">IntraHelParCorrelation</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t290" href="#t290">290</a></span><span class="t">        <span class="nam">input_filename_shear</span><span class="op">=</span><span class="nam">input_filename_shear</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t291" href="#t291">291</a></span><span class="t">        <span class="nam">input_filename_stretch</span><span class="op">=</span><span class="nam">input_filename_stretch</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t292" href="#t292">292</a></span><span class="t">        <span class="nam">input_filename_stagger</span><span class="op">=</span><span class="nam">input_filename_stagger</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t293" href="#t293">293</a></span><span class="t">        <span class="nam">input_filename_buckle</span><span class="op">=</span><span class="nam">input_filename_buckle</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t294" href="#t294">294</a></span><span class="t">        <span class="nam">input_filename_propel</span><span class="op">=</span><span class="nam">input_filename_propel</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t295" href="#t295">295</a></span><span class="t">        <span class="nam">input_filename_opening</span><span class="op">=</span><span class="nam">input_filename_opening</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t296" href="#t296">296</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">=</span><span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t297" href="#t297">297</a></span><span class="t">        <span class="nam">output_jpg_path</span><span class="op">=</span><span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t298" href="#t298">298</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span><span class="op">.</span><span class="nam">launch</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t299" href="#t299">299</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t300" href="#t300">300</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t301" href="#t301">301</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t302" href="#t302">302</a></span><span class="t"><span class="key">def</span> <span class="nam">main</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t303" href="#t303">303</a></span><span class="t">    <span class="str">"""Command line execution of this building block. Please check the command line documentation."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t304" href="#t304">304</a></span><span class="t">    <span class="nam">parser</span> <span class="op">=</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">ArgumentParser</span><span class="op">(</span><span class="nam">description</span><span class="op">=</span><span class="str">'Load helical parameter file and save base data individually.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t305" href="#t305">305</a></span><span class="t">                                     <span class="nam">formatter_class</span><span class="op">=</span><span class="key">lambda</span> <span class="nam">prog</span><span class="op">:</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">RawTextHelpFormatter</span><span class="op">(</span><span class="nam">prog</span><span class="op">,</span> <span class="nam">width</span><span class="op">=</span><span class="num">99999</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t306" href="#t306">306</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--config'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">help</span><span class="op">=</span><span class="str">'Configuration file'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t307" href="#t307">307</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t308" href="#t308">308</a></span><span class="t">    <span class="nam">required_args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument_group</span><span class="op">(</span><span class="str">'required arguments'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t309" href="#t309">309</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_shear'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t310" href="#t310">310</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t311" href="#t311">311</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_stretch'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t312" href="#t312">312</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t313" href="#t313">313</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_stagger'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t314" href="#t314">314</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t315" href="#t315">315</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_buckle'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t316" href="#t316">316</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t317" href="#t317">317</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_propel'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t318" href="#t318">318</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t319" href="#t319">319</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_opening'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t320" href="#t320">320</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t321" href="#t321">321</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_csv_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t322" href="#t322">322</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to output file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t323" href="#t323">323</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_jpg_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t324" href="#t324">324</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to output file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t325" href="#t325">325</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t326" href="#t326">326</a></span><span class="t">    <span class="nam">args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">parse_args</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t327" href="#t327">327</a></span><span class="t">    <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="op">=</span> <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="key">or</span> <span class="str">"{}"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t328" href="#t328">328</a></span><span class="t">    <span class="nam">properties</span> <span class="op">=</span> <span class="nam">settings</span><span class="op">.</span><span class="nam">ConfReader</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">config</span><span class="op">)</span><span class="op">.</span><span class="nam">get_prop_dic</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t329" href="#t329">329</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t330" href="#t330">330</a></span><span class="t">    <span class="nam">intrahpcorr</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t331" href="#t331">331</a></span><span class="t">        <span class="nam">input_filename_shear</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_shear</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t332" href="#t332">332</a></span><span class="t">        <span class="nam">input_filename_stretch</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_stretch</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t333" href="#t333">333</a></span><span class="t">        <span class="nam">input_filename_stagger</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_stagger</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t334" href="#t334">334</a></span><span class="t">        <span class="nam">input_filename_buckle</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_buckle</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t335" href="#t335">335</a></span><span class="t">        <span class="nam">input_filename_propel</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_propel</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t336" href="#t336">336</a></span><span class="t">        <span class="nam">input_filename_opening</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_opening</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t337" href="#t337">337</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t338" href="#t338">338</a></span><span class="t">        <span class="nam">output_jpg_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t339" href="#t339">339</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t301" href="#t301">301</a></span><span class="t"><span class="key">def</span> <span class="nam">main</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t302" href="#t302">302</a></span><span class="t">    <span class="str">"""Command line execution of this building block. Please check the command line documentation."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t303" href="#t303">303</a></span><span class="t">    <span class="nam">parser</span> <span class="op">=</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">ArgumentParser</span><span class="op">(</span><span class="nam">description</span><span class="op">=</span><span class="str">'Load helical parameter file and save base data individually.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t304" href="#t304">304</a></span><span class="t">                                     <span class="nam">formatter_class</span><span class="op">=</span><span class="key">lambda</span> <span class="nam">prog</span><span class="op">:</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">RawTextHelpFormatter</span><span class="op">(</span><span class="nam">prog</span><span class="op">,</span> <span class="nam">width</span><span class="op">=</span><span class="num">99999</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t305" href="#t305">305</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--config'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">help</span><span class="op">=</span><span class="str">'Configuration file'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t306" href="#t306">306</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t307" href="#t307">307</a></span><span class="t">    <span class="nam">required_args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument_group</span><span class="op">(</span><span class="str">'required arguments'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t308" href="#t308">308</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_shear'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t309" href="#t309">309</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t310" href="#t310">310</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_stretch'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t311" href="#t311">311</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t312" href="#t312">312</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_stagger'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t313" href="#t313">313</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t314" href="#t314">314</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_buckle'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t315" href="#t315">315</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t316" href="#t316">316</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_propel'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t317" href="#t317">317</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t318" href="#t318">318</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_opening'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t319" href="#t319">319</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t320" href="#t320">320</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_csv_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t321" href="#t321">321</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to output file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t322" href="#t322">322</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_jpg_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t323" href="#t323">323</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to output file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t324" href="#t324">324</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t325" href="#t325">325</a></span><span class="t">    <span class="nam">args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">parse_args</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t326" href="#t326">326</a></span><span class="t">    <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="op">=</span> <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="key">or</span> <span class="str">"{}"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t327" href="#t327">327</a></span><span class="t">    <span class="nam">properties</span> <span class="op">=</span> <span class="nam">settings</span><span class="op">.</span><span class="nam">ConfReader</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">config</span><span class="op">)</span><span class="op">.</span><span class="nam">get_prop_dic</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t328" href="#t328">328</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t329" href="#t329">329</a></span><span class="t">    <span class="nam">intrahpcorr</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t330" href="#t330">330</a></span><span class="t">        <span class="nam">input_filename_shear</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_shear</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t331" href="#t331">331</a></span><span class="t">        <span class="nam">input_filename_stretch</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_stretch</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t332" href="#t332">332</a></span><span class="t">        <span class="nam">input_filename_stagger</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_stagger</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t333" href="#t333">333</a></span><span class="t">        <span class="nam">input_filename_buckle</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_buckle</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t334" href="#t334">334</a></span><span class="t">        <span class="nam">input_filename_propel</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_propel</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t335" href="#t335">335</a></span><span class="t">        <span class="nam">input_filename_opening</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_opening</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t336" href="#t336">336</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t337" href="#t337">337</a></span><span class="t">        <span class="nam">output_jpg_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t338" href="#t338">338</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t339" href="#t339">339</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t340" href="#t340">340</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t341" href="#t341">341</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t342" href="#t342">342</a></span><span class="t"><span class="key">if</span> <span class="nam">__name__</span> <span class="op">==</span> <span class="str">'__main__'</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t343" href="#t343">343</a></span><span class="t">    <span class="nam">main</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t341" href="#t341">341</a></span><span class="t"><span class="key">if</span> <span class="nam">__name__</span> <span class="op">==</span> <span class="str">'__main__'</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t342" href="#t342">342</a></span><span class="t">    <span class="nam">main</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
 </main>
 <footer>
     <div class="content">
@@ -432,7 +431,7 @@ <h2>
             <a class="nav" href="z_64e03be4370b7ecc_intraseqcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_64e03be4370b7ecc_intraseqcorr_py.html b/coverage/z_64e03be4370b7ecc_intraseqcorr_py.html
index 555e8f58..47af3500 100644
--- a/coverage/z_64e03be4370b7ecc_intraseqcorr_py.html
+++ b/coverage/z_64e03be4370b7ecc_intraseqcorr_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_9de9475b0a6fab52___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -324,7 +324,7 @@ <h2>
             <a class="nav" href="z_9de9475b0a6fab52___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_74fa14c6d0e940a4___init___py.html b/coverage/z_74fa14c6d0e940a4___init___py.html
index 35e51c95..8302f2ae 100644
--- a/coverage/z_74fa14c6d0e940a4___init___py.html
+++ b/coverage/z_74fa14c6d0e940a4___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_74fa14c6d0e940a4_biobb_canal_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -91,7 +91,7 @@ <h2>
             <a class="nav" href="z_74fa14c6d0e940a4_biobb_canal_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_74fa14c6d0e940a4_biobb_canal_py.html b/coverage/z_74fa14c6d0e940a4_biobb_canal_py.html
index dc9992eb..f3300395 100644
--- a/coverage/z_74fa14c6d0e940a4_biobb_canal_py.html
+++ b/coverage/z_74fa14c6d0e940a4_biobb_canal_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_74fa14c6d0e940a4_biobb_canion_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -328,7 +328,7 @@ <h2>
             <a class="nav" href="z_74fa14c6d0e940a4_biobb_canion_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_74fa14c6d0e940a4_biobb_canion_py.html b/coverage/z_74fa14c6d0e940a4_biobb_canion_py.html
index 76eaa736..edc0ace3 100644
--- a/coverage/z_74fa14c6d0e940a4_biobb_canion_py.html
+++ b/coverage/z_74fa14c6d0e940a4_biobb_canion_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_74fa14c6d0e940a4_biobb_curves_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -340,7 +340,7 @@ <h2>
             <a class="nav" href="z_74fa14c6d0e940a4_biobb_curves_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_74fa14c6d0e940a4_biobb_curves_py.html b/coverage/z_74fa14c6d0e940a4_biobb_curves_py.html
index fecb6ce6..ac644712 100644
--- a/coverage/z_74fa14c6d0e940a4_biobb_curves_py.html
+++ b/coverage/z_74fa14c6d0e940a4_biobb_curves_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_74fa14c6d0e940a4_canal_unzip_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -392,7 +392,7 @@ <h2>
             <a class="nav" href="z_74fa14c6d0e940a4_canal_unzip_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_74fa14c6d0e940a4_canal_unzip_py.html b/coverage/z_74fa14c6d0e940a4_canal_unzip_py.html
index 251eda12..d98c3a4e 100644
--- a/coverage/z_74fa14c6d0e940a4_canal_unzip_py.html
+++ b/coverage/z_74fa14c6d0e940a4_canal_unzip_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_3afbcd666ed82c91___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -109,200 +109,201 @@ <h2>
     <p class="pln"><span class="n"><a id="t27" href="#t27">27</a></span><span class="t"><span class="str">            * **correlation** (*str*) - (None) Correlation indexes separated by underscore (ie '98_165'), only for 'corr' type.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t28" href="#t28">28</a></span><span class="t"><span class="str">            * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t29" href="#t29">29</a></span><span class="t"><span class="str">            * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t30" href="#t30">30</a></span><span class="t"><span class="str">    Examples:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t31" href="#t31">31</a></span><span class="t"><span class="str">        This is a use example of how to use the building block from Python::</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t32" href="#t32">32</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t"><span class="str">            from biobb_dna.curvesplus.canal_unzip import canal_unzip</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t"><span class="str">            prop = {</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t"><span class="str">                'type': 'series',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t"><span class="str">                'helpar_name': 'alphaC'</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t"><span class="str">            }</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t"><span class="str">            canal_unzip(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t"><span class="str">                input_zip_file='/path/to/canal/output.zip',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t"><span class="str">                output_path='/path/to/output.ser',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t"><span class="str">                output_list_path='/path/to/output.txt'</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t"><span class="str">                properties=prop)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t"><span class="str">    Info:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t"><span class="str">        * wrapped_software:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t"><span class="str">            * name: In house</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t"><span class="str">            * license: Apache-2.0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t"><span class="str">        * ontology:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t"><span class="str">            * name: EDAM</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t"><span class="str">            * schema: http://edamontology.org/EDAM.owl</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t">                 <span class="nam">output_path</span><span class="op">,</span> <span class="nam">output_list_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">properties</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t">        <span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span> <span class="key">or</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t">        <span class="com"># Call parent class constructor</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">locals_var_dict</span> <span class="op">=</span> <span class="nam">locals</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t">        <span class="com"># Input/Output files</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">io_dict</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">            <span class="str">'in'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">                <span class="str">'input_zip_file'</span><span class="op">:</span> <span class="nam">input_zip_file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">            <span class="op">}</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">            <span class="str">'out'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">                <span class="str">'output_path'</span><span class="op">:</span> <span class="nam">output_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">                <span class="str">'output_list_path'</span><span class="op">:</span> <span class="nam">output_list_path</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">            <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">        <span class="com"># Properties specific for BB</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'type'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">helpar_name</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'helpar_name'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">correlation</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'correlation'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">        <span class="com"># Check the properties</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_properties</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">    <span class="op">@</span><span class="nam">launchlogger</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">    <span class="key">def</span> <span class="nam">launch</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">        <span class="str">"""Execute the :class:`CanalUnzip &lt;biobb_dna.curvesplus.canal_unzip.CanalUnzip>` object."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">        <span class="com"># Setup Biobb</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">check_restart</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">            <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">stage_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">        <span class="com"># Check that both properties are set</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">"Property 'type' is mandatory to run CanalUnzip. Please set it."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">        <span class="com"># Check that helpar_name is set if type is series or histo</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">in</span> <span class="op">[</span><span class="str">"series"</span><span class="op">,</span> <span class="str">"histo"</span><span class="op">]</span> <span class="key">and</span> <span class="nam">self</span><span class="op">.</span><span class="nam">helpar_name</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">"Property 'helpar_name' is mandatory to run CanalUnzip with type 'series' or 'histo'. Please set it."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">        <span class="com"># Check that correlation is set if type is corr</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="op">==</span> <span class="str">"corr"</span> <span class="key">and</span> <span class="nam">self</span><span class="op">.</span><span class="nam">correlation</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">"Property 'correlation' is mandatory to run CanalUnzip with type 'corr'. Please set it."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">        <span class="nam">extensions</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">            <span class="str">"series"</span><span class="op">:</span> <span class="str">"ser"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">            <span class="str">"histo"</span><span class="op">:</span> <span class="str">"his"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">            <span class="str">"corr"</span><span class="op">:</span> <span class="str">"cor"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">        <span class="com"># Check that the type is valid</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">not</span> <span class="key">in</span> <span class="nam">extensions</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Type {self.type} not valid. Valid types are: {', '.join(extensions.keys())}."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">        <span class="com"># generate sufix</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">        <span class="nam">sufix</span> <span class="op">=</span> <span class="str">""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="op">==</span> <span class="str">"corr"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">            <span class="com"># Check that the correlation is valid</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">            <span class="nam">pattern</span> <span class="op">=</span> <span class="str">r'\d+_\d+'</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">            <span class="key">if</span> <span class="key">not</span> <span class="nam">re</span><span class="op">.</span><span class="nam">match</span><span class="op">(</span><span class="nam">pattern</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">correlation</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Correlation {self.correlation} not valid. It should match the pattern &lt;number_number>."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">            <span class="nam">sufix</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">correlation</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">            <span class="com"># Check that the helpar_name is valid</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">            <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">helpar_name</span> <span class="key">not</span> <span class="key">in</span> <span class="op">[</span><span class="str">"alphaC"</span><span class="op">,</span> <span class="str">"alphaW"</span><span class="op">,</span> <span class="str">"ampC"</span><span class="op">,</span> <span class="str">"ampW"</span><span class="op">,</span> <span class="str">"ax-bend"</span><span class="op">,</span> <span class="str">"betaC"</span><span class="op">,</span> <span class="str">"betaW"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">                                        <span class="str">"chiC"</span><span class="op">,</span> <span class="str">"chiW"</span><span class="op">,</span> <span class="str">"curv"</span><span class="op">,</span> <span class="str">"deltaC"</span><span class="op">,</span> <span class="str">"deltaW"</span><span class="op">,</span> <span class="str">"epsilC"</span><span class="op">,</span> <span class="str">"epsilW"</span><span class="op">,</span> <span class="str">"gammaC"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">                                        <span class="str">"gammaW"</span><span class="op">,</span> <span class="str">"h-ris"</span><span class="op">,</span> <span class="str">"h-twi"</span><span class="op">,</span> <span class="str">"inclin"</span><span class="op">,</span> <span class="str">"majd"</span><span class="op">,</span> <span class="str">"majw"</span><span class="op">,</span> <span class="str">"mind"</span><span class="op">,</span> <span class="str">"minw"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">                                        <span class="str">"opening"</span><span class="op">,</span> <span class="str">"phaseC"</span><span class="op">,</span> <span class="str">"phaseW"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">,</span> <span class="str">"reg"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">                                        <span class="str">"shift"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">,</span> <span class="str">"tbend"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">,</span> <span class="str">"tip"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">                                        <span class="str">"xdisp"</span><span class="op">,</span> <span class="str">"ydisp"</span><span class="op">,</span> <span class="str">"zetaC"</span><span class="op">,</span> <span class="str">"zetaW"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Parameter {self.helpar_name} not valid. Valid parameters are: alphaC, alphaW, ampC, ampW, ax-bend, betaC, betaW, buckle, chiC, chiW, curv, deltaC, deltaW, epsilC, epsilW, gammaC, gammaW, h-ris, h-twi, inclin, majd, majw, mind, minw, opening, phaseC, phaseW, propel, reg, rise, roll, shear, shift, slide, stagger, stretch, tbend, tilt, tip, twist, xdisp, ydisp, zetaC, zetaW."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">            <span class="nam">sufix</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">helpar_name</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">        <span class="com"># Generate the filename</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">        <span class="nam">filename</span> <span class="op">=</span> <span class="str">f"canal_output_{sufix}.{extensions[self.type]}"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">        <span class="com"># Unzip the file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">        <span class="key">with</span> <span class="nam">zipfile</span><span class="op">.</span><span class="nam">ZipFile</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_zip_file"</span><span class="op">]</span><span class="op">,</span> <span class="str">'r'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">zip_ref</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">            <span class="com"># Check if the file exists in the zip file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">            <span class="key">if</span> <span class="nam">filename</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">                <span class="com"># Extract the file</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f'{filename} exists, copying into {self.stage_io_dict["out"]["output_path"]}.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">                <span class="key">with</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">open</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span> <span class="key">as</span> <span class="nam">source</span><span class="op">,</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_path"</span><span class="op">]</span><span class="op">,</span> <span class="str">"wb"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">target</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">                    <span class="nam">shutil</span><span class="op">.</span><span class="nam">copyfileobj</span><span class="op">(</span><span class="nam">source</span><span class="op">,</span> <span class="nam">target</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"File {filename} not found in the zip file."</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">            <span class="com"># Write the list of files</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">            <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_list_path"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">                <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_list_path"</span><span class="op">]</span><span class="op">,</span> <span class="str">"w"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">                    <span class="key">for</span> <span class="nam">name</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">                        <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="str">f"{name}\n"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">        <span class="com"># Run Biobb block</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">        <span class="com"># self.run_biobb()</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">        <span class="com"># Copy files to host</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">copy_to_host</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">        <span class="com"># Remove temporary file(s)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">tmp_files</span><span class="op">.</span><span class="nam">extend</span><span class="op">(</span><span class="op">[</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"unique_dir"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">remove_tmp_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="nam">output_files_created</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">raise_exception</span><span class="op">=</span><span class="key">False</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">return_code</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t30" href="#t30">30</a></span><span class="t"><span class="str">            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t31" href="#t31">31</a></span><span class="t"><span class="str">    Examples:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t32" href="#t32">32</a></span><span class="t"><span class="str">        This is a use example of how to use the building block from Python::</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t"><span class="str">            from biobb_dna.curvesplus.canal_unzip import canal_unzip</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t"><span class="str">            prop = {</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t"><span class="str">                'type': 'series',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t"><span class="str">                'helpar_name': 'alphaC'</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t"><span class="str">            }</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t"><span class="str">            canal_unzip(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t"><span class="str">                input_zip_file='/path/to/canal/output.zip',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t"><span class="str">                output_path='/path/to/output.ser',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t"><span class="str">                output_list_path='/path/to/output.txt'</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t"><span class="str">                properties=prop)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t"><span class="str">    Info:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t"><span class="str">        * wrapped_software:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t"><span class="str">            * name: In house</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t"><span class="str">            * license: Apache-2.0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t"><span class="str">        * ontology:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t"><span class="str">            * name: EDAM</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t"><span class="str">            * schema: http://edamontology.org/EDAM.owl</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t">                 <span class="nam">output_path</span><span class="op">,</span> <span class="nam">output_list_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">properties</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t">        <span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span> <span class="key">or</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t">        <span class="com"># Call parent class constructor</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">locals_var_dict</span> <span class="op">=</span> <span class="nam">locals</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t">        <span class="com"># Input/Output files</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">io_dict</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">            <span class="str">'in'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">                <span class="str">'input_zip_file'</span><span class="op">:</span> <span class="nam">input_zip_file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">            <span class="op">}</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">            <span class="str">'out'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">                <span class="str">'output_path'</span><span class="op">:</span> <span class="nam">output_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">                <span class="str">'output_list_path'</span><span class="op">:</span> <span class="nam">output_list_path</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">        <span class="com"># Properties specific for BB</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'type'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">helpar_name</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'helpar_name'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">correlation</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">'correlation'</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="com"># Check the properties</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_properties</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">    <span class="op">@</span><span class="nam">launchlogger</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">    <span class="key">def</span> <span class="nam">launch</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">        <span class="str">"""Execute the :class:`CanalUnzip &lt;biobb_dna.curvesplus.canal_unzip.CanalUnzip>` object."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">        <span class="com"># Setup Biobb</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">check_restart</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">            <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">stage_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">        <span class="com"># Check that both properties are set</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">"Property 'type' is mandatory to run CanalUnzip. Please set it."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="com"># Check that helpar_name is set if type is series or histo</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">in</span> <span class="op">[</span><span class="str">"series"</span><span class="op">,</span> <span class="str">"histo"</span><span class="op">]</span> <span class="key">and</span> <span class="nam">self</span><span class="op">.</span><span class="nam">helpar_name</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">"Property 'helpar_name' is mandatory to run CanalUnzip with type 'series' or 'histo'. Please set it."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">        <span class="com"># Check that correlation is set if type is corr</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="op">==</span> <span class="str">"corr"</span> <span class="key">and</span> <span class="nam">self</span><span class="op">.</span><span class="nam">correlation</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">"Property 'correlation' is mandatory to run CanalUnzip with type 'corr'. Please set it."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">        <span class="nam">extensions</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">            <span class="str">"series"</span><span class="op">:</span> <span class="str">"ser"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">            <span class="str">"histo"</span><span class="op">:</span> <span class="str">"his"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">            <span class="str">"corr"</span><span class="op">:</span> <span class="str">"cor"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">        <span class="com"># Check that the type is valid</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="key">not</span> <span class="key">in</span> <span class="nam">extensions</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">            <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Type {self.type} not valid. Valid types are: {', '.join(extensions.keys())}."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">                   <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">            <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">        <span class="com"># generate sufix</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">        <span class="nam">sufix</span> <span class="op">=</span> <span class="str">""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">type</span> <span class="op">==</span> <span class="str">"corr"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">            <span class="com"># Check that the correlation is valid</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">            <span class="nam">pattern</span> <span class="op">=</span> <span class="str">r'\d+_\d+'</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">            <span class="key">if</span> <span class="key">not</span> <span class="nam">re</span><span class="op">.</span><span class="nam">match</span><span class="op">(</span><span class="nam">pattern</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">correlation</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Correlation {self.correlation} not valid. It should match the pattern &lt;number_number>."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">            <span class="nam">sufix</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">correlation</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">            <span class="com"># Check that the helpar_name is valid</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">            <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">helpar_name</span> <span class="key">not</span> <span class="key">in</span> <span class="op">[</span><span class="str">"alphaC"</span><span class="op">,</span> <span class="str">"alphaW"</span><span class="op">,</span> <span class="str">"ampC"</span><span class="op">,</span> <span class="str">"ampW"</span><span class="op">,</span> <span class="str">"ax-bend"</span><span class="op">,</span> <span class="str">"betaC"</span><span class="op">,</span> <span class="str">"betaW"</span><span class="op">,</span> <span class="str">"buckle"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">                                        <span class="str">"chiC"</span><span class="op">,</span> <span class="str">"chiW"</span><span class="op">,</span> <span class="str">"curv"</span><span class="op">,</span> <span class="str">"deltaC"</span><span class="op">,</span> <span class="str">"deltaW"</span><span class="op">,</span> <span class="str">"epsilC"</span><span class="op">,</span> <span class="str">"epsilW"</span><span class="op">,</span> <span class="str">"gammaC"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">                                        <span class="str">"gammaW"</span><span class="op">,</span> <span class="str">"h-ris"</span><span class="op">,</span> <span class="str">"h-twi"</span><span class="op">,</span> <span class="str">"inclin"</span><span class="op">,</span> <span class="str">"majd"</span><span class="op">,</span> <span class="str">"majw"</span><span class="op">,</span> <span class="str">"mind"</span><span class="op">,</span> <span class="str">"minw"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">                                        <span class="str">"opening"</span><span class="op">,</span> <span class="str">"phaseC"</span><span class="op">,</span> <span class="str">"phaseW"</span><span class="op">,</span> <span class="str">"propel"</span><span class="op">,</span> <span class="str">"reg"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">,</span> <span class="str">"shear"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">                                        <span class="str">"shift"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">,</span> <span class="str">"stagger"</span><span class="op">,</span> <span class="str">"stretch"</span><span class="op">,</span> <span class="str">"tbend"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">,</span> <span class="str">"tip"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">                                        <span class="str">"xdisp"</span><span class="op">,</span> <span class="str">"ydisp"</span><span class="op">,</span> <span class="str">"zetaC"</span><span class="op">,</span> <span class="str">"zetaW"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"Parameter {self.helpar_name} not valid. Valid parameters are: alphaC, alphaW, ampC, ampW, ax-bend, betaC, betaW, buckle, chiC, chiW, curv, deltaC, deltaW, epsilC, epsilW, gammaC, gammaW, h-ris, h-twi, inclin, majd, majw, mind, minw, opening, phaseC, phaseW, propel, reg, rise, roll, shear, shift, slide, stagger, stretch, tbend, tilt, tip, twist, xdisp, ydisp, zetaC, zetaW."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">            <span class="nam">sufix</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">helpar_name</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">        <span class="com"># Generate the filename</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">        <span class="nam">filename</span> <span class="op">=</span> <span class="str">f"canal_output_{sufix}.{extensions[self.type]}"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">        <span class="com"># Unzip the file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">        <span class="key">with</span> <span class="nam">zipfile</span><span class="op">.</span><span class="nam">ZipFile</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_zip_file"</span><span class="op">]</span><span class="op">,</span> <span class="str">'r'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">zip_ref</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">            <span class="com"># Check if the file exists in the zip file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">            <span class="key">if</span> <span class="nam">filename</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">                <span class="com"># Extract the file</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f'{filename} exists, copying into {self.stage_io_dict["out"]["output_path"]}.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">                       <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">                <span class="key">with</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">open</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span> <span class="key">as</span> <span class="nam">source</span><span class="op">,</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_path"</span><span class="op">]</span><span class="op">,</span> <span class="str">"wb"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">target</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">                    <span class="nam">shutil</span><span class="op">.</span><span class="nam">copyfileobj</span><span class="op">(</span><span class="nam">source</span><span class="op">,</span> <span class="nam">target</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">                <span class="nam">fu</span><span class="op">.</span><span class="nam">log</span><span class="op">(</span><span class="str">f"File {filename} not found in the zip file."</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">out_log</span><span class="op">,</span> <span class="nam">self</span><span class="op">.</span><span class="nam">global_log</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">                <span class="nam">exit</span><span class="op">(</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">            <span class="com"># Write the list of files</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">            <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_list_path"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">                <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_list_path"</span><span class="op">]</span><span class="op">,</span> <span class="str">"w"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">                    <span class="key">for</span> <span class="nam">name</span> <span class="key">in</span> <span class="nam">zip_ref</span><span class="op">.</span><span class="nam">namelist</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">                        <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="str">f"{name}\n"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">        <span class="com"># Run Biobb block</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">        <span class="com"># self.run_biobb()</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">        <span class="com"># Copy files to host</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">copy_to_host</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">        <span class="com"># Remove temporary file(s)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">tmp_files</span><span class="op">.</span><span class="nam">extend</span><span class="op">(</span><span class="op">[</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"unique_dir"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">        <span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">remove_tmp_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="nam">output_files_created</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">raise_exception</span><span class="op">=</span><span class="key">False</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">return_code</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t"><span class="key">def</span> <span class="nam">canal_unzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">        <span class="nam">output_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">:</span> <span class="nam">str</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">        <span class="nam">properties</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">    <span class="str">"""Create :class:`CanalUnzip &lt;biobb_dna.curvesplus.canal_unzip.CanalUnzip>` class and</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t"><span class="str">    execute the :meth:`launch() &lt;biobb_dna.curvesplus.canal_unzip.CanalUnzip.launch>` method."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">    <span class="key">return</span> <span class="nam">CanalUnzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">=</span><span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">        <span class="nam">output_path</span><span class="op">=</span><span class="nam">output_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">=</span><span class="nam">output_list_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span><span class="op">.</span><span class="nam">launch</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t"><span class="key">def</span> <span class="nam">canal_unzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">        <span class="nam">output_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">:</span> <span class="nam">str</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="nam">properties</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">    <span class="str">"""Create :class:`CanalUnzip &lt;biobb_dna.curvesplus.canal_unzip.CanalUnzip>` class and</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t"><span class="str">    execute the :meth:`launch() &lt;biobb_dna.curvesplus.canal_unzip.CanalUnzip.launch>` method."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">    <span class="key">return</span> <span class="nam">CanalUnzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">=</span><span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">        <span class="nam">output_path</span><span class="op">=</span><span class="nam">output_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">=</span><span class="nam">output_list_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span><span class="op">.</span><span class="nam">launch</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t"><span class="key">def</span> <span class="nam">main</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">    <span class="str">"""Command line execution of this building block. Please check the command line documentation."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">    <span class="nam">parser</span> <span class="op">=</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">ArgumentParser</span><span class="op">(</span><span class="nam">description</span><span class="op">=</span><span class="str">'Tool for extracting biobb_canal output files.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">                                     <span class="nam">formatter_class</span><span class="op">=</span><span class="key">lambda</span> <span class="nam">prog</span><span class="op">:</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">RawTextHelpFormatter</span><span class="op">(</span><span class="nam">prog</span><span class="op">,</span> <span class="nam">width</span><span class="op">=</span><span class="num">99999</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--config'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">help</span><span class="op">=</span><span class="str">'Configuration file'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t202" href="#t202">202</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t">    <span class="nam">required_args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument_group</span><span class="op">(</span><span class="str">'required arguments'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_zip_file'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t205" href="#t205">205</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Zip file with Canal output files. Accepted formats: zip.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t206" href="#t206">206</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t207" href="#t207">207</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Canal output file contained within input_zip_file. Accepted formats: ser, his, cor.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t208" href="#t208">208</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_list_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t209" href="#t209">209</a></span><span class="t">                        <span class="nam">help</span><span class="op">=</span><span class="str">'Text file with a list of all Canal output files contained within input_zip_file. Accepted formats: txt.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t210" href="#t210">210</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t211" href="#t211">211</a></span><span class="t">    <span class="nam">args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">parse_args</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t212" href="#t212">212</a></span><span class="t">    <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="op">=</span> <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="key">or</span> <span class="str">"{}"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t213" href="#t213">213</a></span><span class="t">    <span class="nam">properties</span> <span class="op">=</span> <span class="nam">settings</span><span class="op">.</span><span class="nam">ConfReader</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">config</span><span class="op">)</span><span class="op">.</span><span class="nam">get_prop_dic</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t214" href="#t214">214</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t215" href="#t215">215</a></span><span class="t">    <span class="nam">canal_unzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t216" href="#t216">216</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t217" href="#t217">217</a></span><span class="t">        <span class="nam">output_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t218" href="#t218">218</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_list_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t219" href="#t219">219</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t220" href="#t220">220</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t"><span class="key">def</span> <span class="nam">main</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">    <span class="str">"""Command line execution of this building block. Please check the command line documentation."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">    <span class="nam">parser</span> <span class="op">=</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">ArgumentParser</span><span class="op">(</span><span class="nam">description</span><span class="op">=</span><span class="str">'Tool for extracting biobb_canal output files.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">                                     <span class="nam">formatter_class</span><span class="op">=</span><span class="key">lambda</span> <span class="nam">prog</span><span class="op">:</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">RawTextHelpFormatter</span><span class="op">(</span><span class="nam">prog</span><span class="op">,</span> <span class="nam">width</span><span class="op">=</span><span class="num">99999</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t202" href="#t202">202</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--config'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">help</span><span class="op">=</span><span class="str">'Configuration file'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t">    <span class="nam">required_args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument_group</span><span class="op">(</span><span class="str">'required arguments'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t205" href="#t205">205</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_zip_file'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t206" href="#t206">206</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Zip file with Canal output files. Accepted formats: zip.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t207" href="#t207">207</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t208" href="#t208">208</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Canal output file contained within input_zip_file. Accepted formats: ser, his, cor.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t209" href="#t209">209</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_list_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t210" href="#t210">210</a></span><span class="t">                        <span class="nam">help</span><span class="op">=</span><span class="str">'Text file with a list of all Canal output files contained within input_zip_file. Accepted formats: txt.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t211" href="#t211">211</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t212" href="#t212">212</a></span><span class="t">    <span class="nam">args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">parse_args</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t213" href="#t213">213</a></span><span class="t">    <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="op">=</span> <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="key">or</span> <span class="str">"{}"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t214" href="#t214">214</a></span><span class="t">    <span class="nam">properties</span> <span class="op">=</span> <span class="nam">settings</span><span class="op">.</span><span class="nam">ConfReader</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">config</span><span class="op">)</span><span class="op">.</span><span class="nam">get_prop_dic</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t215" href="#t215">215</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t216" href="#t216">216</a></span><span class="t">    <span class="nam">canal_unzip</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t217" href="#t217">217</a></span><span class="t">        <span class="nam">input_zip_file</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_zip_file</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t218" href="#t218">218</a></span><span class="t">        <span class="nam">output_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t219" href="#t219">219</a></span><span class="t">        <span class="nam">output_list_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_list_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t220" href="#t220">220</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t221" href="#t221">221</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t222" href="#t222">222</a></span><span class="t"><span class="key">if</span> <span class="nam">__name__</span> <span class="op">==</span> <span class="str">'__main__'</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t223" href="#t223">223</a></span><span class="t">    <span class="nam">main</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t222" href="#t222">222</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t223" href="#t223">223</a></span><span class="t"><span class="key">if</span> <span class="nam">__name__</span> <span class="op">==</span> <span class="str">'__main__'</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t224" href="#t224">224</a></span><span class="t">    <span class="nam">main</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
 </main>
 <footer>
     <div class="content">
@@ -312,7 +313,7 @@ <h2>
             <a class="nav" href="z_3afbcd666ed82c91___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_76997f7c8cf1ed45___init___py.html b/coverage/z_76997f7c8cf1ed45___init___py.html
index 184e3870..3d8b4089 100644
--- a/coverage/z_76997f7c8cf1ed45___init___py.html
+++ b/coverage/z_76997f7c8cf1ed45___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_159731231e5c9c9d___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -83,7 +83,7 @@ <h2>
     <p class="run"><span class="n"><a id="t1" href="#t1">1</a></span><span class="t"><span class="nam">name</span> <span class="op">=</span> <span class="str">"biobb_dna"</span>&nbsp;</span><span class="r"></span></p>
     <p class="run"><span class="n"><a id="t2" href="#t2">2</a></span><span class="t"><span class="nam">__all__</span> <span class="op">=</span> <span class="op">[</span><span class="str">"dna"</span><span class="op">,</span> <span class="str">"curvesplus"</span><span class="op">,</span> <span class="str">"backbone"</span><span class="op">,</span> <span class="str">"stiffness"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t3" href="#t3">3</a></span><span class="t">           <span class="str">"interbp_correlations"</span><span class="op">,</span> <span class="str">"intrabp_correlations"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t4" href="#t4">4</a></span><span class="t"><span class="nam">__version__</span> <span class="op">=</span> <span class="str">"4.2.2"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t4" href="#t4">4</a></span><span class="t"><span class="nam">__version__</span> <span class="op">=</span> <span class="str">"4.2.3"</span>&nbsp;</span><span class="r"></span></p>
 </main>
 <footer>
     <div class="content">
@@ -93,7 +93,7 @@ <h2>
             <a class="nav" href="z_159731231e5c9c9d___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_8030ef0ea5bfd6aa_test_canal_py.html b/coverage/z_8030ef0ea5bfd6aa_test_canal_py.html
index 0c49515f..62566683 100644
--- a/coverage/z_8030ef0ea5bfd6aa_test_canal_py.html
+++ b/coverage/z_8030ef0ea5bfd6aa_test_canal_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_8030ef0ea5bfd6aa_test_canal_unzip_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -110,7 +110,7 @@ <h2>
             <a class="nav" href="z_8030ef0ea5bfd6aa_test_canal_unzip_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_8030ef0ea5bfd6aa_test_canal_unzip_py.html b/coverage/z_8030ef0ea5bfd6aa_test_canal_unzip_py.html
index 5539d581..d8ad7646 100644
--- a/coverage/z_8030ef0ea5bfd6aa_test_canal_unzip_py.html
+++ b/coverage/z_8030ef0ea5bfd6aa_test_canal_unzip_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_8030ef0ea5bfd6aa_test_canion_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -112,7 +112,7 @@ <h2>
             <a class="nav" href="z_8030ef0ea5bfd6aa_test_canion_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_8030ef0ea5bfd6aa_test_canion_py.html b/coverage/z_8030ef0ea5bfd6aa_test_canion_py.html
index d67a7954..d592bb61 100644
--- a/coverage/z_8030ef0ea5bfd6aa_test_canion_py.html
+++ b/coverage/z_8030ef0ea5bfd6aa_test_canion_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_8030ef0ea5bfd6aa_test_curves_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -110,7 +110,7 @@ <h2>
             <a class="nav" href="z_8030ef0ea5bfd6aa_test_curves_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_8030ef0ea5bfd6aa_test_curves_py.html b/coverage/z_8030ef0ea5bfd6aa_test_curves_py.html
index 00686aa9..ff730d9f 100644
--- a/coverage/z_8030ef0ea5bfd6aa_test_curves_py.html
+++ b/coverage/z_8030ef0ea5bfd6aa_test_curves_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_100f5897bddc1993_test_averages_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -112,7 +112,7 @@ <h2>
             <a class="nav" href="z_100f5897bddc1993_test_averages_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_833b0317e3c43dca___init___py.html b/coverage/z_833b0317e3c43dca___init___py.html
index 8b984304..7e9859d6 100644
--- a/coverage/z_833b0317e3c43dca___init___py.html
+++ b/coverage/z_833b0317e3c43dca___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_833b0317e3c43dca_constants_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -89,7 +89,7 @@ <h2>
             <a class="nav" href="z_833b0317e3c43dca_constants_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_833b0317e3c43dca_constants_py.html b/coverage/z_833b0317e3c43dca_constants_py.html
index 4624bcc9..9eeacfe6 100644
--- a/coverage/z_833b0317e3c43dca_constants_py.html
+++ b/coverage/z_833b0317e3c43dca_constants_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_833b0317e3c43dca_loader_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -162,7 +162,7 @@ <h2>
             <a class="nav" href="z_833b0317e3c43dca_loader_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_833b0317e3c43dca_loader_py.html b/coverage/z_833b0317e3c43dca_loader_py.html
index 1376e55d..dcdd6adb 100644
--- a/coverage/z_833b0317e3c43dca_loader_py.html
+++ b/coverage/z_833b0317e3c43dca_loader_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_833b0317e3c43dca_transform_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -133,7 +133,7 @@ <h2>
             <a class="nav" href="z_833b0317e3c43dca_transform_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_833b0317e3c43dca_transform_py.html b/coverage/z_833b0317e3c43dca_transform_py.html
index 79609226..7d0e7a0b 100644
--- a/coverage/z_833b0317e3c43dca_transform_py.html
+++ b/coverage/z_833b0317e3c43dca_transform_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="index.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -102,7 +102,7 @@ <h2>
             <a class="nav" href="index.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_8a2a7f872cf1434f___init___py.html b/coverage/z_8a2a7f872cf1434f___init___py.html
index 5948b476..1a24b71c 100644
--- a/coverage/z_8a2a7f872cf1434f___init___py.html
+++ b/coverage/z_8a2a7f872cf1434f___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_8a2a7f872cf1434f_interbpcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -94,7 +94,7 @@ <h2>
             <a class="nav" href="z_8a2a7f872cf1434f_interbpcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_8a2a7f872cf1434f_interbpcorr_py.html b/coverage/z_8a2a7f872cf1434f_interbpcorr_py.html
index 47f65cb3..4f5e4234 100644
--- a/coverage/z_8a2a7f872cf1434f_interbpcorr_py.html
+++ b/coverage/z_8a2a7f872cf1434f_interbpcorr_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_8a2a7f872cf1434f_interhpcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -419,7 +419,7 @@ <h2>
             <a class="nav" href="z_8a2a7f872cf1434f_interhpcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_8a2a7f872cf1434f_interhpcorr_py.html b/coverage/z_8a2a7f872cf1434f_interhpcorr_py.html
index 96cb96d1..a6f8f732 100644
--- a/coverage/z_8a2a7f872cf1434f_interhpcorr_py.html
+++ b/coverage/z_8a2a7f872cf1434f_interhpcorr_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_8a2a7f872cf1434f_interseqcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -115,312 +115,311 @@ <h2>
     <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t"><span class="str">            * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t"><span class="str">            * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t"><span class="str">            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t"><span class="str">            * **basepair** (*str*) - (None) Name of basepair analyzed.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t"><span class="str">    Examples:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t"><span class="str">        This is a use example of how to use the building block from Python::</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t"><span class="str">            from biobb_dna.interbp_correlations.interhpcorr import interhpcorr</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t"><span class="str">            prop = {</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t"><span class="str">                'basepair': 'AA',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t"><span class="str">            }</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t"><span class="str">            interhpcorr(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t"><span class="str">                input_filename_shift='path/to/shift.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t"><span class="str">                input_filename_slide='path/to/slide.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t"><span class="str">                input_filename_rise='path/to/rise.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t"><span class="str">                input_filename_tilt='path/to/tilt.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t"><span class="str">                input_filename_roll='path/to/roll.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t"><span class="str">                input_filename_twist='path/to/twist.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t"><span class="str">                output_csv_path='path/to/output/file.csv',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t"><span class="str">                output_jpg_path='path/to/output/file.jpg',</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t"><span class="str">                properties=prop)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t"><span class="str">    Info:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t"><span class="str">        * wrapped_software:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t"><span class="str">            * name: In house</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t"><span class="str">            * license: Apache-2.0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t"><span class="str">        * ontology:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t"><span class="str">            * name: EDAM</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t"><span class="str">            * schema: http://edamontology.org/EDAM.owl</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">            <span class="nam">self</span><span class="op">,</span> <span class="nam">input_filename_shift</span><span class="op">,</span> <span class="nam">input_filename_slide</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">            <span class="nam">input_filename_rise</span><span class="op">,</span> <span class="nam">input_filename_tilt</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="nam">input_filename_roll</span><span class="op">,</span> <span class="nam">input_filename_twist</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">            <span class="nam">output_csv_path</span><span class="op">,</span> <span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">            <span class="nam">properties</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">        <span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span> <span class="key">or</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="com"># Call parent class constructor</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">locals_var_dict</span> <span class="op">=</span> <span class="nam">locals</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="com"># Input/Output files</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">io_dict</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">            <span class="str">'in'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">                <span class="str">'input_filename_shift'</span><span class="op">:</span> <span class="nam">input_filename_shift</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">                <span class="str">'input_filename_slide'</span><span class="op">:</span> <span class="nam">input_filename_slide</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">                <span class="str">'input_filename_rise'</span><span class="op">:</span> <span class="nam">input_filename_rise</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">                <span class="str">'input_filename_tilt'</span><span class="op">:</span> <span class="nam">input_filename_tilt</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">                <span class="str">'input_filename_roll'</span><span class="op">:</span> <span class="nam">input_filename_roll</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">                <span class="str">'input_filename_twist'</span><span class="op">:</span> <span class="nam">input_filename_twist</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">            <span class="op">}</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">            <span class="str">'out'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">                <span class="str">'output_csv_path'</span><span class="op">:</span> <span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">                <span class="str">'output_jpg_path'</span><span class="op">:</span> <span class="nam">output_jpg_path</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">            <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">basepair</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"basepair"</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="com"># Check the properties</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_properties</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">    <span class="op">@</span><span class="nam">launchlogger</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">    <span class="key">def</span> <span class="nam">launch</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">        <span class="str">"""Execute the :class:`InterHelParCorrelation &lt;interbp_correlations.interhpcorr.InterHelParCorrelation>` object."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">        <span class="com"># Setup Biobb</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">check_restart</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">            <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">stage_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">        <span class="com"># read input</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">        <span class="nam">shift</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_shift"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">        <span class="nam">slide</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_slide"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">        <span class="nam">rise</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_rise"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">        <span class="nam">tilt</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_tilt"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">        <span class="nam">roll</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_roll"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">        <span class="nam">twist</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_twist"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">        <span class="com"># get basepair</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">basepair</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">basepair</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">columns</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">        <span class="com"># make matrix</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">        <span class="nam">coordinates</span> <span class="op">=</span> <span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">        <span class="nam">corr_matrix</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">            <span class="nam">np</span><span class="op">.</span><span class="nam">eye</span><span class="op">(</span><span class="num">6</span><span class="op">,</span> <span class="num">6</span><span class="op">)</span><span class="op">,</span> <span class="nam">index</span><span class="op">=</span><span class="nam">coordinates</span><span class="op">,</span> <span class="nam">columns</span><span class="op">=</span><span class="nam">coordinates</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">        <span class="com"># shift</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["slide"] = shift.corrwith(slide, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">slide</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["rise"] = shift.corrwith(rise, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">rise</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["tilt"] = shift.corrwith(tilt, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">tilt</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["roll"] = shift.corrwith(roll, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">roll</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["twist"] = shift.corrwith(twist, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["shift"] = corr_matrix["shift"]["slide"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["shift"] = corr_matrix["shift"]["rise"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["shift"] = corr_matrix["shift"]["tilt"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["shift"] = corr_matrix["shift"]["roll"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["shift"] = corr_matrix["shift"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">        <span class="com"># slide</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["rise"] = slide.corrwith(rise, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">slide</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">rise</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["tilt"] = slide.corrwith(tilt, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">slide</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">tilt</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["roll"] = slide.corrwith(roll, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">slide</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">roll</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["twist"] = slide.corrwith(twist, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">slide</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["slide"] = corr_matrix["slide"]["rise"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["slide"] = corr_matrix["slide"]["tilt"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["slide"] = corr_matrix["slide"]["roll"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["slide"] = corr_matrix["slide"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">        <span class="com"># rise</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["tilt"] = rise.corrwith(tilt, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">rise</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">tilt</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["roll"] = rise.corrwith(roll, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">rise</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">roll</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["twist"] = rise.corrwith(twist, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">rise</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["rise"] = corr_matrix["rise"]["tilt"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["rise"] = corr_matrix["rise"]["roll"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["rise"] = corr_matrix["rise"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">        <span class="com"># tilt</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["roll"] = tilt.corrwith(roll, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">tilt</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">roll</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["twist"] = tilt.corrwith(twist, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">tilt</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["tilt"] = corr_matrix["tilt"]["roll"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["tilt"] = corr_matrix["tilt"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">        <span class="com"># roll</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["twist"] = roll.corrwith(twist, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">roll</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["roll"] = corr_matrix["roll"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t202" href="#t202">202</a></span><span class="t">        <span class="com"># save csv data</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">to_csv</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_csv_path"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t205" href="#t205">205</a></span><span class="t">        <span class="com"># create heatmap</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t206" href="#t206">206</a></span><span class="t">        <span class="nam">fig</span><span class="op">,</span> <span class="nam">axs</span> <span class="op">=</span> <span class="nam">plt</span><span class="op">.</span><span class="nam">subplots</span><span class="op">(</span><span class="num">1</span><span class="op">,</span> <span class="num">1</span><span class="op">,</span> <span class="nam">dpi</span><span class="op">=</span><span class="num">300</span><span class="op">,</span> <span class="nam">tight_layout</span><span class="op">=</span><span class="key">True</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t207" href="#t207">207</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">pcolor</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t208" href="#t208">208</a></span><span class="t">        <span class="com"># Loop over data dimensions and create text annotations.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t209" href="#t209">209</a></span><span class="t">        <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t210" href="#t210">210</a></span><span class="t">            <span class="key">for</span> <span class="nam">j</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t211" href="#t211">211</a></span><span class="t">                <span class="nam">axs</span><span class="op">.</span><span class="nam">text</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t212" href="#t212">212</a></span><span class="t">                    <span class="nam">j</span><span class="op">+</span><span class="num">.5</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t213" href="#t213">213</a></span><span class="t">                    <span class="nam">i</span><span class="op">+</span><span class="num">.5</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t214" href="#t214">214</a></span><span class="t">                    <span class="str">f"{corr_matrix[coordinates[j]].loc[coordinates[i]]:.2f}"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t215" href="#t215">215</a></span><span class="t">                    <span class="nam">ha</span><span class="op">=</span><span class="str">"center"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t216" href="#t216">216</a></span><span class="t">                    <span class="nam">va</span><span class="op">=</span><span class="str">"center"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t217" href="#t217">217</a></span><span class="t">                    <span class="nam">color</span><span class="op">=</span><span class="str">"w"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t218" href="#t218">218</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_xticks</span><span class="op">(</span><span class="op">[</span><span class="nam">i</span> <span class="op">+</span> <span class="num">0.5</span> <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t219" href="#t219">219</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_xticklabels</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">columns</span><span class="op">,</span> <span class="nam">rotation</span><span class="op">=</span><span class="num">90</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t220" href="#t220">220</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_yticks</span><span class="op">(</span><span class="op">[</span><span class="nam">i</span><span class="op">+</span><span class="num">0.5</span> <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t221" href="#t221">221</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_yticklabels</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">index</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t222" href="#t222">222</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_title</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t223" href="#t223">223</a></span><span class="t">            <span class="str">"Helical Parameter Correlation "</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t224" href="#t224">224</a></span><span class="t">            <span class="str">f"for Base Pair Step \'{self.basepair}\'"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t225" href="#t225">225</a></span><span class="t">        <span class="nam">fig</span><span class="op">.</span><span class="nam">tight_layout</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t226" href="#t226">226</a></span><span class="t">        <span class="nam">fig</span><span class="op">.</span><span class="nam">savefig</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t227" href="#t227">227</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">'out'</span><span class="op">]</span><span class="op">[</span><span class="str">'output_jpg_path'</span><span class="op">]</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t228" href="#t228">228</a></span><span class="t">            <span class="nam">format</span><span class="op">=</span><span class="str">"jpg"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t229" href="#t229">229</a></span><span class="t">        <span class="nam">plt</span><span class="op">.</span><span class="nam">close</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t230" href="#t230">230</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t231" href="#t231">231</a></span><span class="t">        <span class="com"># Copy files to host</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t232" href="#t232">232</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">copy_to_host</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t233" href="#t233">233</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t234" href="#t234">234</a></span><span class="t">        <span class="com"># Remove temporary file(s)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t235" href="#t235">235</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">tmp_files</span><span class="op">.</span><span class="nam">extend</span><span class="op">(</span><span class="op">[</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t236" href="#t236">236</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"unique_dir"</span><span class="op">)</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t237" href="#t237">237</a></span><span class="t">        <span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t238" href="#t238">238</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">remove_tmp_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t239" href="#t239">239</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t240" href="#t240">240</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="nam">output_files_created</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">raise_exception</span><span class="op">=</span><span class="key">False</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t241" href="#t241">241</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t242" href="#t242">242</a></span><span class="t">        <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t243" href="#t243">243</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t244" href="#t244">244</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_corr_method</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">corrtype1</span><span class="op">,</span> <span class="nam">corrtype2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t245" href="#t245">245</a></span><span class="t">        <span class="key">if</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"circular"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"linear"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t246" href="#t246">246</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t247" href="#t247">247</a></span><span class="t">        <span class="key">if</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"linear"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"circular"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t248" href="#t248">248</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t249" href="#t249">249</a></span><span class="t">        <span class="key">elif</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"circular"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"circular"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t250" href="#t250">250</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circular</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t251" href="#t251">251</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t252" href="#t252">252</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="str">"pearson"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t253" href="#t253">253</a></span><span class="t">        <span class="key">return</span> <span class="nam">method</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t254" href="#t254">254</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t255" href="#t255">255</a></span><span class="t">    <span class="op">@</span><span class="nam">staticmethod</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t256" href="#t256">256</a></span><span class="t">    <span class="key">def</span> <span class="nam">circular</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t257" href="#t257">257</a></span><span class="t">        <span class="nam">x1</span> <span class="op">=</span> <span class="nam">x1</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t258" href="#t258">258</a></span><span class="t">        <span class="nam">x2</span> <span class="op">=</span> <span class="nam">x2</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t259" href="#t259">259</a></span><span class="t">        <span class="nam">diff_1</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x1</span> <span class="op">-</span> <span class="nam">x1</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t260" href="#t260">260</a></span><span class="t">        <span class="nam">diff_2</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span> <span class="op">-</span> <span class="nam">x2</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t261" href="#t261">261</a></span><span class="t">        <span class="nam">num</span> <span class="op">=</span> <span class="op">(</span><span class="nam">diff_1</span> <span class="op">*</span> <span class="nam">diff_2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t262" href="#t262">262</a></span><span class="t">        <span class="nam">den</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sqrt</span><span class="op">(</span><span class="op">(</span><span class="nam">diff_1</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span> <span class="op">*</span> <span class="op">(</span><span class="nam">diff_2</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t263" href="#t263">263</a></span><span class="t">        <span class="key">return</span> <span class="nam">num</span> <span class="op">/</span> <span class="nam">den</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t264" href="#t264">264</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t265" href="#t265">265</a></span><span class="t">    <span class="op">@</span><span class="nam">staticmethod</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t266" href="#t266">266</a></span><span class="t">    <span class="key">def</span> <span class="nam">circlineal</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t267" href="#t267">267</a></span><span class="t">        <span class="nam">x2</span> <span class="op">=</span> <span class="nam">x2</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t268" href="#t268">268</a></span><span class="t">        <span class="nam">rc</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">cos</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t269" href="#t269">269</a></span><span class="t">        <span class="nam">rs</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t270" href="#t270">270</a></span><span class="t">        <span class="nam">rcs</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">cos</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t271" href="#t271">271</a></span><span class="t">        <span class="nam">num</span> <span class="op">=</span> <span class="op">(</span><span class="nam">rc</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span> <span class="op">+</span> <span class="op">(</span><span class="nam">rs</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span> <span class="op">-</span> <span class="num">2</span> <span class="op">*</span> <span class="nam">rc</span> <span class="op">*</span> <span class="nam">rs</span> <span class="op">*</span> <span class="nam">rcs</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t272" href="#t272">272</a></span><span class="t">        <span class="nam">den</span> <span class="op">=</span> <span class="num">1</span> <span class="op">-</span> <span class="op">(</span><span class="nam">rcs</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t273" href="#t273">273</a></span><span class="t">        <span class="nam">correlation</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sqrt</span><span class="op">(</span><span class="nam">num</span> <span class="op">/</span> <span class="nam">den</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t274" href="#t274">274</a></span><span class="t">        <span class="key">if</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span> <span class="op">&lt;</span> <span class="num">0</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t275" href="#t275">275</a></span><span class="t">            <span class="nam">correlation</span> <span class="op">*=</span> <span class="op">-</span><span class="num">1</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t276" href="#t276">276</a></span><span class="t">        <span class="key">return</span> <span class="nam">correlation</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t"><span class="str">    Examples:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t"><span class="str">        This is a use example of how to use the building block from Python::</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t"><span class="str">            from biobb_dna.interbp_correlations.interhpcorr import interhpcorr</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t"><span class="str">            prop = {</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t"><span class="str">                'basepair': 'AA',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t"><span class="str">            }</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t"><span class="str">            interhpcorr(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t"><span class="str">                input_filename_shift='path/to/shift.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t"><span class="str">                input_filename_slide='path/to/slide.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t"><span class="str">                input_filename_rise='path/to/rise.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t"><span class="str">                input_filename_tilt='path/to/tilt.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t"><span class="str">                input_filename_roll='path/to/roll.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t"><span class="str">                input_filename_twist='path/to/twist.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t"><span class="str">                output_csv_path='path/to/output/file.csv',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t"><span class="str">                output_jpg_path='path/to/output/file.jpg',</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t"><span class="str">                properties=prop)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t"><span class="str">    Info:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t"><span class="str">        * wrapped_software:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t"><span class="str">            * name: In house</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t"><span class="str">            * license: Apache-2.0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t"><span class="str">        * ontology:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t"><span class="str">            * name: EDAM</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t"><span class="str">            * schema: http://edamontology.org/EDAM.owl</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">            <span class="nam">self</span><span class="op">,</span> <span class="nam">input_filename_shift</span><span class="op">,</span> <span class="nam">input_filename_slide</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">            <span class="nam">input_filename_rise</span><span class="op">,</span> <span class="nam">input_filename_tilt</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">            <span class="nam">input_filename_roll</span><span class="op">,</span> <span class="nam">input_filename_twist</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="nam">output_csv_path</span><span class="op">,</span> <span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">            <span class="nam">properties</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">        <span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span> <span class="key">or</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">        <span class="com"># Call parent class constructor</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">locals_var_dict</span> <span class="op">=</span> <span class="nam">locals</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">        <span class="com"># Input/Output files</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">io_dict</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">            <span class="str">'in'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">                <span class="str">'input_filename_shift'</span><span class="op">:</span> <span class="nam">input_filename_shift</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">                <span class="str">'input_filename_slide'</span><span class="op">:</span> <span class="nam">input_filename_slide</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">                <span class="str">'input_filename_rise'</span><span class="op">:</span> <span class="nam">input_filename_rise</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">                <span class="str">'input_filename_tilt'</span><span class="op">:</span> <span class="nam">input_filename_tilt</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">                <span class="str">'input_filename_roll'</span><span class="op">:</span> <span class="nam">input_filename_roll</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">                <span class="str">'input_filename_twist'</span><span class="op">:</span> <span class="nam">input_filename_twist</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">            <span class="op">}</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">            <span class="str">'out'</span><span class="op">:</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">                <span class="str">'output_csv_path'</span><span class="op">:</span> <span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">                <span class="str">'output_jpg_path'</span><span class="op">:</span> <span class="nam">output_jpg_path</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">            <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">properties</span> <span class="op">=</span> <span class="nam">properties</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">basepair</span> <span class="op">=</span> <span class="nam">properties</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"basepair"</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">        <span class="com"># Check the properties</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_properties</span><span class="op">(</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">    <span class="op">@</span><span class="nam">launchlogger</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">    <span class="key">def</span> <span class="nam">launch</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">        <span class="str">"""Execute the :class:`InterHelParCorrelation &lt;interbp_correlations.interhpcorr.InterHelParCorrelation>` object."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">        <span class="com"># Setup Biobb</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">check_restart</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">            <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">stage_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">        <span class="com"># read input</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">        <span class="nam">shift</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_shift"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">        <span class="nam">slide</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_slide"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">        <span class="nam">rise</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_rise"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">        <span class="nam">tilt</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_tilt"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">        <span class="nam">roll</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_roll"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">        <span class="nam">twist</span> <span class="op">=</span> <span class="nam">load_data</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"in"</span><span class="op">]</span><span class="op">[</span><span class="str">"input_filename_twist"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">        <span class="com"># get basepair</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">basepair</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">basepair</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">columns</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">        <span class="com"># make matrix</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">        <span class="nam">coordinates</span> <span class="op">=</span> <span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">        <span class="nam">corr_matrix</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">            <span class="nam">np</span><span class="op">.</span><span class="nam">eye</span><span class="op">(</span><span class="num">6</span><span class="op">,</span> <span class="num">6</span><span class="op">)</span><span class="op">,</span> <span class="nam">index</span><span class="op">=</span><span class="nam">coordinates</span><span class="op">,</span> <span class="nam">columns</span><span class="op">=</span><span class="nam">coordinates</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">        <span class="com"># shift</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["slide"] = shift.corrwith(slide, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">slide</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["rise"] = shift.corrwith(rise, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">rise</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["tilt"] = shift.corrwith(tilt, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">tilt</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["roll"] = shift.corrwith(roll, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">roll</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">        <span class="com"># corr_matrix["shift"]["twist"] = shift.corrwith(twist, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">shift</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["shift"] = corr_matrix["shift"]["slide"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["shift"] = corr_matrix["shift"]["rise"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["shift"] = corr_matrix["shift"]["tilt"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["shift"] = corr_matrix["shift"]["roll"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["shift"] = corr_matrix["shift"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"shift"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"shift"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">        <span class="com"># slide</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["rise"] = slide.corrwith(rise, method="pearson")</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">slide</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">rise</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="str">"pearson"</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["tilt"] = slide.corrwith(tilt, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">slide</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">tilt</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["roll"] = slide.corrwith(roll, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">slide</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">roll</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">        <span class="com"># corr_matrix["slide"]["twist"] = slide.corrwith(twist, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">slide</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["slide"] = corr_matrix["slide"]["rise"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["slide"] = corr_matrix["slide"]["tilt"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["slide"] = corr_matrix["slide"]["roll"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["slide"] = corr_matrix["slide"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"slide"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"slide"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">        <span class="com"># rise</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["tilt"] = rise.corrwith(tilt, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">rise</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">tilt</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["roll"] = rise.corrwith(roll, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">rise</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">roll</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="com"># corr_matrix["rise"]["twist"] = rise.corrwith(twist, method=self.circlineal)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">rise</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["rise"] = corr_matrix["rise"]["tilt"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["rise"] = corr_matrix["rise"]["roll"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["rise"] = corr_matrix["rise"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"rise"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"rise"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">        <span class="com"># tilt</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["roll"] = tilt.corrwith(roll, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">tilt</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">roll</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="com"># corr_matrix["tilt"]["twist"] = tilt.corrwith(twist, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">tilt</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["tilt"] = corr_matrix["tilt"]["roll"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["tilt"] = corr_matrix["tilt"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"tilt"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"tilt"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">        <span class="com"># roll</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">        <span class="com"># corr_matrix["roll"]["twist"] = roll.corrwith(twist, method=self.circular)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">roll</span><span class="op">.</span><span class="nam">corrwith</span><span class="op">(</span><span class="nam">twist</span><span class="op">,</span> <span class="nam">method</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">circular</span><span class="op">)</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">        <span class="com"># symmetric values</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">        <span class="com"># corr_matrix["twist"]["roll"] = corr_matrix["roll"]["twist"]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"roll"</span><span class="op">,</span> <span class="str">"twist"</span><span class="op">]</span> <span class="op">=</span> <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="str">"twist"</span><span class="op">,</span> <span class="str">"roll"</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">        <span class="com"># save csv data</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t202" href="#t202">202</a></span><span class="t">        <span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">to_csv</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">"out"</span><span class="op">]</span><span class="op">[</span><span class="str">"output_csv_path"</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t">        <span class="com"># create heatmap</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t205" href="#t205">205</a></span><span class="t">        <span class="nam">fig</span><span class="op">,</span> <span class="nam">axs</span> <span class="op">=</span> <span class="nam">plt</span><span class="op">.</span><span class="nam">subplots</span><span class="op">(</span><span class="num">1</span><span class="op">,</span> <span class="num">1</span><span class="op">,</span> <span class="nam">dpi</span><span class="op">=</span><span class="num">300</span><span class="op">,</span> <span class="nam">tight_layout</span><span class="op">=</span><span class="key">True</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t206" href="#t206">206</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">pcolor</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t207" href="#t207">207</a></span><span class="t">        <span class="com"># Loop over data dimensions and create text annotations.</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t208" href="#t208">208</a></span><span class="t">        <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t209" href="#t209">209</a></span><span class="t">            <span class="key">for</span> <span class="nam">j</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t210" href="#t210">210</a></span><span class="t">                <span class="nam">axs</span><span class="op">.</span><span class="nam">text</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t211" href="#t211">211</a></span><span class="t">                    <span class="nam">j</span><span class="op">+</span><span class="num">.5</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t212" href="#t212">212</a></span><span class="t">                    <span class="nam">i</span><span class="op">+</span><span class="num">.5</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t213" href="#t213">213</a></span><span class="t">                    <span class="str">f"{corr_matrix[coordinates[j]].loc[coordinates[i]]:.2f}"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t214" href="#t214">214</a></span><span class="t">                    <span class="nam">ha</span><span class="op">=</span><span class="str">"center"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t215" href="#t215">215</a></span><span class="t">                    <span class="nam">va</span><span class="op">=</span><span class="str">"center"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t216" href="#t216">216</a></span><span class="t">                    <span class="nam">color</span><span class="op">=</span><span class="str">"w"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t217" href="#t217">217</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_xticks</span><span class="op">(</span><span class="op">[</span><span class="nam">i</span> <span class="op">+</span> <span class="num">0.5</span> <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t218" href="#t218">218</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_xticklabels</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">columns</span><span class="op">,</span> <span class="nam">rotation</span><span class="op">=</span><span class="num">90</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t219" href="#t219">219</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_yticks</span><span class="op">(</span><span class="op">[</span><span class="nam">i</span><span class="op">+</span><span class="num">0.5</span> <span class="key">for</span> <span class="nam">i</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">)</span><span class="op">)</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t220" href="#t220">220</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_yticklabels</span><span class="op">(</span><span class="nam">corr_matrix</span><span class="op">.</span><span class="nam">index</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t221" href="#t221">221</a></span><span class="t">        <span class="nam">axs</span><span class="op">.</span><span class="nam">set_title</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t222" href="#t222">222</a></span><span class="t">            <span class="str">"Helical Parameter Correlation "</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t223" href="#t223">223</a></span><span class="t">            <span class="str">f"for Base Pair Step \'{self.basepair}\'"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t224" href="#t224">224</a></span><span class="t">        <span class="nam">fig</span><span class="op">.</span><span class="nam">tight_layout</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t225" href="#t225">225</a></span><span class="t">        <span class="nam">fig</span><span class="op">.</span><span class="nam">savefig</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t226" href="#t226">226</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">[</span><span class="str">'out'</span><span class="op">]</span><span class="op">[</span><span class="str">'output_jpg_path'</span><span class="op">]</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t227" href="#t227">227</a></span><span class="t">            <span class="nam">format</span><span class="op">=</span><span class="str">"jpg"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t228" href="#t228">228</a></span><span class="t">        <span class="nam">plt</span><span class="op">.</span><span class="nam">close</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t229" href="#t229">229</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t230" href="#t230">230</a></span><span class="t">        <span class="com"># Copy files to host</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t231" href="#t231">231</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">copy_to_host</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t232" href="#t232">232</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t233" href="#t233">233</a></span><span class="t">        <span class="com"># Remove temporary file(s)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t234" href="#t234">234</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">tmp_files</span><span class="op">.</span><span class="nam">extend</span><span class="op">(</span><span class="op">[</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t235" href="#t235">235</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">stage_io_dict</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="str">"unique_dir"</span><span class="op">)</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t236" href="#t236">236</a></span><span class="t">        <span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t237" href="#t237">237</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">remove_tmp_files</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t238" href="#t238">238</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t239" href="#t239">239</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">check_arguments</span><span class="op">(</span><span class="nam">output_files_created</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">raise_exception</span><span class="op">=</span><span class="key">False</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t240" href="#t240">240</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t241" href="#t241">241</a></span><span class="t">        <span class="key">return</span> <span class="num">0</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t242" href="#t242">242</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t243" href="#t243">243</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_corr_method</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">corrtype1</span><span class="op">,</span> <span class="nam">corrtype2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t244" href="#t244">244</a></span><span class="t">        <span class="key">if</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"circular"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"linear"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t245" href="#t245">245</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t246" href="#t246">246</a></span><span class="t">        <span class="key">if</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"linear"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"circular"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t247" href="#t247">247</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circlineal</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t248" href="#t248">248</a></span><span class="t">        <span class="key">elif</span> <span class="nam">corrtype1</span> <span class="op">==</span> <span class="str">"circular"</span> <span class="key">and</span> <span class="nam">corrtype2</span> <span class="op">==</span> <span class="str">"circular"</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t249" href="#t249">249</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">circular</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t250" href="#t250">250</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t251" href="#t251">251</a></span><span class="t">            <span class="nam">method</span> <span class="op">=</span> <span class="str">"pearson"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t252" href="#t252">252</a></span><span class="t">        <span class="key">return</span> <span class="nam">method</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t253" href="#t253">253</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t254" href="#t254">254</a></span><span class="t">    <span class="op">@</span><span class="nam">staticmethod</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t255" href="#t255">255</a></span><span class="t">    <span class="key">def</span> <span class="nam">circular</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t256" href="#t256">256</a></span><span class="t">        <span class="nam">x1</span> <span class="op">=</span> <span class="nam">x1</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t257" href="#t257">257</a></span><span class="t">        <span class="nam">x2</span> <span class="op">=</span> <span class="nam">x2</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t258" href="#t258">258</a></span><span class="t">        <span class="nam">diff_1</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x1</span> <span class="op">-</span> <span class="nam">x1</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t259" href="#t259">259</a></span><span class="t">        <span class="nam">diff_2</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span> <span class="op">-</span> <span class="nam">x2</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t260" href="#t260">260</a></span><span class="t">        <span class="nam">num</span> <span class="op">=</span> <span class="op">(</span><span class="nam">diff_1</span> <span class="op">*</span> <span class="nam">diff_2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t261" href="#t261">261</a></span><span class="t">        <span class="nam">den</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sqrt</span><span class="op">(</span><span class="op">(</span><span class="nam">diff_1</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span> <span class="op">*</span> <span class="op">(</span><span class="nam">diff_2</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span><span class="op">.</span><span class="nam">sum</span><span class="op">(</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t262" href="#t262">262</a></span><span class="t">        <span class="key">return</span> <span class="nam">num</span> <span class="op">/</span> <span class="nam">den</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t263" href="#t263">263</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t264" href="#t264">264</a></span><span class="t">    <span class="op">@</span><span class="nam">staticmethod</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t265" href="#t265">265</a></span><span class="t">    <span class="key">def</span> <span class="nam">circlineal</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t266" href="#t266">266</a></span><span class="t">        <span class="nam">x2</span> <span class="op">=</span> <span class="nam">x2</span> <span class="op">*</span> <span class="nam">np</span><span class="op">.</span><span class="nam">pi</span> <span class="op">/</span> <span class="num">180</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t267" href="#t267">267</a></span><span class="t">        <span class="nam">rc</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">cos</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t268" href="#t268">268</a></span><span class="t">        <span class="nam">rs</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t269" href="#t269">269</a></span><span class="t">        <span class="nam">rcs</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">sin</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">,</span> <span class="nam">np</span><span class="op">.</span><span class="nam">cos</span><span class="op">(</span><span class="nam">x2</span><span class="op">)</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t270" href="#t270">270</a></span><span class="t">        <span class="nam">num</span> <span class="op">=</span> <span class="op">(</span><span class="nam">rc</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span> <span class="op">+</span> <span class="op">(</span><span class="nam">rs</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span> <span class="op">-</span> <span class="num">2</span> <span class="op">*</span> <span class="nam">rc</span> <span class="op">*</span> <span class="nam">rs</span> <span class="op">*</span> <span class="nam">rcs</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t271" href="#t271">271</a></span><span class="t">        <span class="nam">den</span> <span class="op">=</span> <span class="num">1</span> <span class="op">-</span> <span class="op">(</span><span class="nam">rcs</span> <span class="op">**</span> <span class="num">2</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t272" href="#t272">272</a></span><span class="t">        <span class="nam">correlation</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">sqrt</span><span class="op">(</span><span class="nam">num</span> <span class="op">/</span> <span class="nam">den</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t273" href="#t273">273</a></span><span class="t">        <span class="key">if</span> <span class="nam">np</span><span class="op">.</span><span class="nam">corrcoef</span><span class="op">(</span><span class="nam">x1</span><span class="op">,</span> <span class="nam">x2</span><span class="op">)</span><span class="op">[</span><span class="num">1</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span> <span class="op">&lt;</span> <span class="num">0</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t274" href="#t274">274</a></span><span class="t">            <span class="nam">correlation</span> <span class="op">*=</span> <span class="op">-</span><span class="num">1</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t275" href="#t275">275</a></span><span class="t">        <span class="key">return</span> <span class="nam">correlation</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t276" href="#t276">276</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t277" href="#t277">277</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t278" href="#t278">278</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t279" href="#t279">279</a></span><span class="t"><span class="key">def</span> <span class="nam">interhpcorr</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t280" href="#t280">280</a></span><span class="t">        <span class="nam">input_filename_shift</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_slide</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t281" href="#t281">281</a></span><span class="t">        <span class="nam">input_filename_rise</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_tilt</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t282" href="#t282">282</a></span><span class="t">        <span class="nam">input_filename_roll</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_twist</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t283" href="#t283">283</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">output_jpg_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t284" href="#t284">284</a></span><span class="t">        <span class="nam">properties</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t285" href="#t285">285</a></span><span class="t">    <span class="str">"""Create :class:`InterHelParCorrelation &lt;interbp_correlations.interhpcorr.InterHelParCorrelation>` class and</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t286" href="#t286">286</a></span><span class="t"><span class="str">    execute the :meth:`launch() &lt;interbp_correlations.interhpcorr.InterHelParCorrelation.launch>` method."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t287" href="#t287">287</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t288" href="#t288">288</a></span><span class="t">    <span class="key">return</span> <span class="nam">InterHelParCorrelation</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t289" href="#t289">289</a></span><span class="t">        <span class="nam">input_filename_shift</span><span class="op">=</span><span class="nam">input_filename_shift</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t290" href="#t290">290</a></span><span class="t">        <span class="nam">input_filename_slide</span><span class="op">=</span><span class="nam">input_filename_slide</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t291" href="#t291">291</a></span><span class="t">        <span class="nam">input_filename_rise</span><span class="op">=</span><span class="nam">input_filename_rise</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t292" href="#t292">292</a></span><span class="t">        <span class="nam">input_filename_tilt</span><span class="op">=</span><span class="nam">input_filename_tilt</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t293" href="#t293">293</a></span><span class="t">        <span class="nam">input_filename_roll</span><span class="op">=</span><span class="nam">input_filename_roll</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t294" href="#t294">294</a></span><span class="t">        <span class="nam">input_filename_twist</span><span class="op">=</span><span class="nam">input_filename_twist</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t295" href="#t295">295</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">=</span><span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t296" href="#t296">296</a></span><span class="t">        <span class="nam">output_jpg_path</span><span class="op">=</span><span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t297" href="#t297">297</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span><span class="op">.</span><span class="nam">launch</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t278" href="#t278">278</a></span><span class="t"><span class="key">def</span> <span class="nam">interhpcorr</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t279" href="#t279">279</a></span><span class="t">        <span class="nam">input_filename_shift</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_slide</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t280" href="#t280">280</a></span><span class="t">        <span class="nam">input_filename_rise</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_tilt</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t281" href="#t281">281</a></span><span class="t">        <span class="nam">input_filename_roll</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">input_filename_twist</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t282" href="#t282">282</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">output_jpg_path</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t283" href="#t283">283</a></span><span class="t">        <span class="nam">properties</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span> <span class="op">-></span> <span class="nam">int</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t284" href="#t284">284</a></span><span class="t">    <span class="str">"""Create :class:`InterHelParCorrelation &lt;interbp_correlations.interhpcorr.InterHelParCorrelation>` class and</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t285" href="#t285">285</a></span><span class="t"><span class="str">    execute the :meth:`launch() &lt;interbp_correlations.interhpcorr.InterHelParCorrelation.launch>` method."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t286" href="#t286">286</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t287" href="#t287">287</a></span><span class="t">    <span class="key">return</span> <span class="nam">InterHelParCorrelation</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t288" href="#t288">288</a></span><span class="t">        <span class="nam">input_filename_shift</span><span class="op">=</span><span class="nam">input_filename_shift</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t289" href="#t289">289</a></span><span class="t">        <span class="nam">input_filename_slide</span><span class="op">=</span><span class="nam">input_filename_slide</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t290" href="#t290">290</a></span><span class="t">        <span class="nam">input_filename_rise</span><span class="op">=</span><span class="nam">input_filename_rise</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t291" href="#t291">291</a></span><span class="t">        <span class="nam">input_filename_tilt</span><span class="op">=</span><span class="nam">input_filename_tilt</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t292" href="#t292">292</a></span><span class="t">        <span class="nam">input_filename_roll</span><span class="op">=</span><span class="nam">input_filename_roll</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t293" href="#t293">293</a></span><span class="t">        <span class="nam">input_filename_twist</span><span class="op">=</span><span class="nam">input_filename_twist</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t294" href="#t294">294</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">=</span><span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t295" href="#t295">295</a></span><span class="t">        <span class="nam">output_jpg_path</span><span class="op">=</span><span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t296" href="#t296">296</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">,</span> <span class="op">**</span><span class="nam">kwargs</span><span class="op">)</span><span class="op">.</span><span class="nam">launch</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t297" href="#t297">297</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t298" href="#t298">298</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t299" href="#t299">299</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t300" href="#t300">300</a></span><span class="t"><span class="key">def</span> <span class="nam">main</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t301" href="#t301">301</a></span><span class="t">    <span class="str">"""Command line execution of this building block. Please check the command line documentation."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t302" href="#t302">302</a></span><span class="t">    <span class="nam">parser</span> <span class="op">=</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">ArgumentParser</span><span class="op">(</span><span class="nam">description</span><span class="op">=</span><span class="str">'Load helical parameter file and save base data individually.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t303" href="#t303">303</a></span><span class="t">                                     <span class="nam">formatter_class</span><span class="op">=</span><span class="key">lambda</span> <span class="nam">prog</span><span class="op">:</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">RawTextHelpFormatter</span><span class="op">(</span><span class="nam">prog</span><span class="op">,</span> <span class="nam">width</span><span class="op">=</span><span class="num">99999</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t304" href="#t304">304</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--config'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">help</span><span class="op">=</span><span class="str">'Configuration file'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t305" href="#t305">305</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t306" href="#t306">306</a></span><span class="t">    <span class="nam">required_args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument_group</span><span class="op">(</span><span class="str">'required arguments'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t307" href="#t307">307</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_shift'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t308" href="#t308">308</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t309" href="#t309">309</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_slide'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t310" href="#t310">310</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t311" href="#t311">311</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_rise'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t312" href="#t312">312</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t313" href="#t313">313</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_tilt'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t314" href="#t314">314</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t315" href="#t315">315</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_roll'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t316" href="#t316">316</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t317" href="#t317">317</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_twist'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t318" href="#t318">318</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t319" href="#t319">319</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_csv_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t320" href="#t320">320</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to output file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t321" href="#t321">321</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_jpg_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t322" href="#t322">322</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to output file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t323" href="#t323">323</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t324" href="#t324">324</a></span><span class="t">    <span class="nam">args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">parse_args</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t325" href="#t325">325</a></span><span class="t">    <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="op">=</span> <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="key">or</span> <span class="str">"{}"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t326" href="#t326">326</a></span><span class="t">    <span class="nam">properties</span> <span class="op">=</span> <span class="nam">settings</span><span class="op">.</span><span class="nam">ConfReader</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">config</span><span class="op">)</span><span class="op">.</span><span class="nam">get_prop_dic</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t327" href="#t327">327</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t328" href="#t328">328</a></span><span class="t">    <span class="nam">interhpcorr</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t329" href="#t329">329</a></span><span class="t">        <span class="nam">input_filename_shift</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_shift</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t330" href="#t330">330</a></span><span class="t">        <span class="nam">input_filename_slide</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_slide</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t331" href="#t331">331</a></span><span class="t">        <span class="nam">input_filename_rise</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_rise</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t332" href="#t332">332</a></span><span class="t">        <span class="nam">input_filename_tilt</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_tilt</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t333" href="#t333">333</a></span><span class="t">        <span class="nam">input_filename_roll</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_roll</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t334" href="#t334">334</a></span><span class="t">        <span class="nam">input_filename_twist</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_twist</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t335" href="#t335">335</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t336" href="#t336">336</a></span><span class="t">        <span class="nam">output_jpg_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t337" href="#t337">337</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t299" href="#t299">299</a></span><span class="t"><span class="key">def</span> <span class="nam">main</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t300" href="#t300">300</a></span><span class="t">    <span class="str">"""Command line execution of this building block. Please check the command line documentation."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t301" href="#t301">301</a></span><span class="t">    <span class="nam">parser</span> <span class="op">=</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">ArgumentParser</span><span class="op">(</span><span class="nam">description</span><span class="op">=</span><span class="str">'Load helical parameter file and save base data individually.'</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t302" href="#t302">302</a></span><span class="t">                                     <span class="nam">formatter_class</span><span class="op">=</span><span class="key">lambda</span> <span class="nam">prog</span><span class="op">:</span> <span class="nam">argparse</span><span class="op">.</span><span class="nam">RawTextHelpFormatter</span><span class="op">(</span><span class="nam">prog</span><span class="op">,</span> <span class="nam">width</span><span class="op">=</span><span class="num">99999</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t303" href="#t303">303</a></span><span class="t">    <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--config'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">help</span><span class="op">=</span><span class="str">'Configuration file'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t304" href="#t304">304</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t305" href="#t305">305</a></span><span class="t">    <span class="nam">required_args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">add_argument_group</span><span class="op">(</span><span class="str">'required arguments'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t306" href="#t306">306</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_shift'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t307" href="#t307">307</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t308" href="#t308">308</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_slide'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t309" href="#t309">309</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t310" href="#t310">310</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_rise'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t311" href="#t311">311</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t312" href="#t312">312</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_tilt'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t313" href="#t313">313</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t314" href="#t314">314</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_roll'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t315" href="#t315">315</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t316" href="#t316">316</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--input_filename_twist'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t317" href="#t317">317</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to csv file with inputs. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t318" href="#t318">318</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_csv_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t319" href="#t319">319</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to output file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t320" href="#t320">320</a></span><span class="t">    <span class="nam">required_args</span><span class="op">.</span><span class="nam">add_argument</span><span class="op">(</span><span class="str">'--output_jpg_path'</span><span class="op">,</span> <span class="nam">required</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t321" href="#t321">321</a></span><span class="t">                               <span class="nam">help</span><span class="op">=</span><span class="str">'Path to output file. Accepted formats: csv.'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t322" href="#t322">322</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t323" href="#t323">323</a></span><span class="t">    <span class="nam">args</span> <span class="op">=</span> <span class="nam">parser</span><span class="op">.</span><span class="nam">parse_args</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t324" href="#t324">324</a></span><span class="t">    <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="op">=</span> <span class="nam">args</span><span class="op">.</span><span class="nam">config</span> <span class="key">or</span> <span class="str">"{}"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t325" href="#t325">325</a></span><span class="t">    <span class="nam">properties</span> <span class="op">=</span> <span class="nam">settings</span><span class="op">.</span><span class="nam">ConfReader</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">config</span><span class="op">)</span><span class="op">.</span><span class="nam">get_prop_dic</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t326" href="#t326">326</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t327" href="#t327">327</a></span><span class="t">    <span class="nam">interhpcorr</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t328" href="#t328">328</a></span><span class="t">        <span class="nam">input_filename_shift</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_shift</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t329" href="#t329">329</a></span><span class="t">        <span class="nam">input_filename_slide</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_slide</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t330" href="#t330">330</a></span><span class="t">        <span class="nam">input_filename_rise</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_rise</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t331" href="#t331">331</a></span><span class="t">        <span class="nam">input_filename_tilt</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_tilt</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t332" href="#t332">332</a></span><span class="t">        <span class="nam">input_filename_roll</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_roll</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t333" href="#t333">333</a></span><span class="t">        <span class="nam">input_filename_twist</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">input_filename_twist</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t334" href="#t334">334</a></span><span class="t">        <span class="nam">output_csv_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_csv_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t335" href="#t335">335</a></span><span class="t">        <span class="nam">output_jpg_path</span><span class="op">=</span><span class="nam">args</span><span class="op">.</span><span class="nam">output_jpg_path</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t336" href="#t336">336</a></span><span class="t">        <span class="nam">properties</span><span class="op">=</span><span class="nam">properties</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t337" href="#t337">337</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t338" href="#t338">338</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t339" href="#t339">339</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t340" href="#t340">340</a></span><span class="t"><span class="key">if</span> <span class="nam">__name__</span> <span class="op">==</span> <span class="str">'__main__'</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t341" href="#t341">341</a></span><span class="t">    <span class="nam">main</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t339" href="#t339">339</a></span><span class="t"><span class="key">if</span> <span class="nam">__name__</span> <span class="op">==</span> <span class="str">'__main__'</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t340" href="#t340">340</a></span><span class="t">    <span class="nam">main</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
 </main>
 <footer>
     <div class="content">
@@ -430,7 +429,7 @@ <h2>
             <a class="nav" href="z_8a2a7f872cf1434f_interseqcorr_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_8a2a7f872cf1434f_interseqcorr_py.html b/coverage/z_8a2a7f872cf1434f_interseqcorr_py.html
index bd98b89b..ca5e66aa 100644
--- a/coverage/z_8a2a7f872cf1434f_interseqcorr_py.html
+++ b/coverage/z_8a2a7f872cf1434f_interseqcorr_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_64e03be4370b7ecc___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -328,7 +328,7 @@ <h2>
             <a class="nav" href="z_64e03be4370b7ecc___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_957b841f7413f0a1___init___py.html b/coverage/z_957b841f7413f0a1___init___py.html
index 9af28f7d..a1ad4a94 100644
--- a/coverage/z_957b841f7413f0a1___init___py.html
+++ b/coverage/z_957b841f7413f0a1___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_020f76a90aa51c7b_test_bipopulations_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -89,7 +89,7 @@ <h2>
             <a class="nav" href="z_020f76a90aa51c7b_test_bipopulations_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_97f47455ed834d2d_test_correlation_py.html b/coverage/z_97f47455ed834d2d_test_correlation_py.html
index cc0e3037..09a7c355 100644
--- a/coverage/z_97f47455ed834d2d_test_correlation_py.html
+++ b/coverage/z_97f47455ed834d2d_test_correlation_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_8030ef0ea5bfd6aa_test_canal_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -207,7 +207,7 @@ <h2>
             <a class="nav" href="z_8030ef0ea5bfd6aa_test_canal_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_9de9475b0a6fab52___init___py.html b/coverage/z_9de9475b0a6fab52___init___py.html
index 74a70b10..3a904d2b 100644
--- a/coverage/z_9de9475b0a6fab52___init___py.html
+++ b/coverage/z_9de9475b0a6fab52___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_9de9475b0a6fab52_average_stiffness_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -91,7 +91,7 @@ <h2>
             <a class="nav" href="z_9de9475b0a6fab52_average_stiffness_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_9de9475b0a6fab52_average_stiffness_py.html b/coverage/z_9de9475b0a6fab52_average_stiffness_py.html
index b8f5b384..9fa381b0 100644
--- a/coverage/z_9de9475b0a6fab52_average_stiffness_py.html
+++ b/coverage/z_9de9475b0a6fab52_average_stiffness_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_9de9475b0a6fab52_basepair_stiffness_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -326,7 +326,7 @@ <h2>
             <a class="nav" href="z_9de9475b0a6fab52_basepair_stiffness_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_9de9475b0a6fab52_basepair_stiffness_py.html b/coverage/z_9de9475b0a6fab52_basepair_stiffness_py.html
index 59bf89b1..a147082c 100644
--- a/coverage/z_9de9475b0a6fab52_basepair_stiffness_py.html
+++ b/coverage/z_9de9475b0a6fab52_basepair_stiffness_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_957b841f7413f0a1___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -342,7 +342,7 @@ <h2>
             <a class="nav" href="z_957b841f7413f0a1___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/coverage/z_cda7f8e8576a7189_test_stiffness_py.html b/coverage/z_cda7f8e8576a7189_test_stiffness_py.html
index d0d04652..7567d960 100644
--- a/coverage/z_cda7f8e8576a7189_test_stiffness_py.html
+++ b/coverage/z_cda7f8e8576a7189_test_stiffness_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_833b0317e3c43dca___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -129,7 +129,7 @@ <h2>
             <a class="nav" href="z_833b0317e3c43dca___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.5.4">coverage.py v7.5.4</a>,
-            created at 2024-06-27 09:08 +0000
+            created at 2024-06-27 09:46 +0000
         </p>
     </div>
 </footer>
diff --git a/flake8/index.html b/flake8/index.html
index 2c757d4e..84b1e528 100644
--- a/flake8/index.html
+++ b/flake8/index.html
@@ -9,7 +9,7 @@
       <div id="masthead" class="sev-4"></div>
       <div id="page">
           <h1>flake8 violations</h1>
-         <p id="versions">Generated on 2024-06-27 09:06
+         <p id="versions">Generated on 2024-06-27 09:42
             with Installed plugins: flake8-html: 0.4.3, mccabe: 0.7.0, pycodestyle: 2.12.0, pyflakes: 3.2.0
          </p>
          <ul id="index">
diff --git a/junit/junit.xml b/junit/junit.xml
index d0ac79e2..9c563684 100644
--- a/junit/junit.xml
+++ b/junit/junit.xml
@@ -1 +1 @@
-<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="19" time="26.879" timestamp="2024-06-27T09:07:56.605525" hostname="biobb-runners"><testcase classname="biobb_dna.test.unitests.test_backbone.test_bipopulations.TestBIPopulations" name="test_bipopulations" time="0.492" /><testcase classname="biobb_dna.test.unitests.test_backbone.test_canonical_alpha_gamma.TestCanonicalAlphaGamma" name="test_canonicalag" time="0.448" /><testcase classname="biobb_dna.test.unitests.test_backbone.test_puckering.TestPuckering" name="test_puckering" time="0.551" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestInterHelparCorrelation" name="test_helparcorrelation" time="0.276" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestInterSequenceCorrelation" name="test_sequencecorrelation" time="0.414" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestInterBasepairCorrelation" name="test_basepaircorrelation" time="0.846" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestIntraHelparCorrelation" name="test_helparcorrelation" time="0.276" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestIntraSequenceCorrelation" name="test_sequencecorrelation" time="0.350" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestIntraBasepairCorrelation" name="test_basepaircorrelation" time="0.871" /><testcase classname="biobb_dna.test.unitests.test_curvesplus.test_canal.TestCanal" name="test_canal" time="7.223" /><testcase classname="biobb_dna.test.unitests.test_curvesplus.test_canal_unzip.TestCanalUnzip" name="test_canal_unzip" time="0.088" /><testcase classname="biobb_dna.test.unitests.test_curvesplus.test_canion.TestCanal" name="test_canion" time="0.396" /><testcase classname="biobb_dna.test.unitests.test_curvesplus.test_curves.TestCurves" name="test_curves" time="6.937" /><testcase classname="biobb_dna.test.unitests.test_dna.test_averages.TestAverages" name="test_helparaverages" time="0.241" /><testcase classname="biobb_dna.test.unitests.test_dna.test_bimodality.TestBimodality" name="test_helparbimodality" time="0.604" /><testcase classname="biobb_dna.test.unitests.test_dna.test_timeseries.TestTimeSeries" name="test_helpartimeseries" time="4.265" /><testcase classname="biobb_dna.test.unitests.test_dna.test_timeseries_unzip.TestCanalUnzip" name="test_dna_timeseries_unzip" time="0.084" /><testcase classname="biobb_dna.test.unitests.test_stiffness.test_stiffness.TestAvgStiffness" name="test_averagestiffness" time="0.251" /><testcase classname="biobb_dna.test.unitests.test_stiffness.test_stiffness.TestBasePairStiffness" name="test_basepairstiffness" time="0.319" /></testsuite></testsuites>
\ No newline at end of file
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="19" time="162.628" timestamp="2024-06-27T09:43:55.891045" hostname="biobb-runners"><testcase classname="biobb_dna.test.unitests.test_backbone.test_bipopulations.TestBIPopulations" name="test_bipopulations" time="0.513" /><testcase classname="biobb_dna.test.unitests.test_backbone.test_canonical_alpha_gamma.TestCanonicalAlphaGamma" name="test_canonicalag" time="0.476" /><testcase classname="biobb_dna.test.unitests.test_backbone.test_puckering.TestPuckering" name="test_puckering" time="0.591" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestInterHelparCorrelation" name="test_helparcorrelation" time="0.289" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestInterSequenceCorrelation" name="test_sequencecorrelation" time="0.357" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestInterBasepairCorrelation" name="test_basepaircorrelation" time="0.974" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestIntraHelparCorrelation" name="test_helparcorrelation" time="0.289" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestIntraSequenceCorrelation" name="test_sequencecorrelation" time="0.359" /><testcase classname="biobb_dna.test.unitests.test_correlation.test_correlation.TestIntraBasepairCorrelation" name="test_basepaircorrelation" time="0.910" /><testcase classname="biobb_dna.test.unitests.test_curvesplus.test_canal.TestCanal" name="test_canal" time="8.771" /><testcase classname="biobb_dna.test.unitests.test_curvesplus.test_canal_unzip.TestCanalUnzip" name="test_canal_unzip" time="0.093" /><testcase classname="biobb_dna.test.unitests.test_curvesplus.test_canion.TestCanal" name="test_canion" time="0.392" /><testcase classname="biobb_dna.test.unitests.test_curvesplus.test_curves.TestCurves" name="test_curves" time="7.722" /><testcase classname="biobb_dna.test.unitests.test_dna.test_averages.TestAverages" name="test_helparaverages" time="0.235" /><testcase classname="biobb_dna.test.unitests.test_dna.test_bimodality.TestBimodality" name="test_helparbimodality" time="0.422" /><testcase classname="biobb_dna.test.unitests.test_dna.test_timeseries.TestTimeSeries" name="test_helpartimeseries" time="4.412" /><testcase classname="biobb_dna.test.unitests.test_dna.test_timeseries_unzip.TestCanalUnzip" name="test_dna_timeseries_unzip" time="0.083" /><testcase classname="biobb_dna.test.unitests.test_stiffness.test_stiffness.TestAvgStiffness" name="test_averagestiffness" time="0.250" /><testcase classname="biobb_dna.test.unitests.test_stiffness.test_stiffness.TestBasePairStiffness" name="test_basepairstiffness" time="0.259" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/junit/report.html b/junit/report.html
index 3ece470e..e9f1cb58 100644
--- a/junit/report.html
+++ b/junit/report.html
@@ -7,7 +7,7 @@
   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 27-Jun-2024 at 09:08:23 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 27-Jun-2024 at 09:46:38 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -61,7 +61,7 @@ <h2>Environment</h2>
         <h2>Summary</h2>
         <div class="additional-summary prefix">
         </div>
-        <p class="run-count">19 tests took 00:00:25.</p>
+        <p class="run-count">19 tests took 00:00:27.</p>
         <p class="filter">(Un)check the boxes to filter the results.</p>
         <div class="summary__reload">
           <div class="summary__reload__button hidden" onclick="location.reload()">
@@ -108,7 +108,7 @@ <h2>Summary</h2>
     </table>
   </body>
   <footer>
-    <div id="data-container" data-jsonblob="{&#34;environment&#34;: {&#34;Python&#34;: &#34;3.9.19&#34;, &#34;Platform&#34;: &#34;Linux-5.4.0-159-generic-x86_64-with-glibc2.31&#34;, &#34;Packages&#34;: {&#34;pytest&#34;: &#34;8.2.2&#34;, &#34;pluggy&#34;: &#34;1.5.0&#34;}, &#34;Plugins&#34;: {&#34;metadata&#34;: &#34;3.1.1&#34;, &#34;html&#34;: &#34;4.1.1&#34;, &#34;cov&#34;: &#34;5.0.0&#34;}, &#34;CI&#34;: &#34;true&#34;}, &#34;tests&#34;: {&#34;biobb_dna/test/unitests/test_backbone/test_bipopulations.py::TestBIPopulations::test_bipopulations&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_backbone/test_bipopulations.py::TestBIPopulations::test_bipopulations&#34;, &#34;duration&#34;: &#34;492 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_backbone/test_bipopulations.py::TestBIPopulations::test_bipopulations&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;492 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:07:58,265 [MainThread  ] [INFO ]  Executing biobb_dna.backbone.bipopulations Version: 4.2.2\n2024-06-27 09:07:58,266 [MainThread  ] [INFO ]  /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e directory successfully created\n2024-06-27 09:07:58,266 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_epsilC.ser to /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e\n2024-06-27 09:07:58,267 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_epsilW.ser to /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e\n2024-06-27 09:07:58,268 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_zetaC.ser to /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e\n2024-06-27 09:07:58,269 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_zetaW.ser to /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e\n2024-06-27 09:07:58,664 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_184/bipopulations/bipop.csv\nChecking if empty file: /tmp/biobb/unitests_184/bipopulations/bipop.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_184/bipopulations/bipop.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/backbone/bipop_ref.jpg\n     IMAGE_A HASH: ff8981818181c9ff SIZE: 64 bits\n     IMAGE_B HASH: ff8981818180c9ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 1 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_184/bipopulations/bipopulations_log.out:file_utils.py:391 Executing biobb_dna.backbone.bipopulations Version: 4.2.2\nINFO     /tmp/biobb/unitests_184/bipopulations/bipopulations_log.out:file_utils.py:82 /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e directory successfully created\nINFO     /tmp/biobb/unitests_184/bipopulations/bipopulations_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_epsilC.ser to /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e\nINFO     /tmp/biobb/unitests_184/bipopulations/bipopulations_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_epsilW.ser to /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e\nINFO     /tmp/biobb/unitests_184/bipopulations/bipopulations_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_zetaC.ser to /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e\nINFO     /tmp/biobb/unitests_184/bipopulations/bipopulations_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_zetaW.ser to /tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e\nINFO     /tmp/biobb/unitests_184/bipopulations/bipopulations_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_184/bipopulations/sandbox_1290bd60-7c32-4784-b83e-219b73f7c33e&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_184\n&#34;}], &#34;biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py::TestCanonicalAlphaGamma::test_canonicalag&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py::TestCanonicalAlphaGamma::test_canonicalag&#34;, &#34;duration&#34;: &#34;448 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py::TestCanonicalAlphaGamma::test_canonicalag&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;448 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:07:58,775 [MainThread  ] [INFO ]  Executing biobb_dna.backbone.canonicalag Version: 4.2.2\n2024-06-27 09:07:58,775 [MainThread  ] [INFO ]  /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f directory successfully created\n2024-06-27 09:07:58,776 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_alphaC.ser to /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f\n2024-06-27 09:07:58,777 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_alphaW.ser to /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f\n2024-06-27 09:07:58,777 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_gammaC.ser to /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f\n2024-06-27 09:07:58,778 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_gammaW.ser to /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f\n2024-06-27 09:07:59,139 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_184/canonicalag/canonag.csv\nChecking if empty file: /tmp/biobb/unitests_184/canonicalag/canonag.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_184/canonicalag/canonag.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/backbone/canonag_ref.jpg\n     IMAGE_A HASH: ff8081818180f9ff SIZE: 64 bits\n     IMAGE_B HASH: ff8081818180f9ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_184/canonicalag/canonicalag_log.out:file_utils.py:391 Executing biobb_dna.backbone.canonicalag Version: 4.2.2\nINFO     /tmp/biobb/unitests_184/canonicalag/canonicalag_log.out:file_utils.py:82 /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f directory successfully created\nINFO     /tmp/biobb/unitests_184/canonicalag/canonicalag_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_alphaC.ser to /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f\nINFO     /tmp/biobb/unitests_184/canonicalag/canonicalag_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_alphaW.ser to /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f\nINFO     /tmp/biobb/unitests_184/canonicalag/canonicalag_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_gammaC.ser to /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f\nINFO     /tmp/biobb/unitests_184/canonicalag/canonicalag_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_gammaW.ser to /tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f\nINFO     /tmp/biobb/unitests_184/canonicalag/canonicalag_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_184/canonicalag/sandbox_60316712-2c54-4e7a-b246-9ba6491c7e0f&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_184\n&#34;}], &#34;biobb_dna/test/unitests/test_backbone/test_puckering.py::TestPuckering::test_puckering&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_backbone/test_puckering.py::TestPuckering::test_puckering&#34;, &#34;duration&#34;: &#34;551 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_backbone/test_puckering.py::TestPuckering::test_puckering&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;551 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:07:59,224 [MainThread  ] [INFO ]  Executing biobb_dna.backbone.puckering Version: 4.2.2\n2024-06-27 09:07:59,224 [MainThread  ] [INFO ]  /tmp/biobb/unitests_184/puckering/sandbox_2571c1ea-96fb-465a-9b3a-5d6a7ed953e3 directory successfully created\n2024-06-27 09:07:59,225 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_phaseC.ser to /tmp/biobb/unitests_184/puckering/sandbox_2571c1ea-96fb-465a-9b3a-5d6a7ed953e3\n2024-06-27 09:07:59,226 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_phaseW.ser to /tmp/biobb/unitests_184/puckering/sandbox_2571c1ea-96fb-465a-9b3a-5d6a7ed953e3\n2024-06-27 09:07:59,692 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_184/puckering/sandbox_2571c1ea-96fb-465a-9b3a-5d6a7ed953e3&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_184/puckering/puckering.csv\nChecking if empty file: /tmp/biobb/unitests_184/puckering/puckering.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_184/puckering/puckering.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/backbone/puckering_ref.jpg\n     IMAGE_A HASH: eb8181808081ffff SIZE: 64 bits\n     IMAGE_B HASH: eb8181808081ffff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_184/puckering/puckering_log.out:file_utils.py:391 Executing biobb_dna.backbone.puckering Version: 4.2.2\nINFO     /tmp/biobb/unitests_184/puckering/puckering_log.out:file_utils.py:82 /tmp/biobb/unitests_184/puckering/sandbox_2571c1ea-96fb-465a-9b3a-5d6a7ed953e3 directory successfully created\nINFO     /tmp/biobb/unitests_184/puckering/puckering_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_phaseC.ser to /tmp/biobb/unitests_184/puckering/sandbox_2571c1ea-96fb-465a-9b3a-5d6a7ed953e3\nINFO     /tmp/biobb/unitests_184/puckering/puckering_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_phaseW.ser to /tmp/biobb/unitests_184/puckering/sandbox_2571c1ea-96fb-465a-9b3a-5d6a7ed953e3\nINFO     /tmp/biobb/unitests_184/puckering/puckering_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_184/puckering/sandbox_2571c1ea-96fb-465a-9b3a-5d6a7ed953e3&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_184\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterHelparCorrelation::test_helparcorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterHelparCorrelation::test_helparcorrelation&#34;, &#34;duration&#34;: &#34;276 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterHelparCorrelation::test_helparcorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;276 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:07:59,778 [MainThread  ] [INFO ]  Executing biobb_dna.interbp_correlations.interhpcorr Version: 4.2.2\n2024-06-27 09:07:59,778 [MainThread  ] [INFO ]  /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099 directory successfully created\n2024-06-27 09:07:59,778 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_shift_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\n2024-06-27 09:07:59,779 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_slide_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\n2024-06-27 09:07:59,779 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_rise_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\n2024-06-27 09:07:59,779 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_tilt_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\n2024-06-27 09:07:59,779 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_roll_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\n2024-06-27 09:07:59,780 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_twist_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\n2024-06-27 09:07:59,971 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_184/interhpcorr/inter_hpcorr.csv\nChecking if empty file: /tmp/biobb/unitests_184/interhpcorr/inter_hpcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_184/interhpcorr/inter_hpcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/inter_hpcorr_ref.jpg\n     IMAGE_A HASH: ff83868890a1c0ff SIZE: 64 bits\n     IMAGE_B HASH: ff83868890a1c0ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:391 Executing biobb_dna.interbp_correlations.interhpcorr Version: 4.2.2\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:82 /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099 directory successfully created\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_shift_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_slide_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_rise_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_tilt_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_roll_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_twist_AA.csv to /tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099\nINFO     /tmp/biobb/unitests_184/interhpcorr/log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_184/interhpcorr/sandbox_4abfd62a-f517-402b-974d-dff68a9e8099&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_184\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterSequenceCorrelation::test_sequencecorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterSequenceCorrelation::test_sequencecorrelation&#34;, &#34;duration&#34;: &#34;414 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterSequenceCorrelation::test_sequencecorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;414 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:00,053 [MainThread  ] [INFO ]  Executing biobb_dna.interbp_correlations.interseqcorr Version: 4.2.2\n2024-06-27 09:08:00,053 [MainThread  ] [INFO ]  /tmp/biobb/unitests_184/interseqcorr/sandbox_c418b22e-85cc-4695-beff-8c41eeea6b64 directory successfully created\n2024-06-27 09:08:00,054 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_roll.ser to /tmp/biobb/unitests_184/interseqcorr/sandbox_c418b22e-85cc-4695-beff-8c41eeea6b64\n2024-06-27 09:08:00,383 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_184/interseqcorr/sandbox_c418b22e-85cc-4695-beff-8c41eeea6b64&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_184/interseqcorr/inter_seqcorr.csv\nChecking if empty file: /tmp/biobb/unitests_184/interseqcorr/inter_seqcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_184/interseqcorr/inter_seqcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/inter_seqcorr_roll.jpg\n     IMAGE_A HASH: ff8080889080c0ff SIZE: 64 bits\n     IMAGE_B HASH: ff8080889080c0ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_184/interseqcorr/interseqcorr_log.out:file_utils.py:391 Executing biobb_dna.interbp_correlations.interseqcorr Version: 4.2.2\nINFO     /tmp/biobb/unitests_184/interseqcorr/interseqcorr_log.out:file_utils.py:82 /tmp/biobb/unitests_184/interseqcorr/sandbox_c418b22e-85cc-4695-beff-8c41eeea6b64 directory successfully created\nINFO     /tmp/biobb/unitests_184/interseqcorr/interseqcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_roll.ser to /tmp/biobb/unitests_184/interseqcorr/sandbox_c418b22e-85cc-4695-beff-8c41eeea6b64\nINFO     /tmp/biobb/unitests_184/interseqcorr/interseqcorr_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_184/interseqcorr/sandbox_c418b22e-85cc-4695-beff-8c41eeea6b64&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_184\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterBasepairCorrelation::test_basepaircorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterBasepairCorrelation::test_basepaircorrelation&#34;, &#34;duration&#34;: &#34;846 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterBasepairCorrelation::test_basepaircorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;846 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:00,468 [MainThread  ] [INFO ]  Executing biobb_dna.interbp_correlations.interbpcorr Version: 4.2.2\n2024-06-27 09:08:00,469 [MainThread  ] [INFO ]  /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f directory successfully created\n2024-06-27 09:08:00,469 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_shift.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\n2024-06-27 09:08:00,470 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_slide.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\n2024-06-27 09:08:00,471 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_rise.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\n2024-06-27 09:08:00,472 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_tilt.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\n2024-06-27 09:08:00,473 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_roll.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\n2024-06-27 09:08:00,473 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_twist.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\n2024-06-27 09:08:01,225 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_184/interbpcorr/inter_bpcorr.csv\nChecking if empty file: /tmp/biobb/unitests_184/interbpcorr/inter_bpcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_184/interbpcorr/inter_bpcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/inter_bpcorr_ref.jpg\n     IMAGE_A HASH: fd6d6dfffd6c0183 SIZE: 64 bits\n     IMAGE_B HASH: fd6d6dfffd6c0183 SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:391 Executing biobb_dna.interbp_correlations.interbpcorr Version: 4.2.2\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:82 /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f directory successfully created\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_shift.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_slide.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_rise.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_tilt.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_roll.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_twist.ser to /tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f\nINFO     /tmp/biobb/unitests_184/interbpcorr/interbpcorr_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_184/interbpcorr/sandbox_7ae33c83-45ff-4cc9-8225-3bad77b9d82f&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_184\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraHelparCorrelation::test_helparcorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraHelparCorrelation::test_helparcorrelation&#34;, &#34;duration&#34;: &#34;276 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraHelparCorrelation::test_helparcorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;276 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:01,315 [MainThread  ] [INFO ]  Executing biobb_dna.intrabp_correlations.intrahpcorr Version: 4.2.2\n2024-06-27 09:08:01,315 [MainThread  ] [INFO ]  /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8 directory successfully created\n2024-06-27 09:08:01,316 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_shear_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\n2024-06-27 09:08:01,316 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_stretch_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\n2024-06-27 09:08:01,316 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_stagger_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\n2024-06-27 09:08:01,317 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_buckle_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\n2024-06-27 09:08:01,317 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_propel_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\n2024-06-27 09:08:01,317 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_opening_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\n2024-06-27 09:08:01,512 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_184/intrahpcorr/intra_hpcorr.csv\nChecking if empty file: /tmp/biobb/unitests_184/intrahpcorr/intra_hpcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_184/intrahpcorr/intra_hpcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/intra_hpcorr_ref.jpg\n     IMAGE_A HASH: fb81848890a0e0ff SIZE: 64 bits\n     IMAGE_B HASH: fb81848890a0e0ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:391 Executing biobb_dna.intrabp_correlations.intrahpcorr Version: 4.2.2\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:82 /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8 directory successfully created\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_shear_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_stretch_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_stagger_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_buckle_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_propel_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_opening_A.csv to /tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8\nINFO     /tmp/biobb/unitests_184/intrahpcorr/log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_184/intrahpcorr/sandbox_e6aab06e-f699-4f09-882f-de117ca456b8&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_184\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraSequenceCorrelation::test_sequencecorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraSequenceCorrelation::test_sequencecorrelation&#34;, &#34;duration&#34;: &#34;350 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraSequenceCorrelation::test_sequencecorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;350 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:01,593 [MainThread  ] [INFO ]  Executing biobb_dna.intrabp_correlations.intraseqcorr Version: 4.2.2\n2024-06-27 09:08:01,593 [MainThread  ] [INFO ]  /tmp/biobb/unitests_184/intraseqcorr/sandbox_d5914140-e5d2-4b1f-bee3-a6035af801d2 directory successfully created\n2024-06-27 09:08:01,594 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_buckle.ser to /tmp/biobb/unitests_184/intraseqcorr/sandbox_d5914140-e5d2-4b1f-bee3-a6035af801d2\n2024-06-27 09:08:01,859 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_184/intraseqcorr/sandbox_d5914140-e5d2-4b1f-bee3-a6035af801d2&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_184/intraseqcorr/intra_seqcorr.csv\nChecking if empty file: /tmp/biobb/unitests_184/intraseqcorr/intra_seqcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_184/intraseqcorr/intra_seqcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/intra_seqcorr_buckle.jpg\n     IMAGE_A HASH: ff83848890a0c0ff SIZE: 64 bits\n     IMAGE_B HASH: ff83848890a0c0ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_184/intraseqcorr/intraseqcorr_log.out:file_utils.py:391 Executing biobb_dna.intrabp_correlations.intraseqcorr Version: 4.2.2\nINFO     /tmp/biobb/unitests_184/intraseqcorr/intraseqcorr_log.out:file_utils.py:82 /tmp/biobb/unitests_184/intraseqcorr/sandbox_d5914140-e5d2-4b1f-bee3-a6035af801d2 directory successfully created\nINFO     /tmp/biobb/unitests_184/intraseqcorr/intraseqcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_buckle.ser to /tmp/biobb/unitests_184/intraseqcorr/sandbox_d5914140-e5d2-4b1f-bee3-a6035af801d2\nINFO     /tmp/biobb/unitests_184/intraseqcorr/intraseqcorr_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_184/intraseqcorr/sandbox_d5914140-e5d2-4b1f-bee3-a6035af801d2&amp;#x27;]\n\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraBasepairCorrelation::test_basepaircorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraBasepairCorrelation::test_basepaircorrelation&#34;, &#34;duration&#34;: &#34;871 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraBasepairCorrelation::test_basepaircorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;871 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:01,944 [MainThread  ] [INFO ]  Executing biobb_dna.intrabp_correlations.intrabpcorr Version: 4.2.2\n2024-06-27 09:08:01,944 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba directory successfully created\n2024-06-27 09:08:01,945 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_shear.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\n2024-06-27 09:08:01,946 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_stretch.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\n2024-06-27 09:08:01,947 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_stagger.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\n2024-06-27 09:08:01,948 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_buckle.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\n2024-06-27 09:08:01,948 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_propel.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\n2024-06-27 09:08:01,949 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_opening.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\n2024-06-27 09:08:02,727 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/intrabpcorr/intra_bpcorr.csv\nChecking if empty file: /tmp/biobb/unitests_185/intrabpcorr/intra_bpcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/intrabpcorr/intra_bpcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/intra_bpcorr_ref.jpg\n     IMAGE_A HASH: 01f5f7f7fcf40183 SIZE: 64 bits\n     IMAGE_B HASH: 01f5f7f7fcf40183 SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Executing biobb_dna.intrabp_correlations.intrabpcorr Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:82 /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba directory successfully created\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_shear.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_stretch.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_stagger.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_buckle.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_propel.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_opening.ser to /tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba\nINFO     /tmp/biobb/unitests_185/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/intrabpcorr/sandbox_c92bcf35-5262-4477-b0a5-a398b204a8ba&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_curvesplus/test_canal.py::TestCanal::test_canal&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_curvesplus/test_canal.py::TestCanal::test_canal&#34;, &#34;duration&#34;: &#34;00:00:07&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_curvesplus/test_canal.py::TestCanal::test_canal&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:07&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:02,816 [MainThread  ] [INFO ]  Executing biobb_dna.curvesplus.biobb_canal Version: 4.2.2\n2024-06-27 09:08:02,816 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/biobb_canal/sandbox_f171288b-3842-47ed-bd32-889e5871f561 directory successfully created\n2024-06-27 09:08:02,829 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/curves_output.cda to /tmp/biobb/unitests_185/biobb_canal/sandbox_f171288b-3842-47ed-bd32-889e5871f561\n2024-06-27 09:08:02,829 [MainThread  ] [INFO ]  Creating command line with instructions and required arguments\n2024-06-27 09:08:02,829 [MainThread  ] [INFO ]  Canal &amp;lt;&amp;lt;! \n&amp;amp;inp\n  lis=canal_output,\n  cormin=0.6,\n  lev1=0,lev2=0,\n  itst=0,itnd=0,itdel=1,\n  histo=.t.,\n  series=.t.,\n  corr=.t.,\n&amp;amp;end\ncurves_output.cda CGCGAATTCGCG\n!\n\n2024-06-27 09:08:09,840 [MainThread  ] [INFO ]  Exit code 0\n\n2024-06-27 09:08:09,989 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/biobb_canal/sandbox_f171288b-3842-47ed-bd32-889e5871f561&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/biobb_canal/canal_output.zip\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/biobb_canal/biobb_canal_log.out:file_utils.py:391 Executing biobb_dna.curvesplus.biobb_canal Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/biobb_canal/biobb_canal_log.out:file_utils.py:82 /tmp/biobb/unitests_185/biobb_canal/sandbox_f171288b-3842-47ed-bd32-889e5871f561 directory successfully created\nINFO     /tmp/biobb/unitests_185/biobb_canal/biobb_canal_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/curves_output.cda to /tmp/biobb/unitests_185/biobb_canal/sandbox_f171288b-3842-47ed-bd32-889e5871f561\nINFO     /tmp/biobb/unitests_185/biobb_canal/biobb_canal_log.out:file_utils.py:391 Creating command line with instructions and required arguments\nINFO     /tmp/biobb/unitests_185/biobb_canal/biobb_canal_log.out:cmd_wrapper.py:33 Canal &amp;lt;&amp;lt;! \n&amp;amp;inp\n  lis=canal_output,\n  cormin=0.6,\n  lev1=0,lev2=0,\n  itst=0,itnd=0,itdel=1,\n  histo=.t.,\n  series=.t.,\n  corr=.t.,\n&amp;amp;end\ncurves_output.cda CGCGAATTCGCG\n!\n\nINFO     /tmp/biobb/unitests_185/biobb_canal/biobb_canal_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_185/biobb_canal/biobb_canal_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/biobb_canal/sandbox_f171288b-3842-47ed-bd32-889e5871f561&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py::TestCanalUnzip::test_canal_unzip&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py::TestCanalUnzip::test_canal_unzip&#34;, &#34;duration&#34;: &#34;88 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py::TestCanalUnzip::test_canal_unzip&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;88 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:10,043 [MainThread  ] [INFO ]  Executing biobb_dna.curvesplus.canal_unzip Version: 4.2.2\n2024-06-27 09:08:10,044 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/canal_unzip/sandbox_ba1ca412-1792-429f-8eee-ac5b14fda779 directory successfully created\n2024-06-27 09:08:10,076 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/canal_output.zip to /tmp/biobb/unitests_185/canal_unzip/sandbox_ba1ca412-1792-429f-8eee-ac5b14fda779\n2024-06-27 09:08:10,079 [MainThread  ] [INFO ]  canal_output_alphaC.his exists, copying into /tmp/biobb/unitests_185/canal_unzip/sandbox_ba1ca412-1792-429f-8eee-ac5b14fda779/canal_unzip_output.ser.\n2024-06-27 09:08:10,084 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/canal_unzip/sandbox_ba1ca412-1792-429f-8eee-ac5b14fda779&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/canal_unzip/canal_unzip_output.ser\nChecking if empty file: /tmp/biobb/unitests_185/canal_unzip/canal_unzip_output.txt\nComparing: \n        File_A: /tmp/biobb/unitests_185/canal_unzip/canal_unzip_output.ser\n        File_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/curvesplus/canal_unzip_output.ser\n        File_A hash: b&amp;#x27;\\r\\x84{\\xb8:rpBW\\xb4M\\x86\\xfd8I\\xfe\\xd3i\\x19CV_\\xd7\\x91\\xa5\\xf4\\xf4 \\xa6\\xed\\xc1\\xec&amp;#x27;\n        File_B hash: b&amp;#x27;\\r\\x84{\\xb8:rpBW\\xb4M\\x86\\xfd8I\\xfe\\xd3i\\x19CV_\\xd7\\x91\\xa5\\xf4\\xf4 \\xa6\\xed\\xc1\\xec&amp;#x27;\nComparing: \n        File_A: /tmp/biobb/unitests_185/canal_unzip/canal_unzip_output.txt\n        File_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/curvesplus/canal_unzip_output.txt\n        File_A hash: b&amp;#x27;\\x00&amp;gt;\\x1f\\x86\\x87\\xae]^K\\t\\xa5\\x9a3\\x17\\xf1\\x91P\\x97O\\x04q\\xd6\\xd3d\\n\\xec4j\\x1d\\x1a\\x82\\xa5&amp;#x27;\n        File_B hash: b&amp;#x27;\\x00&amp;gt;\\x1f\\x86\\x87\\xae]^K\\t\\xa5\\x9a3\\x17\\xf1\\x91P\\x97O\\x04q\\xd6\\xd3d\\n\\xec4j\\x1d\\x1a\\x82\\xa5&amp;#x27;\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/canal_unzip/canal_unzip_log.out:file_utils.py:391 Executing biobb_dna.curvesplus.canal_unzip Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/canal_unzip/canal_unzip_log.out:file_utils.py:82 /tmp/biobb/unitests_185/canal_unzip/sandbox_ba1ca412-1792-429f-8eee-ac5b14fda779 directory successfully created\nINFO     /tmp/biobb/unitests_185/canal_unzip/canal_unzip_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/canal_output.zip to /tmp/biobb/unitests_185/canal_unzip/sandbox_ba1ca412-1792-429f-8eee-ac5b14fda779\nINFO     /tmp/biobb/unitests_185/canal_unzip/canal_unzip_log.out:file_utils.py:391 canal_output_alphaC.his exists, copying into /tmp/biobb/unitests_185/canal_unzip/sandbox_ba1ca412-1792-429f-8eee-ac5b14fda779/canal_unzip_output.ser.\nINFO     /tmp/biobb/unitests_185/canal_unzip/canal_unzip_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/canal_unzip/sandbox_ba1ca412-1792-429f-8eee-ac5b14fda779&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_curvesplus/test_canion.py::TestCanal::test_canion&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_curvesplus/test_canion.py::TestCanal::test_canion&#34;, &#34;duration&#34;: &#34;396 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_curvesplus/test_canion.py::TestCanal::test_canion&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;396 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:10,131 [MainThread  ] [INFO ]  Executing biobb_dna.curvesplus.biobb_canion Version: 4.2.2\n2024-06-27 09:08:10,131 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250 directory successfully created\n2024-06-27 09:08:10,424 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA_K.cdi to /tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250\n2024-06-27 09:08:10,425 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA.afr to /tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250\n2024-06-27 09:08:10,425 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA_avg.pdb to /tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250\n2024-06-27 09:08:10,426 [MainThread  ] [INFO ]  Creating command line with instructions and required arguments\n2024-06-27 09:08:10,426 [MainThread  ] [INFO ]  Canion &amp;lt;&amp;lt;! \n&amp;amp;inp\n  lis=canion_output,\n  dat=THGA_K,\n  axfrm=THGA,\n  solute=THGA_avg,\n  type=K+,\n  dlow=5.8,\n  dhig=7.2,\n  rlow=0,\n  rhig=18,\n  alow=0,\n  ahig=360,\n  itst=0,\n  itnd=0,\n  itdel=1,\n  rmsf=.f.,\n  circ=.f.,\n&amp;amp;end\n!\n\n2024-06-27 09:08:10,438 [MainThread  ] [INFO ]  Exit code 0\n\n2024-06-27 09:08:10,481 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/biobb_canion/canion_output.zip\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:file_utils.py:391 Executing biobb_dna.curvesplus.biobb_canion Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:file_utils.py:82 /tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250 directory successfully created\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA_K.cdi to /tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA.afr to /tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA_avg.pdb to /tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:file_utils.py:391 Creating command line with instructions and required arguments\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:cmd_wrapper.py:33 Canion &amp;lt;&amp;lt;! \n&amp;amp;inp\n  lis=canion_output,\n  dat=THGA_K,\n  axfrm=THGA,\n  solute=THGA_avg,\n  type=K+,\n  dlow=5.8,\n  dhig=7.2,\n  rlow=0,\n  rhig=18,\n  alow=0,\n  ahig=360,\n  itst=0,\n  itnd=0,\n  itdel=1,\n  rmsf=.f.,\n  circ=.f.,\n&amp;amp;end\n!\n\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_185/biobb_canion/biobb_canion_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/biobb_canion/sandbox_c5b605c5-4874-4369-906d-497559d2e250&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_curvesplus/test_curves.py::TestCurves::test_curves&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_curvesplus/test_curves.py::TestCurves::test_curves&#34;, &#34;duration&#34;: &#34;00:00:07&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_curvesplus/test_curves.py::TestCurves::test_curves&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:07&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:10,531 [MainThread  ] [INFO ]  Executing biobb_dna.curvesplus.biobb_curves Version: 4.2.2\n2024-06-27 09:08:10,531 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/biobb_curves/sandbox_ed3712d4-ff6d-4a4b-968d-70cb04330500 directory successfully created\n2024-06-27 09:08:10,601 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/structure.stripped.trj to /tmp/biobb/unitests_185/biobb_curves/sandbox_ed3712d4-ff6d-4a4b-968d-70cb04330500\n2024-06-27 09:08:10,602 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/structure.stripped.top to /tmp/biobb/unitests_185/biobb_curves/sandbox_ed3712d4-ff6d-4a4b-968d-70cb04330500\n2024-06-27 09:08:10,603 [MainThread  ] [INFO ]  Appending provided topology to command\n2024-06-27 09:08:10,603 [MainThread  ] [INFO ]  Creating command line with instructions and required arguments\n2024-06-27 09:08:10,603 [MainThread  ] [INFO ]  Cur+ &amp;lt;&amp;lt;! \n&amp;amp;inp\n  file=structure.stripped.trj,\n  ftop=structure.stripped.top,\n  lis=&amp;#x27;curves_output&amp;#x27;,\n  lib=.curvesplus/standard,\n  ions=.t.,\n  test=.f.,\n  line=.f.,\n  fit=.t.,\n  axfrm=.f.,\n  itst=0,itnd=0,itdel=1,\n&amp;amp;end\n2 1 -1 0 0\n1:12\n24:13\n!\n\n2024-06-27 09:08:17,291 [MainThread  ] [INFO ]  Exit code 0\n\n2024-06-27 09:08:17,364 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/biobb_curves/sandbox_ed3712d4-ff6d-4a4b-968d-70cb04330500&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/biobb_curves/curves_output.cda\nChecking if empty file: /tmp/biobb/unitests_185/biobb_curves/curves_output.lis\nChecking if empty file: /tmp/biobb/unitests_185/biobb_curves/curves_output.zip\nComparing ignoring lines containing this words: [2]\n     FILE_A: /tmp/biobb/unitests_185/biobb_curves/curves_output.lis\n     FILE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/curvesplus/curves_trj_output.lis\nThis is a ZIP comparison!\nUnzipping:\nCreating a unique_dir for: /tmp/biobb/unitests_185/biobb_curves/curves_output.zip\nCreating a unique_dir for: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/curvesplus/curves_trj_output.zip\nComparing: \n        File_A: aca0453f-c5b4-4b3d-8168-ebd75f791157/curves_output.cdi\n        File_B: 24cb70d3-59a8-4ee4-8914-d37b44027761/curves_output.cdi\n        File_A hash: b&amp;#x27;\\xbf\\x13\\x93\\xa0\\xc8\\xba\\x96\\xaa\\xd5sy\\xda\\x0f\\xe1m|\\xab\\xd4\\x9c z\\x9a\\x9d\\xde\\x07\\x7f\\xe3\\x1c\\x0cf_h&amp;#x27;\n        File_B hash: b&amp;#x27;\\xbf\\x13\\x93\\xa0\\xc8\\xba\\x96\\xaa\\xd5sy\\xda\\x0f\\xe1m|\\xab\\xd4\\x9c z\\x9a\\x9d\\xde\\x07\\x7f\\xe3\\x1c\\x0cf_h&amp;#x27;\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:file_utils.py:391 Executing biobb_dna.curvesplus.biobb_curves Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:file_utils.py:82 /tmp/biobb/unitests_185/biobb_curves/sandbox_ed3712d4-ff6d-4a4b-968d-70cb04330500 directory successfully created\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/structure.stripped.trj to /tmp/biobb/unitests_185/biobb_curves/sandbox_ed3712d4-ff6d-4a4b-968d-70cb04330500\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/structure.stripped.top to /tmp/biobb/unitests_185/biobb_curves/sandbox_ed3712d4-ff6d-4a4b-968d-70cb04330500\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:file_utils.py:391 Appending provided topology to command\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:file_utils.py:391 Creating command line with instructions and required arguments\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:cmd_wrapper.py:33 Cur+ &amp;lt;&amp;lt;! \n&amp;amp;inp\n  file=structure.stripped.trj,\n  ftop=structure.stripped.top,\n  lis=&amp;#x27;curves_output&amp;#x27;,\n  lib=.curvesplus/standard,\n  ions=.t.,\n  test=.f.,\n  line=.f.,\n  fit=.t.,\n  axfrm=.f.,\n  itst=0,itnd=0,itdel=1,\n&amp;amp;end\n2 1 -1 0 0\n1:12\n24:13\n!\n\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_185/biobb_curves/biobb_curves_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/biobb_curves/sandbox_ed3712d4-ff6d-4a4b-968d-70cb04330500&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_dna/test_averages.py::TestAverages::test_helparaverages&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_dna/test_averages.py::TestAverages::test_helparaverages&#34;, &#34;duration&#34;: &#34;241 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_dna/test_averages.py::TestAverages::test_helparaverages&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;241 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:17,470 [MainThread  ] [INFO ]  Executing biobb_dna.dna.dna_averages Version: 4.2.2\n2024-06-27 09:08:17,470 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/dna_averages/sandbox_a4aa0550-629b-4e8c-ae94-2a694673bcf8 directory successfully created\n2024-06-27 09:08:17,471 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/canal_output_shift.ser to /tmp/biobb/unitests_185/dna_averages/sandbox_a4aa0550-629b-4e8c-ae94-2a694673bcf8\n2024-06-27 09:08:17,628 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/dna_averages/sandbox_a4aa0550-629b-4e8c-ae94-2a694673bcf8&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/dna_averages/avg_out.csv\nChecking if empty file: /tmp/biobb/unitests_185/dna_averages/avg_out.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/dna_averages/avg_out.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/dna/shift_avg.jpg\n     IMAGE_A HASH: c07e3e32163f3ee3 SIZE: 64 bits\n     IMAGE_B HASH: c07e3e32163f3ee3 SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/dna_averages/dna_averages_log.out:file_utils.py:391 Executing biobb_dna.dna.dna_averages Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/dna_averages/dna_averages_log.out:file_utils.py:82 /tmp/biobb/unitests_185/dna_averages/sandbox_a4aa0550-629b-4e8c-ae94-2a694673bcf8 directory successfully created\nINFO     /tmp/biobb/unitests_185/dna_averages/dna_averages_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/canal_output_shift.ser to /tmp/biobb/unitests_185/dna_averages/sandbox_a4aa0550-629b-4e8c-ae94-2a694673bcf8\nINFO     /tmp/biobb/unitests_185/dna_averages/dna_averages_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/dna_averages/sandbox_a4aa0550-629b-4e8c-ae94-2a694673bcf8&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_dna/test_bimodality.py::TestBimodality::test_helparbimodality&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_dna/test_bimodality.py::TestBimodality::test_helparbimodality&#34;, &#34;duration&#34;: &#34;604 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_dna/test_bimodality.py::TestBimodality::test_helparbimodality&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;604 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:17,711 [MainThread  ] [INFO ]  Executing biobb_dna.dna.dna_bimodality Version: 4.2.2\n2024-06-27 09:08:17,712 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/dna_bimodality/sandbox_ca89cccf-0309-4128-b98d-cdaa53feb326 directory successfully created\n2024-06-27 09:08:17,712 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/series_shift_AT.csv to /tmp/biobb/unitests_185/dna_bimodality/sandbox_ca89cccf-0309-4128-b98d-cdaa53feb326\n2024-06-27 09:08:18,269 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/dna_bimodality/sandbox_ca89cccf-0309-4128-b98d-cdaa53feb326&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/dna_bimodality/bimod_out.csv\nChecking if empty file: /tmp/biobb/unitests_185/dna_bimodality/bimod_out.jpg\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/dna_bimodality/dna_bimodality_log.out:file_utils.py:391 Executing biobb_dna.dna.dna_bimodality Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/dna_bimodality/dna_bimodality_log.out:file_utils.py:82 /tmp/biobb/unitests_185/dna_bimodality/sandbox_ca89cccf-0309-4128-b98d-cdaa53feb326 directory successfully created\nINFO     /tmp/biobb/unitests_185/dna_bimodality/dna_bimodality_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/series_shift_AT.csv to /tmp/biobb/unitests_185/dna_bimodality/sandbox_ca89cccf-0309-4128-b98d-cdaa53feb326\nINFO     /tmp/biobb/unitests_185/dna_bimodality/dna_bimodality_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/dna_bimodality/sandbox_ca89cccf-0309-4128-b98d-cdaa53feb326&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_dna/test_timeseries.py::TestTimeSeries::test_helpartimeseries&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_dna/test_timeseries.py::TestTimeSeries::test_helpartimeseries&#34;, &#34;duration&#34;: &#34;00:00:04&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_dna/test_timeseries.py::TestTimeSeries::test_helpartimeseries&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:04&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:18,318 [MainThread  ] [INFO ]  Executing biobb_dna.dna.dna_timeseries Version: 4.2.2\n2024-06-27 09:08:18,319 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/dna_timeseries/sandbox_7077f8cd-4f17-4d82-88b2-964b9728e7b9 directory successfully created\n2024-06-27 09:08:18,319 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/canal_output_shift.ser to /tmp/biobb/unitests_185/dna_timeseries/sandbox_7077f8cd-4f17-4d82-88b2-964b9728e7b9\n2024-06-27 09:08:22,536 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/dna_timeseries/sandbox_7077f8cd-4f17-4d82-88b2-964b9728e7b9&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/dna_timeseries/timeseries_output.zip\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/dna_timeseries/dna_timeseries_log.out:file_utils.py:391 Executing biobb_dna.dna.dna_timeseries Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/dna_timeseries/dna_timeseries_log.out:file_utils.py:82 /tmp/biobb/unitests_185/dna_timeseries/sandbox_7077f8cd-4f17-4d82-88b2-964b9728e7b9 directory successfully created\nINFO     /tmp/biobb/unitests_185/dna_timeseries/dna_timeseries_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/canal_output_shift.ser to /tmp/biobb/unitests_185/dna_timeseries/sandbox_7077f8cd-4f17-4d82-88b2-964b9728e7b9\nINFO     /tmp/biobb/unitests_185/dna_timeseries/dna_timeseries_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/dna_timeseries/sandbox_7077f8cd-4f17-4d82-88b2-964b9728e7b9&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py::TestCanalUnzip::test_dna_timeseries_unzip&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py::TestCanalUnzip::test_dna_timeseries_unzip&#34;, &#34;duration&#34;: &#34;84 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py::TestCanalUnzip::test_dna_timeseries_unzip&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;84 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:22,586 [MainThread  ] [INFO ]  Executing biobb_dna.dna.dna_timeseries_unzip Version: 4.2.2\n2024-06-27 09:08:22,586 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1 directory successfully created\n2024-06-27 09:08:22,587 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/timeseries_output.zip to /tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1\n2024-06-27 09:08:22,588 [MainThread  ] [INFO ]  hist_shift_6_AT.csv exists, copying into /tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1/dna_timeseries_unzip.csv.\n2024-06-27 09:08:22,588 [MainThread  ] [INFO ]  hist_shift_6_AT.jpg exists, copying into /tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1/dna_timeseries_unzip.jpg.\n2024-06-27 09:08:22,589 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip.csv\nChecking if empty file: /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip.jpg\nChecking if empty file: /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip.txt\nComparing: \n        File_A: /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip.csv\n        File_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/dna/dna_timeseries_unzip.csv\n        File_A hash: b&amp;#x27;\\xa2W\\xf05tAU\\xa7\\x93\\xe2\\x12L\\xddq\\x86\\xcdN\\xf8\\xd6\\xf6\\x0cO\\x0bJu\\xa8\\tRO\\xc0lH&amp;#x27;\n        File_B hash: b&amp;#x27;\\xa2W\\xf05tAU\\xa7\\x93\\xe2\\x12L\\xddq\\x86\\xcdN\\xf8\\xd6\\xf6\\x0cO\\x0bJu\\xa8\\tRO\\xc0lH&amp;#x27;\nComparing: \n        File_A: /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip.txt\n        File_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/dna/dna_timeseries_unzip.txt\n        File_A hash: b&amp;#x27;O\\xeeQ\\xcb\\xd3T\\xf3\\x9e\\xbc\\xa6\\xcb\\xd8\\xb6F\\x12r\\x12\\xb4I.\\xf9\\xa6/e}\\x85\\xf9\\x18\\x06\\xe18\\xd4&amp;#x27;\n        File_B hash: b&amp;#x27;O\\xeeQ\\xcb\\xd3T\\xf3\\x9e\\xbc\\xa6\\xcb\\xd8\\xb6F\\x12r\\x12\\xb4I.\\xf9\\xa6/e}\\x85\\xf9\\x18\\x06\\xe18\\xd4&amp;#x27;\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/dna/dna_timeseries_unzip.jpg\n     IMAGE_A HASH: ffe7e7e7e7e3c3ff SIZE: 64 bits\n     IMAGE_B HASH: ffe7e7e7e7e3c3ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 Executing biobb_dna.dna.dna_timeseries_unzip Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:82 /tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1 directory successfully created\nINFO     /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/timeseries_output.zip to /tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1\nINFO     /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 hist_shift_6_AT.csv exists, copying into /tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1/dna_timeseries_unzip.csv.\nINFO     /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 hist_shift_6_AT.jpg exists, copying into /tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1/dna_timeseries_unzip.jpg.\nINFO     /tmp/biobb/unitests_185/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/dna_timeseries_unzip/sandbox_29511878-019d-467b-8b9b-3bc3af3a9fa1&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestAvgStiffness::test_averagestiffness&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestAvgStiffness::test_averagestiffness&#34;, &#34;duration&#34;: &#34;251 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestAvgStiffness::test_averagestiffness&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;251 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:22,668 [MainThread  ] [INFO ]  Executing biobb_dna.stiffness.average_stiffness Version: 4.2.2\n2024-06-27 09:08:22,668 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/average_stiffness/sandbox_f823efa5-5831-43e7-8043-609408bb8842 directory successfully created\n2024-06-27 09:08:22,669 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/canal_output_roll.ser to /tmp/biobb/unitests_185/average_stiffness/sandbox_f823efa5-5831-43e7-8043-609408bb8842\n2024-06-27 09:08:22,837 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/average_stiffness/sandbox_f823efa5-5831-43e7-8043-609408bb8842&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/average_stiffness/avgstiff.csv\nChecking if empty file: /tmp/biobb/unitests_185/average_stiffness/avgstiff.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/average_stiffness/avgstiff.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/stiffness/stiffavg_roll.jpg\n     IMAGE_A HASH: 017f7f7f1d7f7e80 SIZE: 64 bits\n     IMAGE_B HASH: 017f7f7f1d7f7e80 SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/average_stiffness/average_stiffness_log.out:file_utils.py:391 Executing biobb_dna.stiffness.average_stiffness Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/average_stiffness/average_stiffness_log.out:file_utils.py:82 /tmp/biobb/unitests_185/average_stiffness/sandbox_f823efa5-5831-43e7-8043-609408bb8842 directory successfully created\nINFO     /tmp/biobb/unitests_185/average_stiffness/average_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/canal_output_roll.ser to /tmp/biobb/unitests_185/average_stiffness/sandbox_f823efa5-5831-43e7-8043-609408bb8842\nINFO     /tmp/biobb/unitests_185/average_stiffness/average_stiffness_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/average_stiffness/sandbox_f823efa5-5831-43e7-8043-609408bb8842&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestBasePairStiffness::test_basepairstiffness&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestBasePairStiffness::test_basepairstiffness&#34;, &#34;duration&#34;: &#34;319 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestBasePairStiffness::test_basepairstiffness&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;319 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:08:22,921 [MainThread  ] [INFO ]  Executing biobb_dna.stiffness.basepair_stiffness Version: 4.2.2\n2024-06-27 09:08:22,921 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001 directory successfully created\n2024-06-27 09:08:22,921 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_shift_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\n2024-06-27 09:08:22,922 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_slide_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\n2024-06-27 09:08:22,922 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_rise_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\n2024-06-27 09:08:22,922 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_tilt_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\n2024-06-27 09:08:22,923 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_roll_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\n2024-06-27 09:08:22,923 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_twist_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\nChecking if empty file: /tmp/biobb/unitests_185/basepair_stiffness/bpstiff.csv\nChecking if empty file: /tmp/biobb/unitests_185/basepair_stiffness/bpstiff.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/basepair_stiffness/bpstiff.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/stiffness/stiffbp_ref.jpg\n     IMAGE_A HASH: ff8080909080ffff SIZE: 64 bits\n     IMAGE_B HASH: ff8080909080ffff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Executing biobb_dna.stiffness.basepair_stiffness Version: 4.2.2\nINFO     /tmp/biobb/unitests_185/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:82 /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001 directory successfully created\nINFO     /tmp/biobb/unitests_185/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_shift_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\nINFO     /tmp/biobb/unitests_185/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_slide_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\nINFO     /tmp/biobb/unitests_185/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_rise_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\nINFO     /tmp/biobb/unitests_185/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_tilt_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\nINFO     /tmp/biobb/unitests_185/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_roll_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\nINFO     /tmp/biobb/unitests_185/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_twist_AA.csv to /tmp/biobb/unitests_185/basepair_stiffness/sandbox_73d0403d-5663-4a7c-802c-1560d61f6001\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
+    <div id="data-container" data-jsonblob="{&#34;environment&#34;: {&#34;Python&#34;: &#34;3.10.14&#34;, &#34;Platform&#34;: &#34;Linux-5.4.0-159-generic-x86_64-with-glibc2.31&#34;, &#34;Packages&#34;: {&#34;pytest&#34;: &#34;8.2.2&#34;, &#34;pluggy&#34;: &#34;1.5.0&#34;}, &#34;Plugins&#34;: {&#34;metadata&#34;: &#34;3.1.1&#34;, &#34;html&#34;: &#34;4.1.1&#34;, &#34;cov&#34;: &#34;5.0.0&#34;}, &#34;CI&#34;: &#34;true&#34;}, &#34;tests&#34;: {&#34;biobb_dna/test/unitests/test_backbone/test_bipopulations.py::TestBIPopulations::test_bipopulations&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_backbone/test_bipopulations.py::TestBIPopulations::test_bipopulations&#34;, &#34;duration&#34;: &#34;513 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_backbone/test_bipopulations.py::TestBIPopulations::test_bipopulations&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;513 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:10,795 [MainThread  ] [INFO ]  Executing biobb_dna.backbone.bipopulations Version: 4.2.3\n2024-06-27 09:46:10,795 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0 directory successfully created\n2024-06-27 09:46:10,796 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_epsilC.ser to /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0\n2024-06-27 09:46:10,797 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_epsilW.ser to /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0\n2024-06-27 09:46:10,797 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_zetaC.ser to /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0\n2024-06-27 09:46:10,798 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_zetaW.ser to /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0\n2024-06-27 09:46:11,208 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/bipopulations/bipop.csv\nChecking if empty file: /tmp/biobb/unitests_185/bipopulations/bipop.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/bipopulations/bipop.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/backbone/bipop_ref.jpg\n     IMAGE_A HASH: ff8981818181c9ff SIZE: 64 bits\n     IMAGE_B HASH: ff8981818180c9ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 1 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/bipopulations/bipopulations_log.out:file_utils.py:391 Executing biobb_dna.backbone.bipopulations Version: 4.2.3\nINFO     /tmp/biobb/unitests_185/bipopulations/bipopulations_log.out:file_utils.py:82 /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0 directory successfully created\nINFO     /tmp/biobb/unitests_185/bipopulations/bipopulations_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_epsilC.ser to /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0\nINFO     /tmp/biobb/unitests_185/bipopulations/bipopulations_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_epsilW.ser to /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0\nINFO     /tmp/biobb/unitests_185/bipopulations/bipopulations_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_zetaC.ser to /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0\nINFO     /tmp/biobb/unitests_185/bipopulations/bipopulations_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_zetaW.ser to /tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0\nINFO     /tmp/biobb/unitests_185/bipopulations/bipopulations_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/bipopulations/sandbox_f07350b3-7428-4a9b-8c58-98ff4dbe08f0&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py::TestCanonicalAlphaGamma::test_canonicalag&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py::TestCanonicalAlphaGamma::test_canonicalag&#34;, &#34;duration&#34;: &#34;476 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py::TestCanonicalAlphaGamma::test_canonicalag&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;476 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:11,314 [MainThread  ] [INFO ]  Executing biobb_dna.backbone.canonicalag Version: 4.2.3\n2024-06-27 09:46:11,314 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa directory successfully created\n2024-06-27 09:46:11,315 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_alphaC.ser to /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa\n2024-06-27 09:46:11,316 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_alphaW.ser to /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa\n2024-06-27 09:46:11,316 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_gammaC.ser to /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa\n2024-06-27 09:46:11,317 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_gammaW.ser to /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa\n2024-06-27 09:46:11,706 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/canonicalag/canonag.csv\nChecking if empty file: /tmp/biobb/unitests_185/canonicalag/canonag.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/canonicalag/canonag.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/backbone/canonag_ref.jpg\n     IMAGE_A HASH: ff8081818180f9ff SIZE: 64 bits\n     IMAGE_B HASH: ff8081818180f9ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/canonicalag/canonicalag_log.out:file_utils.py:391 Executing biobb_dna.backbone.canonicalag Version: 4.2.3\nINFO     /tmp/biobb/unitests_185/canonicalag/canonicalag_log.out:file_utils.py:82 /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa directory successfully created\nINFO     /tmp/biobb/unitests_185/canonicalag/canonicalag_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_alphaC.ser to /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa\nINFO     /tmp/biobb/unitests_185/canonicalag/canonicalag_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_alphaW.ser to /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa\nINFO     /tmp/biobb/unitests_185/canonicalag/canonicalag_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_gammaC.ser to /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa\nINFO     /tmp/biobb/unitests_185/canonicalag/canonicalag_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_gammaW.ser to /tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa\nINFO     /tmp/biobb/unitests_185/canonicalag/canonicalag_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/canonicalag/sandbox_8197b24b-69eb-43f3-8f66-8f20c775fdaa&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_backbone/test_puckering.py::TestPuckering::test_puckering&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_backbone/test_puckering.py::TestPuckering::test_puckering&#34;, &#34;duration&#34;: &#34;591 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_backbone/test_puckering.py::TestPuckering::test_puckering&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;591 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:11,790 [MainThread  ] [INFO ]  Executing biobb_dna.backbone.puckering Version: 4.2.3\n2024-06-27 09:46:11,791 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/puckering/sandbox_db50b595-30de-4b40-b46e-0f88d645ec8a directory successfully created\n2024-06-27 09:46:11,791 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_phaseC.ser to /tmp/biobb/unitests_185/puckering/sandbox_db50b595-30de-4b40-b46e-0f88d645ec8a\n2024-06-27 09:46:11,792 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_phaseW.ser to /tmp/biobb/unitests_185/puckering/sandbox_db50b595-30de-4b40-b46e-0f88d645ec8a\n2024-06-27 09:46:12,292 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/puckering/sandbox_db50b595-30de-4b40-b46e-0f88d645ec8a&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/puckering/puckering.csv\nChecking if empty file: /tmp/biobb/unitests_185/puckering/puckering.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/puckering/puckering.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/backbone/puckering_ref.jpg\n     IMAGE_A HASH: eb8181808081ffff SIZE: 64 bits\n     IMAGE_B HASH: eb8181808081ffff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/puckering/puckering_log.out:file_utils.py:391 Executing biobb_dna.backbone.puckering Version: 4.2.3\nINFO     /tmp/biobb/unitests_185/puckering/puckering_log.out:file_utils.py:82 /tmp/biobb/unitests_185/puckering/sandbox_db50b595-30de-4b40-b46e-0f88d645ec8a directory successfully created\nINFO     /tmp/biobb/unitests_185/puckering/puckering_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_phaseC.ser to /tmp/biobb/unitests_185/puckering/sandbox_db50b595-30de-4b40-b46e-0f88d645ec8a\nINFO     /tmp/biobb/unitests_185/puckering/puckering_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/backbone/canal_output_phaseW.ser to /tmp/biobb/unitests_185/puckering/sandbox_db50b595-30de-4b40-b46e-0f88d645ec8a\nINFO     /tmp/biobb/unitests_185/puckering/puckering_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/puckering/sandbox_db50b595-30de-4b40-b46e-0f88d645ec8a&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterHelparCorrelation::test_helparcorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterHelparCorrelation::test_helparcorrelation&#34;, &#34;duration&#34;: &#34;289 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterHelparCorrelation::test_helparcorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;289 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:12,383 [MainThread  ] [INFO ]  Executing biobb_dna.interbp_correlations.interhpcorr Version: 4.2.3\n2024-06-27 09:46:12,384 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7 directory successfully created\n2024-06-27 09:46:12,384 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_shift_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\n2024-06-27 09:46:12,384 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_slide_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\n2024-06-27 09:46:12,385 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_rise_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\n2024-06-27 09:46:12,385 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_tilt_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\n2024-06-27 09:46:12,385 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_roll_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\n2024-06-27 09:46:12,386 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_twist_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\n2024-06-27 09:46:12,586 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/interhpcorr/inter_hpcorr.csv\nChecking if empty file: /tmp/biobb/unitests_185/interhpcorr/inter_hpcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/interhpcorr/inter_hpcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/inter_hpcorr_ref.jpg\n     IMAGE_A HASH: ff83868890a1c0ff SIZE: 64 bits\n     IMAGE_B HASH: ff83868890a1c0ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:391 Executing biobb_dna.interbp_correlations.interhpcorr Version: 4.2.3\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:82 /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7 directory successfully created\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_shift_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_slide_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_rise_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_tilt_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_roll_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_twist_AA.csv to /tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7\nINFO     /tmp/biobb/unitests_185/interhpcorr/log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/interhpcorr/sandbox_99d87560-3ba7-48a2-8b4a-02dabdca35d7&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterSequenceCorrelation::test_sequencecorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterSequenceCorrelation::test_sequencecorrelation&#34;, &#34;duration&#34;: &#34;357 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterSequenceCorrelation::test_sequencecorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;357 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:12,673 [MainThread  ] [INFO ]  Executing biobb_dna.interbp_correlations.interseqcorr Version: 4.2.3\n2024-06-27 09:46:12,673 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/interseqcorr/sandbox_badc692b-f3c6-4d67-a1c3-fce63446228e directory successfully created\n2024-06-27 09:46:12,674 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_roll.ser to /tmp/biobb/unitests_185/interseqcorr/sandbox_badc692b-f3c6-4d67-a1c3-fce63446228e\n2024-06-27 09:46:12,947 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/interseqcorr/sandbox_badc692b-f3c6-4d67-a1c3-fce63446228e&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/interseqcorr/inter_seqcorr.csv\nChecking if empty file: /tmp/biobb/unitests_185/interseqcorr/inter_seqcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/interseqcorr/inter_seqcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/inter_seqcorr_roll.jpg\n     IMAGE_A HASH: ff8080889080c0ff SIZE: 64 bits\n     IMAGE_B HASH: ff8080889080c0ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/interseqcorr/interseqcorr_log.out:file_utils.py:391 Executing biobb_dna.interbp_correlations.interseqcorr Version: 4.2.3\nINFO     /tmp/biobb/unitests_185/interseqcorr/interseqcorr_log.out:file_utils.py:82 /tmp/biobb/unitests_185/interseqcorr/sandbox_badc692b-f3c6-4d67-a1c3-fce63446228e directory successfully created\nINFO     /tmp/biobb/unitests_185/interseqcorr/interseqcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_roll.ser to /tmp/biobb/unitests_185/interseqcorr/sandbox_badc692b-f3c6-4d67-a1c3-fce63446228e\nINFO     /tmp/biobb/unitests_185/interseqcorr/interseqcorr_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/interseqcorr/sandbox_badc692b-f3c6-4d67-a1c3-fce63446228e&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterBasepairCorrelation::test_basepaircorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterBasepairCorrelation::test_basepaircorrelation&#34;, &#34;duration&#34;: &#34;974 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestInterBasepairCorrelation::test_basepaircorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;974 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:13,031 [MainThread  ] [INFO ]  Executing biobb_dna.interbp_correlations.interbpcorr Version: 4.2.3\n2024-06-27 09:46:13,031 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2 directory successfully created\n2024-06-27 09:46:13,032 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_shift.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\n2024-06-27 09:46:13,033 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_slide.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\n2024-06-27 09:46:13,033 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_rise.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\n2024-06-27 09:46:13,034 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_tilt.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\n2024-06-27 09:46:13,035 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_roll.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\n2024-06-27 09:46:13,036 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_twist.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\n2024-06-27 09:46:13,912 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/interbpcorr/inter_bpcorr.csv\nChecking if empty file: /tmp/biobb/unitests_185/interbpcorr/inter_bpcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/interbpcorr/inter_bpcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/inter_bpcorr_ref.jpg\n     IMAGE_A HASH: fd6d6dfffd6c0183 SIZE: 64 bits\n     IMAGE_B HASH: fd6d6dfffd6c0183 SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:391 Executing biobb_dna.interbp_correlations.interbpcorr Version: 4.2.3\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:82 /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2 directory successfully created\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_shift.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_slide.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_rise.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_tilt.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_roll.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_twist.ser to /tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2\nINFO     /tmp/biobb/unitests_185/interbpcorr/interbpcorr_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/interbpcorr/sandbox_99d5c97e-bbe6-4e6e-ba1f-5fddcf15bce2&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraHelparCorrelation::test_helparcorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraHelparCorrelation::test_helparcorrelation&#34;, &#34;duration&#34;: &#34;289 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraHelparCorrelation::test_helparcorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;289 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:14,014 [MainThread  ] [INFO ]  Executing biobb_dna.intrabp_correlations.intrahpcorr Version: 4.2.3\n2024-06-27 09:46:14,014 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717 directory successfully created\n2024-06-27 09:46:14,015 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_shear_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\n2024-06-27 09:46:14,015 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_stretch_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\n2024-06-27 09:46:14,015 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_stagger_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\n2024-06-27 09:46:14,015 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_buckle_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\n2024-06-27 09:46:14,016 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_propel_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\n2024-06-27 09:46:14,016 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_opening_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\n2024-06-27 09:46:14,216 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/intrahpcorr/intra_hpcorr.csv\nChecking if empty file: /tmp/biobb/unitests_185/intrahpcorr/intra_hpcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/intrahpcorr/intra_hpcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/intra_hpcorr_ref.jpg\n     IMAGE_A HASH: fb81848890a0e0ff SIZE: 64 bits\n     IMAGE_B HASH: fb81848890a0e0ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:391 Executing biobb_dna.intrabp_correlations.intrahpcorr Version: 4.2.3\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:82 /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717 directory successfully created\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_shear_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_stretch_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_stagger_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_buckle_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_propel_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/series_opening_A.csv to /tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717\nINFO     /tmp/biobb/unitests_185/intrahpcorr/log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/intrahpcorr/sandbox_b564b276-e2e5-49a1-a465-b78b781cf717&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_185\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraSequenceCorrelation::test_sequencecorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraSequenceCorrelation::test_sequencecorrelation&#34;, &#34;duration&#34;: &#34;359 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraSequenceCorrelation::test_sequencecorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;359 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:14,301 [MainThread  ] [INFO ]  Executing biobb_dna.intrabp_correlations.intraseqcorr Version: 4.2.3\n2024-06-27 09:46:14,301 [MainThread  ] [INFO ]  /tmp/biobb/unitests_185/intraseqcorr/sandbox_b6800a48-6ce4-423e-9100-9353ea161194 directory successfully created\n2024-06-27 09:46:14,302 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_buckle.ser to /tmp/biobb/unitests_185/intraseqcorr/sandbox_b6800a48-6ce4-423e-9100-9353ea161194\n2024-06-27 09:46:14,573 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_185/intraseqcorr/sandbox_b6800a48-6ce4-423e-9100-9353ea161194&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_185/intraseqcorr/intra_seqcorr.csv\nChecking if empty file: /tmp/biobb/unitests_185/intraseqcorr/intra_seqcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_185/intraseqcorr/intra_seqcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/intra_seqcorr_buckle.jpg\n     IMAGE_A HASH: ff83848890a0c0ff SIZE: 64 bits\n     IMAGE_B HASH: ff83848890a0c0ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_185/intraseqcorr/intraseqcorr_log.out:file_utils.py:391 Executing biobb_dna.intrabp_correlations.intraseqcorr Version: 4.2.3\nINFO     /tmp/biobb/unitests_185/intraseqcorr/intraseqcorr_log.out:file_utils.py:82 /tmp/biobb/unitests_185/intraseqcorr/sandbox_b6800a48-6ce4-423e-9100-9353ea161194 directory successfully created\nINFO     /tmp/biobb/unitests_185/intraseqcorr/intraseqcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_buckle.ser to /tmp/biobb/unitests_185/intraseqcorr/sandbox_b6800a48-6ce4-423e-9100-9353ea161194\nINFO     /tmp/biobb/unitests_185/intraseqcorr/intraseqcorr_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_185/intraseqcorr/sandbox_b6800a48-6ce4-423e-9100-9353ea161194&amp;#x27;]\n\n&#34;}], &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraBasepairCorrelation::test_basepaircorrelation&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraBasepairCorrelation::test_basepaircorrelation&#34;, &#34;duration&#34;: &#34;910 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_correlation/test_correlation.py::TestIntraBasepairCorrelation::test_basepaircorrelation&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;910 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:14,664 [MainThread  ] [INFO ]  Executing biobb_dna.intrabp_correlations.intrabpcorr Version: 4.2.3\n2024-06-27 09:46:14,664 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9 directory successfully created\n2024-06-27 09:46:14,665 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_shear.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\n2024-06-27 09:46:14,666 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_stretch.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\n2024-06-27 09:46:14,667 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_stagger.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\n2024-06-27 09:46:14,668 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_buckle.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\n2024-06-27 09:46:14,669 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_propel.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\n2024-06-27 09:46:14,670 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_opening.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\n2024-06-27 09:46:15,479 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/intrabpcorr/intra_bpcorr.csv\nChecking if empty file: /tmp/biobb/unitests_186/intrabpcorr/intra_bpcorr.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_186/intrabpcorr/intra_bpcorr.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/correlation/intra_bpcorr_ref.jpg\n     IMAGE_A HASH: 01f5f7f7fcf40183 SIZE: 64 bits\n     IMAGE_B HASH: 01f5f7f7fcf40183 SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Executing biobb_dna.intrabp_correlations.intrabpcorr Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:82 /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9 directory successfully created\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_shear.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_stretch.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_stagger.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_buckle.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_propel.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/correlation/canal_output_opening.ser to /tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9\nINFO     /tmp/biobb/unitests_186/intrabpcorr/intrabpcorr_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/intrabpcorr/sandbox_99b204f9-868b-435b-9523-5471bfb12fa9&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_curvesplus/test_canal.py::TestCanal::test_canal&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_curvesplus/test_canal.py::TestCanal::test_canal&#34;, &#34;duration&#34;: &#34;00:00:09&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_curvesplus/test_canal.py::TestCanal::test_canal&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:09&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:15,573 [MainThread  ] [INFO ]  Executing biobb_dna.curvesplus.biobb_canal Version: 4.2.3\n2024-06-27 09:46:15,573 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/biobb_canal/sandbox_ccd201b8-afcf-4e56-aee7-f28b5c8e814a directory successfully created\n2024-06-27 09:46:15,589 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/curves_output.cda to /tmp/biobb/unitests_186/biobb_canal/sandbox_ccd201b8-afcf-4e56-aee7-f28b5c8e814a\n2024-06-27 09:46:15,589 [MainThread  ] [INFO ]  Creating command line with instructions and required arguments\n2024-06-27 09:46:15,589 [MainThread  ] [INFO ]  Canal &amp;lt;&amp;lt;! \n&amp;amp;inp\n  lis=canal_output,\n  cormin=0.6,\n  lev1=0,lev2=0,\n  itst=0,itnd=0,itdel=1,\n  histo=.t.,\n  series=.t.,\n  corr=.t.,\n&amp;amp;end\ncurves_output.cda CGCGAATTCGCG\n!\n\n2024-06-27 09:46:24,139 [MainThread  ] [INFO ]  Exit code 0\n\n2024-06-27 09:46:24,293 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/biobb_canal/sandbox_ccd201b8-afcf-4e56-aee7-f28b5c8e814a&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/biobb_canal/canal_output.zip\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/biobb_canal/biobb_canal_log.out:file_utils.py:391 Executing biobb_dna.curvesplus.biobb_canal Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/biobb_canal/biobb_canal_log.out:file_utils.py:82 /tmp/biobb/unitests_186/biobb_canal/sandbox_ccd201b8-afcf-4e56-aee7-f28b5c8e814a directory successfully created\nINFO     /tmp/biobb/unitests_186/biobb_canal/biobb_canal_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/curves_output.cda to /tmp/biobb/unitests_186/biobb_canal/sandbox_ccd201b8-afcf-4e56-aee7-f28b5c8e814a\nINFO     /tmp/biobb/unitests_186/biobb_canal/biobb_canal_log.out:file_utils.py:391 Creating command line with instructions and required arguments\nINFO     /tmp/biobb/unitests_186/biobb_canal/biobb_canal_log.out:cmd_wrapper.py:33 Canal &amp;lt;&amp;lt;! \n&amp;amp;inp\n  lis=canal_output,\n  cormin=0.6,\n  lev1=0,lev2=0,\n  itst=0,itnd=0,itdel=1,\n  histo=.t.,\n  series=.t.,\n  corr=.t.,\n&amp;amp;end\ncurves_output.cda CGCGAATTCGCG\n!\n\nINFO     /tmp/biobb/unitests_186/biobb_canal/biobb_canal_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_186/biobb_canal/biobb_canal_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/biobb_canal/sandbox_ccd201b8-afcf-4e56-aee7-f28b5c8e814a&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py::TestCanalUnzip::test_canal_unzip&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py::TestCanalUnzip::test_canal_unzip&#34;, &#34;duration&#34;: &#34;93 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py::TestCanalUnzip::test_canal_unzip&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;93 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:24,346 [MainThread  ] [INFO ]  Executing biobb_dna.curvesplus.canal_unzip Version: 4.2.3\n2024-06-27 09:46:24,346 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/canal_unzip/sandbox_0c3a66f7-4247-4c0c-bf60-4a0dff3c8244 directory successfully created\n2024-06-27 09:46:24,383 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/canal_output.zip to /tmp/biobb/unitests_186/canal_unzip/sandbox_0c3a66f7-4247-4c0c-bf60-4a0dff3c8244\n2024-06-27 09:46:24,386 [MainThread  ] [INFO ]  canal_output_alphaC.his exists, copying into /tmp/biobb/unitests_186/canal_unzip/sandbox_0c3a66f7-4247-4c0c-bf60-4a0dff3c8244/canal_unzip_output.ser.\n2024-06-27 09:46:24,391 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/canal_unzip/sandbox_0c3a66f7-4247-4c0c-bf60-4a0dff3c8244&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/canal_unzip/canal_unzip_output.ser\nChecking if empty file: /tmp/biobb/unitests_186/canal_unzip/canal_unzip_output.txt\nComparing: \n        File_A: /tmp/biobb/unitests_186/canal_unzip/canal_unzip_output.ser\n        File_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/curvesplus/canal_unzip_output.ser\n        File_A hash: b&amp;#x27;\\r\\x84{\\xb8:rpBW\\xb4M\\x86\\xfd8I\\xfe\\xd3i\\x19CV_\\xd7\\x91\\xa5\\xf4\\xf4 \\xa6\\xed\\xc1\\xec&amp;#x27;\n        File_B hash: b&amp;#x27;\\r\\x84{\\xb8:rpBW\\xb4M\\x86\\xfd8I\\xfe\\xd3i\\x19CV_\\xd7\\x91\\xa5\\xf4\\xf4 \\xa6\\xed\\xc1\\xec&amp;#x27;\nComparing: \n        File_A: /tmp/biobb/unitests_186/canal_unzip/canal_unzip_output.txt\n        File_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/curvesplus/canal_unzip_output.txt\n        File_A hash: b&amp;#x27;\\x00&amp;gt;\\x1f\\x86\\x87\\xae]^K\\t\\xa5\\x9a3\\x17\\xf1\\x91P\\x97O\\x04q\\xd6\\xd3d\\n\\xec4j\\x1d\\x1a\\x82\\xa5&amp;#x27;\n        File_B hash: b&amp;#x27;\\x00&amp;gt;\\x1f\\x86\\x87\\xae]^K\\t\\xa5\\x9a3\\x17\\xf1\\x91P\\x97O\\x04q\\xd6\\xd3d\\n\\xec4j\\x1d\\x1a\\x82\\xa5&amp;#x27;\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/canal_unzip/canal_unzip_log.out:file_utils.py:391 Executing biobb_dna.curvesplus.canal_unzip Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/canal_unzip/canal_unzip_log.out:file_utils.py:82 /tmp/biobb/unitests_186/canal_unzip/sandbox_0c3a66f7-4247-4c0c-bf60-4a0dff3c8244 directory successfully created\nINFO     /tmp/biobb/unitests_186/canal_unzip/canal_unzip_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/canal_output.zip to /tmp/biobb/unitests_186/canal_unzip/sandbox_0c3a66f7-4247-4c0c-bf60-4a0dff3c8244\nINFO     /tmp/biobb/unitests_186/canal_unzip/canal_unzip_log.out:file_utils.py:391 canal_output_alphaC.his exists, copying into /tmp/biobb/unitests_186/canal_unzip/sandbox_0c3a66f7-4247-4c0c-bf60-4a0dff3c8244/canal_unzip_output.ser.\nINFO     /tmp/biobb/unitests_186/canal_unzip/canal_unzip_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/canal_unzip/sandbox_0c3a66f7-4247-4c0c-bf60-4a0dff3c8244&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_curvesplus/test_canion.py::TestCanal::test_canion&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_curvesplus/test_canion.py::TestCanal::test_canion&#34;, &#34;duration&#34;: &#34;392 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_curvesplus/test_canion.py::TestCanal::test_canion&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;392 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:24,439 [MainThread  ] [INFO ]  Executing biobb_dna.curvesplus.biobb_canion Version: 4.2.3\n2024-06-27 09:46:24,439 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867 directory successfully created\n2024-06-27 09:46:24,737 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA_K.cdi to /tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867\n2024-06-27 09:46:24,738 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA.afr to /tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867\n2024-06-27 09:46:24,738 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA_avg.pdb to /tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867\n2024-06-27 09:46:24,738 [MainThread  ] [INFO ]  Creating command line with instructions and required arguments\n2024-06-27 09:46:24,738 [MainThread  ] [INFO ]  Canion &amp;lt;&amp;lt;! \n&amp;amp;inp\n  lis=canion_output,\n  dat=THGA_K,\n  axfrm=THGA,\n  solute=THGA_avg,\n  type=K+,\n  dlow=5.8,\n  dhig=7.2,\n  rlow=0,\n  rhig=18,\n  alow=0,\n  ahig=360,\n  itst=0,\n  itnd=0,\n  itdel=1,\n  rmsf=.f.,\n  circ=.f.,\n&amp;amp;end\n!\n\n2024-06-27 09:46:24,742 [MainThread  ] [INFO ]  Exit code 0\n\n2024-06-27 09:46:24,785 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/biobb_canion/canion_output.zip\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:file_utils.py:391 Executing biobb_dna.curvesplus.biobb_canion Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:file_utils.py:82 /tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867 directory successfully created\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA_K.cdi to /tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA.afr to /tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/THGA_avg.pdb to /tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:file_utils.py:391 Creating command line with instructions and required arguments\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:cmd_wrapper.py:33 Canion &amp;lt;&amp;lt;! \n&amp;amp;inp\n  lis=canion_output,\n  dat=THGA_K,\n  axfrm=THGA,\n  solute=THGA_avg,\n  type=K+,\n  dlow=5.8,\n  dhig=7.2,\n  rlow=0,\n  rhig=18,\n  alow=0,\n  ahig=360,\n  itst=0,\n  itnd=0,\n  itdel=1,\n  rmsf=.f.,\n  circ=.f.,\n&amp;amp;end\n!\n\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_186/biobb_canion/biobb_canion_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/biobb_canion/sandbox_942ad899-442c-4f0c-9423-4013af8a0867&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_curvesplus/test_curves.py::TestCurves::test_curves&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_curvesplus/test_curves.py::TestCurves::test_curves&#34;, &#34;duration&#34;: &#34;00:00:08&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_curvesplus/test_curves.py::TestCurves::test_curves&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:08&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:24,833 [MainThread  ] [INFO ]  Executing biobb_dna.curvesplus.biobb_curves Version: 4.2.3\n2024-06-27 09:46:24,833 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/biobb_curves/sandbox_0594eade-5a1c-4cdd-acc3-6a4e8f830156 directory successfully created\n2024-06-27 09:46:24,902 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/structure.stripped.trj to /tmp/biobb/unitests_186/biobb_curves/sandbox_0594eade-5a1c-4cdd-acc3-6a4e8f830156\n2024-06-27 09:46:24,903 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/structure.stripped.top to /tmp/biobb/unitests_186/biobb_curves/sandbox_0594eade-5a1c-4cdd-acc3-6a4e8f830156\n2024-06-27 09:46:24,904 [MainThread  ] [INFO ]  Appending provided topology to command\n2024-06-27 09:46:24,904 [MainThread  ] [INFO ]  Creating command line with instructions and required arguments\n2024-06-27 09:46:24,904 [MainThread  ] [INFO ]  Cur+ &amp;lt;&amp;lt;! \n&amp;amp;inp\n  file=structure.stripped.trj,\n  ftop=structure.stripped.top,\n  lis=&amp;#x27;curves_output&amp;#x27;,\n  lib=.curvesplus/standard,\n  ions=.t.,\n  test=.f.,\n  line=.f.,\n  fit=.t.,\n  axfrm=.f.,\n  itst=0,itnd=0,itdel=1,\n&amp;amp;end\n2 1 -1 0 0\n1:12\n24:13\n!\n\n2024-06-27 09:46:32,415 [MainThread  ] [INFO ]  Exit code 0\n\n2024-06-27 09:46:32,456 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/biobb_curves/sandbox_0594eade-5a1c-4cdd-acc3-6a4e8f830156&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/biobb_curves/curves_output.cda\nChecking if empty file: /tmp/biobb/unitests_186/biobb_curves/curves_output.lis\nChecking if empty file: /tmp/biobb/unitests_186/biobb_curves/curves_output.zip\nComparing ignoring lines containing this words: [2]\n     FILE_A: /tmp/biobb/unitests_186/biobb_curves/curves_output.lis\n     FILE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/curvesplus/curves_trj_output.lis\nThis is a ZIP comparison!\nUnzipping:\nCreating a unique_dir for: /tmp/biobb/unitests_186/biobb_curves/curves_output.zip\nCreating a unique_dir for: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/curvesplus/curves_trj_output.zip\nComparing: \n        File_A: 2920ea57-7809-46e2-a07b-6976058c3106/curves_output.cdi\n        File_B: 6b950f16-e2e6-4a7a-89b7-05dfe167f394/curves_output.cdi\n        File_A hash: b&amp;#x27;\\xbf\\x13\\x93\\xa0\\xc8\\xba\\x96\\xaa\\xd5sy\\xda\\x0f\\xe1m|\\xab\\xd4\\x9c z\\x9a\\x9d\\xde\\x07\\x7f\\xe3\\x1c\\x0cf_h&amp;#x27;\n        File_B hash: b&amp;#x27;\\xbf\\x13\\x93\\xa0\\xc8\\xba\\x96\\xaa\\xd5sy\\xda\\x0f\\xe1m|\\xab\\xd4\\x9c z\\x9a\\x9d\\xde\\x07\\x7f\\xe3\\x1c\\x0cf_h&amp;#x27;\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:file_utils.py:391 Executing biobb_dna.curvesplus.biobb_curves Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:file_utils.py:82 /tmp/biobb/unitests_186/biobb_curves/sandbox_0594eade-5a1c-4cdd-acc3-6a4e8f830156 directory successfully created\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/structure.stripped.trj to /tmp/biobb/unitests_186/biobb_curves/sandbox_0594eade-5a1c-4cdd-acc3-6a4e8f830156\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/curvesplus/structure.stripped.top to /tmp/biobb/unitests_186/biobb_curves/sandbox_0594eade-5a1c-4cdd-acc3-6a4e8f830156\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:file_utils.py:391 Appending provided topology to command\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:file_utils.py:391 Creating command line with instructions and required arguments\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:cmd_wrapper.py:33 Cur+ &amp;lt;&amp;lt;! \n&amp;amp;inp\n  file=structure.stripped.trj,\n  ftop=structure.stripped.top,\n  lis=&amp;#x27;curves_output&amp;#x27;,\n  lib=.curvesplus/standard,\n  ions=.t.,\n  test=.f.,\n  line=.f.,\n  fit=.t.,\n  axfrm=.f.,\n  itst=0,itnd=0,itdel=1,\n&amp;amp;end\n2 1 -1 0 0\n1:12\n24:13\n!\n\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_186/biobb_curves/biobb_curves_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/biobb_curves/sandbox_0594eade-5a1c-4cdd-acc3-6a4e8f830156&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_dna/test_averages.py::TestAverages::test_helparaverages&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_dna/test_averages.py::TestAverages::test_helparaverages&#34;, &#34;duration&#34;: &#34;235 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_dna/test_averages.py::TestAverages::test_helparaverages&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;235 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:32,557 [MainThread  ] [INFO ]  Executing biobb_dna.dna.dna_averages Version: 4.2.3\n2024-06-27 09:46:32,557 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/dna_averages/sandbox_58c5d8bc-9248-4e80-8f14-018f77955fa0 directory successfully created\n2024-06-27 09:46:32,558 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/canal_output_shift.ser to /tmp/biobb/unitests_186/dna_averages/sandbox_58c5d8bc-9248-4e80-8f14-018f77955fa0\n2024-06-27 09:46:32,710 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/dna_averages/sandbox_58c5d8bc-9248-4e80-8f14-018f77955fa0&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/dna_averages/avg_out.csv\nChecking if empty file: /tmp/biobb/unitests_186/dna_averages/avg_out.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_186/dna_averages/avg_out.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/dna/shift_avg.jpg\n     IMAGE_A HASH: c07e3e32163f3ee3 SIZE: 64 bits\n     IMAGE_B HASH: c07e3e32163f3ee3 SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/dna_averages/dna_averages_log.out:file_utils.py:391 Executing biobb_dna.dna.dna_averages Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/dna_averages/dna_averages_log.out:file_utils.py:82 /tmp/biobb/unitests_186/dna_averages/sandbox_58c5d8bc-9248-4e80-8f14-018f77955fa0 directory successfully created\nINFO     /tmp/biobb/unitests_186/dna_averages/dna_averages_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/canal_output_shift.ser to /tmp/biobb/unitests_186/dna_averages/sandbox_58c5d8bc-9248-4e80-8f14-018f77955fa0\nINFO     /tmp/biobb/unitests_186/dna_averages/dna_averages_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/dna_averages/sandbox_58c5d8bc-9248-4e80-8f14-018f77955fa0&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_dna/test_bimodality.py::TestBimodality::test_helparbimodality&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_dna/test_bimodality.py::TestBimodality::test_helparbimodality&#34;, &#34;duration&#34;: &#34;422 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_dna/test_bimodality.py::TestBimodality::test_helparbimodality&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;422 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:32,792 [MainThread  ] [INFO ]  Executing biobb_dna.dna.dna_bimodality Version: 4.2.3\n2024-06-27 09:46:32,792 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/dna_bimodality/sandbox_1f4e48ad-8c53-4e1d-aaa4-d2ab4c81266b directory successfully created\n2024-06-27 09:46:32,792 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/series_shift_AT.csv to /tmp/biobb/unitests_186/dna_bimodality/sandbox_1f4e48ad-8c53-4e1d-aaa4-d2ab4c81266b\n2024-06-27 09:46:33,168 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/dna_bimodality/sandbox_1f4e48ad-8c53-4e1d-aaa4-d2ab4c81266b&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/dna_bimodality/bimod_out.csv\nChecking if empty file: /tmp/biobb/unitests_186/dna_bimodality/bimod_out.jpg\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/dna_bimodality/dna_bimodality_log.out:file_utils.py:391 Executing biobb_dna.dna.dna_bimodality Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/dna_bimodality/dna_bimodality_log.out:file_utils.py:82 /tmp/biobb/unitests_186/dna_bimodality/sandbox_1f4e48ad-8c53-4e1d-aaa4-d2ab4c81266b directory successfully created\nINFO     /tmp/biobb/unitests_186/dna_bimodality/dna_bimodality_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/series_shift_AT.csv to /tmp/biobb/unitests_186/dna_bimodality/sandbox_1f4e48ad-8c53-4e1d-aaa4-d2ab4c81266b\nINFO     /tmp/biobb/unitests_186/dna_bimodality/dna_bimodality_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/dna_bimodality/sandbox_1f4e48ad-8c53-4e1d-aaa4-d2ab4c81266b&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_dna/test_timeseries.py::TestTimeSeries::test_helpartimeseries&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_dna/test_timeseries.py::TestTimeSeries::test_helpartimeseries&#34;, &#34;duration&#34;: &#34;00:00:04&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_dna/test_timeseries.py::TestTimeSeries::test_helpartimeseries&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:04&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:33,217 [MainThread  ] [INFO ]  Executing biobb_dna.dna.dna_timeseries Version: 4.2.3\n2024-06-27 09:46:33,218 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/dna_timeseries/sandbox_14dfc44c-e7b5-4786-98d8-cd0d26132b25 directory successfully created\n2024-06-27 09:46:33,219 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/canal_output_shift.ser to /tmp/biobb/unitests_186/dna_timeseries/sandbox_14dfc44c-e7b5-4786-98d8-cd0d26132b25\n2024-06-27 09:46:37,582 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/dna_timeseries/sandbox_14dfc44c-e7b5-4786-98d8-cd0d26132b25&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/dna_timeseries/timeseries_output.zip\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/dna_timeseries/dna_timeseries_log.out:file_utils.py:391 Executing biobb_dna.dna.dna_timeseries Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/dna_timeseries/dna_timeseries_log.out:file_utils.py:82 /tmp/biobb/unitests_186/dna_timeseries/sandbox_14dfc44c-e7b5-4786-98d8-cd0d26132b25 directory successfully created\nINFO     /tmp/biobb/unitests_186/dna_timeseries/dna_timeseries_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/canal_output_shift.ser to /tmp/biobb/unitests_186/dna_timeseries/sandbox_14dfc44c-e7b5-4786-98d8-cd0d26132b25\nINFO     /tmp/biobb/unitests_186/dna_timeseries/dna_timeseries_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/dna_timeseries/sandbox_14dfc44c-e7b5-4786-98d8-cd0d26132b25&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py::TestCanalUnzip::test_dna_timeseries_unzip&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py::TestCanalUnzip::test_dna_timeseries_unzip&#34;, &#34;duration&#34;: &#34;83 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py::TestCanalUnzip::test_dna_timeseries_unzip&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;83 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:37,629 [MainThread  ] [INFO ]  Executing biobb_dna.dna.dna_timeseries_unzip Version: 4.2.3\n2024-06-27 09:46:37,629 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156 directory successfully created\n2024-06-27 09:46:37,631 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/timeseries_output.zip to /tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156\n2024-06-27 09:46:37,631 [MainThread  ] [INFO ]  hist_shift_6_AT.csv exists, copying into /tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156/dna_timeseries_unzip.csv.\n2024-06-27 09:46:37,632 [MainThread  ] [INFO ]  hist_shift_6_AT.jpg exists, copying into /tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156/dna_timeseries_unzip.jpg.\n2024-06-27 09:46:37,633 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip.csv\nChecking if empty file: /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip.jpg\nChecking if empty file: /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip.txt\nComparing: \n        File_A: /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip.csv\n        File_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/dna/dna_timeseries_unzip.csv\n        File_A hash: b&amp;#x27;\\xa2W\\xf05tAU\\xa7\\x93\\xe2\\x12L\\xddq\\x86\\xcdN\\xf8\\xd6\\xf6\\x0cO\\x0bJu\\xa8\\tRO\\xc0lH&amp;#x27;\n        File_B hash: b&amp;#x27;\\xa2W\\xf05tAU\\xa7\\x93\\xe2\\x12L\\xddq\\x86\\xcdN\\xf8\\xd6\\xf6\\x0cO\\x0bJu\\xa8\\tRO\\xc0lH&amp;#x27;\nComparing: \n        File_A: /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip.txt\n        File_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/dna/dna_timeseries_unzip.txt\n        File_A hash: b&amp;#x27;O\\xeeQ\\xcb\\xd3T\\xf3\\x9e\\xbc\\xa6\\xcb\\xd8\\xb6F\\x12r\\x12\\xb4I.\\xf9\\xa6/e}\\x85\\xf9\\x18\\x06\\xe18\\xd4&amp;#x27;\n        File_B hash: b&amp;#x27;O\\xeeQ\\xcb\\xd3T\\xf3\\x9e\\xbc\\xa6\\xcb\\xd8\\xb6F\\x12r\\x12\\xb4I.\\xf9\\xa6/e}\\x85\\xf9\\x18\\x06\\xe18\\xd4&amp;#x27;\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/dna/dna_timeseries_unzip.jpg\n     IMAGE_A HASH: ffe7e7e7e7e3c3ff SIZE: 64 bits\n     IMAGE_B HASH: ffe7e7e7e7e3c3ff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 Executing biobb_dna.dna.dna_timeseries_unzip Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:82 /tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156 directory successfully created\nINFO     /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/dna/timeseries_output.zip to /tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156\nINFO     /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 hist_shift_6_AT.csv exists, copying into /tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156/dna_timeseries_unzip.csv.\nINFO     /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 hist_shift_6_AT.jpg exists, copying into /tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156/dna_timeseries_unzip.jpg.\nINFO     /tmp/biobb/unitests_186/dna_timeseries_unzip/dna_timeseries_unzip_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/dna_timeseries_unzip/sandbox_f9cd1698-a3f9-4ee7-98db-674be93b5156&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestAvgStiffness::test_averagestiffness&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestAvgStiffness::test_averagestiffness&#34;, &#34;duration&#34;: &#34;250 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestAvgStiffness::test_averagestiffness&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;250 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:37,714 [MainThread  ] [INFO ]  Executing biobb_dna.stiffness.average_stiffness Version: 4.2.3\n2024-06-27 09:46:37,714 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/average_stiffness/sandbox_2153118c-e2e8-44f7-bb45-5795f9578263 directory successfully created\n2024-06-27 09:46:37,715 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/canal_output_roll.ser to /tmp/biobb/unitests_186/average_stiffness/sandbox_2153118c-e2e8-44f7-bb45-5795f9578263\n2024-06-27 09:46:37,884 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_186/average_stiffness/sandbox_2153118c-e2e8-44f7-bb45-5795f9578263&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_186/average_stiffness/avgstiff.csv\nChecking if empty file: /tmp/biobb/unitests_186/average_stiffness/avgstiff.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_186/average_stiffness/avgstiff.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/stiffness/stiffavg_roll.jpg\n     IMAGE_A HASH: 017f7f7f1d7f7e80 SIZE: 64 bits\n     IMAGE_B HASH: 017f7f7f1d7f7e80 SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/average_stiffness/average_stiffness_log.out:file_utils.py:391 Executing biobb_dna.stiffness.average_stiffness Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/average_stiffness/average_stiffness_log.out:file_utils.py:82 /tmp/biobb/unitests_186/average_stiffness/sandbox_2153118c-e2e8-44f7-bb45-5795f9578263 directory successfully created\nINFO     /tmp/biobb/unitests_186/average_stiffness/average_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/canal_output_roll.ser to /tmp/biobb/unitests_186/average_stiffness/sandbox_2153118c-e2e8-44f7-bb45-5795f9578263\nINFO     /tmp/biobb/unitests_186/average_stiffness/average_stiffness_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_186/average_stiffness/sandbox_2153118c-e2e8-44f7-bb45-5795f9578263&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}], &#34;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestBasePairStiffness::test_basepairstiffness&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestBasePairStiffness::test_basepairstiffness&#34;, &#34;duration&#34;: &#34;259 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_dna/test/unitests/test_stiffness/test_stiffness.py::TestBasePairStiffness::test_basepairstiffness&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;259 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-06-27 09:46:37,966 [MainThread  ] [INFO ]  Executing biobb_dna.stiffness.basepair_stiffness Version: 4.2.3\n2024-06-27 09:46:37,966 [MainThread  ] [INFO ]  /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f directory successfully created\n2024-06-27 09:46:37,966 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_shift_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\n2024-06-27 09:46:37,967 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_slide_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\n2024-06-27 09:46:37,967 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_rise_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\n2024-06-27 09:46:37,967 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_tilt_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\n2024-06-27 09:46:37,967 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_roll_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\n2024-06-27 09:46:37,968 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_twist_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\nChecking if empty file: /tmp/biobb/unitests_186/basepair_stiffness/bpstiff.csv\nChecking if empty file: /tmp/biobb/unitests_186/basepair_stiffness/bpstiff.jpg\nComparing images of both files:\n     IMAGE_A: /tmp/biobb/unitests_186/basepair_stiffness/bpstiff.jpg\n     IMAGE_B: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/reference/stiffness/stiffbp_ref.jpg\n     IMAGE_A HASH: ff8080909080ffff SIZE: 64 bits\n     IMAGE_B HASH: ff8080909080ffff SIZE: 64 bits\n     TOLERANCE: 1.0%, ABS TOLERANCE: 1 bits, DIFFERENCE: 0 bits\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_186/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Executing biobb_dna.stiffness.basepair_stiffness Version: 4.2.3\nINFO     /tmp/biobb/unitests_186/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:82 /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f directory successfully created\nINFO     /tmp/biobb/unitests_186/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_shift_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\nINFO     /tmp/biobb/unitests_186/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_slide_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\nINFO     /tmp/biobb/unitests_186/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_rise_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\nINFO     /tmp/biobb/unitests_186/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_tilt_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\nINFO     /tmp/biobb/unitests_186/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_roll_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\nINFO     /tmp/biobb/unitests_186/basepair_stiffness/basepair_stiffness_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_dna/biobb_dna/biobb_dna/test/data/stiffness/series_twist_AA.csv to /tmp/biobb/unitests_186/basepair_stiffness/sandbox_ab1117ac-b84c-4563-8777-7def10bc612f\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_186\n&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
     <script>
       (function(){function r(e,n,t){function o(i,f){if(!n[i]){if(!e[i]){var c="function"==typeof require&&require;if(!f&&c)return c(i,!0);if(u)return u(i,!0);var a=new Error("Cannot find module '"+i+"'");throw a.code="MODULE_NOT_FOUND",a}var p=n[i]={exports:{}};e[i][0].call(p.exports,function(r){var n=e[i][1][r];return o(n||r)},p,p.exports,r,e,n,t)}return n[i].exports}for(var u="function"==typeof require&&require,i=0;i<t.length;i++)o(t[i]);return o}return r})()({1:[function(require,module,exports){
 const { getCollapsedCategory, setCollapsedIds } = require('./storage.js')