From b40edc948d9c05446a453381a4449eccb379da8a Mon Sep 17 00:00:00 2001
From: PauAndrio <andriopau@gmail.com>
Date: Mon, 4 Nov 2024 15:14:12 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20bioexcel?=
 =?UTF-8?q?/biobb=5Fgodmd@fff0d8fa8e604875bf3ad9c95b2d20b14b9be68a=20?=
 =?UTF-8?q?=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 coverage/class_index.html                           | 4 ++--
 coverage/coverage.xml                               | 2 +-
 coverage/function_index.html                        | 4 ++--
 coverage/index.html                                 | 4 ++--
 coverage/z_1594175cfefe9933___init___py.html        | 4 ++--
 coverage/z_b3ec5c7564c25379_test_godmd_prep_py.html | 4 ++--
 coverage/z_b3ec5c7564c25379_test_godmd_run_py.html  | 4 ++--
 coverage/z_c296ee536f0b791d___init___py.html        | 4 ++--
 coverage/z_c296ee536f0b791d_common_py.html          | 4 ++--
 coverage/z_c296ee536f0b791d_godmd_prep_py.html      | 4 ++--
 coverage/z_c296ee536f0b791d_godmd_run_py.html       | 4 ++--
 flake8/index.html                                   | 2 +-
 junit/junit.xml                                     | 2 +-
 junit/report.html                                   | 4 ++--
 14 files changed, 25 insertions(+), 25 deletions(-)

diff --git a/coverage/class_index.html b/coverage/class_index.html
index 1da8999..8eb0917 100644
--- a/coverage/class_index.html
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index 05833ac..a0c3004 100644
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+++ b/coverage/coverage.xml
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index a64ba12..2ee29f0 100644
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diff --git a/coverage/index.html b/coverage/index.html
index b0faa79..6c03f28 100644
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index 75de93a..61e7ae7 100644
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index 795e674..43d2b0e 100644
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index 0bb189b..f0409e8 100644
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diff --git a/flake8/index.html b/flake8/index.html
index 69a34ca..c7b6bee 100644
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index 18e9836..3851b42 100644
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index 0503201..26a3dc8 100644
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/home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1\n2024-11-04 15:11:53,404 [MainThread  ] [INFO ]  water -auto -outfile /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1/water_align.out -asequence /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1/fasta1.fa -bsequence /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1/fasta2.fa -gapopen 12.0 -gapextend 2 -datafile EPAM250 -aformat markx10\n\n2024-11-04 15:11:53,420 [MainThread  ] [INFO ]  Executing: water -auto -outfile /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a8...\n2024-11-04 15:11:53,421 [MainThread  ] [INFO ]  Exit code: 0\n2024-11-04 15:11:53,422 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1&amp;#x27;]\n2024-11-04 15:11:53,422 [MainThread  ] [INFO ]  \nChecking if empty file: /tmp/biobb/unitests_33/godmd_prep/godmd_orig.aln\nChecking if empty file: /tmp/biobb/unitests_33/godmd_prep/godmd_target.aln\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:file_utils.py:409 Module: biobb_godmd.godmd.godmd_prep Version: 4.2.0\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:file_utils.py:82 /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1 directory successfully created\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:63 water -auto -outfile /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1/water_align.out -asequence /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1/fasta1.fa -bsequence /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1/fasta2.fa -gapopen 12.0 -gapextend 2 -datafile EPAM250 -aformat markx10\n\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:36 Executing: water -auto -outfile /tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a8...\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:37 Exit code: 0\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:file_utils.py:409 Removed: [&amp;#x27;/tmp/biobb/unitests_33/godmd_prep/sandbox_637ddfc5-a978-4a88-874d-1bf74216b8c1&amp;#x27;]\nINFO     /tmp/biobb/unitests_33/godmd_prep/godmd_prep_log.out:file_utils.py:409\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_33\n&#34;}], &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&#34;, &#34;duration&#34;: &#34;00:00:15&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:15&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-11-04 15:11:53,449 [MainThread  ] [INFO ]  Module: biobb_godmd.godmd.godmd_run Version: 4.2.0\n2024-11-04 15:11:53,449 [MainThread  ] [INFO ]  /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d directory successfully created\n2024-11-04 15:11:53,449 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\n2024-11-04 15:11:53,450 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\n2024-11-04 15:11:53,450 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.aln to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\n2024-11-04 15:11:53,450 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.aln to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\n2024-11-04 15:11:53,450 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/params.in to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\n2024-11-04 15:11:53,451 [MainThread  ] [INFO ]  cd /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d ; discrete -i godmd.in -pdbin 1ake_A.pdb -pdbtarg 4ake_A.pdb -p1 1ake_A.aln -p2 4ake_A.aln -o godmd.log -ener godmd_ene.out -trj godmd_trj.mdcrd\n\n2024-11-04 15:12:08,429 [MainThread  ] [INFO ]  Executing: cd /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d...\n2024-11-04 15:12:08,429 [MainThread  ] [INFO ]  Exit code: 0\n2024-11-04 15:12:08,431 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d&amp;#x27;]\n2024-11-04 15:12:08,432 [MainThread  ] [INFO ]  \nChecking if empty file: /tmp/biobb/unitests_33/godmd_run/godmd.log\nChecking if empty file: /tmp/biobb/unitests_33/godmd_run/godmd_ene.out\nChecking if empty file: /tmp/biobb/unitests_33/godmd_run/godmd_trj.mdcrd\nChecking if empty file: /tmp/biobb/unitests_33/godmd_run/godmd_pdb.pdb\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:409 Module: biobb_godmd.godmd.godmd_run Version: 4.2.0\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:82 /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d directory successfully created\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.aln to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.aln to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/params.in to /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:cmd_wrapper.py:63 cd /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d ; discrete -i godmd.in -pdbin 1ake_A.pdb -pdbtarg 4ake_A.pdb -p1 1ake_A.aln -p2 4ake_A.aln -o godmd.log -ener godmd_ene.out -trj godmd_trj.mdcrd\n\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:cmd_wrapper.py:36 Executing: cd /tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d...\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:cmd_wrapper.py:37 Exit code: 0\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:409 Removed: [&amp;#x27;/tmp/biobb/unitests_33/godmd_run/sandbox_f7e9d453-24ca-4b9d-9855-c2df9681234d&amp;#x27;]\nINFO     /tmp/biobb/unitests_33/godmd_run/godmd_run_log.out:file_utils.py:409\n\n&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
+    <div id="data-container" data-jsonblob="{&#34;environment&#34;: {&#34;Python&#34;: &#34;3.9.20&#34;, &#34;Platform&#34;: &#34;Linux-5.4.0-200-generic-x86_64-with-glibc2.31&#34;, &#34;Packages&#34;: {&#34;pytest&#34;: &#34;8.3.3&#34;, &#34;pluggy&#34;: &#34;1.5.0&#34;}, &#34;Plugins&#34;: {&#34;metadata&#34;: &#34;3.1.1&#34;, &#34;cov&#34;: &#34;6.0.0&#34;, &#34;html&#34;: &#34;4.1.1&#34;}, &#34;CI&#34;: &#34;true&#34;}, &#34;tests&#34;: {&#34;biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py::TestGOdMDPrep::test_godmd_prep&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py::TestGOdMDPrep::test_godmd_prep&#34;, &#34;duration&#34;: &#34;42 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py::TestGOdMDPrep::test_godmd_prep&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;42 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-11-04 15:13:54,233 [MainThread  ] [INFO ]  Module: biobb_godmd.godmd.godmd_prep Version: 4.2.0\n2024-11-04 15:13:54,234 [MainThread  ] [INFO ]  /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe directory successfully created\n2024-11-04 15:13:54,234 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe\n2024-11-04 15:13:54,235 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe\n2024-11-04 15:13:54,239 [MainThread  ] [INFO ]  water -auto -outfile /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe/water_align.out -asequence /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe/fasta1.fa -bsequence /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe/fasta2.fa -gapopen 12.0 -gapextend 2 -datafile EPAM250 -aformat markx10\n\n2024-11-04 15:13:54,258 [MainThread  ] [INFO ]  Executing: water -auto -outfile /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd...\n2024-11-04 15:13:54,259 [MainThread  ] [INFO ]  Exit code: 0\n2024-11-04 15:13:54,260 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe&amp;#x27;]\n2024-11-04 15:13:54,261 [MainThread  ] [INFO ]  \nChecking if empty file: /tmp/biobb/unitests_34/godmd_prep/godmd_orig.aln\nChecking if empty file: /tmp/biobb/unitests_34/godmd_prep/godmd_target.aln\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:file_utils.py:409 Module: biobb_godmd.godmd.godmd_prep Version: 4.2.0\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:file_utils.py:82 /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe directory successfully created\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:63 water -auto -outfile /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe/water_align.out -asequence /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe/fasta1.fa -bsequence /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe/fasta2.fa -gapopen 12.0 -gapextend 2 -datafile EPAM250 -aformat markx10\n\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:36 Executing: water -auto -outfile /tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd...\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:37 Exit code: 0\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:file_utils.py:409 Removed: [&amp;#x27;/tmp/biobb/unitests_34/godmd_prep/sandbox_50eecd04-e480-4cd9-9891-7bf4f45d3cbe&amp;#x27;]\nINFO     /tmp/biobb/unitests_34/godmd_prep/godmd_prep_log.out:file_utils.py:409\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_34\n&#34;}], &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&#34;, &#34;duration&#34;: &#34;00:00:15&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:15&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-11-04 15:13:54,300 [MainThread  ] [INFO ]  Module: biobb_godmd.godmd.godmd_run Version: 4.2.0\n2024-11-04 15:13:54,300 [MainThread  ] [INFO ]  /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e directory successfully created\n2024-11-04 15:13:54,301 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\n2024-11-04 15:13:54,301 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\n2024-11-04 15:13:54,301 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.aln to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\n2024-11-04 15:13:54,302 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.aln to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\n2024-11-04 15:13:54,302 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/params.in to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\n2024-11-04 15:13:54,302 [MainThread  ] [INFO ]  cd /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e ; discrete -i godmd.in -pdbin 1ake_A.pdb -pdbtarg 4ake_A.pdb -p1 1ake_A.aln -p2 4ake_A.aln -o godmd.log -ener godmd_ene.out -trj godmd_trj.mdcrd\n\n2024-11-04 15:14:09,382 [MainThread  ] [INFO ]  Executing: cd /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e...\n2024-11-04 15:14:09,382 [MainThread  ] [INFO ]  Exit code: 0\n2024-11-04 15:14:09,384 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e&amp;#x27;]\n2024-11-04 15:14:09,385 [MainThread  ] [INFO ]  \nChecking if empty file: /tmp/biobb/unitests_34/godmd_run/godmd.log\nChecking if empty file: /tmp/biobb/unitests_34/godmd_run/godmd_ene.out\nChecking if empty file: /tmp/biobb/unitests_34/godmd_run/godmd_trj.mdcrd\nChecking if empty file: /tmp/biobb/unitests_34/godmd_run/godmd_pdb.pdb\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:409 Module: biobb_godmd.godmd.godmd_run Version: 4.2.0\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:82 /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e directory successfully created\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.aln to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.aln to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:409 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/params.in to /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:cmd_wrapper.py:63 cd /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e ; discrete -i godmd.in -pdbin 1ake_A.pdb -pdbtarg 4ake_A.pdb -p1 1ake_A.aln -p2 4ake_A.aln -o godmd.log -ener godmd_ene.out -trj godmd_trj.mdcrd\n\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:cmd_wrapper.py:36 Executing: cd /tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e...\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:cmd_wrapper.py:37 Exit code: 0\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:409 Removed: [&amp;#x27;/tmp/biobb/unitests_34/godmd_run/sandbox_06a7587e-ea01-4698-95c7-dff58b71094e&amp;#x27;]\nINFO     /tmp/biobb/unitests_34/godmd_run/godmd_run_log.out:file_utils.py:409\n\n&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
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