diff --git a/coverage/class_index.html b/coverage/class_index.html
index ea17aed..8f8ccc8 100644
--- a/coverage/class_index.html
+++ b/coverage/class_index.html
@@ -5,13 +5,13 @@
     <title>Coverage report</title>
     <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
     <link rel="stylesheet" href="style_cb_8e611ae1.css" type="text/css">
-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
 </head>
 <body class="indexfile">
 <header>
     <div class="content">
         <h1>Coverage report:
-            <span class="pc_cov">92%</span>
+            <span class="pc_cov">91%</span>
         </h1>
         <aside id="help_panel_wrapper">
             <input id="help_panel_state" type="checkbox">
@@ -54,8 +54,8 @@ <h2>
                 <a class="button current">Classes</a>
         </h2>
         <p class="text">
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
         </p>
     </div>
 </header>
@@ -107,10 +107,10 @@ <h2>
             <tr class="region">
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                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_prep_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
-                <td>19</td>
+                <td>18</td>
                 <td>1</td>
                 <td>0</td>
-                <td class="right" data-ratio="18 19">95%</td>
+                <td class="right" data-ratio="17 18">94%</td>
             </tr>
             <tr class="region">
                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_run_py.html#t14">biobb_godmd/godmd/godmd_run.py</a></td>
@@ -123,10 +123,10 @@ <h2>
             <tr class="region">
                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_run_py.html">biobb_godmd/godmd/godmd_run.py</a></td>
                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_run_py.html"><data value=''><span class='no-noun'>(no class)</span></data></a></td>
-                <td>19</td>
+                <td>18</td>
                 <td>1</td>
                 <td>0</td>
-                <td class="right" data-ratio="18 19">95%</td>
+                <td class="right" data-ratio="17 18">94%</td>
             </tr>
             <tr class="region">
                 <td class="name left"><a href="z_b3ec5c7564c25379_test_godmd_prep_py.html#t5">biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py</a></td>
@@ -165,10 +165,10 @@ <h2>
             <tr class="total">
                 <td class="name left">Total</td>
                 <td class="name left">&nbsp;</td>
-                <td>260</td>
+                <td>258</td>
                 <td>22</td>
                 <td>0</td>
-                <td class="right" data-ratio="238 260">92%</td>
+                <td class="right" data-ratio="236 258">91%</td>
             </tr>
         </tfoot>
     </table>
@@ -179,8 +179,8 @@ <h2>
 <footer>
     <div class="content">
         <p>
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
         </p>
     </div>
     <aside class="hidden">
diff --git a/coverage/coverage.xml b/coverage/coverage.xml
index cc17928..2a0a7ae 100644
--- a/coverage/coverage.xml
+++ b/coverage/coverage.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" ?>
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-	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.5.1 -->
+<coverage version="7.5.2" timestamp="1716887929766" lines-valid="310" lines-covered="250" line-rate="0.8065" branches-covered="0" branches-valid="0" branch-rate="0" complexity="0">
+	<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.5.2 -->
 	<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
 	<sources>
 		<source>/home/user/actions-runner/_work/biobb_godmd/biobb_godmd</source>
@@ -18,7 +18,7 @@
 				</class>
 			</classes>
 		</package>
-		<package name="biobb_godmd.godmd" line-rate="0.7895" branch-rate="0" complexity="0">
+		<package name="biobb_godmd.godmd" line-rate="0.788" branch-rate="0" complexity="0">
 			<classes>
 				<class name="__init__.py" filename="biobb_godmd/godmd/__init__.py" complexity="0" line-rate="1" branch-rate="0">
 					<methods/>
@@ -60,10 +60,9 @@
 						<line number="51" hits="1"/>
 					</lines>
 				</class>
-				<class name="godmd_prep.py" filename="biobb_godmd/godmd/godmd_prep.py" complexity="0" line-rate="0.8712" branch-rate="0">
+				<class name="godmd_prep.py" filename="biobb_godmd/godmd/godmd_prep.py" complexity="0" line-rate="0.8704" branch-rate="0">
 					<methods/>
 					<lines>
-						<line number="3" hits="1"/>
 						<line number="4" hits="1"/>
 						<line number="5" hits="1"/>
 						<line number="6" hits="1"/>
@@ -228,10 +227,9 @@
 						<line number="363" hits="0"/>
 					</lines>
 				</class>
-				<class name="godmd_run.py" filename="biobb_godmd/godmd/godmd_run.py" complexity="0" line-rate="0.6957" branch-rate="0">
+				<class name="godmd_run.py" filename="biobb_godmd/godmd/godmd_run.py" complexity="0" line-rate="0.6923" branch-rate="0">
 					<methods/>
 					<lines>
-						<line number="3" hits="1"/>
 						<line number="4" hits="1"/>
 						<line number="5" hits="1"/>
 						<line number="6" hits="1"/>
diff --git a/coverage/coverage_html_cb_da166b87.js b/coverage/coverage_html_cb_6fb7b396.js
similarity index 96%
rename from coverage/coverage_html_cb_da166b87.js
rename to coverage/coverage_html_cb_6fb7b396.js
index 0a859a5..1face13 100644
--- a/coverage/coverage_html_cb_da166b87.js
+++ b/coverage/coverage_html_cb_6fb7b396.js
@@ -125,6 +125,16 @@ coverage.assign_shortkeys = function () {
 
 // Create the events for the filter box.
 coverage.wire_up_filter = function () {
+    // Populate the filter and hide100 inputs if there are saved values for them.
+    const saved_filter_value = localStorage.getItem(coverage.FILTER_STORAGE);
+    if (saved_filter_value) {
+        document.getElementById("filter").value = saved_filter_value;
+    }
+    const saved_hide100_value = localStorage.getItem(coverage.HIDE100_STORAGE);
+    if (saved_hide100_value) {
+        document.getElementById("hide100").checked = JSON.parse(saved_hide100_value);
+    }
+
     // Cache elements.
     const table = document.querySelector("table.index");
     const table_body_rows = table.querySelectorAll("tbody tr");
@@ -138,8 +148,12 @@ coverage.wire_up_filter = function () {
         totals[totals.length - 1] = { "numer": 0, "denom": 0 };  // nosemgrep: eslint.detect-object-injection
 
         var text = document.getElementById("filter").value;
+        // Store filter value
+        localStorage.setItem(coverage.FILTER_STORAGE, text);
         const casefold = (text === text.toLowerCase());
         const hide100 = document.getElementById("hide100").checked;
+        // Store hide value.
+        localStorage.setItem(coverage.HIDE100_STORAGE, JSON.stringify(hide100));
 
         // Hide / show elements.
         table_body_rows.forEach(row => {
@@ -240,6 +254,8 @@ coverage.wire_up_filter = function () {
     document.getElementById("filter").dispatchEvent(new Event("input"));
     document.getElementById("hide100").dispatchEvent(new Event("input"));
 };
+coverage.FILTER_STORAGE = "COVERAGE_FILTER_VALUE";
+coverage.HIDE100_STORAGE = "COVERAGE_HIDE100_VALUE";
 
 // Set up the click-to-sort columns.
 coverage.wire_up_sorting = function () {
diff --git a/coverage/coveragebadge.svg b/coverage/coveragebadge.svg
index 314549c..0dd57e4 100644
--- a/coverage/coveragebadge.svg
+++ b/coverage/coveragebadge.svg
@@ -1 +1 @@
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\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" width="116" height="20" role="img" aria-label="Coverage: 80.65%"><title>Coverage: 80.65%</title><linearGradient id="s" x2="0" y2="100%"><stop offset="0" stop-color="#bbb" stop-opacity=".1"/><stop offset="1" stop-opacity=".1"/></linearGradient><clipPath id="r"><rect width="116" height="20" rx="3" fill="#fff"/></clipPath><g clip-path="url(#r)"><rect width="63" height="20" fill="#555"/><rect x="63" width="53" height="20" fill="#97ca00"/><rect width="116" height="20" fill="url(#s)"/></g><g fill="#fff" text-anchor="middle" font-family="Verdana,Geneva,DejaVu Sans,sans-serif" text-rendering="geometricPrecision" font-size="110"><text aria-hidden="true" x="325" y="150" fill="#010101" fill-opacity=".3" transform="scale(.1)" textLength="530">Coverage</text><text x="325" y="140" transform="scale(.1)" fill="#fff" textLength="530">Coverage</text><text aria-hidden="true" x="885" y="150" fill="#010101" fill-opacity=".3" transform="scale(.1)" textLength="430">80.65%</text><text x="885" y="140" transform="scale(.1)" fill="#fff" textLength="430">80.65%</text></g></svg>
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diff --git a/coverage/function_index.html b/coverage/function_index.html
index 86aef39..cab713f 100644
--- a/coverage/function_index.html
+++ b/coverage/function_index.html
@@ -5,7 +5,7 @@
     <title>Coverage report</title>
     <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
     <link rel="stylesheet" href="style_cb_8e611ae1.css" type="text/css">
-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
 </head>
 <body class="indexfile">
 <header>
@@ -54,8 +54,8 @@ <h2>
                 <a class="button" href="class_index.html">Classes</a>
         </h2>
         <p class="text">
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
         </p>
     </div>
 </header>
@@ -179,10 +179,10 @@ <h2>
             <tr class="region">
                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_prep_py.html">biobb_godmd/godmd/godmd_prep.py</a></td>
                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_prep_py.html"><data value=''><span class='no-noun'>(no function)</span></data></a></td>
-                <td>19</td>
+                <td>18</td>
                 <td>1</td>
                 <td>0</td>
-                <td class="right" data-ratio="18 19">95%</td>
+                <td class="right" data-ratio="17 18">94%</td>
             </tr>
             <tr class="region">
                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_run_py.html#t63">biobb_godmd/godmd/godmd_run.py</a></td>
@@ -235,10 +235,10 @@ <h2>
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                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_run_py.html"><data value=''><span class='no-noun'>(no function)</span></data></a></td>
-                <td>19</td>
+                <td>18</td>
                 <td>1</td>
                 <td>0</td>
-                <td class="right" data-ratio="18 19">95%</td>
+                <td class="right" data-ratio="17 18">94%</td>
             </tr>
             <tr class="region">
                 <td class="name left"><a href="z_b3ec5c7564c25379_test_godmd_prep_py.html#t6">biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py</a></td>
@@ -309,10 +309,10 @@ <h2>
             <tr class="total">
                 <td class="name left">Total</td>
                 <td class="name left">&nbsp;</td>
-                <td>312</td>
+                <td>310</td>
                 <td>60</td>
                 <td>0</td>
-                <td class="right" data-ratio="252 312">81%</td>
+                <td class="right" data-ratio="250 310">81%</td>
             </tr>
         </tfoot>
     </table>
@@ -323,8 +323,8 @@ <h2>
 <footer>
     <div class="content">
         <p>
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
         </p>
     </div>
     <aside class="hidden">
diff --git a/coverage/index.html b/coverage/index.html
index 7c65952..a3e78d3 100644
--- a/coverage/index.html
+++ b/coverage/index.html
@@ -5,7 +5,7 @@
     <title>Coverage report</title>
     <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
     <link rel="stylesheet" href="style_cb_8e611ae1.css" type="text/css">
-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
 </head>
 <body class="indexfile">
 <header>
@@ -53,8 +53,8 @@ <h2>
                 <a class="button" href="class_index.html">Classes</a>
         </h2>
         <p class="text">
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
         </p>
     </div>
 </header>
@@ -93,17 +93,17 @@ <h2>
             </tr>
             <tr class="region">
                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_prep_py.html">biobb_godmd/godmd/godmd_prep.py</a></td>
-                <td>163</td>
+                <td>162</td>
                 <td>21</td>
                 <td>0</td>
-                <td class="right" data-ratio="142 163">87%</td>
+                <td class="right" data-ratio="141 162">87%</td>
             </tr>
             <tr class="region">
                 <td class="name left"><a href="z_c296ee536f0b791d_godmd_run_py.html">biobb_godmd/godmd/godmd_run.py</a></td>
-                <td>92</td>
+                <td>91</td>
                 <td>28</td>
                 <td>0</td>
-                <td class="right" data-ratio="64 92">70%</td>
+                <td class="right" data-ratio="63 91">69%</td>
             </tr>
             <tr class="region">
                 <td class="name left"><a href="z_b3ec5c7564c25379_test_godmd_prep_py.html">biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py</a></td>
@@ -123,10 +123,10 @@ <h2>
         <tfoot>
             <tr class="total">
                 <td class="name left">Total</td>
-                <td>312</td>
+                <td>310</td>
                 <td>60</td>
                 <td>0</td>
-                <td class="right" data-ratio="252 312">81%</td>
+                <td class="right" data-ratio="250 310">81%</td>
             </tr>
         </tfoot>
     </table>
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 <footer>
     <div class="content">
         <p>
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
         </p>
     </div>
     <aside class="hidden">
diff --git a/coverage/status.json b/coverage/status.json
index e9ebbbf..465640f 100644
--- a/coverage/status.json
+++ b/coverage/status.json
@@ -1 +1 @@
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index c3c3473..acfdede 100644
--- a/coverage/z_1594175cfefe9933___init___py.html
+++ b/coverage/z_1594175cfefe9933___init___py.html
@@ -5,7 +5,7 @@
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-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
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--- a/coverage/z_b3ec5c7564c25379_test_godmd_prep_py.html
+++ b/coverage/z_b3ec5c7564c25379_test_godmd_prep_py.html
@@ -5,7 +5,7 @@
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-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
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 <header>
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             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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diff --git a/coverage/z_b3ec5c7564c25379_test_godmd_run_py.html b/coverage/z_b3ec5c7564c25379_test_godmd_run_py.html
index 8e5c4a0..ddac2f1 100644
--- a/coverage/z_b3ec5c7564c25379_test_godmd_run_py.html
+++ b/coverage/z_b3ec5c7564c25379_test_godmd_run_py.html
@@ -5,7 +5,7 @@
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-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
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-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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@@ -108,8 +108,8 @@ <h2>
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             <a class="nav" href="index.html">&#xbb; next</a>
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-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
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     </div>
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index f6a4c8f..3cf526a 100644
--- a/coverage/z_c296ee536f0b791d___init___py.html
+++ b/coverage/z_c296ee536f0b791d___init___py.html
@@ -5,7 +5,7 @@
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-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
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 <header>
@@ -64,8 +64,8 @@ <h2>
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             <a id="nextFileLink" class="nav" href="z_c296ee536f0b791d_common_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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             <a class="nav" href="z_c296ee536f0b791d_common_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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index a43983b..75d8711 100644
--- a/coverage/z_c296ee536f0b791d_common_py.html
+++ b/coverage/z_c296ee536f0b791d_common_py.html
@@ -5,7 +5,7 @@
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-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
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 <header>
@@ -64,8 +64,8 @@ <h2>
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             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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@@ -139,8 +139,8 @@ <h2>
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             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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     </div>
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diff --git a/coverage/z_c296ee536f0b791d_godmd_prep_py.html b/coverage/z_c296ee536f0b791d_godmd_prep_py.html
index 63649f5..745b630 100644
--- a/coverage/z_c296ee536f0b791d_godmd_prep_py.html
+++ b/coverage/z_c296ee536f0b791d_godmd_prep_py.html
@@ -5,7 +5,7 @@
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     <link rel="stylesheet" href="style_cb_8e611ae1.css" type="text/css">
-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
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-            <button type="button" class="run button_toggle_run" value="run" data-shortcut="r" title="Toggle lines run">142<span class="text"> run</span></button>
+            <span class="text">162 statements &nbsp;</span>
+            <button type="button" class="run button_toggle_run" value="run" data-shortcut="r" title="Toggle lines run">141<span class="text"> run</span></button>
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             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
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+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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     </div>
 </footer>
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index d478510..4f42721 100644
--- a/coverage/z_c296ee536f0b791d_godmd_run_py.html
+++ b/coverage/z_c296ee536f0b791d_godmd_run_py.html
@@ -2,17 +2,17 @@
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+    <title>Coverage for biobb_godmd/godmd/godmd_run.py: 69%</title>
     <link rel="icon" sizes="32x32" href="favicon_32_cb_58284776.png">
     <link rel="stylesheet" href="style_cb_8e611ae1.css" type="text/css">
-    <script src="coverage_html_cb_da166b87.js" defer></script>
+    <script src="coverage_html_cb_6fb7b396.js" defer></script>
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 <body class="pyfile">
 <header>
     <div class="content">
         <h1>
             <span class="text">Coverage for </span><b>biobb_godmd/godmd/godmd_run.py</b>:
-            <span class="pc_cov">70%</span>
+            <span class="pc_cov">69%</span>
         </h1>
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@@ -54,8 +54,8 @@ <h1>
             </div>
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         <h2>
-            <span class="text">92 statements &nbsp;</span>
-            <button type="button" class="run button_toggle_run" value="run" data-shortcut="r" title="Toggle lines run">64<span class="text"> run</span></button>
+            <span class="text">91 statements &nbsp;</span>
+            <button type="button" class="run button_toggle_run" value="run" data-shortcut="r" title="Toggle lines run">63<span class="text"> run</span></button>
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             <a id="nextFileLink" class="nav" href="z_b3ec5c7564c25379_test_godmd_prep_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
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     <p class="pln"><span class="n"><a id="t2" href="#t2">2</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
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+    <p class="pln"><span class="n"><a id="t3" href="#t3">3</a></span><span class="t"><span class="str">"""Module containing the GOdMDRun class and the command line interface."""</span>&nbsp;</span><span class="r"></span></p>
     <p class="run"><span class="n"><a id="t4" href="#t4">4</a></span><span class="t"><span class="key">import</span> <span class="nam">argparse</span>&nbsp;</span><span class="r"></span></p>
     <p class="run"><span class="n"><a id="t5" href="#t5">5</a></span><span class="t"><span class="key">import</span> <span class="nam">shutil</span>&nbsp;</span><span class="r"></span></p>
     <p class="run"><span class="n"><a id="t6" href="#t6">6</a></span><span class="t"><span class="key">from</span> <span class="nam">pathlib</span> <span class="key">import</span> <span class="nam">Path</span>&nbsp;</span><span class="r"></span></p>
@@ -350,8 +350,8 @@ <h2>
             <a class="nav" href="index.html">&Hat; index</a> &nbsp; &nbsp;
             <a class="nav" href="z_b3ec5c7564c25379_test_godmd_prep_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
-            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.1">coverage.py v7.5.1</a>,
-            created at 2024-05-24 10:38 +0000
+            <a class="nav" href="https://coverage.readthedocs.io/en/7.5.2">coverage.py v7.5.2</a>,
+            created at 2024-05-28 09:18 +0000
         </p>
     </div>
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diff --git a/flake8/index.html b/flake8/index.html
index c147395..5de45b3 100644
--- a/flake8/index.html
+++ b/flake8/index.html
@@ -9,7 +9,7 @@
       <div id="masthead" class="sev-4"></div>
       <div id="page">
           <h1>flake8 violations</h1>
-         <p id="versions">Generated on 2024-05-24 10:38
+         <p id="versions">Generated on 2024-05-28 09:18
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diff --git a/junit/junit.xml b/junit/junit.xml
index 9ece999..24a1789 100644
--- a/junit/junit.xml
+++ b/junit/junit.xml
@@ -1 +1 @@
-<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="2" time="16.236" timestamp="2024-05-24T10:38:30.030495" hostname="biobb-runners"><testcase classname="biobb_godmd.test.unitests.test_godmd.test_godmd_prep.TestGOdMDPrep" name="test_godmd_prep" time="0.040" /><testcase classname="biobb_godmd.test.unitests.test_godmd.test_godmd_run.TestGOdMDrun" name="test_godmd_run" time="15.882" /></testsuite></testsuites>
\ No newline at end of file
+<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="pytest" errors="0" failures="0" skipped="0" tests="2" time="15.941" timestamp="2024-05-28T09:18:30.421288" hostname="biobb-runners"><testcase classname="biobb_godmd.test.unitests.test_godmd.test_godmd_prep.TestGOdMDPrep" name="test_godmd_prep" time="0.060" /><testcase classname="biobb_godmd.test.unitests.test_godmd.test_godmd_run.TestGOdMDrun" name="test_godmd_run" time="15.564" /></testsuite></testsuites>
\ No newline at end of file
diff --git a/junit/report.html b/junit/report.html
index cbec593..6f00a7d 100644
--- a/junit/report.html
+++ b/junit/report.html
@@ -7,7 +7,7 @@
   </head>
   <body>
     <h1 id="title">report.html</h1>
-    <p>Report generated on 24-May-2024 at 10:38:46 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
+    <p>Report generated on 28-May-2024 at 09:18:46 by <a href="https://pypi.python.org/pypi/pytest-html">pytest-html</a>
         v4.1.1</p>
     <div id="environment-header">
       <h2>Environment</h2>
@@ -108,7 +108,7 @@ <h2>Summary</h2>
     </table>
   </body>
   <footer>
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class=\&#34;col-testId\&#34;&gt;biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py::TestGOdMDPrep::test_godmd_prep&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;40 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-05-24 10:38:30,289 [MainThread  ] [INFO ]  Executing biobb_godmd.godmd.godmd_prep Version: 4.2.0\n2024-05-24 10:38:30,290 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b\n2024-05-24 10:38:30,290 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b\n2024-05-24 10:38:30,295 [MainThread  ] [INFO ]  water -auto -outfile /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b/water_align.out -asequence /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b/fasta1.fa -bsequence /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b/fasta2.fa -gapopen 12.0 -gapextend 2 -datafile EPAM250 -aformat markx10\n\n2024-05-24 10:38:30,314 [MainThread  ] [INFO ]  Exit code 0\n\n2024-05-24 10:38:30,315 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_43/godmd_prep/godmd_orig.aln\nChecking if empty file: /tmp/biobb/unitests_43/godmd_prep/godmd_target.aln\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_43/godmd_prep/godmd_prep_log.out:file_utils.py:391 Executing biobb_godmd.godmd.godmd_prep Version: 4.2.0\nINFO     /tmp/biobb/unitests_43/godmd_prep/godmd_prep_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b\nINFO     /tmp/biobb/unitests_43/godmd_prep/godmd_prep_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b\nINFO     /tmp/biobb/unitests_43/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:33 water -auto -outfile /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b/water_align.out -asequence /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b/fasta1.fa -bsequence /tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b/fasta2.fa -gapopen 12.0 -gapextend 2 -datafile EPAM250 -aformat markx10\n\nINFO     /tmp/biobb/unitests_43/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_43/godmd_prep/godmd_prep_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_43/godmd_prep/725685ee-8f47-462d-9a8d-d9c7ce3f062b&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_43\n&#34;}], &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&#34;, &#34;duration&#34;: &#34;00:00:16&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:16&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-05-24 10:38:30,348 [MainThread  ] [INFO ]  Executing biobb_godmd.godmd.godmd_run Version: 4.2.0\n2024-05-24 10:38:30,349 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\n2024-05-24 10:38:30,349 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\n2024-05-24 10:38:30,349 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.aln to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\n2024-05-24 10:38:30,349 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.aln to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\n2024-05-24 10:38:30,350 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/params.in to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\n2024-05-24 10:38:30,350 [MainThread  ] [INFO ]  cd /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6 ; discrete -i godmd.in -pdbin 1ake_A.pdb -pdbtarg 4ake_A.pdb -p1 1ake_A.aln -p2 4ake_A.aln -o godmd.log -ener godmd_ene.out -trj godmd_trj.mdcrd\n\n2024-05-24 10:38:46,216 [MainThread  ] [INFO ]  Exit code 0\n\n2024-05-24 10:38:46,219 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_43/godmd_run/godmd.log\nChecking if empty file: /tmp/biobb/unitests_43/godmd_run/godmd_ene.out\nChecking if empty file: /tmp/biobb/unitests_43/godmd_run/godmd_trj.mdcrd\nChecking if empty file: /tmp/biobb/unitests_43/godmd_run/godmd_pdb.pdb\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:file_utils.py:391 Executing biobb_godmd.godmd.godmd_run Version: 4.2.0\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.aln to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.aln to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/params.in to /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:cmd_wrapper.py:33 cd /tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6 ; discrete -i godmd.in -pdbin 1ake_A.pdb -pdbtarg 4ake_A.pdb -p1 1ake_A.aln -p2 4ake_A.aln -o godmd.log -ener godmd_ene.out -trj godmd_trj.mdcrd\n\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_43/godmd_run/godmd_run_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_43/godmd_run/83612660-fc2f-481c-b213-549d9b164fb6&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_43\n&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
+    <div id="data-container" data-jsonblob="{&#34;environment&#34;: {&#34;Python&#34;: &#34;3.8.19&#34;, &#34;Platform&#34;: &#34;Linux-5.4.0-159-generic-x86_64-with-glibc2.10&#34;, &#34;Packages&#34;: {&#34;pytest&#34;: &#34;8.2.1&#34;, &#34;pluggy&#34;: &#34;1.5.0&#34;}, &#34;Plugins&#34;: {&#34;metadata&#34;: &#34;3.1.1&#34;, &#34;html&#34;: &#34;4.1.1&#34;, &#34;cov&#34;: &#34;5.0.0&#34;}, &#34;CI&#34;: &#34;true&#34;}, &#34;tests&#34;: {&#34;biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py::TestGOdMDPrep::test_godmd_prep&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py::TestGOdMDPrep::test_godmd_prep&#34;, &#34;duration&#34;: &#34;60 ms&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py::TestGOdMDPrep::test_godmd_prep&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;60 ms&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-05-28 09:18:30,667 [MainThread  ] [INFO ]  Executing biobb_godmd.godmd.godmd_prep Version: 4.2.0\n2024-05-28 09:18:30,667 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8\n2024-05-28 09:18:30,668 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8\n2024-05-28 09:18:30,672 [MainThread  ] [INFO ]  water -auto -outfile /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8/water_align.out -asequence /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8/fasta1.fa -bsequence /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8/fasta2.fa -gapopen 12.0 -gapextend 2 -datafile EPAM250 -aformat markx10\n\n2024-05-28 09:18:30,713 [MainThread  ] [INFO ]  Exit code 0\n\n2024-05-28 09:18:30,714 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_60/godmd_prep/godmd_orig.aln\nChecking if empty file: /tmp/biobb/unitests_60/godmd_prep/godmd_target.aln\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_60/godmd_prep/godmd_prep_log.out:file_utils.py:391 Executing biobb_godmd.godmd.godmd_prep Version: 4.2.0\nINFO     /tmp/biobb/unitests_60/godmd_prep/godmd_prep_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8\nINFO     /tmp/biobb/unitests_60/godmd_prep/godmd_prep_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8\nINFO     /tmp/biobb/unitests_60/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:33 water -auto -outfile /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8/water_align.out -asequence /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8/fasta1.fa -bsequence /tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8/fasta2.fa -gapopen 12.0 -gapextend 2 -datafile EPAM250 -aformat markx10\n\nINFO     /tmp/biobb/unitests_60/godmd_prep/godmd_prep_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_60/godmd_prep/godmd_prep_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_60/godmd_prep/623d71de-ff52-4f3c-a1fb-957d5dbba2d8&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_60\n&#34;}], &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&#34;: [{&#34;extras&#34;: [], &#34;result&#34;: &#34;Passed&#34;, &#34;testId&#34;: &#34;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&#34;, &#34;duration&#34;: &#34;00:00:16&#34;, &#34;resultsTableRow&#34;: [&#34;&lt;td class=\&#34;col-result\&#34;&gt;Passed&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-testId\&#34;&gt;biobb_godmd/test/unitests/test_godmd/test_godmd_run.py::TestGOdMDrun::test_godmd_run&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-duration\&#34;&gt;00:00:16&lt;/td&gt;&#34;, &#34;&lt;td class=\&#34;col-links\&#34;&gt;&lt;/td&gt;&#34;], &#34;log&#34;: &#34;----------------------------- Captured stdout call -----------------------------\n2024-05-28 09:18:30,747 [MainThread  ] [INFO ]  Executing biobb_godmd.godmd.godmd_run Version: 4.2.0\n2024-05-28 09:18:30,748 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\n2024-05-28 09:18:30,748 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\n2024-05-28 09:18:30,748 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.aln to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\n2024-05-28 09:18:30,749 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.aln to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\n2024-05-28 09:18:30,749 [MainThread  ] [INFO ]  Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/params.in to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\n2024-05-28 09:18:30,749 [MainThread  ] [INFO ]  cd /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7 ; discrete -i godmd.in -pdbin 1ake_A.pdb -pdbtarg 4ake_A.pdb -p1 1ake_A.aln -p2 4ake_A.aln -o godmd.log -ener godmd_ene.out -trj godmd_trj.mdcrd\n\n2024-05-28 09:18:46,298 [MainThread  ] [INFO ]  Exit code 0\n\n2024-05-28 09:18:46,300 [MainThread  ] [INFO ]  Removed: [&amp;#x27;/tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7&amp;#x27;]\nChecking if empty file: /tmp/biobb/unitests_60/godmd_run/godmd.log\nChecking if empty file: /tmp/biobb/unitests_60/godmd_run/godmd_ene.out\nChecking if empty file: /tmp/biobb/unitests_60/godmd_run/godmd_trj.mdcrd\nChecking if empty file: /tmp/biobb/unitests_60/godmd_run/godmd_pdb.pdb\n\n------------------------------ Captured log call -------------------------------\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:file_utils.py:391 Executing biobb_godmd.godmd.godmd_run Version: 4.2.0\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.pdb to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.pdb to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/1ake_A.aln to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/4ake_A.aln to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:file_utils.py:391 Copy: /home/user/actions-runner/_work/biobb_godmd/biobb_godmd/biobb_godmd/test/data/godmd/params.in to /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:cmd_wrapper.py:33 cd /tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7 ; discrete -i godmd.in -pdbin 1ake_A.pdb -pdbtarg 4ake_A.pdb -p1 1ake_A.aln -p2 4ake_A.aln -o godmd.log -ener godmd_ene.out -trj godmd_trj.mdcrd\n\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:cmd_wrapper.py:50 Exit code 0\n\nINFO     /tmp/biobb/unitests_60/godmd_run/godmd_run_log.out:file_utils.py:391 Removed: [&amp;#x27;/tmp/biobb/unitests_60/godmd_run/1d8155d8-9e37-43b3-adad-b5bdf3bfc2d7&amp;#x27;]\n\n--------------------------- Captured stdout teardown ---------------------------\n\nRemoving: /tmp/biobb/unitests_60\n&#34;}]}, &#34;renderCollapsed&#34;: [&#34;passed&#34;], &#34;initialSort&#34;: &#34;result&#34;, &#34;title&#34;: &#34;report.html&#34;}"></div>
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 const { getCollapsedCategory, setCollapsedIds } = require('./storage.js')
