setup.py

import setuptools

with open("README.md", "r") as fh:
    long_description = fh.read()

setuptools.setup(
    name="biobb_structure_utils",
    version="5.0.0",
    author="Biobb developers",
    author_email="pau.andrio@bsc.es",
    description="biobb_structure_utils is the Biobb module collection to perform basic manipulations on 3d structures.",
    long_description=long_description,
    long_description_content_type="text/markdown",
    keywords="Bioinformatics Workflows BioExcel Compatibility",
    url="https://github.com/bioexcel/biobb_structure_utils",
    project_urls={
        "Documentation": "http://biobb-structure-utils.readthedocs.io/en/latest/",
        "Bioexcel": "https://bioexcel.eu/",
    },
    packages=setuptools.find_packages(exclude=["docs", "test"]),
    package_data={"biobb_structure_utils": ["py.typed"]},
    install_requires=["biobb_common==5.0.0", "biobb_structure_checking>=3.13.5"],
    python_requires=">=3.9",
    entry_points={
        "console_scripts": [
            "cat_pdb = biobb_structure_utils.utils.cat_pdb:main",
            "closest_residues = biobb_structure_utils.utils.closest_residues:main",
            "extract_atoms = biobb_structure_utils.utils.extract_atoms:main",
            "extract_chain = biobb_structure_utils.utils.extract_chain:main",
            "extract_heteroatoms = biobb_structure_utils.utils.extract_heteroatoms:main",
            "extract_model = biobb_structure_utils.utils.extract_model:main",
            "extract_molecule = biobb_structure_utils.utils.extract_molecule:main",
            "extract_residues = biobb_structure_utils.utils.extract_residues:main",
            "remove_ligand = biobb_structure_utils.utils.remove_ligand:main",
            "remove_molecules = biobb_structure_utils.utils.remove_molecules:main",
            "remove_pdb_water = biobb_structure_utils.utils.remove_pdb_water:main",
            "renumber_structure = biobb_structure_utils.utils.renumber_structure:main",
            "sort_gro_residues = biobb_structure_utils.utils.sort_gro_residues:main",
            "str_check_add_hydrogens = biobb_structure_utils.utils.str_check_add_hydrogens:main",
            "structure_check = biobb_structure_utils.utils.structure_check:main",
        ]
    },
    classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Programming Language :: Python :: 3.9",
        "License :: OSI Approved :: Apache Software License",
        "Operating System :: MacOS :: MacOS X",
        "Operating System :: POSIX",
        "Operating System :: Unix",
    ],
)