From 5a865853a7750c45b24f6039888d35a39e979c10 Mon Sep 17 00:00:00 2001
From: fynnbe <thefynnbe@gmail.com>
Date: Mon, 2 Dec 2024 09:42:18 +0100
Subject: [PATCH] add careamcis compatibilty check workflow

---
 .../check_compatibility_careamics.yaml        | 49 +++++++++++++++++++
 .../workflows/generate_collection_json.yaml   |  1 +
 2 files changed, 50 insertions(+)
 create mode 100644 .github/workflows/check_compatibility_careamics.yaml

diff --git a/.github/workflows/check_compatibility_careamics.yaml b/.github/workflows/check_compatibility_careamics.yaml
new file mode 100644
index 0000000..da3f6ad
--- /dev/null
+++ b/.github/workflows/check_compatibility_careamics.yaml
@@ -0,0 +1,49 @@
+name: check compatibility careamics
+
+concurrency: careamics
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - .github/workflows/check_compatibility_careamics.yaml
+      - scripts/check_compatibility_careamics.py
+  workflow_dispatch:
+  schedule:
+    - cron: 0 1 * * *  # update compatibility once a day
+
+jobs:
+  run:
+    runs-on: ubuntu-latest
+    environment: 'production'
+    steps:
+    - uses: actions/checkout@v4
+    - name: Setup careamics env
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        generate-run-shell: false
+        cache-downloads: true
+        environment-name: careamics
+        condarc: |
+          channels:
+            - conda-forge
+            - pytorch
+        create-args: >-
+          pytorch
+          torchvision
+          cpuonly
+          python=3.10
+          numpy
+          pip
+    - run: pip install careamics
+    - name: Install backoffice
+      run: pip install .
+    - run: python scripts/check_compatibility_careamics.py
+      env:
+        S3_HOST: ${{vars.S3_HOST}}
+        S3_BUCKET: ${{vars.S3_BUCKET}}
+        S3_FOLDER: ${{vars.S3_FOLDER}}
+        S3_ACCESS_KEY_ID: ${{secrets.S3_ACCESS_KEY_ID}}
+        S3_SECRET_ACCESS_KEY: ${{secrets.S3_SECRET_ACCESS_KEY}}
+        RUN_URL: ${{github.server_url}}/${{github.repository}}/actions/runs/${{github.run_id}}
diff --git a/.github/workflows/generate_collection_json.yaml b/.github/workflows/generate_collection_json.yaml
index b43dc36..a5df5c3 100644
--- a/.github/workflows/generate_collection_json.yaml
+++ b/.github/workflows/generate_collection_json.yaml
@@ -7,6 +7,7 @@ on:
     workflows:
       - 'check compatibility ilastik'
       - 'check compatibility biapy'
+      - 'check compatibility careamics'
     types: [completed]
     branches: [main]
   push: