From b8ebe06bc94890e1bf7c190caaf23292c2acad4c Mon Sep 17 00:00:00 2001
From: fynnbe <thefynnbe@gmail.com>
Date: Tue, 29 Oct 2024 13:23:53 +0100
Subject: [PATCH 1/4] add coverage badge

---
 .github/workflows/build.yml | 16 +++++++++++++++-
 README.md                   |  1 +
 2 files changed, 16 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 0c553eab4..f5a3308fe 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -50,13 +50,27 @@ jobs:
         with:
           coverageFile: coverage.xml
           token: ${{ secrets.GITHUB_TOKEN }}
-
+      - if: matrix.python-version == '3.12' && github.ref == 'refs/heads/main'
+        run: |
+          pip install genbadge[coverage]
+          genbadge coverage --input-file coverage.xml --output-file ./dist/coverage/coverage-badge.svg
+          coverage html -d dist/coverage
+      - if: matrix.python-version == '3.12' && github.ref == 'refs/heads/main'
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage
+          retention-days: 1
+          path: dist
 
 
   deploy:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
+      - uses: actions/download-artifact@v4
+        with:
+          name: coverage
+          path: dist
       - uses: actions/setup-python@v5
         with:
           python-version: "3.12"
diff --git a/README.md b/README.md
index 58cdce47b..fbc16d130 100644
--- a/README.md
+++ b/README.md
@@ -4,6 +4,7 @@
 [![downloads](https://static.pepy.tech/badge/bioimageio.spec)](https://pepy.tech/project/bioimageio.spec)
 [![conda-forge downloads](https://img.shields.io/conda/dn/conda-forge/bioimageio.spec.svg?label=conda-forge)](https://anaconda.org/conda-forge/bioimageio.spec/)
 ![code style](https://img.shields.io/badge/code%20style-black-000000.svg)
+[![coverage](https://bioimage-io.github.io/spec-bioimage-io/coverage/coverage-badge.svg)](https://bioimage-io.github.io/spec-bioimage-io/coverage/index.html)
 
 # Specifications for bioimage.io
 

From 3903a68296daff522ab6e8b1dc28b5a6f6e4c71b Mon Sep 17 00:00:00 2001
From: fynnbe <thefynnbe@gmail.com>
Date: Tue, 29 Oct 2024 13:24:59 +0100
Subject: [PATCH 2/4] update .gitignore

---
 .gitignore | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/.gitignore b/.gitignore
index 0d5d9ce5b..fde0f363f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,14 +1,17 @@
 __pycache__/
+.coverage
 .env
+.ipynb_checkpoints
 .vscode/launch.json
+*.DS_Store
 *.egg-info/
 build/
+coverage.xml
 dist/
 docs/
-user_docs/
+output/
 tests/cache
 tests/generated_json_schemas
 tmp/
-output/
-*.DS_Store
-.ipynb_checkpoints
+user_docs/
+

From d8fd293ddd7076d293133b10ef612d9347c2373e Mon Sep 17 00:00:00 2001
From: fynnbe <thefynnbe@gmail.com>
Date: Tue, 29 Oct 2024 13:36:00 +0100
Subject: [PATCH 3/4] deploy step now needs test for coverage artifact

---
 .github/workflows/build.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index f5a3308fe..cc590dfcb 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -64,6 +64,7 @@ jobs:
 
 
   deploy:
+    needs: [test]
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4

From e2952b562e547592a9b7229273cb3779b38fc49d Mon Sep 17 00:00:00 2001
From: fynnbe <thefynnbe@gmail.com>
Date: Tue, 29 Oct 2024 14:27:57 +0100
Subject: [PATCH 4/4] also create coverage badge for PRs

---
 .github/workflows/build.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index cc590dfcb..aa9083bbb 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -50,12 +50,12 @@ jobs:
         with:
           coverageFile: coverage.xml
           token: ${{ secrets.GITHUB_TOKEN }}
-      - if: matrix.python-version == '3.12' && github.ref == 'refs/heads/main'
+      - if: matrix.python-version == '3.12'
         run: |
           pip install genbadge[coverage]
           genbadge coverage --input-file coverage.xml --output-file ./dist/coverage/coverage-badge.svg
           coverage html -d dist/coverage
-      - if: matrix.python-version == '3.12' && github.ref == 'refs/heads/main'
+      - if: matrix.python-version == '3.12'
         uses: actions/upload-artifact@v4
         with:
           name: coverage