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NEWS
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Changes in version 0.99.27 (2019-10-22)
* Use tempdir() in test to avoid using home dir of bioconductor build machine
Changes in version 0.99.26 (2019-09-23)
* Use tempdir() in examples and vignette to prevent from contaminating Bioc and users' machine
Changes in version 0.99.24 (2019-09-23)
* Update source code for robustness
Changes in version 0.99.23 (2019-09-14)
* Add support for type SummarizedExperiment in function predictor()
* Fix output directory problem in main function
* Remove some unused functions
Changes in version 0.99.22 (2019-09-06)
* Fix bugs by removing lazy load
Changes in version 0.99.21 (2019-09-06)
* Add overwrite function for main function
* Optimize packages suggested checking
Changes in version 0.99.20 (2019-07-30)
* Fix predictor() error by complete cases
Changes in version 0.99.19 (2019-07-29)
* Fix m.f.s bug when calculating centroid of new matrix
Changes in version 0.99.18 (2019-07-29)
* Add a choice for using kmeans() for super-clustering
Changes in version 0.99.17 (2019-07-29)
* Add a parameter allowing keep rows with no variance
* List for centroid2exp() should not be filtered by variance
Changes in version 0.99.16 (2019-07-29)
* CrossICC now need R version >= 3.5
* Update ssGSEA function
Changes in version 0.99.15 (2019-07-28)
* CrossICC now need R version >= 3.6
* Fix NAMESPACE bug
Changes in version 0.99.14 (2019-07-28)
* Update vignette and man pages
Changes in version 0.99.13 (2019-07-28)
* Update vignette and man pages
Changes in version 0.99.12 (2019-07-28)
* Fix ssGSEA() bug
* Remove external shiny calling function
* CrossICC() can reset working directory to previous one now
Changes in version 0.99.11 (2019-07-28)
* Add sankey plot to shiny app
* Optimize the main function
Changes in version 0.99.10 (2019-07-27)
* Update ssGSEA man page
Changes in version 0.99.9 (2019-07-27)
* Label ssGSEA examples as donttest
Changes in version 0.99.8 (2019-07-27)
* Update help page of function CrossICCInput(): example should contain file name pattern
Changes in version 0.99.7 (2019-07-26)
* Update man pages
Changes in version 0.99.6 (2019-07-26)
* Use all functions in reloaded MergeMaid code
* To test all examples in exported function
Changes in version 0.99.5 (2019-07-26)
* Turn off default shiny calling
Changes in version 0.99.4 (2019-07-26)
* Update some man pages
Changes in version 0.99.3 (2019-07-26)
* Update examples for most functions
* Remove random seed of ConcensusClusterPlus function
Changes in version 0.99.2 (2019-07-25)
* Fix some mistakes in Rd files
Changes in version 0.99.1 (2019-07-25)
* Main function CrossICC will not use shiny app by default
* Add sankey plot
* Remove some default dependencies (only needed when use shiny)
* Fix some check error and warnings
Changes in version 0.1.1 (2019-06-25)
* Update vignette and some man pages for functions
Changes in version 0.1.0 (2019-06-25)
* The first version of CrossICC
* Submitted to Bioconductor