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Add new ome-zarr-writer #46

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toloudis opened this issue Jul 1, 2024 · 0 comments · Fixed by #48
Closed

Add new ome-zarr-writer #46

toloudis opened this issue Jul 1, 2024 · 0 comments · Fixed by #48
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enhancement New feature or request

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@toloudis
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toloudis commented Jul 1, 2024

Feature Description

We have a new ome-zarr-writer implementation that works much better for converting our large time series data. We'd like to make that a part of bioio now.

Use Case

We have lots of data to convert to ome-zarr. The current ome zarr writer is unstable and doesn't work well on large data.

Solution

Clean up the code from here:
https://github.com/allen-cell-animated/cellbrowser-tools/blob/nucmorph/cellbrowser_tools/ome_zarr_writer.py
and add it to this repo.
Add documentation as needed.

Question: How should we deprecate the old zarr writer that already exists in here?

Alternatives

@toloudis toloudis added the enhancement New feature or request label Jul 1, 2024
@toloudis toloudis self-assigned this Jul 1, 2024
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