From e581051449cc0735d492d033695f33e8e00d3a16 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Wed, 2 Jun 2021 18:45:38 -0400 Subject: [PATCH] Create RDF, TSV, and YAML exports (#70) Closes #69 --- docs/_data/bioregistry.nt | 22580 +++++++++++ docs/_data/bioregistry.ttl | 20369 ++++++++++ docs/_data/bioregistry.xml | 31759 ++++++++++++++++ docs/_data/collections.tsv | 3 + docs/_data/collections.yml | 53 + docs/_data/metaregistry.tsv | 14 + docs/_data/metaregistry.yml | 149 + docs/_data/registry.tsv | 1181 + docs/_data/{bioregistry.yml => registry.yml} | 440 +- setup.cfg | 1 + .../app/templates/meta/download.html | 50 +- src/bioregistry/cli.py | 24 +- src/bioregistry/export/__init__.py | 3 + src/bioregistry/export/__main__.py | 8 + src/bioregistry/export/cli.py | 22 + src/bioregistry/export/rdf_export.py | 201 + src/bioregistry/export/tsv_export.py | 128 + src/bioregistry/export/yaml_export.py | 32 + 18 files changed, 76767 insertions(+), 250 deletions(-) create mode 100644 docs/_data/bioregistry.nt create mode 100644 docs/_data/bioregistry.ttl create mode 100644 docs/_data/bioregistry.xml create mode 100644 docs/_data/collections.tsv create mode 100644 docs/_data/collections.yml create mode 100644 docs/_data/metaregistry.tsv create mode 100644 docs/_data/metaregistry.yml create mode 100644 docs/_data/registry.tsv rename docs/_data/{bioregistry.yml => registry.yml} (99%) create mode 100644 src/bioregistry/export/__init__.py create mode 100644 src/bioregistry/export/__main__.py create mode 100644 src/bioregistry/export/cli.py create mode 100644 src/bioregistry/export/rdf_export.py create mode 100644 src/bioregistry/export/tsv_export.py create mode 100644 src/bioregistry/export/yaml_export.py diff --git a/docs/_data/bioregistry.nt b/docs/_data/bioregistry.nt new file mode 100644 index 000000000..a61387529 --- /dev/null +++ b/docs/_data/bioregistry.nt @@ -0,0 +1,22580 @@ + "false"^^ . +_:N570bcf3bd0a343739a2f2d38fd8a24cf . +_:N164195cec4df48098650a1c895078b6b "OHD" . + "https://wormbase.org" . +_:Naf52fa41475441f89dd17542fec2c421 . +_:N4d0eff72a5a941f6aaedb718990f5edc "P2064" . +_:N415e0be562474c10b0e26b9c0d842a64 . + "false"^^ . + "The COVID-19 Infectious Disease Ontology" . +_:N1473bedc00334b659476b3600cf85468 . +_:Nac8917df455a4c6f9210cb84ddc45743 . + . + . +_:Nd4dcb29e9b044e05a0dcea2a2e46ede1 "gomodel" . + "None" . + "None" . + "NCBI PubChem database of bioassay records" . +_:N85c43a1bb5664bfab6a7640a3adea608 . + "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences." . + _:N722090580b904eeebc830ea637bb6bae . + _:N97ae41bb81904b36bcec5eb04da99201 . + . + _:N64d3332d57084758a43f48d8cd32b3a2 . + _:N35e231fc3ea34a2eb9d106c3cd2d356b . +_:Nf627ce1c76f04551aaee7d159344902a . +_:Nee101c4ae5544dd4955e9a1fde93483b . + _:N9a5be245fc17403fa4655bc23e5a1949 . + . +_:N7a01610c10b149c98907a8e3bc48f12e . +_:N7e3379b8d5ff41289ba7b006c3caeb69 . + "false"^^ . + "false"^^ . +_:Naaffb007f49a4cd2a6dc15f3f733c296 . + . + _:N946c1ab86ed146c9a3cdfe7a4b3832c8 . + _:N1548722f7e2744d5bcda937ccfc28309 . + _:N84484c37ee2d4e1f817a804a527a0be4 . + _:Nc0a56045eef2410bbfb1adbff1ba529a . +_:N532ff7ebb6f6446b880d73a3d9ffa8d6 . + "^[A-Za-z-0-9_]+(\\@)?$" . + "false"^^ . + _:N46c9efce09144788ade45415316df734 . +_:Nbab5d5d813ec4160a367f91a0e549bd3 "nasc" . + "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$" . +_:Nd58c6b898a6c45d88f19680160c0a00c . + "^G\\d+$" . + "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA." . +_:Nd6466d84cb6f488483fc7e14a2b4bc38 . + "false"^^ . + "None" . +_:Ne622fbe53310440e862f54ca6fdde788 . + "BG11523" . + "true"^^ . +_:N91fe0c3a6ab046cb8bb2c0a38e4e1246 "nbrc" . + "https://identifiers.org/zinc:$1" . + "Ontology for Biomedical Investigations" . + "2019-08-03_00000089_1" . + _:N180adeb98e224199af87a54ba29a404b . + . + "MIR:00100005" . + "ArrayExpress" . +_:N4351a393b1684bae9589629b17443d9f "P662" . + "https://identifiers.org/pseudomonas:$1" . + "9606" . +_:Nd4dcb29e9b044e05a0dcea2a2e46ede1 . +_:Ncf0be15fea3145ebba3e27b7b864b15a . +_:Nf09c74910bde42dfbce5b42bd65699fc . + _:Nc19f91f0bdb94508bccde79baf337948 . +_:Nbc9424f30cb44681aa45b9104293a2f5 "OPMI" . +_:Nb9b3a9f8128c403a85568bbe3a23dbcd "adw" . + _:N9c85fecb71094fc2891b03a3e5bf98e8 . + "Q5BJF6-3" . +_:N71081f432436440bb4aa224ad49d19ee . +_:Nd63e1ad9eb3441d4a47db97cf647022f . + "https://identifiers.org/dragondb.dna:$1" . +_:Nb57dca6e55fd4c9ab697c757887499a8 . + "http://www.cropontology.org/ontology/CO_333/Beet%20Ontology" . +_:N06a9b2e521c841fcb79cc3b04625453f "GREENGENES" . +_:Na894eac69df94b76b6663f35fb2a30dc "P2410" . + . +_:N0c8377f52b33454d8e9ae2056a3d5f81 . + _:N3cd0c2ec07a446f5899a1af27c494ebe . + "WormBase" . +_:N71f67e6603874533b9d0f187b3b79b2f "rfam" . + "https://identifiers.org/narcis:$1" . +_:N424756c79f534aaeb40e173ab5597e77 "trans" . +_:Ndd88c16b045b408491f60144bc56e36c . + "https://www.pharmgkb.org" . + _:N267693befd9147f2a4f5511a43432f62 . +_:N02a62e70e86540aa8ae20b21a10a5ecd "MO" . + "http://browser.planteome.org/amigo" . + _:Nf778f2447dbb479486b852c7faf6f275 . + "https://identifiers.org/clinvar.submitter:$1" . +_:Nf58b7ecd91f144f0ac534ed175191d80 "mi" . + . + "https://identifiers.org/biomodels.teddy:$1" . +_:Nc66b5b8d00274f79b830ae2a632fe46f . + _:N2acae0a97d594b03bdee5cc83ceb7c39 . + "MOL000160" . +_:N238c7a37ec0c417e9338370b30eeb1e3 . + _:Nfc5d39f6f1d4418dbfe0e0cc03d5a0ce . + "28" . +_:N3d92b75026e840b4b252d6bcee0d4051 . + "^(R)?PXD\\d{6}$" . + "None" . + _:N5c98a3be823847878ae1630f7297e3d0 . + "PhosphoPoint Kinase" . + _:Na9ca0e1443994d01a34c49549183d3cd . +_:Ne145950fa2aa45b38647a9ef2f2adbe5 "RGD.STRAIN" . +_:Ne2ea0e7170444c249768bd0ade93cc48 "3dmet" . + . + "Orphanet is a reference portal for information on rare diseases and orphan drugs. It\u2019s aim is to help improve the diagnosis, care and treatment of patients with rare diseases." . + "493771" . +_:N1f3d5dfb7a574eda97d5cec2ce7f4503 "cas" . +_:N0e22b53495a6467fbefd92bc16d9945a "EHDAA2" . + _:N4230a9e838ea4f1da73859d9b722df1d . +_:Nb89cec5f53ea47dba47e2b1cc5e723fd . +_:N8fb2c50fdfef475e933e1052b9f417ec . + "S01.001" . + "https://identifiers.org/tritrypdb:$1" . + "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys." . + _:N25ea32885068413c812379f08e8ca7b6 . +_:N3246ef4e40f04c57ae143e0a0d4aa1fb "NEXTPROT" . + "false"^^ . +_:Nb4d85046409e4c6c84822aba4f510142 . +_:N79fdeb9a9695470597f92046f8a21eee . +_:N3a7f3921409842fca32fbd8fe2dc9dea . + . +_:N0462cd92567c40feab2dd5fd0c59431a . + "false"^^ . + "https://identifiers.org/ilx:$1" . + "None" . +_:N2c8a9260917c49d3b47ca31d3a8d7488 "aop.relationships" . + "Pubmed Central" . + . + "https://identifiers.org/bugbase.expt:$1" . + "https://identifiers.org/OCID:$1" . + "None" . +_:Nad4d2ef1f7d3422c9ea8ab0c947a0d49 "oryzabase.gene" . +_:Nbbc63def8fb34bebbd61dd465e56c126 . + "26957" . + "An ontology covering the taxonomy of teleosts (bony fish)" . +_:N8578c234315947d38e493eb987891e4f . + "C2584994" . +_:N9bd509708aa64f7eb2394f329d45db50 . +_:N74c1bc675fc14bbe9d62287e6dbcac81 "ORTH" . + "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest." . + . +_:N56bc08278d364f4192fe6ce4b2103c50 "FBdv" . +_:Nd1ef5287d43b4735b089f37bfbcbc8c9 . +_:N67bfcf5981784b3e9abbae52e713a3fa . +_:N4756f3e592034daf98118bc5fea119d6 . +_:Nec390dd0f7eb40d28bdcd879c4658668 . +_:N31dfc30729434f92afce65821c4722ef "lrg" . + "false"^^ . + "None" . + "^\\d+$" . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information." . + . +_:N04082896a0444a749cf084ac9647fd6b . +_:N7a62370addc946f29138fffdc3b4a519 "aspgd.locus" . + "https://identifiers.org/ligandbox:$1" . + . + _:N250373cf4f67409b9f3dc8bef6f9e931 . +_:Nfe7b12fc66a5488dae523a179a0e0356 "CGD" . + "https://topfind.clip.msl.ubc.ca" . + "None" . + . + _:Ndd6bd5e7334d4f24a7c3f0f34a674cff . + "http://www.cropontology.org/ontology/CO_348/Brassica" . + "https://www.jax.org/strain/$1" . + "false"^^ . +_:N94eb63e92a3e490bbdc1b5fc1ab5bc9d . + "http://www.ebi.ac.uk/efo/efo.obo" . + _:N72998157bae248c49f7e49b0f92af384 . +_:Nc1255560ac2b4bf8843037f1a0e5d18c . + _:N0dbb683f7a04479fa940a59732ff9e79 . + _:N9978b74ef2014287b10d6d56994f25f7 . + "false"^^ . + "A public place to process, interpret and share GC/MS metabolomics datasets." . +_:N0cec9486fde94c9398be40f67deeadd0 . + "^PROB_c\\d+$" . + "false"^^ . + _:Na1161b67b4e84cfc8d2eccb24120ad64 . + "false"^^ . + . + "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1" . +_:N6cab9c7d976b48b9b78338ddb902c175 . +_:Nfcfc70aa95fd4d999c722ca18324e671 . +_:N3e528d3797de47bba86d2ab40196e725 "sugarbind" . + _:N22bf6720df6341ed98118af48a0bd464 . + "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. 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This colelction is concerned with CATH domains." . + "Foundational Model of Anatomy" . +_:N40df88fda60d4457b167f7806ad1a61c "multicellds.collection" . +_:Ndaff5e3409514ca28492409d110bb9a6 . + "^HGVM\\d+$" . +_:N9194679d2a764a5c8855251fa503a0cc "JCM" . + _:Nf200c037106a4451b389e15a0a0e05f5 . + "false"^^ . + "Pathogen Host Interaction Phenotype Ontology" . +_:N8c99efaf30e94f6fa41c3e8a7dd4eca0 "geo" . + "diapriid@gmail.com" . +_:N1b11e70fdfe446f2bf2f14b4ab69bca2 . + _:N519e17f461e34a8789b636876cae0475 . +_:N9512305efe7d4ac1afadf57416daea35 . + _:N22012ac256af4f259473ef56bbd5bd41 . +_:Nddb1eb2cb0ab4db28974ba6698f29215 "BIOPROJECT" . +_:N8c193499523840e895defc956b3bf4a2 "DRON" . + "false"^^ . + "10.1621/vwN2g2HaX3" . + "http://zfin.org/" . +_:N89b1ab1d5ad24707b3e19f0dd394f7e6 . + "false"^^ . + "https://identifiers.org/gpmdb:$1" . + "mbrochhausen@gmail.com" . +_:N8b1e383535154f698796c801b26e8d71 "labo" . + "linikujp@gmail.com" . + "https://www.ebi.ac.uk/ols/ontologies/eol/terms?iri=http://purl.obolibrary.org/obo/EOL_$1" . + _:N9cd84d74eeb34485a1d04e55763044be . +_:Na8e61fc3b9af4b038a994d1636edcac3 . + "None" . + "None" . + _:N3fde1a2294ad4d058c7ce8686cd64374 . +_:N35dd8df0ac5f4f0b860b1d6f4fb118bf . +_:Nc59370b34e744ccea662634c9e097e37 "P671" . + _:Nc85b5255ecdb4fe98fafb8e9fe8b1039 . + "AHR" . + "http://purl.org/net/orth" . +_:N722090580b904eeebc830ea637bb6bae "mesh.2013" . +_:Nfab8239ec9044300bbb6b5d77f60f4a5 . +_:N06a4323757b84dfdb324b81f3ecb1bb4 . + . + _:N6e06fbecbb8b45838d482313330b93bc . + "http://geneontology.org/" . + _:Ndbb8e9b58f0a43b598e988e9c867e94e . + . +_:Ne762f0f356cb4752b981e2e8cfea6f56 "bgee.stage" . +_:Nc6692d044e634beab8a1f0d1e9adbe45 . + _:N913f5c8e984145b19300f308253cde1b . + _:Ndfa05b9d1b5b414db76e746f57e4fe28 . + "https://identifiers.org/repeatsdb.structure:$1" . + _:N4580d59588024cf39f91202e8dade091 . + "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$" . +_:N5144616c219246999503a737332f7f3f . + _:N6bd7246bc7d8426188033448e5dd568b . + "bgee@sib.swiss" . + _:Nc76b30f287e445bda1be7eee3f83aa2b . +_:N5805a07526644a559ae7587ff6827d5a . +_:Na2412d83215f4fe69e57d5f0f2834786 . + "PKDB00198" . + "Antibiotic Resistance Ontology" . +_:N1dac07e93cf246ec99621eae7e6409af "ms" . + . + "^(bmr|bmse|bmst)?[0-9]{1,6}$" . +_:N9ab96fa413d640e9b0487d8ec5d51d44 . + "VMH reaction" . +_:N5449cb69b67a4c0ebbc05baa6f8eec8a "GENEDB" . +_:Nae18cad1239c455cbfb166cd0baad183 . + _:N696535c8979045f78f645bbf3ae2090a . + _:N7895364633cd4d83a51bedf952e7314e . + "https://www.ebi.ac.uk/ols/ontologies/poro/terms?iri=http://purl.obolibrary.org/obo/PORO_$1" . + "^\\d{7}$" . + _:N3fc1564d6fda4cdeb69a4cbee8ab338d . +_:N4abe2e05da3e4c8683e99a8bea53bb24 . + "Alan Wood's Pesticides" . + "false"^^ . + _:Nd7bc1fc257414dbeb5dfa03865680cb8 . + "https://identifiers.org/protonet.cluster:$1" . +_:N4fa636b2e2f343e1adc0205bb1e09053 . + "0000390" . + _:Nac7be0bbeae947dabe2b4f837ec485f9 . +_:N43c9c690a48c4e658126458424ab7fd4 "ligandbox" . + _:Nb62fc8a0d8a149018ec3efec57f3bcbe . + "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession)." . +_:Na5cad4e125ff4778b355bb3ea14b2121 "GRAMENE.QTL" . +_:N9f0f6bf7559c408b832f5b2544f02df1 "ro" . +_:N42a3b62cf10a458ba4f14936f997345c "FBdv" . +_:Na4f01d912e364f01b7f8c7dd820f3e1b "STAP" . +_:N1edfccad176f4aa09c8d5e8cca9e4b78 . + "None" . + "PR00001" . +_:N2eefea3300564918ab683d6e55939a0c . +_:N377a7a3aaf0447c7b90ae7ded75fe77c . +_:N6a5d1624fa2e422da77b11591ca0efaf . + "Transport Systems Tracker" . + "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species." . +_:Nd6d3901ef77146c5a3ce5a118707ae95 . + "None" . + "None" . + "false"^^ . +_:Nf3407cbb6c7b480cb7de12e3692acafe . + "PRIDE Project" . + "false"^^ . + "https://identifiers.org/molmedb:$1" . +_:N0deb1038735b4df795775dd8559b05df . + . + "Quantities, Units, Dimensions, and Types Ontology" . +_:N4867552bc0ad470381d1eb955cf6daeb . + "EAWAG Biocatalysis/Biodegradation Database" . + "bgee@sib.swiss" . +_:Ne255a9b140df4cbf8a569f461cc8646c "ATCC" . + "https://github.com/ufbmi/OMRSE/raw/master/omrse-full.obo" . + "Ensembl Protists" . +_:Nc939984fbdd348359bc06b241f94a697 . + _:N1afb14010c0f48f1a4f88848c97a3cdb . + _:Na904fc53370340c2abb1f74baa9f22d4 . + "National Drug Data File" . +_:N4ad3ed05adad4d9290ca20f5dbfbb97d "mp" . +_:N8b795d19992b4ab0a8fe7f92907a10e4 . + "false"^^ . + "None" . +_:N3747c03b654e4dd2bf6bc01d5e92ffe5 . +_:N925cdcb585ca4ab4a66a58352393c4bd . +_:Ne9b96a1c5f7941eb8638bc5e264ca6b2 . + "C0017565" . +_:N33d553c4864d4830906847c738808686 "ASPGD.PROTEIN" . + "ProteomeXchange" . +_:N38a98efbc10c4e77aec5b7962ef16566 "SCDO" . + "false"^^ . + "https://w3id.org/hso" . + _:Nee5001ef656c4954803add1fbe3f8c54 . +_:Na3fc6b806a004ba7913e387ffabb4567 . +_:N8851d4dbf2fb49e5bf0de00ab3119041 . + "The Arabidopsis Information Resource" . +_:N384705bc64894489be660c76173f17a7 "KEGG.GENES" . + _:N01543268fbc449e4909f8c8e2f8ac234 . + _:N02b2bff400124f3d8cc411c4ff55e9b3 . + _:Ne9d14b64e442469c9e151b64f2767c20 . +_:Nd9415648a82b4e3e82c88bb6a567a7d7 "P665" . +_:Nce94d7f108d048989700c3f2c821fe2b . + "None" . + _:N3af438364f174a37a0237c905d8f75ae . + "false"^^ . + "RGD Disease_Ontology" . + "http://cellimagelibrary.org/" . +_:N18b48308f3f5493bbcee86294e1871cc . + "false"^^ . +_:N1baac742c9ad49eebae953193ccb4a8f . +_:Nae1f4bdb6050425e8603ab357a27190f "foodb.compound" . +_:N8987bad3099543f99f357240884a60d8 "bioportal" . + "HGVM15354" . + "^ERM[0-9]{8}$" . + "false"^^ . + _:N86b64e5764044507b31fa88542c1b2b7 . + "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins." . + "VMH Gene" . +_:N013bb45c91c94c44b70855ab68523acf . +_:N4ffc227255404fe7b1c3c17aee58c7dc . + "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research." . + "https://github.com/ClinicalTrialOntology/CTO/" . + "ArrayGroup" . +_:Na2bf0a0197db4e93958595c18695d0f2 . + _:N21ee9b55b41e4f0c8c8b698f43af463c . + "SEQF1003" . + "BARC-013845-01256" . + "https://identifiers.org/pubchem.substance:$1" . + "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information." . +_:N9a4aa9f6892548928abe0d5c94e53b58 . +_:N8c668438debb457e935e5d06ad2a9e96 "XL" . +_:Nf2276b7895ce49eaadfe35f0676015f0 . + . + "1250" . +_:Nd4fb9dad5ac749869a9e97d671935e6c . + "^\\d{7}$" . +_:Nab270d80455f4cb2b796264e1adbda82 . +_:Nc9285dd3bea341a4919ee9021cfcd25d . +_:Nfb55154509de4a298f707595df603b1d . + "^[A-Z]+[A-Z-0-9]{2,}$" . + "https://identifiers.org/ligandbook:$1" . + "https://identifiers.org/stitch:$1" . + "Mouse adult gross anatomy" . + "004435" . + _:Nb3aac734702140c0b8119b14c9118910 . +_:N56571cf694194e319a800f477d072562 . + "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$" . + "gthayman@mcw.edu" . + "A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology." . + . +_:N51b952f85a8c4930a0c495d2ea0c49a6 "dictybase.est" . + "RiceNetDB Gene" . +_:Nbb4c8200bc224971a4f929c42046a007 . + . + "None" . + "http://eawag-bbd.ethz.ch/" . + _:N7001c0aa46dd4ecaa4884632be237bb2 . + _:N789af802fe314b03b5be160efcf68d0d . +_:N2b39ae2a5bc84a4ebd12d56b5a376cff . +_:N17f98bd652e340eebc27d3044aeb34cd . + "false"^^ . +_:Ned26489a731b4f84ade0bc5e5d9b7b20 . +_:Nae1f4bdb6050425e8603ab357a27190f . + _:Ne96ce534736d42eb983e89e9b7025f91 . +_:N42394ee9ddd84f42a5d7b1e733be998d "SGD" . +_:Nfbf0048075cc4d42bfe5a3872abd5bfe "cco" . +_:Nce01389a0a144c348e0e902093f673b8 "CATH" . + "false"^^ . + "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information." . +_:Nf451151cdc36483089764eb84e81792a . + . +_:Ndbbcb701367746659991b1cc2718edfe . + . +_:Ne468082d34f940d6884454c6356e0d25 . + "^\\d{7}$" . + "mauno.vihinen@med.lu.se" . +_:Nf769bdef2ab7490690f238527a3e9b83 . + "None" . + _:N32c6d012614e450e932e5c056ade85b3 . +_:N35c3b60e90224ca7b85a88cabe00b518 "ENCODE" . + "None" . + "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT\u2013qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages." . +_:Ne2dac13471f74033bd061f46b2a150cb . +_:N892332231429436daa752baeab01b6c7 . +_:N33caaa21e4004b489216baa837dfa8d3 . + _:N8c5c7cf79b4b4c7582a214f4db53ca42 . + _:N093988891fe64128b8fc54f4046aeb49 . + "GXA Expt" . + . +_:Nacc51a743ca24b8087431a64adf2af58 . + "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators." . +_:N36facfcefe684f008ba7b6dc4cc9b9df . +_:N71c29ee7a7a1443082ee2478ac524d87 . +_:Nd5e5dfd1972f4609bbc5e5d4466b2935 "mi" . + _:N0e9781630dd54101825eef9c65c08679 . + _:N5e89047a7b6d4d7f833c84e90f207d88 . + _:Nefaedaf016264018aee2ccfe447ad0c6 . +_:N829f24f4774a4f79b04dd982107e5f0e . + "https://identifiers.org/macie:$1" . +_:N502df234c10442878564a508a3c3f14e . +_:Nc2fbabb480c14aa1857123b74bc9d189 . +_:N1edfccad176f4aa09c8d5e8cca9e4b78 "pigqtldb" . +_:N05b79e32af1e414c896f4bbea20ee587 "pazar" . + "^\\d+$" . + _:N66be02c904b945ec878a06d233a592e5 . + "false"^^ . +_:Nf3407cbb6c7b480cb7de12e3692acafe . + "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate." . + . +_:N6d46bd4705634a3e9adc95e9eb432350 . +_:Na05b0043c1bf41ac91143f828e1b5da2 "RXNORM" . + "551115" . +_:N495d9d40d62c423cae1c00fb7322cb29 . + _:N06a00c8ad2e540068b53550e71b9e475 . + _:N60bdb6f62c914c2688809b8c0ed4d0c0 . +_:N2f65b03ff7954df491fa609271cfc2bf "YEASTINTRON" . + "^DP\\d{5}r\\d{3}$" . + _:N2f1e61249cd440019e1481b89c1f50d8 . + "^MCDS_C_[a-zA-Z0-9]{1,10}$" . + _:Ne6f3a9d0ae9e4f2fa353629ce0ec49a1 . + "https://identifiers.org/glycoepitope:$1" . + "https://identifiers.org/SO:$1" . + _:N587324241b8144eda5115471adecb0ec . +_:N00cd62fc213a4666ab6cd39529c5fd5f . + "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs)." . +_:N8acd145536574d5583ad61c1bca0ec12 . +_:Nab09337dde314e23a8837992bb5f55b8 "OCI" . + _:N0d3b34adc0b542bfafaa73f9e7865b08 . + _:N5a9494b444844343a80c3c967a912b82 . + . + "None" . + "None" . +_:N73a5bf7f831c4174b4d9783d7722e28a . + "https://www.ebi.ac.uk/ols/ontologies/co_323/terms?iri=http://purl.obolibrary.org/obo/CO_323_$1" . + _:N748c7e36009b434eb7121dc7efab8285 . + . + "Tetrahymena Genome Database" . + "https://www.ebi.ac.uk/ols/ontologies/hsapdv/terms?iri=http://purl.obolibrary.org/obo/HSAPDV_$1" . +_:Nf75cb8e6c76f44caa7e5258cd9822940 . + _:Nb875ee702fde4066a5774fe232aaaec7 . +_:Ne53eca05f6a843df809b2b9322ab49a2 . + "SwissLipids" . +_:N808a59fc699a4343bb7c0814f83963d7 . +_:Nf24359857419468c88bdc7dd7c69e377 . + _:Nd849113afde645248d41158576bb41f0 . + "http://www.cropontology.org/ontology/CO_323/Barley" . + _:Ncd9d1702468741f49ba5000caac24d32 . + "CHEMBL3467" . +_:N3e831678ad264fa69ea324f3254f6f01 "TO" . +_:N254320dde07542bd8f5f44f41fbd180f . +_:Ne12ff16ff54846ffb570aa672ea54c29 "omrse" . +_:Nc9904fc018b34ade8d541da147791e61 . + . +_:Nb229e543db43436c811d74c060d70d0c . + "https://www.ncbi.nlm.nih.gov/pubmed" . + _:N613cd7a7aab3451bab9f2f2597b1c3cf . +_:N100e507cf33945c38379b493a6f42103 . +_:N0948ee83ec8a47c7af2463ec95e94fed . +_:N1082d91f2e1f40cb829ccabeefb46da7 "ncit" . +_:N5fa9e384b6c04f18bacd90a681501a50 "UniProtKB" . + "MarDB" . + "http://purl.obolibrary.org/obo/ncbitaxon.obo" . +_:Nf84b13d2096043299b21a882561e62ba "bacmap.biog" . +_:N0da49d7a03564dc59df13a8e56052fdd . + "lucas.leclere@obs-vlfr.fr" . + "ProtoNet ProteinCard" . + . +_:Na981c06ee6cf4fdb8fce35bec170eb2a . +_:Neea47e0bb1974a4c84091ad820e4560f "sabiork.kineticrecord" . + "KNApSAcK" . + "https://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPHENOTYPE_$1" . + "^\\d+$" . +_:N127201fe304d4276b93546dd233f9218 . + "^AS\\d{6}$" . + _:Nf8c5b8b43afc400496c6fb13ce34e5be . +_:N4f88af56a8b642e49e24184b4c4db4b3 "MPID" . +_:Neae9fba37c15477abf9cd02d4776e841 "tto" . +_:N97cc5eedfc4b4add992b8ca998901922 "iuphar.receptor" . +_:N98565da8e0af477ebed5f60b1526a6af . +_:N0f0b9c1def8649e89a6365d94e3f628d . +_:Ndd8427094a264af5bd90879585b7bfa0 "mfoem" . +_:N0e19a352a4374baebb493df47f56750a . + "BBA0001" . + "false"^^ . +_:Nbbebf3a88e05429faa063c858ba17dd4 . +_:N1dabbbda973a4439b5b9d171058039ad "P6778" . + "https://github.com/micheldumontier/semanticscience" . + "Cellular Phenotypes" . + "None" . +_:Ne85b7a95d724464cb4ada98855da93e6 . +_:N91a8fa0ea4d741d89ec1d20d74e472b2 . + . +_:N084936afc5444ebe90c293157e1af78f . + . +_:Nb95b9bbf48fc426698235588eae3e4d7 . + "false"^^ . + _:N66178f6697bc4a1bbfd8712ff0af0688 . +_:N025e241dae594e7f8279a4e0c45a00c8 "SGD" . +_:N4f4d079b266c4ffda9e36d3c5bb3c328 . +_:N8f253e8685854c17b906a7669d207d98 "mint" . + "https://www.sgn.cornell.edu/" . + "false"^^ . + "^[0-9]+$" . + _:Nbcdf360f10c744c4b4151f6ed946e80e . + "https://identifiers.org/gramene.protein:$1" . + "EGAD00000000001" . +_:N4efac9c002d94966ae0029abce0053c0 "LGIC" . + _:N1b195d8f46a249d5ad3829fc5d30d39c . + _:N664823fdf7c54d128cd718b02f85d1fe . +_:N86ffa9bc2a534fc3b924881b63981fc9 . +_:N4357e212c93e4411aa48176cdbe72595 . + _:Nf979ac9717804c4d9e8fdaefc4548c57 . +_:Nc9382f5090b44f158a7caa22ed4ff326 . + "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels." . +_:N20059fffba9b41fc93a0affa29491ff6 . +_:N78d525d2c90e47ee955188b2378f4e34 "RHEA" . +_:Nce751f5be2264af5bced296248a93f0e . +_:N73e5f388bb8b4fc4bb0d363af6cb871b "pseudo" . +_:N96d2f49abe5e4ef1a6ef09c19808f1db . +_:N06c772676df14768963317c03d1038c0 . +_:Nd8a1afbffd9a4d56b8e9d61e2e028675 . + "None" . +_:Ncd18f693071b40d2a3f73fd9a4823ed9 . + "https://identifiers.org/sgd.pathways:$1" . + "None" . + "https://identifiers.org/ena.embl:$1" . + "false"^^ . + "005012" . +_:N5751b1490fbe4702addcafa52560b1a7 "repeatsdb.protein" . + "ICARDA - TDv5 - Sept 2018" . +_:Nb1af4bb46654468393bb703e5f2bc063 "PPO" . + "^[AMCST][0-9x][0-9]$" . + "https://www.ebi.ac.uk/complexportal" . +_:N8fb3a35a342945c28349902b62adcf4d "ENSEMBL.METAZOA" . + _:N2da0ea0c31a342d3a56c73b203281715 . + "None" . + "^GCST\\d{6}\\d*$" . + _:N6bf09f73e34c47e08468794a2f9b1ee4 . + "false"^^ . + "None" . +_:Naefa37cac9cd48e7923e4294a55e978f "RESID" . +_:N587a3a4ef1e14ccdbc48951e248b3650 "ega.study" . +_:N45dfa480632e49f395d9202e60a1650c "dbSNP" . +_:N3404232e07da4db19cbc18633d5daeb7 "STOREDB" . + _:Ned9647448d964de2b8c85121ad4f09dd . + "None" . + "Wormpep" . + "false"^^ . +_:N593477ba105e4ff6b80fd24436836936 "MIM" . + _:N4113d057a87f4454846a017a11236278 . +_:N9834464effb3400681dbebe097d8dd77 . +_:N67bfcf5981784b3e9abbae52e713a3fa . +_:Nc4ed6289c3a14b80906d5571b50818ea . + "The Oral Health and Disease Ontology" . + "https://identifiers.org/napdi:$1" . + "46" . +_:Nab02d816468b4819a22be102b2de09a0 "OBO" . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/cmpo/terms?iri=http://purl.obolibrary.org/obo/CMPO_$1" . +_:N33caaa21e4004b489216baa837dfa8d3 . + _:N5d7ac630d1024e1f8c001ff0f4861ead . + _:Nc53ff96b4cf947bca49b8e83914d9bdc . +_:N493cec18ed004898b7fc74034f958e48 . + . + "https://identifiers.org/brenda:$1" . +_:Ne6f3a9d0ae9e4f2fa353629ce0ec49a1 . + _:N301e4070a3d942b1b4e35d4ed95d8170 . +_:Nab02d816468b4819a22be102b2de09a0 . + _:N7be786ea70a241c1bf175ac3166cef23 . +_:N2d4dce4058d741618b9ece3ad2df4671 . +_:N072174f3d5ea4407a8d9b670c3ce3774 . +_:N305ba7ac2c2d4d1098b20af98bd1b526 . + "false"^^ . + "https://labsyspharm.shinyapps.io/smallmoleculesuite/" . + "false"^^ . + "false"^^ . + _:N441c723af283460d9c7867b203959c9c . +_:N35dfb685c48d458592a218d181b0cca1 . +_:Nd7e2d455d09c4dd487ffb79ef633fafd . +_:N54de5aa3f0364e399d91d1e290ba28ab . +_:N8e9bdfacf85f48eea0d3a4eb80d90809 . + "None" . + "^CHEMBL\\d+$" . +_:N4a59ef54031d477d8194d9905374a87c . +_:Nc1ca6602dbaf4671ba585c4789055c0b "fsnp" . +_:Nf55ef4737cb64ceb9c4768f4ef4d8ebc . + _:N1cd4eef3ad3a43c2930489523c6ac90f . + . + _:Nb8ed4d6fc4c64439bcb715ec59c5494e . + "efo-users@lists.sourceforge.net" . +_:N524f46b3ec74452ea2b30e93f63a88bd . + _:N0c2db33d23c6471f92f4f0f7ccab2712 . + "https://identifiers.org/snomedct:$1" . + _:N8055a26056cd4555861eac63fe027ada . + "None" . + "^[A-Z]C\\d{1,3}$" . + "None" . +_:N9955b7b5cfe8458f96e70207f051240f "CGD" . +_:N8dae0ebddda74e6eac2d650e06f0d858 "DAILYMED" . +_:N73c8fefa6592460382a50a9d3ed2fb72 . +_:N659bd0ba929348f781fd662863058a2f . + "false"^^ . + . + "^\\d+$" . + "M94112" . +_:Nf1c99fdd0cd24b3cbe9c83fb1b0a8714 "interpro" . + _:N83ecea0707b24cf49ac80437590b9d49 . +_:N660ba1abd5c04ef8af1f70ad9187b689 . +_:N005aeea54d1b4e6fbd8387745c0491ab . +_:Nc1f900adad0649d1a915c5da5f2236b8 . + . + "Biolink Model Registry" . +_:N5d7ac630d1024e1f8c001ff0f4861ead "imgt.hla" . +_:N79e05f406b514aad900187fd228270a9 . +_:N90ddd29a109248cdaff91a27f86c46af . + _:N4e903f09b7024269a8cd84610be7e8f2 . +_:N13a0ac307c294ff9950cbd9917f7580f . +_:N0c840f41d6434c50a1cf4c7caab8b139 . +_:Nf82c08ebb61a4b0c8042102cd01a2e99 . +_:N1ba5f287bf214bf3953352f3356a3094 . +_:N3291ad41bb72489dba7abb45636d32bb . +_:N120a35aff4544c16a603b8a8cece8a76 "lincs.smallmolecule" . +_:N1dffa901799642f7ad505d4582b3f537 . + . + _:N1ca9bd4931d74a6c8163f3f4635725c7 . + . +_:Nc778a49f67714f3abee54c5565d10982 . + _:Nab09337dde314e23a8837992bb5f55b8 . + "^\\d{7}$" . +_:N3246ef4e40f04c57ae143e0a0d4aa1fb . + "0019030" . + "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information." . +_:N0db63491cef74cfdbbe7179654a011d2 "hcvdb" . +_:N301e4070a3d942b1b4e35d4ed95d8170 . + "^\\w+$" . +_:Ne5c954e6d3424daf9976367fe60760bc "SO" . + _:N90374d2c381b4a40ad3eb3e95eb37fc4 . +_:N5bc38fb1bb924ca6bfb78d889dce42fc . + "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system." . +_:Nd008e9bd65a14f82b505a7d6f262201d . +_:N6472b7c7faaa496c9706d5c9a7e0b947 "SIBO" . + "false"^^ . +_:N46c2c5b30bcb49d88dbd2fab6b7ee5ca . + "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology." . +_:N1cb5b37356b547c7af6b19f763fa50f1 . +_:N4caf14be1a5a4ae1ba2349d19437d12b "trichdb" . + "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression." . +_:Ncd823ff23f044bdc9d0f3e0ae3e84260 "fypo" . + "KEGG Disease" . +_:Nc6692d044e634beab8a1f0d1e9adbe45 . + "false"^^ . +_:N3c9fdf1a547449adb48d4d8c4182c772 "omiabis" . + _:Nab02d816468b4819a22be102b2de09a0 . + . +_:N3bcba086a98a486892cdf833b4ead5b2 . + "false"^^ . + "System Science of Biological Dynamics dataset" . +_:N4c72a7db43ff4e2cbf37c3b25198892a . +_:Na4ac88fa6a2446d2b167e8f290da4607 "modeldb" . + "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records." . + "false"^^ . +_:N5480f5bd5ac1473d9165dec3481b08bc "DDANAT" . +_:Nbbc2e2a573b349efb36df121fb88eb2b . +_:N3af438364f174a37a0237c905d8f75ae . +_:N325431fe708f49e7b5d0450604963122 . +_:Nbfc76ce25aba430c80140ddfbad50d96 . + "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified." . +_:N4feb9ec1379b4809ae9f15e68c602d87 "FOODON" . +_:Nb1e0969dd2a54e268d30a6c06303a52a . +_:N848215682e444edd9d30fd15b9036539 "ROUGE" . + "An ontology for glycans based on GlyTouCan, but organized by subsumption." . +_:N141ba1c031d94a52896a95780ae6c7bb . +_:Ne83ac43832174917903a4d9e9f020d04 . +_:Nc6e3bf1c6c2e486d80a42a502c257846 . +_:Nf5eef5c7957e412f98300ce9c34320d6 . + "None" . +_:Ndd8b54a8f3e74b969d0185b8bcce0939 . + _:N79fdeb9a9695470597f92046f8a21eee . + "false"^^ . + "false"^^ . + "https://identifiers.org/noncodev4.rna:$1" . + "https://www.ebi.ac.uk/merops/" . + "^[A-Z0-9]+$" . + "SNR17A" . + "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies." . +_:N96a23e2293d14402b3ac7d59eb60cb9d "DOI" . + "Xenopus Anatomy Ontology" . + "false"^^ . + "https://github.com/PRIDE-Utilities/pride-ontology" . +_:N2e57a4f05cd44194b24678991345b487 "NUCLEARBD" . +_:N13f5a7b5b7834639a87ed7d82091593b . +_:Nc0f552779baf4b719bd84b25e682ab38 . + _:N97cc5eedfc4b4add992b8ca998901922 . + "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data." . + . + "true"^^ . + "false"^^ . + "None" . +_:Nfd8b074be9a84f5eae130390bea499ef "mesh.2013" . + _:Ne0e7803396544095b379c0a972c48eb3 . +_:Ne46307d4457d4a6caf0529b102ede6bf "efo" . + "https://github.com/DrugTargetOntology/DTO" . + "The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging" . + . +_:Nb1285702afbd4ef78798bedaf2722db4 "GNPIS" . + "2842" . + "Clinical measurement ontology" . + . + "Human Disease Ontology" . + . + _:Na5b3858eb28c4f54b8e93462535b8508 . +_:N8e8fae726284458aba6815795d966913 . +_:N3687da029cb9449889527882d1a97d98 "Rouge" . +_:N532ff7ebb6f6446b880d73a3d9ffa8d6 "gno" . +_:Na2fa668ec9a945c7a262c1d31a8eca89 "BIGG.REACTION" . +_:N4867552bc0ad470381d1eb955cf6daeb . +_:N3eded30ccd064d07b3434f3f5ba0cd19 . +_:N83dccb6a4ea44307bdc69eac0ab24e12 "EHDAA" . +_:Nb961d98f60b34acfb5c91aa7dae33a6b . + _:Nff62c96685914ecd9d0794d843135f99 . + _:N2b24096c54d84093a7fe2fa856299562 . +_:N24e67c608add4f228321dc5ea10c7b6c "csa" . +_:N37f9900958de4c9cba10aa386ef9eaa3 . + . + _:N70139ef06c9b4eeb9a948a9857ae5a5b . + "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$" . + "https://github.com/bgsu-rna/rnao" . +_:N255b9f496e7f49b290ecd346c2149a60 "CHMO" . + "miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species." . + "KEGG Genome is a collection of organisms whose genomes have been completely sequenced." . +_:N99d72295645a43b081d2bd862b138a38 . + _:N6d73b260f4434df09f73a9c9ce1dfec4 . + "^SMP\\d+$" . + "None" . +_:N125c33fa4486418ebdbb8ec90a500168 . +_:N2b48368a1af743609546e1f980fa3cb6 . +_:Nee85fa4e141b4c05ae222d4d4930658b . +_:N24c2f60c631e45f1af4c4e0fb80ec0f0 . +_:N7a7c46fe5fbd4092bdf2af3429d887ea . +_:Nbc9424f30cb44681aa45b9104293a2f5 . + _:N8411e26602a74c909df525e9fdc1bf80 . + "Information Artifact Ontology" . + "https://www.ebi.ac.uk/ols/ontologies/psdo/terms?iri=http://purl.obolibrary.org/obo/PSDO_$1" . + "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \r\nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon." . + "false"^^ . +_:Nd0fe07d2ee0c44d8919512a1f6bdcbb2 "zfs" . + "https://identifiers.org/pharmgkb.drug:$1" . + "https://identifiers.org/allergome:$1" . + _:Nfbf6ff83ae2b4119870b66ebf4a48c09 . + _:N3bab384af9e44982bc9c87bd9fb0826f . +_:N821eaec3b9b841b399ac2c80c7e332c6 . +_:Nfba2cc228da441baa4e8c8010dfe152a . + "None" . + "Database of Interacting Proteins" . + "\\d+$" . +_:Na387bc23b67247e08cfc36ed477f816a . +_:Nf63e43b34ec341df9aa4bc8e3d3e6f03 . +_:N42267f8133d04a73bdc60b855971ba27 "ECG" . + "BIOMD0000000048" . + "https://identifiers.org/cosmic:$1" . + "None" . +_:N04436163e681432d8234a61f0b957ce1 . + "^\\d+$" . + "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank." . + _:N1ba7e9b994834ff9abe44f7672ce3e8f . +_:Nd4670f4d3e914ef9b3842ff61c1f8914 . + _:N3e282782fda74058aa0144fbaf911686 . + "None" . + "https://github.com/obophenotype/upheno/blob/master/upheno.owl" . +_:N8b1e383535154f698796c801b26e8d71 . + _:N15ede96e1769489ebce60bf258f2fab3 . + "annethessen@gmail.com" . + _:N6b606d80567643b6844227f5162841dc . + . + "^\\d+$" . +_:N52820bd00d854df1bb1f1846d1ddef05 "isbn" . + "International Medical Device Regulators Forum" . + . +_:N5d3fa466a46d4effa966d51bd865aa9c . + "None" . +_:N6d2ef8f9fa534234801ed36dee17148f "ricenetdb.reaction" . + "None" . + "Vaccine Ontology" . + "AOPWiki (Stressor)" . + "https://identifiers.org/comptox:$1" . + . +_:N5a0b0117d91d483e86dc8d7a6677bd23 . +_:N1a4ce384ba984484b674c3e5222cf2eb . +_:N448f6a69f7a04eb69992cf61b7c2ecfe . +_:N9280ba9491d74bc2b799d361c62ea5ac . +_:N45054942e1bd4430b7eb397bb6c3f7c8 . + . + "^[0-9]{15}[0-9X]{1}$" . +_:N8265be4e39864793b3a8073551ad458e . + "^\\w+$" . + _:N6fa8ba1e749341ffa56ed021fd22f243 . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information." . +_:Nb6f4f0ad4f4b487a83dce9d8d5a2ab51 . +_:N1ca9bd4931d74a6c8163f3f4635725c7 "ms" . + . +_:N5e1b98bc344f461ba19d489cfe227335 . +_:N61b9c512df0e4ce2834aab1152016871 "AntWeb" . + "NONHSAG00001" . + "None" . + "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby." . +_:N3e4cdc36d049458f8cce52cdd4a20c78 . + "^[a-zA-Z0-9\\-:#/\\.]+$" . + "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC." . + . + "false"^^ . +_:N07af36cc7c874f8c9a1b7accbb1818ef . + "false"^^ . + "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information." . +_:N04082896a0444a749cf084ac9647fd6b "GO" . + "https://identifiers.org/BTO:$1" . +_:Nf951eed99fcd4930a20aa42e4070f3a1 . + "^HBG\\d+$" . + "Kyoto Encyclopedia of Genes and Genomes" . + "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae." . + "http://www.psidev.info/groups/controlled-vocabularies" . +_:Ndd4113956dc84f54a92f623086151deb "rdf" . +_:Na6af9bea5d1f4518b572a5055347769b . + "ForwardStrandPosition" . + _:Na06c2dd180014d2094d14168c95c9cde . + "None" . + "Units of measurement ontology" . + . + _:Nf4c7a5e7d855452ba93d0c2fc4e96a2e . +_:Nae9e38495d444c23ae6b635fdd549999 "rnamods" . +_:N4ce4354ddb8145bea6948a75e9310721 . + "http://www.clo-ontology.org" . +_:N26889da119294fdb9b088f308afdcb85 . +_:Nc59ee83b922f43b4a0f1f355f733086f . + _:Nc22e4a7a8667439a8de989a01f484a71 . +_:Nc7c104e343694608b6271fe54a9a124c . +_:N814485126d4f410f907d8e974e178b98 "GOA" . +_:N3bc1c0e5312d4195962f9b22cc395f81 "EUPATH" . + _:N536d0cdebd57448a8548e31739dd7cc6 . + "false"^^ . + _:Nd3784db48e3c4f24a3e2691166d7c7e0 . +_:N32cd267605f44a18848372d5fddec167 . + "^[A-Z]\\d+(\\.[-\\d+])?$" . + _:Nf33a5e43e0934ba3bdb81d6a84d213a3 . + "damion_dooley@sfu.ca" . + "A0014" . +_:Nffacfdeaa7e141e785995eacb1ab6c63 . + "https://identifiers.org/topfind:$1" . +_:Nd53b4acea8b045899a61c0609d37c2a6 . + _:N85291fbc09af40949d57534ecabedeea . + "false"^^ . + "None" . +_:N8af197dc8365447ca6e8d44a51ecde4a . + "false"^^ . +_:N6e02c3b2f7f9423bbd0f453754a89970 "lei" . + "Name Reaction Ontology" . + "None" . + "pylebail@rennes.inra.fr" . +_:N69cd46d39dfa431daf6a6187977e87a2 "NCIM" . +_:N08515055c8844de5b31d2d968cd023bc . + _:Nf487129af8264841b481d4f81e6e177d . + "VFG2154" . + "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception." . + "Gramene Taxonomy" . + "MycoBrowser smegmatis" . + _:Nf15decb833154cae87f3f4d07e15aa74 . + "https://europepmc.org/article/CTX/$1" . + "http://www.cropontology.org/ontology/CO_321/Wheat" . +_:Nf66563d342c24187bdf9af887675e700 . + "https://identifiers.org/ito:$1" . + "None" . +_:N50a83ee7f12a4458a85f9fbfc4799be2 "MONDO" . +_:Nb2c40c14ca5a4900be17d39a2555e13e "KEGG.DISEASE" . + _:Nb229e543db43436c811d74c060d70d0c . +_:N4233096d45a745d8b598f4d66839d9d7 . + _:N7447f17e798641e18616d6fa31d1e4b6 . +_:N501d0591b002410786e4ea0e2c11b44e "knapsack" . +_:N022626926638431081aeb826a3c9f368 "gpcrdb" . +_:Nd8ba000443424d658d14b228bba91fef . +_:Ne6bafaab2a0045d9ab0cc28681134c58 . + _:Ne78b15ff7e0e437ab5e3000eb641cbe6 . +_:N19405b3ba1f14c14933453581107256a . +_:N0cfbf7b6f406434dabea6aa977faf4df . +_:N224adacfe06a4792af1ff13dd6d030c8 . +_:N00cd62fc213a4666ab6cd39529c5fd5f . + "smr@stowers.org" . +_:N5144616c219246999503a737332f7f3f "niaest" . +_:Nb0c033b3ea604ddcacffb144f565a22c . +_:N5610785790434ae790100304cdca47d0 "bitterdb.rec" . + "jaiswalp@science.oregonstate.edu" . +_:N90d257235fc64a51896afe120435496c "antibodyregistry" . +_:N49f2ebc6b927488b99f758efa9b71187 . + . + "mjyoder@illinois.edu" . +_:Ncd738344806e453b99fb485d8c10ad14 . +_:N33b5a977faf54d9fb492269b2cd9aa6e . +_:Ne26f53d90228476ea5ed8cf83c381f8d . +_:Nb392b0426cfa41d882de1ced8c6d87ca "FAIRsharing.8t18te" . + _:N34689d2bc8cb4e288ed5805497fb68e3 . + _:N985266fd7f124cd0bab976bc21947049 . +_:Nc4ed6289c3a14b80906d5571b50818ea "mex" . + _:N55574a62bcaf4dc19cdf503f5c4010d4 . +_:N4ae0eda0e1f34044ad9054b8aa8cadbc . +_:N493cec18ed004898b7fc74034f958e48 "panther.node" . +_:N189bd2fa55f4480ba42afa77a155593b . +_:N75b355a4453a454a842dd019070145c2 . +_:Naaffb007f49a4cd2a6dc15f3f733c296 "GMD.PROFILE" . + _:N2dbb8c291a384f878fc5c9f1a9ff2f51 . + "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study." . + _:Ncf35b4e3993b42efa7a8db18e0b46e87 . + "http://www.cropontology.org/ontology/CO_337/Groundnut" . +_:Naa53dcd0832549d8a9191e684686f397 . + "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information." . + "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$" . + _:Nc39ee2305bc345569e6a155bdb84642c . + "Physico-chemical process" . + "NeuroNames" . + _:Nd9cdfe549b604244a33fcab16fc4b028 . +_:N19b70b870e834ec3afc92c956683c43f . + "^[A-Z]{2}\\d+$" . +_:N202ad33ee36d4e1ca0d284cb481bd0da . + "https://identifiers.org/pride:$1" . +_:Nc8240a3f41b942bc952e16d9dd48bb40 "RETO" . + "Plant Stress Ontology" . + "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$" . +_:N65e8379582234049b1e88ab1f073e82f . +_:Na1c021a6fd8e483f8634a8067c86f63f "dragondb.locus" . +_:N6475dd200d13470bb9a78ed072d14258 . +_:N520122c3a7054fae86addd4f5c2da621 . + "false"^^ . + "^\\d+$" . + _:N4c4498dec7364a00bc9591c7cd70bee7 . + _:N43a1f7f841d04d328d2a7b8739f7ed0e . + "https://pictar.mdc-berlin.de/" . +_:N06db56cb3b8946d7aedf6fd230422413 . + "Sickle Cell Disease Ontology" . + "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs)." . +_:N7fec856117fb4294b0017f1cb89bac32 . + "TS-0285" . + _:Nb7626a5c5f9e4518bfc600534cafcfd1 . + "https://identifiers.org/affy.probeset:$1" . + _:N6c3436fa2da046cab046c30cfd23ccf8 . + "https://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_$1" . +_:Na8c6e570066946c68942cb221af2163b . + "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information." . +_:N3fa1b0a74ee341d5b9840e36fd914595 . +_:N5b99e180583541b4af8657f1aed8b756 "foaf" . +_:N8a62001aff9544138fa1251f5eba322f "uspto" . + _:N33dcedc900cb498986a25ae8712a9587 . + "^XB\\-\\w+\\-\\d+$" . +_:N7ff748328add482ab247138c2b766364 . + . + "0000128" . + _:Neae9fba37c15477abf9cd02d4776e841 . + "DTXSID2021028" . + "https://identifiers.org/noncodev4.gene:$1" . + _:Ndeefffe214284e008172ddba12f0e5c1 . + _:Nb3d50b8db9184f2dbfabb4083d9eaaee . +_:N936215f1111b45ffb7debc03f20f6aad "WormBase" . +_:N88cb00905c234988a6fbc1c27a4b70e8 "gpmdb" . + "None" . +_:N07af36cc7c874f8c9a1b7accbb1818ef "google.patent" . + "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations." . +_:N33dcedc900cb498986a25ae8712a9587 "ogsf" . +_:N9023b95ac1444ed296f0750dfc9462a0 . +_:Nbed33e436062464fa66762d822a9898e . + _:N3d92b75026e840b4b252d6bcee0d4051 . + "https://identifiers.org/aftol.taxonomy:$1" . + _:N843d74558c2f4dafb5e0354613e11923 . + _:N6b943f2c7ee942d3ad50bc555fa485a9 . +_:N35c3b60e90224ca7b85a88cabe00b518 . +_:Nedf66421528943a98205745589ae1671 "pato" . + . + _:Nd129b41b00f241ddb45d8829c853bc41 . + . +_:Nce01389a0a144c348e0e902093f673b8 . +_:N91a8fa0ea4d741d89ec1d20d74e472b2 . +_:Na88e7dd51d0144fc996c0713c7e206ab . +_:N3b830f0954bc457b941e0fd9ea19f6af "planttfdb" . + _:N09239cf8262c4eaf9e2386a97faadbc3 . + "SEED Reactions" . +_:N9bf12db119ef4c78b2581e756dac52df "fungidb" . + "https://spdx.org/licenses" . + "https://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_$1" . +_:N60c6d1686ead4178bb552a11fc890949 . +_:Nad37c7e18f3f4109a8c46f2d2bc01edd . + "http://rgd.mcw.edu/rgdweb/ontology/search.html" . +_:N168db5aa638a42f8801c8319f562791c . + "^\\w+$" . +_:N357661de6fa94352b274ec2f68208c23 . + . +_:N9298512f00bc4ae98d4eb2a4773b1b6e . + _:Neeeefb73d6a4438188c038d826624fa6 . + _:Nd92db01af3f74fc6aa4219e50aa47eb5 . + "18" . +_:N557095b2021c4d5c97d2b8fafd1371a2 "OGG" . + _:Nbc7381c9d0874fad8a32e14a29bd5afa . + "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information." . + "^\\d+$" . +_:N0cecf057b24044c1ac8c6054050427a2 . + "https://github.com/PHI-base/phipo" . +_:N4418062faa734449ab3bc1270fcc5bc6 "echobase" . +_:Nd4a0f507306e452d945b371ada521188 . + "https://identifiers.org/pharmgkb.gene:$1" . + _:N184226fd74be4ee2aaae8f86fe3d1a56 . +_:Nc82bcfa378474e28b59688ef4a3802b6 . + _:Nc59ee83b922f43b4a0f1f355f733086f . + _:Na626d5741925463084496898ea55ecb9 . + "^RF\\d{5}$" . + "MMP02954345.1" . +_:N79a95de0ed34421887cb470bd249760f . +_:N69b4b8ac3d9b4944b62211beaa334202 . + "http://www.gramene.org/" . + "MimoDB" . +_:Na52578e1c85f4c6988b65ba13ddf0a22 . +_:N5f35e9790af04c9bb0da94160b2adebc "KISAO" . + "https://identifiers.org/compulyeast:$1" . + _:N34c69bac7a1b460691a23737f2561b84 . +_:N6b9fa6fb9c5c4829a3b4c97019b81eb5 "DIDEO" . +_:N791210333a40428b88537bd93ac1afec . +_:N40809d3dd3f7452c9331a978ec2cc42e "KEGG.GLYCAN" . +_:Nd8278c613a8d4fab877c514b0d2fa8b9 "YETFASCO" . + "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry." . +_:Nd073311cf4454cd696b551668b987a1e . + "false"^^ . +_:N3044c041ff8e4a9d8ef3046622f0b66a . + _:Ne3227edf15a242c09166ade70a577022 . +_:Nefa85aac45324876b60b85e236dbb313 "CLO" . +_:Nb2d64ed027614182bc23006ee5c74d21 . +_:Na388703ca5e34bc39ad46f58e88ab2ae . +_:N03c5436d9cdf42869e420ae9d29fa1b3 "lincs.protein" . + "false"^^ . +_:N664823fdf7c54d128cd718b02f85d1fe . + . +_:N124cf31cf4a44d6b93af688ed2884c4f . + . + _:N85662729124e495485606b9daae71d8e . +_:N8d0f731de1d54ba4a238b94e3a6bdb81 . +_:N239890447b5949498bee92396c4169b2 "MGI" . +_:N65b031ee5c70414a8a8bd2c47c95e24f . + . +_:Nbeffd964b15e49d99ba68903a410160e . + _:N781c309c800d4614901fe6da57296fca . + "None" . +_:Nbbc2a36133e14118a15f9b6d1c468935 . + . + _:N3e528d3797de47bba86d2ab40196e725 . + "false"^^ . + "None" . + "PAR:0116" . +_:N0c2db33d23c6471f92f4f0f7ccab2712 . +_:N41e0bd69c8c64d4493e92209284e925f "bdgp.est" . +_:N305ba7ac2c2d4d1098b20af98bd1b526 . +_:N492e4518975f4684a4babd8e357e822d "GUDMAP" . + "^BE\\d{7}$" . + "^[a-z][a-z]/[0-9]+$" . + "https://github.com/rdruzinsky/feedontology" . +_:N2a3eb5dc7c1d4ad3aab2523cfa36dd9a . +_:Nf2ab0ee9a5a54600b37586a0132b6f7e . +_:Ncb83dfb88bb64008ae2a40355fc5382c . + "^[0-9][A-Za-z0-9]{3}$" . + _:Ndcc44a474bfa4de4ae724df3ef6dec24 . +_:Nffc1e04a230c4648a36ef0d3a80e56bd "proglyc" . + _:N0deb1038735b4df795775dd8559b05df . +_:N3eff830c91044e7091b8176d8669c35f . +_:N2e062a7e9b1742b1881527d05d3e404f "CHEBI" . + _:N40007344bc604057b0f13f267abf5e85 . + "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy." . +_:N3d159747ec5540e2beb08dc1ae4f0bf2 . +_:Ndde5d0d8789d483aba5fcb0961d3e444 . + "false"^^ . +_:N02b71cd77b754dc2a88ecb8d37bc776f . +_:Ndbbed642fbc547e19817ddc91f1993b7 . +_:Nd8ba000443424d658d14b228bba91fef . + "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$" . + "DbXref" . +_:Nfd33b5903abf457eb2fbdd05d6c5b2e6 . + "false"^^ . + _:N062ea13b48f84a4d90c5b64906161329 . +_:Nde8afb9a390c453990123a06cfcfde5e . +_:N020abf6bfce54d76bb9366614aa89b39 . + "A structured controlled vocabulary of the anatomy and development of the Zebrafish" . + _:N4319ca1129624791a30168f78221f40b . + "johnbeverley2021@u.northwestern.edu" . +_:N15b0ab76e4404fc5a4585eb9152a0cec . + "SUPERFAMILY" . + _:N53483c13f14d404db4db9cd1f4f22072 . +_:Ne46046e5bc744f1eab8c79624a9e10e7 . + . +_:N6dbdb66ec8714ea5a23bb2eda18533a5 "gramene.qtl" . +_:N21554d741939497fa923e6df43ec405a "GWASCENTRAL.STUDY" . + . + "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism." . +_:N32d3476e6fdf48979d1ea4b5de954151 "hmdb" . +_:Nc0a6a2cd57bf47ae90b6274eb0b9bdae "pride.project" . +_:Na5341915d15c4c6c9c123117f2c134c8 . + "https://www.ebi.ac.uk/ols/ontologies/cmo/terms?iri=http://purl.obolibrary.org/obo/CMO_$1" . + "https://www.ebi.ac.uk/ols/ontologies/hso/terms?iri=http://purl.obolibrary.org/obo/HSO_$1" . + _:Nfc6eac62a3d943da9a877914473240bf . +_:N0146e927f987485bb576161c02fc7b8e . + . +_:N120b4f2ecd5b4368a813a30114548ce3 . +_:N45817e3b2f2044868838df91b6c86cc9 . + _:N8e1f709e0ba4473b946a8834df4ee385 . + "Protein Data Bank Ligand" . + "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed." . +_:N90ddd29a109248cdaff91a27f86c46af . +_:Nc5ca5e38a35246aeac57025ad363afe4 . +_:N660e089d909c4ba69cc9184e8acf4dc8 "uniparc" . +_:N8fb833c26a964905a9354d6d708ebb99 "rgd.strain" . + _:Nc0ff0974d420469186842ffc145baf87 . +_:N41b25c417d2447c9928cf5f496553225 . +_:N1ba5f287bf214bf3953352f3356a3094 . + "None" . +_:N0c5c6f13dba04e61aa41e35c5d77c367 . +_:N439218aaec214380b719c999fd554f2b . + . + _:Nb106547395024f669890a0eb628ca458 . +_:N4b6cb01fa90c4430a535695b862d039d . + _:Nbc44e2bba07242e6b444d31aafe98d0f . +_:Nc15d9bfb7f7e4d76bae20e42a424f22b . + "NCBI Gene Expression Omnibus" . + "Wikidata" . + "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved." . +_:N87c99676568b466bb164b5a792a2f626 . +_:N97c62620ca16409fa4c3747e12e4da93 "PDB" . +_:N2f19f215732b4b30b8205b996df358fe "pdb.ligand" . + _:N60270bbe69ae4608b3aa6c251bbf0e0f . + _:N4bc01410d8de4f83884ad79b4c8520b9 . + _:N27852c2927f045309807407acf4a6e4f . +_:N0169e4999f994aeb8197bdbafec9b206 . +_:Nbf70cad2cb9542cda5dfdb5d7dd2f819 "GRAMENE.GENE" . +_:Nb06e9a84c22f46e2be84c09d24258bea "miriam.collection" . +_:N1b6b11928efc447188612e6607a86fe9 . + _:N39c0f5aa9f7a49f587c76cad457c52c5 . +_:Nd09bce1b99064c489237ba0ae1e539c1 . + "None" . +_:N888c4ca365824b069d56738ded1eb5f7 "InterPro" . +_:N7b71e25f39bb40f6a44760cdcd7407e2 . +_:Nd5c3d254d70f4071ba4c305fd5587cc8 . + "44259" . +_:N2325daad1d7f4f65a8036720b3362fcf "hpm.peptide" . + _:N3ec9d1a679fb4a678e53ece4193419c6 . + "https://identifiers.org/dbgap:$1" . + "false"^^ . +_:Ne545a1af974c450a87f46019ec65e8c6 "hpm.protein" . + _:N63359f48580c440aba2da2a03f0750de . +_:Nb9ae12c56daf4929b8056fed7c64884d . +_:N59d2db01e2e145d8986b36dcaa21d3ab "CL" . + "M58335" . +_:N0ee451b4bbc64761a685edb3bc2ee449 "drsc" . + _:N71f67e6603874533b9d0f187b3b79b2f . +_:Ncae1a398fccb457ba220d527cb7dc78d . +_:N9c441606434344d0aaa4057cec0155a2 . + "^\\d+$" . +_:Nbb68dd2a52014aa5b048f59da59c1cef . +_:N9291e4069462478ab2bc32a3f69bd76a "HAMAP" . + "https://go.drugbank.com/salts/$1" . + "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\r\nThe initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch." . + "http://eawag-bbd.ethz.ch/" . + _:N04436163e681432d8234a61f0b957ce1 . + _:N24948dd6e2a2428782e4ddd4587b4136 . +_:Nbbc2e2a573b349efb36df121fb88eb2b . + "None" . + _:Nb58e6069292b4eb7bfc22662b36536a4 . + "topalis@imbb.forth.gr" . + "Human Protein Atlas tissue profile information" . +_:Nfaad8a6c407c434f9df70f510b3f2435 "unipathway.reaction" . +_:Necb0716988364380941ce17185e58b1b . +_:N862c530bfd1e4641bf798c08685f1c83 . + _:N9b9bd50e2bb84b848e0dc75aa546074d . +_:Na5e74422172a43e4bfa95cbf01b4d0eb . + "false"^^ . + . +_:N202b0c0f99cb4322a0d1c6579dfddbb0 . + . + _:N05140ee6e3184478a134ca3148422fcc . + "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation." . + _:N1d33f3c858f1409b9c752b81932992ef . +_:N313f049fa07c42d2b8c4db33a79579d0 . +_:N2ef728d3e97149328e3d5cbf9da2fe65 "biostudies" . + "https://identifiers.org/storedb:$1" . + "EcoCyc" . +_:N509c5b646d2d4b19a2d91d8c11281d80 "peptideatlas" . +_:N345e94af83c24b8cb0f14a418927da5c "glida.gpcr" . + "https://www.biorxiv.org/" . + "false"^^ . + "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . +_:N5033639141384a3a9bce665c29e26be3 . +_:N6db6da6423bc4d25b67887d4a0bca78e "PHARMGKB.PATHWAYS" . + "false"^^ . + . +_:Nb1285702afbd4ef78798bedaf2722db4 . + "false"^^ . + "https://identifiers.org/chemidplus:$1" . + "PomBase" . + _:N49e58125d4434ef2b3e5383a54c9a8df . +_:N79cced6c5fde41c087a395bb63c4a246 "OA" . + "https://publons.com/researcher/$1" . + _:N593477ba105e4ff6b80fd24436836936 . +_:N6c3436fa2da046cab046c30cfd23ccf8 . + "https://identifiers.org/insdc.sra:$1" . +_:N0d3b34adc0b542bfafaa73f9e7865b08 . +_:N6ff3e81989194bc2944afcea6dd3c20c "rgd" . + "https://www.ebi.ac.uk/ols/ontologies/mfoem/terms?iri=http://purl.obolibrary.org/obo/MFOEM_$1" . +_:N66df0b60dcc249c4b430a47db0d2948e . +_:Ncaab82f9bf5f4d059a23af71cc2498d4 . +_:Nd5977cfd97d4466b8992aaea1bcd0f1e . +_:N7aba300aea5b49beb5af9dc208496ce9 . +_:N8e8fae726284458aba6815795d966913 . +_:N1d02e22c5de948cba0c0bb2295e6d998 . +_:N5b2d34296fc240f99c5d19b1e619ebb4 . + _:N8ee046eac27f4351a55c0783337f06c9 . +_:Ne96ce534736d42eb983e89e9b7025f91 "NBO" . + "0000586" . +_:N62ae50df640c4a3a9f4daccc844f0547 . + "MNXR101574" . + "^\\d+$" . + _:Na5e3b91c1b4b4bf2b1a594967966d259 . + "false"^^ . + "false"^^ . + "5HT3Arano" . +_:N32d3476e6fdf48979d1ea4b5de954151 . +_:Nfd3da05d3e7b44b0ace7fbfd36ce426b "ricegap" . +_:N7e079376a40d4bc8a8fab39e6c2a86e2 "Ensembl" . +_:N6aa48a8c17e149d3b7959f3593111219 . +_:Na65323a476cd4cf9b2d6fdb5942bc4e1 . + "false"^^ . + "sheriff@ebi.ac.uk" . +_:N403c6032e76441f7ad5caeecbd521ab7 . +_:N78082c543fc34f41922a5c64f1949702 . + _:Nf45ce894a4964066bcf217d183fa1420 . + _:N728ce796275b4863964b48c17902e518 . + "Database of small human noncoding RNAs" . +_:N13e9ce673dd44009bdebb01de73c1609 "cubedb" . + "false"^^ . + _:Nd24e10410a464a41b8c051dca91133a9 . + "^(data|topic|operation|format)\\_\\d{4}$" . +_:N8ec108ff1a354742a1f86e34e1e27153 . + "false"^^ . +_:Nc1413a4343954094ab6ad1e85af2c50b . +_:Nfce3de0116f444de9c234e245fbba73e . + "^\\d{7}$" . + "International repository of Adverse Outcome Pathways." . + _:N5287f59cb01d445e8ccd30e06bfa7f2f . + "https://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_$1" . +_:Nd0fe07d2ee0c44d8919512a1f6bdcbb2 . +_:N5ef18bff72764946b2049af377136444 . + _:N6fc67fd427474a8e808b7592459cd108 . +_:N125c33fa4486418ebdbb8ec90a500168 . + "http://www.genome.ad.jp/kegg/docs/upd_ligand.html" . + "https://identifiers.org/sisu:$1" . + "None" . +_:N90bc94e42b974917bfe4fbf08a37c220 . +_:Nd1bd265d11be4daeb98adf2207550327 "P235" . +_:Ndfb8b0672c6948b08f514fe7cde4901f . +_:Na2100f6850e84100b79df6e7d2649fc1 . +_:N135138374f76493b853f3fac24fb9305 . + _:Na280adb305d449ba8d438864b1633114 . + "https://identifiers.org/sheepqtldb:$1" . + "false"^^ . + "C00000001" . +_:N8fe7e785455047f6ba169a161fb66a25 "D1ID" . +_:N7e97240b25654edba58510586a9ef7d6 "metanetx.reaction" . + _:N7fe62b0105984f09b44d10bbb32a1a4c . + _:N95036a6d1afc4ed78b85c7c5603cd341 . + "http://pubchem.ncbi.nlm.nih.gov" . +_:Ne11f9dc43c4948989a887319421607c5 . +_:Na63317d58f52413cb92ca88d3514ec62 "PIRSF" . +_:N8fda8622a27c4aff8eb4d686ccfaa1e8 . +_:N614394e07cb94771a7a89cafc09eaadf . +_:N355e143330944ddaa4d412560999a139 "vario" . +_:N07e2969bb90745f5969dc9f8ea47e453 . +_:N63359f48580c440aba2da2a03f0750de . + "0045310" . +_:N596601e463194c57953e201b1acca057 . +_:N48a2099964e74bbaaf167dfb18fa9f59 . +_:N5fa01e16d36244b4912bac69ef062b7d . + "https://identifiers.org/microsporidia:$1" . +_:Nb2dfba330b314a1aa94ac104d6025d1f . + _:Nc7ead78f26c54aba974a4648e071de30 . +_:N9f62a552453a4867ab9c93e4cc5874c1 "tritrypdb" . + _:Nb415e3f46a784bd3a81f5790298424b6 . + "stacia@stanford.edu" . + "None" . + "false"^^ . + "0000984" . + _:N5d476f7d09d744288291067eddd1326a . + "PF11_0344" . +_:Nf4b049117c6d43b8bfc34484a1017588 . +_:N7308c3182ab54067bb0b8db847c7c477 . + "PSI Extended File Format" . + "None" . +_:N6598f9494add4988b024ba83da504b2a "biomodels.db" . + _:N365c44d91dcc4082bfe118bf28b7c8b7 . + "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines." . + _:N68eea65049f742a7a02fa0817af74766 . +_:N50f216c0096045db92f099db7638a9a6 . + "rxn00001" . + "E-MEXP-1712" . +_:N2928052771e74ef9a5da993f427862e0 . + _:Na93aa711212843539d6c51089873e9aa . + "false"^^ . + _:N4c2661c39dd64bcca13c951a8ff9b9d4 . + "false"^^ . + "None" . +_:N76c7b663427943f9abc4670955b376a2 . +_:N10a41bd70c3b464287e4638739522678 . + "false"^^ . +_:N0b0d6daeebea460f8ae0eb74db3df685 . + . +_:N1f3d5dfb7a574eda97d5cec2ce7f4503 . + "None" . +_:N8d73ac8ae58241ebb2b52bae93a78b80 . + "VEuPathDB ontology" . +_:N84335ac5b5f54980ae1bcccfff340f6b . + "https://identifiers.org/runbiosimulations:$1" . +_:Nf33a5e43e0934ba3bdb81d6a84d213a3 . +_:N86c1485056024d7396547a794cddea17 . +_:N28209c73cf5d4bbbbae27de9cdbef703 . + "https://identifiers.org/insdc.cds:$1" . +_:N372eccb23ea144b1a24154b889f74a4e . +_:Nbe72e183e00048b3a84f8ec8ca797ac3 . + . + _:N7d3e131e25e54fa7b3f33a4a36e9d3af . +_:N8a62001aff9544138fa1251f5eba322f . +_:N30c70cc8b1764735b0f8660584468e35 . +_:N05f6d331fc014c70ab92098693faca1a "jcsd" . +_:N0f1b3873aea24d2789cf486e57647e10 . + "MI\\d{7}" . + "https://identifiers.org/biosample:$1" . +_:N19a7cb2639b24536bdae5f4756c534cb . +_:Na5e3b91c1b4b4bf2b1a594967966d259 . +_:N7e779451696b4ce698462311c99695a0 . + "European Collection of Authenticated Cell Culture" . + "https://identifiers.org/chemdb:$1" . +_:Nbbc2252186ad4bd9b79f568d8fc2a98c . +_:Ncf0268af00524ec183c837eb5ce40638 . +_:Nd1e5e7677dbf47ab94d8547e678d7e43 "upa" . +_:N7dc87295db9547ad963027e8ec301f6c . +_:Nada682e4394142e88850265be1c456e5 "toxoplasma" . + "http://pkuxxj.pku.edu.cn/UNPD/" . +_:N9f58eb2dd67e47c1b4203257529a1065 . + _:N5ecb22c807ed41208f9581aa375b43ee . +_:Nd3784db48e3c4f24a3e2691166d7c7e0 . +_:N23c25f0e7d5c41ce82ac20c6a97c2f57 . + "Protein ANalysis THrough Evolutionary Relationships Classification System" . + "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm" . + "http://cgsc.biology.yale.edu/" . + _:N9030a1777fe14c53a6faad91e1a0fa53 . + "https://identifiers.org/paxdb.organism:$1" . +_:N51a763dfc61a469790f09a5bfce0216d . + "BindingDB" . + _:N4caf14be1a5a4ae1ba2349d19437d12b . +_:N83f469a2c47d43ddb5e1534bf7eadef5 "topfind" . +_:N6bf5ba0eed83426683d8d888d3aea6f0 . + _:N48e434b8d5834e888630659413fd230d . + "danielle.welter@uni.lu" . + "https://identifiers.org/hgnc.genefamily:$1" . +_:N1a5cf1dcd13140968275dd88dc6bc1aa . +_:N3ed497a648f34322a3a34beb80ab40d3 . +_:Nd943c937207d44e88a8a4639d86a411f . + . + _:N60be8fe58bc04c61b1598ea960df817c . +_:Nbe9672f17377416c949e5507f66538a9 "METANETX.REACTION" . + "true"^^ . +_:N947dc11790d04d2a82a9b44fcf8713e7 . + "^EP\\d{4}$" . + "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways." . + "Human Cell Atlas Ontology" . + . +_:Nebdaa3e9a78f43faa6879f06f9b66aa6 . + "CRISPRdb" . +_:N3f4df2a15c87461f923bb0a06031c1b4 . + "https://identifiers.org/stap:$1" . + _:N5eb449522ddc45bcae79e376ff6def6b . + _:N5f66ca86535f4746af4232bb1507438e . + . +_:N03f07bb7a04f4961bfef860dc32eb081 "P493" . + "0000001" . + "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels\u2013Alder cyclization." . +_:N4a96af6529a0486db7c78c2e7bbb7cd0 . +_:N3dfeb00c9fb5487bae56282fe80478db . +_:N3ef3f9d357cf44bfaa55a428e12f1157 . +_:Nf200c037106a4451b389e15a0a0e05f5 . + "https://identifiers.org/unipathway.compound:$1" . + "GL50803_102438" . + _:N888c4ca365824b069d56738ded1eb5f7 . + . +_:N39828499f6c546bda7f28fee6b319c0b "MOBIDB" . + "false"^^ . +_:N2928052771e74ef9a5da993f427862e0 "Orphanet" . +_:N624b04e6eb184c82b91c74875912e9cd . +_:Nee8c09b7b6e44765a1f7d15e5ff3c634 . + . +_:N7359d206964e4e979a7818af4318fc9c . + "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products." . + _:N2319db45c3bb477e98e016398e3d25d6 . + _:N94f1c346526741799e37c41ca97a276e . + "None" . +_:Ne69cf62b7aaf4843b421cb2cecf3b1d2 . +_:N2dbb8c291a384f878fc5c9f1a9ff2f51 "HGNC" . +_:N73c8fefa6592460382a50a9d3ed2fb72 "foaf" . +_:N84f89c86a61849f6b617158c8940ddd1 "ms" . + "^\\d+$" . +_:Nf3136ccec9b04c91bf969e25e2f67994 . +_:N34462d06e3b34104a6cced84ac7d424d . +_:Ncb3317a53ab0404c9ad4a30571b05718 . +_:N104a45c98cf74d7db58886ccf94071a0 . + _:N35dfb685c48d458592a218d181b0cca1 . + . +_:N3291ad41bb72489dba7abb45636d32bb "MIRIAM.COLLECTION" . +_:Nc55f978e8984433bb0c4fb9342d4f6a5 "MA" . +_:N1ceb52c768bc457e94ecbf83be96ab4c "bioproject" . +_:Nebbf4cdff6dc44eb8a530ad6266987b5 . + _:Nba954ffb4abe42c9bae4fb9478d22466 . +_:N4626faaa39614292a77559733c1815f0 . +_:Nf8adda357b0a4aefa22742975e1ffeb2 . +_:Nfbb76729fce34b61ad3b2f3bda2359ef . + _:N40df88fda60d4457b167f7806ad1a61c . +_:N8d376c31a4e2430ca2210d512ddcf09d "HCVDB" . + _:N67c70e69948b4b04909cd08115ebd1b3 . + . + "C12345" . +_:N003db58e80a2489a84da197acb8ad8ac . + "Mutant Mouse Resource and Research Centers" . +_:N97409ed999bf45e8a1b00dcb96fc5db3 "stitch" . +_:N64963c5171cc4298ba2b3d7c8f674f23 "FBOL" . + "false"^^ . + "https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe" . + _:N509c5b646d2d4b19a2d91d8c11281d80 . +_:N882541559c8649528baf3b8cf306a0ad "allergome" . +_:N26c0e60ce03949ddbf809b2a81c5fb5c . + "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." . +_:Nbbc2252186ad4bd9b79f568d8fc2a98c "DRAGONDB.ALLELE" . + _:Nee85fa4e141b4c05ae222d4d4930658b . +_:N06db56cb3b8946d7aedf6fd230422413 . +_:Nd651287881a548e5ad0bb1f3a6901816 "OMP" . + "https://github.com/obophenotype/cephalopod-ontology" . + "https://identifiers.org/gmd:$1" . + _:N515efdf0640b4129acb462fc38ddbeef . +_:N4f4d079b266c4ffda9e36d3c5bb3c328 "img.taxon" . + _:N5b246ef0360b4866a4902d33f8ef6000 . + . +_:N1d3fa651d95842c3b2402419b8ec1dbb . + "760050" . + "SPCC13B11.01" . +_:N354332e3a9bb4493943aacd477f07956 . +_:Na99f85bb64db40f48ec36fe170f39cdd "ovae" . +_:N9b495c2d5e8144bda92dfa7aef7d6ffc . + "https://identifiers.org/nemo:$1" . +_:N79072d7d1cfb4b7d8f8600c0a91d4c8a . + "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours." . + "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe." . +_:N3c9fdf1a547449adb48d4d8c4182c772 . + "EST database maintained at the NCBI." . + "https://bitbucket.org/uamsdbmi/dron.git" . + "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry." . + . + "None" . + "None" . +_:N8b0ced31dab145ffbe728d4bbeb46f75 . + "^\\d+$" . + "174" . + "DBSALT001211" . + . + "https://identifiers.org/xenbase:$1" . +_:Nd56898ea16cf4568b61bd43a80ccec71 . +_:N8fe7e785455047f6ba169a161fb66a25 . + . + "https://identifiers.org/mdm:$1" . +_:Ne75997fe12634b189e4d5e710dd6e126 "FUNCBASE.YEAST" . +_:Nc7903b5546e0452da031f8e946a232ea . +_:Nbc138365347c48219d67bd2bd8115cff "pubchem.compound" . +_:N267b770c69f94414b0a55d5140ab4bba "EC" . +_:Nf1eddd7492504b01b129f077bd5c80c3 "MYCO.LEPRA" . +_:Nb1e0969dd2a54e268d30a6c06303a52a "microscope" . + "http://www.pantherdb.org/" . + "https://identifiers.org/yrcpdr:$1" . + _:N791210333a40428b88537bd93ac1afec . +_:N225d8dca04f24ff2ac7464d8bffc2103 . +_:Na44e8919263947d29b4e68f2e7c8b135 . + "KEGG Metagenome" . + _:N4a0700cea95442d38204c90759bea97a . + "128796-39-4" . + "1-18" . + "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\"." . +_:N5fa9e384b6c04f18bacd90a681501a50 . + "^spike\\d{5}$" . +_:N640544fdf4574b97be207c3e042a8fe4 . + "ENSG00000139618" . +_:Nfd33b5903abf457eb2fbdd05d6c5b2e6 "treebase" . + "Global Biodiversity Information Facility" . + _:N40718bec5b2d4dcea9479edba9b1a26f . + _:N8ff8bc55f7234ef98c6378a56f07fcce . + _:N032351d28c50486da2bfb8f70a102543 . + _:Nbeae19dab7694fc49d27c85671e76c84 . +_:Nf86829b0e2da4d788290d4ee9a379008 . + "None" . +_:N9b125052071540008908f2259114dfb8 "erm" . + "false"^^ . + "None" . +_:N7bbc79ef2d2b46109b5c6c8823c6da15 "ligandbook" . + "MolMeDB" . +_:Nfef75cdacff14b1ea81f7c42f86bc838 . + "false"^^ . +_:Nf8c5b8b43afc400496c6fb13ce34e5be "GTEx" . + _:N2bf6e0208f3c46b3a14ffdb4a5fb8e05 . +_:N65e3223d2977407b892f41e3a94709cd "vbase2" . +_:Nbdad26c0005b448793cb1f32ce4b2c05 . +_:Nd4a0f507306e452d945b371ada521188 . + "^UPI[A-F0-9]{10}$" . + _:Nd9d8d71fe0f445109c512c52ccf34e05 . + _:Nc1413a4343954094ab6ad1e85af2c50b . +_:N3951549e824a4c27b94baa3a83d9ef41 "genprop" . + _:N7aba300aea5b49beb5af9dc208496ce9 . + _:N84684d603c194259a311d8cbe0666f57 . +_:N28c06f5a35ad4b20b244bad814fb7386 . + . + _:N60e63b4b07394b248f0800876ab710a8 . +_:N9664a7d6ef954190b1c77e2ac3044605 . + _:N31dfc30729434f92afce65821c4722ef . +_:N061a0e53917e4bc6be3524e00b8a7bc0 . + "^GPM\\d+$" . +_:N4f4d079b266c4ffda9e36d3c5bb3c328 . + "A comprehensive compendium of human long non-coding RNAs" . +_:Nd31dca0c55dc4a839dce572bed6b1f62 . +_:Nac4a058970f348cf926a013b7e6cc258 "ero" . +_:N1e75f09f2c9444db98de62b6965f0ea4 . + "false"^^ . + _:Nd4a0f507306e452d945b371ada521188 . +_:Nd073311cf4454cd696b551668b987a1e . + . + "Plant Experimental Conditions Ontology" . +_:N99d7c4231c4e41bf8e8bc314beb93a21 "ICEBERG.FAMILY" . + "^\\d+$" . +_:N5752f4045d874cff90fecee9ac78bfba . +_:N13be46b2193c4f5b80a386246e86cac4 . +_:Nff84e3a4e4a34a7ba6f74221bb67be26 . +_:Na96b4e5161ff475881f33023e1879319 . + "https://identifiers.org/metanetx.chemical:$1" . + "5621" . + _:N7fec856117fb4294b0017f1cb89bac32 . + "https://identifiers.org/bitterdb.rec:$1" . + . + . + "false"^^ . + "mejino@u.washington.edu" . +_:N0c2db33d23c6471f92f4f0f7ccab2712 . +_:Neeb212598b644712aba55ef96e4c3480 . + "https://glygen.org/glycan/" . + "https://smid-db.org/smid/$1" . +_:N37d27cd8c451497e976fd95175cfe685 "BDGP_EST" . +_:N6bf5ba0eed83426683d8d888d3aea6f0 . +_:N57a7d67e4a9b425b9b8cd7319931c020 . +_:N9a4aa9f6892548928abe0d5c94e53b58 . +_:N957da5dfdf2640708c01dd56fb827342 . + _:N2108c32a22e24fdbba8581aa967735ac . +_:Ne151a8911f024f579d3215c11e0cfac0 "phosphosite.protein" . + "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology." . + "false"^^ . +_:Nd84a6d38db024ba8bb8563eb9a169f67 . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/xco/terms?iri=http://purl.obolibrary.org/obo/XCO_$1" . + _:N936215f1111b45ffb7debc03f20f6aad . + "false"^^ . +_:N9dfb4b5be783465b863a3338f2c756b8 "ensembl.plant" . +_:N35d35dd969724cbca25ff7040dbcec99 . +_:N3eff830c91044e7091b8176d8669c35f . + "^PKDB[0-9]{5}$" . +_:N60c59271ea914bdabedb9e0fba39028d "fb" . + "^Orphanet(_|:)C?\\d+$" . +_:N84f89c86a61849f6b617158c8940ddd1 . + "Broad Fungal Genome Initiative" . + . + "https://raw.githubusercontent.com/data2health/contributor-role-ontology/master/cro.obo" . +_:Nc335e7ce4c8e45d7ac4edfa85d6b6c27 . + "None" . + "^BTO:\\d{7}$" . +_:Ndbbed642fbc547e19817ddc91f1993b7 . + "ENSG00000026508" . + _:Nea6cb7fa3daf409e895112dd9abc80f6 . +_:Nc9ae3f87817144339bfa48bd41b34446 . +_:Nbb5ab6d476b64e079bb20e860ef64cbb . + . +_:N7756fcb851e44df0a4be984b92490058 . + "false"^^ . +_:N59aa946b5b254fcf9bc519ff2b45513c . + _:Ne380742faa724d79ab781e2bedb22417 . +_:Nfd33b5903abf457eb2fbdd05d6c5b2e6 . + _:N14ed3dc74f224edd945b9b742a78357a . + "1058367" . + "Assembling the Fungal Tree of Life - Taxonomy" . +_:Nc153e64b00d7408f9ebc1159b1ac1054 . +_:Ncaae98bf242d4ce2958146d76c9077c8 . + . + "^[CN]*\\d{4,7}$" . + "IM-19210-3" . + "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms." . + _:N64e4aeabaabb48a2a0cbed49d01a0069 . + "None" . + "false"^^ . + "PM0012345" . + "MIR:00000008" . +_:N24d6e1947a37488ea88d10bcc667553c . +_:Nc35d45a975334c2580f165692718bd74 . +_:Nf22149e6330a47abb5ba82bf1a617855 . + "false"^^ . +_:N91e02b43aa18490f8952c1c4892924e2 "WBPhenotype" . +_:Nd65cfb982d5a4c4ebcf4f4c8d5cbaca9 "taxonomy" . +_:N5415db695e3f4628b40a2edd4ba79ba2 . + "https://reg.clinicalgenome.org" . +_:N9b0fc0e0f56c4faba3d6c4ab3868b5f8 . +_:N355d7c0c800847ebb811230d3fc4b4c3 . + "https://github.com/ufbmi/geographical-entity-ontology/wiki" . +_:N4e909cfbca6b4f309e5b274474752582 . +_:N0146e927f987485bb576161c02fc7b8e . +_:N54baafdd6440408d8929019bc020d3a5 . + "None" . +_:N2876b4d9e67f4255a43362c31d5c1660 "OMIT" . +_:Nd5e7d720031b41b9ac8d3efb0d6c261f . + . + "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication." . +_:N889f340812924d4b9fc7651c93ab348c . + _:N2a6871f92ed943978814a222c4c11db6 . + . + "Dictybase Gene" . +_:Ncf82a45b4b9c450cb4d7a21b6de7a2d4 . + _:N992e1d6637f24413b309776e885650c5 . + . +_:Nde840be0d20b4d0db8b6e1e8fca4e431 . + "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC)." . +_:N3cddf45781764a06908b6052b771c7cb . + "false"^^ . +_:N8495fc8b8bf64845bbdef28e68abae40 . +_:N93c2a0a434054ed0abec243e622c9011 "NCBITaxon" . +_:Nf769bdef2ab7490690f238527a3e9b83 . + "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity." . + "EHDAA:2185" . + "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies." . +_:Ne2ff16c0e2034430ad35a612dccd7df2 . + _:N78dc477b14514923861def6b27bd6aed . +_:Ncf82a45b4b9c450cb4d7a21b6de7a2d4 "PIGQTLDB" . + "2224" . +_:N24eca749706f4c7e8468f5ceb566db37 . + "https://www.ebi.ac.uk/ols/ontologies/co_334/terms?iri=http://purl.obolibrary.org/obo/CO_334_$1" . +_:N30ff736917e5422fb3692ca45785409c . + "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project." . +_:N3f9e612076734012911d0a2e45420c96 . + "PD10000" . + "E-MTAB-2037" . +_:N267693befd9147f2a4f5511a43432f62 "ONE" . + "dictyBase" . +_:Nc32c996d1afc4b89a6c50d9d4df9e391 "ECYANO.RULE" . +_:N5620ba9896174d31bb34d66aed09fe3f "PAXDB.ORGANISM" . +_:N19c51fa3ed6b42c2b2ff855e45181dde . +_:N4f17083da64e4156a05f2d24d1d19281 "TTD.DRUG" . + "TTD Drug" . + "Intelligence Task Ontology" . +_:Na7f5c8df559a4cb79c7069d14136c584 . + "true"^^ . +_:N98ad7bc51db84276930ba2dd2eaaf978 . +_:N699799359ef8439c91d6e2970bfc697e . + "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4." . + "Common Anatomy Reference Ontology" . +_:Nec45299bc1e54f3c8bf8982ee5c7d22e . + "PIRSF000100" . + "None" . + "https://identifiers.org/aphidbase.transcript:$1" . +_:Ncdccb0c4bd9141d2a94015ed34ac0dd0 "stitch" . +_:N38e64c41920e4159ab87e0bc28a1a430 "virsirna" . +_:N5def2c8ffe9e418e9d900c3ce6c073f2 "FIX" . +_:N4346551db72549b792b04b09ad0ca006 "PORO" . + "Integrated Microbial Genomes Gene" . +_:N2ff141dd4f1143e58a0427939ef4235e . +_:Ncd738344806e453b99fb485d8c10ad14 "mgnify.samp" . +_:Nf1eddd7492504b01b129f077bd5c80c3 . +_:N3f4df2a15c87461f923bb0a06031c1b4 "disprot" . +_:N38a98efbc10c4e77aec5b7962ef16566 . +_:Na0c0789644994b33a0a16a5fcb09e185 . +_:N202b0c0f99cb4322a0d1c6579dfddbb0 . + "Spectral Database for Organic Compounds" . + "Ensembl database of automatically annotated genomic data" . + "None" . + "false"^^ . +_:N71fae18547fc4dbb8391397f7162df90 . + "None" . +_:Naf14f3ddcfb14c438a1692713bc12dd9 . + "false"^^ . + "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors." . +_:Nf9a2464eccda4183b23224ad0ec43608 . + _:N60dcad7f378c402c8da98fbc3610aa86 . + . + "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections." . +_:Nb6ae6432829d43e3ab0ce427bc8e5f9e . + _:N72602d13bbfe4e09bbadfc4696541050 . + "http://www.cropontology.org/ontology/CO_358/Cotton" . + "false"^^ . + "false"^^ . +_:N3be8f991ff2f40649de52d6964d9160a . +_:N4c97ac86a14442b389378ce92527dd0e . +_:N9b7038963fb443e589f1f41412625cbe . + _:Nb02c6708ffb14a829fa84ed95f50adad . +_:Nf3cec00c84ff44138980aba811d9d9e4 . +_:Nd4af2fb99caa4b4594e1c596990848a4 . + "false"^^ . +_:N6787034b7b734a298703d2c79ab3d6a8 . +_:Ndc0568a6043748088c5d18be39f55f23 . + _:N7f70ee37e1374386969a9306e841f3e8 . +_:Nf1f8553106be48cf88a28c1a74925371 "CGSC" . + "http://purl.obolibrary.org/obo/tgma.obo" . + _:N15b0ab76e4404fc5a4585eb9152a0cec . + "Integrated Taxonomic Information System" . + "http://dictybase.org" . + _:Nc2ebbc050dc14e04804c1b51c127eaaa . + . + _:N1bea2f090c09451188a62e4251b8af4d . + "BioGRID" . + "MIMAT\\d{7}" . + "Canadian Drug Product Database" . +_:N622778198fee4607a2970c06bc70a7a0 . +_:Nfbf0048075cc4d42bfe5a3872abd5bfe . +_:N1c65b69b1d754336afb15ff111461c0e . + "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods." . + "false"^^ . +_:N6aa6fd3b42bd4dbfb55bf279cc23afb1 . + "None" . + "PharmGKB Drug" . +_:N2325daad1d7f4f65a8036720b3362fcf . + _:Nd774da32d2ab4afcbd95088220b47a06 . +_:N492d8b595fb24237a04bce5fcaa28c93 "umbbd.enzyme" . +_:N73a5bf7f831c4174b4d9783d7722e28a "chembl.target" . + "https://identifiers.org/ensembl.plant:$1" . +_:Na7f5c8df559a4cb79c7069d14136c584 "cl" . +_:N41e0bd69c8c64d4493e92209284e925f . +_:N5267a5b556954ba8b4d8c1d54b9eccd5 . +_:Nc977f42979984b418fc3efca2d070f35 "kegg.drug" . +_:N31b3d2c07dbc4d36841d9a4dc0be646b "oma.protein" . + _:N44359ba95db34caf92717ec8faa66d75 . +_:Nefaedaf016264018aee2ccfe447ad0c6 . +_:Ne892a26719464c42ae5603185440195a . + "None" . + "https://identifiers.org/exac.variant:$1" . +_:N3e282782fda74058aa0144fbaf911686 "GO" . +_:N7cb6e995c48448a99ac9c91c31d01280 . +_:Nb88b2c5086d948c8b6f665cca4912329 "DOID" . + "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00" . +_:N03f4ae15c09947f195d95176974d2004 . + "janna.hastings@gmail.com" . +_:Nd008e9bd65a14f82b505a7d6f262201d "kegg.module" . + "https://identifiers.org/biominder:$1" . + _:N5a42d254f58b4b3e885d42e7296140d2 . +_:N717ca6d2814e4ef1929a38e9d5017c8b "geo" . +_:N2c4563ff5bbb455a8fdbcedc5e658ab8 . +_:N5dd40a9dfe234ba685da08cfdb795448 "MMDB" . + "Bioregistry" . +_:Nc48df8010e6b4a119e497233d22183c9 "SWO" . +_:N40473e7a2d724b43843b62a40ad1be9f "sgd" . +_:Ned9d63a7b5db485e87ec35fb9af8511d . +_:N98565da8e0af477ebed5f60b1526a6af . + "^[a-zA-Z0-9\\-:#\\.]+$" . +_:N055efb0566a2480eae78ecc9075d4bb9 . +_:N218a8f8e47264c5db35e68df146738ab . +_:N5d3e54ee9275493eb281ccf3bb801037 "SABIORK.KINETICRECORD" . +_:Nf68d350653f841409286d87c9ce82589 "PLASMODB" . + _:Ne708ff73125e44b9bfae9022cffaf1d0 . + "None" . + "false"^^ . + _:N7adf299467c145459af1bb597e9a75f9 . + _:N715fc183968d463c8fcabd0b15d1b944 . +_:Ne7896cf685f14f12b98470f745d371f3 . + "false"^^ . + "The coding sequence or protein identifiers as maintained in INSDC." . + "Database of Quantitative Cellular Signaling: Model" . + _:Na7b4be97d7024cc79f78ac88dfbe741f . + "Cowpea Trait Dictionary in template v5 - IITA - August 2015" . + "https://identifiers.org/morpheus:$1" . + "ViralZone" . +_:N35aafd9a4c4e47819aabedd2d24f596d "paleodb" . + . +_:Ncc49ec63cb0e4549b02b11fe56c7ac3b . + _:N937ad05322344107946eaf05b36e3dcb . +_:N3cd0c2ec07a446f5899a1af27c494ebe . + . + "false"^^ . + "https://identifiers.org/classyfire:$1" . +_:Ne11f9dc43c4948989a887319421607c5 . + "https://n2t.net" . +_:N590075a9bef648309a3a11d26b03f5ae . +_:Nf82c08ebb61a4b0c8042102cd01a2e99 "VARIO" . +_:N5baa1db724c543b689cd650c476cb2f5 . +_:N410724d5262243389f10dfc2b17d2ce0 "smart" . +_:N35f30bd742b946bfa94f84c8502f0bd9 . + "https://github.com/OHPI/ohpi" . +_:N33a9a21d88fb472ebfa383158d894276 . +_:Nc04e9589a9dc451d9009071a57ebae03 . +_:N64e4aeabaabb48a2a0cbed49d01a0069 . + . + "None" . +_:N8f8b9758e164488297563d218a319351 "GenBank" . + "Porifera Ontology" . + _:Nd2f43dfbafaa407eaba1351a0e0a5941 . + "Human developmental anatomy, abstract" . + "https://identifiers.org/dictybase.gene:$1" . + "Marc_Ciriello@hms.harvard.edu" . +_:N640b034223eb44a894921b06e8bcaa90 . + _:N5abb71e526df4844b17eaa97cf83c0fd . +_:N90ddd29a109248cdaff91a27f86c46af "jws" . + "None" . + _:N8c177aff19574296bd14b874e356d31e . +_:N2d86bee4ce134d5bbff8f57251304e66 . +_:Nc8d75f149ccd4d1bba9b3f0cbe229fa3 . +_:N06c772676df14768963317c03d1038c0 . + _:N3ed497a648f34322a3a34beb80ab40d3 . + "false"^^ . + "false"^^ . +_:N0127cafdc411485280a041aab3123709 "bao" . + "85163" . + "HUMAN16963" . +_:N321a12833aa34cd3b90bb40f99dc561b "pocketome" . + "https://identifiers.org/nuclearbd:$1" . + "GenBank" . + . +_:N15b0ab76e4404fc5a4585eb9152a0cec "OOSTT" . + "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information." . + "false"^^ . +_:N306744fd6891485baa0314f63b446431 . +_:N7db542e649bf453bbf3c46f2abdab402 "GXA.EXPT" . +_:N11386df2721d409b996eb9fd12a9f13a "OBCS" . + "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays." . + "false"^^ . + "false"^^ . +_:N7f235672351a4894b6417140f19edbe0 . + "^[SCTAGMNU]\\d+$" . +_:Na68349ad9534492dae26bbb7b4093832 "P2576" . +_:Ne1f63c5865d6433ea9bac7c4f1c6c481 "cellimage" . +_:N89de4f77b5044c298453d101127661f7 "fungidb" . + "None" . + "diapriid@gmail.com" . + _:N716548378350445b9ef8d57ee0d72173 . +_:Na519e370be7743ceabe180b384f2a0db . +_:N408e07ff62814e499b57f01673aebfa9 "yid" . + "https://www.ebi.ac.uk/ols/ontologies/labo/terms?iri=http://purl.obolibrary.org/obo/LABO_$1" . + "^P(X|R)D\\d{6}$" . +_:N6271912426194d859a306b984ea6b363 "gecko" . + "RCV000033555.3" . +_:Nf22149e6330a47abb5ba82bf1a617855 "sider.effect" . + _:Na6b12a3a2e33474b9a0bd73905a7b782 . + . + "false"^^ . +_:N7e779451696b4ce698462311c99695a0 . +_:N47ea57624b624ee0829c9e490a9c9689 . +_:N323a5d970ed4491e8dc17d29b54938a9 . + "Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000." . +_:Ne771078d3d5b4dbaa3795fa069139e3e . +_:N3568d52fafd3450bbdce6fe569f64d5f "IDO-COVID-19" . + "4145692" . + _:Ne92b5a55ea4948ae8ed5bd896b7994e5 . + "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$" . + "WormBase database of nematode biology" . +_:N09acafa1962646c5b4c3285f2cf60bfc . + . + "false"^^ . +_:N702f65f3cac14c4ab8198322458c7a0c . +_:N96d6da5469f3442baacef53a0111911a "xenbase" . + "None" . +_:N7a54e1d09fa2401fb2117271fbe5bc3e . +_:Ne49579a5ccd34e4398530ace4f4548a4 "FOAF" . + "Sequence types and features ontology" . + _:N337ed5c2151d44a4a56c1448b6071a7b . + _:Ne762f0f356cb4752b981e2e8cfea6f56 . + _:Nd02590a865404912a2f8c213bfeab02e . + "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)" . + "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013" . + "None" . +_:Nfdcf2f6a6be5499d83c9e52b88254120 . +_:Ne895005481e5471eac010fbc02f792c8 . + "Amphibian gross anatomy" . +_:N120771935c0d4dc0a11212b6c100c973 . + . +_:N505e89633da94ef4b61b691e705d8477 "ASAP" . + _:N1e81e4602e914b48b428fe5ca302bd86 . + "true"^^ . +_:Nd5680130fae24b6d8e476def451bdaa8 . +_:N947dc11790d04d2a82a9b44fcf8713e7 . +_:Neb2e818566a1405cbd85df264e8c54a9 . +_:Nc7583a5c91384d9c8d27277a00187a73 . +_:Nf8d81658dc014c21a1b91c92785315a7 . +_:N2eefea3300564918ab683d6e55939a0c "DBPROBE" . + "Antibody Registry" . +_:Nedf66421528943a98205745589ae1671 . + "General Standard for Food Additives (GSFA) Online Database" . +_:N354332e3a9bb4493943aacd477f07956 "CIO" . +_:N1f8c85e279244e9ebec8471c6f06da5a . +_:N3f4df2a15c87461f923bb0a06031c1b4 . + "addiehl@buffalo.edu" . +_:N69df722cca974b768f0f25eab326467f "jcm" . + "GM17027" . +_:N29bcabd8a02d4a7dbf655ffd140b4249 . +_:N4c0650c2431e45d39bf1136ae1e1040b . +_:Na519e370be7743ceabe180b384f2a0db "INTACT" . + "Flybase Quantitative Loci" . + "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database." . + "117" . + _:N956d8e022cf9478c9b578a40a063bf81 . +_:N18961230ca284e4397b1951cac5fcdac . +_:N253c7a7c5cf749529e8033085ee32e4f "mco" . + _:N2e67d130099e43aa8df726f1adcbfa9d . +_:N455b228a47ef4fe1b27b1b36ff41ecd4 "IMGT.HLA" . +_:N2d77f58044624c2681e6727015a9c1c5 . +_:Nf7aa182e750f4f9ba4de28382494c883 . + _:N553dbee5035941fcbcdc18cc12e4652f . +_:N50ff1c8461eb406f98b3b83ac7375080 . + "JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration." . + "https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv" . + "https://identifiers.org/tissuelist:$1" . +_:N6fcadfb2fc5d4ae99bdc033a0d4450b8 . +_:Ne78b15ff7e0e437ab5e3000eb641cbe6 . + "0471491039" . +_:N19b3ec8f9bbd49e4b716b7ca8a5b3db1 "phosphosite.residue" . +_:N46c9efce09144788ade45415316df734 "FPLX" . +_:N5abe586a9a3a40a5b1ebc0b8f1170470 . +_:N7e087a58d1a8477bad9d7b86fa538da0 "gateway" . +_:N5f61c955b8e844d8880129ef1306fe32 . + "LL379-9" . + _:N2995bb78b7ca4d1e9bc972b63705840e . + "Veterinary Substances DataBase" . + "17254" . + "false"^^ . + _:N46b6acfcf7ac4cebb631d47f08b48151 . + "International repository of Adverse Outcome Pathways." . +_:Nc8f0c36dcf544ddea1a31add9f2eed0f . +_:N067d8dfb07fd4a21bbcaa6a4c048f2e9 . + "false"^^ . + "https://www.ebi.ac.uk/ols/ontologies/omiabis/terms?iri=http://purl.obolibrary.org/obo/OMIABIS_$1" . +_:N4b07372ff29c4def89704d7412f6dc5f . + _:Nb1285702afbd4ef78798bedaf2722db4 . + "false"^^ . + _:N9bd1d91961834d3fb38cf785dfa60aa2 . +_:Nf8adda357b0a4aefa22742975e1ffeb2 . + "None" . +_:N4c72a7db43ff4e2cbf37c3b25198892a . + "false"^^ . + "https://www.ebi.ac.uk/ols/ontologies/cdao/terms?iri=http://purl.obolibrary.org/obo/CDAO_$1" . + "None" . +_:N8ae0e5f0a2c042b8a3b038fb4778b4b5 . +_:Nebfb3834e8de4bcb95d0b1f287b4615f "glytoucan" . +_:Nfca19da5d2cc4360bfd3272056bf2e89 "so" . + _:N8d574d0645de448db7992734c2644e9f . + "3075966" . + _:Nfe08d17af3ab4d0981da9e7da14ec4ca . + "https://identifiers.org/vfdb.gene:$1" . +_:Ne856f73d66c542d0ad471c18c1468052 "ENSEMBL.BACTERIA" . + . +_:N23145fa936ca425fb244256f342c3138 "co_350" . + "None" . + "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure" . +_:N6278c313b2e6425f82ffd6df7fe725cb . +_:N2b39ae2a5bc84a4ebd12d56b5a376cff "bdsc" . +_:Nd65cfb982d5a4c4ebcf4f4c8d5cbaca9 . +_:N3991ca075dcf451f8b3c9900172b3092 "geogeo" . + "https://www.alzforum.org/mutations/$1" . +_:N7ac7aa7ad5db40e0a75d582c521f7097 "pubchem.bioassay" . + _:N08515055c8844de5b31d2d968cd023bc . +_:N26bfafb341f044e1ae3b88a832f4f3e5 . +_:N26b6bcbd35544a83a91e19078b3f2298 . +_:N339fe6cc92524b3e8b1ab691af31c308 . +_:Ne0e7803396544095b379c0a972c48eb3 . +_:Naf52fa41475441f89dd17542fec2c421 . +_:N6975a7df041545cc8c0d1cccdab5c923 . +_:N2299cd89e2994b0fa12fa676b827e02e . +_:Nb1a31193f6594c5cb036977036931d54 "euclinicaltrials" . + "https://github.com/obo-behavior/behavior-ontology/" . +_:N53945eb165e746beaee44c3c4c4e5ff8 . +_:N91e7679b19bc484cbdb486fde626017a . + _:N8e6179158be2458b8707e509f7f0ae8e . +_:N31b3d2c07dbc4d36841d9a4dc0be646b . + "None" . + _:Nf85abce4160e4011b1d27f4130b6c2c7 . + "http://omnisearch.soc.southalabama.edu/w/index.php/Ontology" . + "^\\d+$" . +_:Nd30c5f284f714b86836137d5bb85825b . + "^\\d+$" . +_:Neb135005b6dc42c4915fd74fb790a89d . +_:N0a31812b3fad4f9f9f3c1f5edea9c134 . +_:N4626faaa39614292a77559733c1815f0 "NDFRT" . + "hsa-let-7a-2-3p" . + "vasilevs@ohsu.edu" . +_:Nbf9b56f0b470423f8dcf1afc9daac3cf . +_:N3cb20b32163c46a2910f7c059ca9fa7e "wikipedia.en" . + "ERM00000044" . +_:Nf11d63b473404ae2b980cdfa5e1e5720 . + "^[0-9]+-[0-9]+$" . +_:Nf86409038a46471db5fe61ed81074fd7 . +_:Ne4c0c7a02be24cb0b3625787c3e75965 . +_:N4816541db8994fc08e1bcb5bab77affb . +_:N8987bad3099543f99f357240884a60d8 . +_:N7671decde6854dc286a318d53e2b2fdb . + "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands." . + _:N11373f57eb4940f9b4c60d20edec0b14 . +_:N7adf299467c145459af1bb597e9a75f9 . +_:N79627d04fc054db195c347e9acc6e1fd . + "None" . + "PHI-base Ontology" . + _:N48efc1343f67475e8dae8557faaf861a . +_:N5f6c5cdfbf8b4c33bbd719de6de2faf5 . +_:Naf52fa41475441f89dd17542fec2c421 "chmo" . +_:Ne32aed7f42574597b34bb9d6bcca3adf . + . +_:N09df55f72d2046f38c039d64c7b4b239 "EMAPA" . +_:Nee49069bff224f16ac594e27da966619 . +_:N17c80100d176465a8a2352247496901a "ADW" . + "FuTRES Ontology of Vertebrate Traits" . + _:N4f4d079b266c4ffda9e36d3c5bb3c328 . +_:N13e02bf6ddcf40fa9a53f047ac9ab640 . + "false"^^ . + "^[A-Za-z-0-9]+$" . + . + "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates." . +_:N76296288a50f44359cd1be38e108157d . +_:N14b145c4d3ad49c4aa91667ceb7e4367 . +_:N862c530bfd1e4641bf798c08685f1c83 "ensembl.protist" . +_:N14ed3dc74f224edd945b9b742a78357a "DDPHENO" . + "FBgn0011293" . +_:Ndd7810b6d6874c8caea6bc9ffc98dd06 "MAMO" . +_:N3fa1b0a74ee341d5b9840e36fd914595 "OHMI" . + "Medical Dictionary for Regulatory Activities Terminology" . +_:Nb313682f943d4b84a9b2e65bf297a7e2 . +_:N62c29c8160aa46b0a3faec728ce481d8 . +_:N3d92b75026e840b4b252d6bcee0d4051 . +_:N5f6c5cdfbf8b4c33bbd719de6de2faf5 "cido" . +_:N8b937fee15c744ed8a92f6f7bbb44884 . + "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee." . + "false"^^ . + _:N4c0650c2431e45d39bf1136ae1e1040b . +_:N2f8f2e31e9da4d7b8d572ba44649d98f "MAXO" . +_:Ne04a898ad9884128b8b1d4be78b17136 . +_:N36b41a59c19b4e5c946fec9aca407e72 "NCBITaxon" . +_:Na63317d58f52413cb92ca88d3514ec62 . +_:N6c447668eb1d4253ae76b1d0c6b9b417 "OHPI" . + . +_:N6277cc43fce94764bab51dfcc66d4b0d . + . + _:Nb516f903d44b4c8cb14ebff25e8db193 . + "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals." . + "Pfam Clans" . + "Glycine max Genome Database" . +_:Nff84e3a4e4a34a7ba6f74221bb67be26 . +_:Nbd53ca73eb664abf8da830c589cb156a . + _:N8a7bbc0367eb4477938cd72dc336ae08 . + _:N78082c543fc34f41922a5c64f1949702 . + "The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications." . +_:Ne13ae73a4e754aaab4d5162ebe22f2d1 . + "European Nucleotide Archive" . + "ChemSpider" . +_:N21583df1b70a47eb8045db4de403149a . + "CPX-263" . + "WormBase RNAi" . +_:Nce93b8d621e64a7c9f48a21e9ddeb792 "dragondb.dna" . + "false"^^ . +_:Nebef1f010e9242b69cef11a94df57b27 . +_:N3815c7cb5ce945858b0d9a2661f2f5dd "HOM" . + "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code." . + _:N50f216c0096045db92f099db7638a9a6 . + _:N5cf624d7699743d6b9e3747a8c1263eb . + "false"^^ . +_:N5e89047a7b6d4d7f833c84e90f207d88 "napp" . +_:Nc4c3cd43a9744c3fa62b2b1ecab9c38d "wikipedia.en" . + "helpdesk@cropontology-curationtool.org" . +_:N3af438364f174a37a0237c905d8f75ae "rrid" . + _:N2b48368a1af743609546e1f980fa3cb6 . + "^\\w+(\\.\\d+)?(\\.\\d+)?$" . +_:N32daa80066094e5ca987b2dabf837278 "dron" . +_:N115a07370ba7419bbb8df49a636d0b96 "scop" . +_:N92b5c54be32b41efa02e8919a8916db6 "OVAE" . + _:Nf9de609453484e21bc09be1bbf6accbf . + _:N4eefe27c74444613823355be9e2f7879 . + "^[0-9][A-Za-z0-9]{3}$" . + . + "polcaes@gmail.com" . + "None" . +_:Naab5f9055f654451aa6eac93d0be84df . +_:N6b8b9d899d6749b29e6dbf371dd5ff31 . +_:N10cede9fc93e4149a111c779ee7f4af3 . + _:Nd6cb0bb3c3de40c09d4c0327f8996b60 . + "EGAS00000000001" . +_:Nd264557ca35a426f81b93acdcd7eee68 "CRYPTODB" . +_:N18d1a4c7053e487dab802c4358633aa0 . + "75" . + _:N90733df28b614c6caf1a0ad861c977b3 . + "RepeatsDB Structure" . + "The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge." . + "yongqunh@med.umich.edu" . +_:Nf6dc5a9f76ee4d8186030f8bbeccfb7d "grid" . +_:Nb46e8cffe1234a638bb4df81d4428848 "EHDA" . +_:N39feb38f4a6c492eab4d9a3de038671d "ECO" . +_:Nefd104b4ed66483b85014041abb9615b "DPV" . + . +_:N32a75dabcf7d48699fef1e73146cb010 . + . +_:Nf200b2564eff40b3be93325ad266b84f "vegbank" . + _:N85d987fe12614a5cb0546fb30b21c7be . + _:Nc38b7f252bb948d4be23058b5c034ecc . +_:N20f14c8b012d4622a71bc33191f81a26 . +_:N7298ffbee4af490a8fc6f3c3aab9c2d8 . + _:Ne32aed7f42574597b34bb9d6bcca3adf . + "^\\d+$" . +_:Ne37dbf4413fc4ea2b4f91c7d2a033ac4 . + _:N493a61e1743d49eb9fabdb8f302a11ac . +_:Na9ca0e1443994d01a34c49549183d3cd . + "https://www.ebi.ac.uk/ols/ontologies/sio/terms?iri=http://purl.obolibrary.org/obo/SIO_$1" . +_:N622a7778f7b14162accd9c403fdb5f91 "ECAO" . + "https://identifiers.org/facebase:$1" . +_:Nd98b3eaa973e4bb6b5d1636c8a6fb148 "fairsharing" . + . + "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB)." . +_:Nf9033b14674044899a9db6707d2c2dd8 . + "^\\d{4,}$" . +_:N2366dc52b8f24c58a6fe8dd53cd8b494 . +_:N87b0e1677b964bceb0b36ee11cd19e82 . + _:Nef49ba06e02541adae75ca5dca956a24 . +_:N5eb449522ddc45bcae79e376ff6def6b . +_:N32cd267605f44a18848372d5fddec167 . + _:Nc8379d73c2744a94a75dfe1f6c8d9c2c . +_:N5d163b2df4c648d6b19645489ab8dad9 "massive" . +_:N664823fdf7c54d128cd718b02f85d1fe "DisProt" . +_:N020abf6bfce54d76bb9366614aa89b39 "yrcpdr" . + "false"^^ . + "^(doi\\:)?\\d{2}\\.\\d{4}.*$" . + _:Nfba2cc228da441baa4e8c8010dfe152a . + "Terminologia Histologica" . + _:Nddbe40c14fd446c892222b256b232a4f . +_:N224ef3290e2246baa4ea6d1e88c3c8d1 "spdx" . + "Aspergillus Genome Database" . + "None" . + "Zebrafish anatomy and development ontology" . +_:Nb564fba508a944db9ce629fd1af556af . +_:N86b2ce9ef34a47469535068c27e73566 "AFTOL.TAXONOMY" . + _:N44ba8e25fd9441028f2f5fd62bc8581d . + _:N9664a7d6ef954190b1c77e2ac3044605 . +_:N30b300e7c34342358193c71c787d5330 . +_:Necde56132d744b3cb10aaa44740288a1 . + _:N1ac7404b56fc4e358b3e21a9b03f7763 . + . +_:N3df5ba5ed890426a9e9dff58105a84c5 "ontoneo" . + _:N1ceb52c768bc457e94ecbf83be96ab4c . +_:N032351d28c50486da2bfb8f70a102543 . + "2.1.1" . +_:N0d291347d56041d1b029237a8f3ed22f . + _:N11dcb98434144f8e9825ca72f8d08a62 . + . +_:N7d3e131e25e54fa7b3f33a4a36e9d3af "OHD" . +_:N5805a07526644a559ae7587ff6827d5a "ASIN" . +_:N32c6d012614e450e932e5c056ade85b3 "MIRIAM.RESOURCE" . +_:N97543da0a3994c94b8d3de9cd7c5ce5a "OMRSE" . +_:N05d7983d1b2a42f785a4cca5cd36416f "aop.relationships" . + "false"^^ . +_:Na1bbd468397340c1b1e9c55784929395 . +_:N21b125f1ad14411087a9668d58e59426 . + _:N0da1863a61c048ebb487fea4a5bd3e7c . + _:Nf50fbd8255724c19b09939923f406198 . +_:N697593c66ca449168b5dc2171fe6d531 . + "None" . +_:Nf59e996ac87b4a0884a409916cdf3820 . +_:N092d178583694cce922c3144c996d811 "DrugBank" . + "https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo" . + _:Na388703ca5e34bc39ad46f58e88ab2ae . + "Yeast Intron Database v4.3" . +_:N5287f59cb01d445e8ccd30e06bfa7f2f "cellimage" . + "None" . +_:Nd083ba5fa9a0442b82850f69a81e323a "pw" . +_:N773ec9077dc14b548a21e115df8c1fb1 . + _:N162eb5e296a046049ea6203e29c01aba . +_:Ncc18caaa7ffa49969433775f1fab6270 . +_:Nddf07a489c5e434d9560c88d2641d28e . + _:N192c789ea5fe45ba82ff48c1dc5cea98 . + _:Na9f92c0edcef44c99f39ffce4be611b4 . + _:Nd8b214182fb8404c8d1be69a6c3423f3 . +_:N11c317245c0b429d94b1e0d55cfe3551 . + "The Virus Infectious Disease Ontology" . + "3966782" . +_:N5abfeb9a9bab48db9bcce98639f6c572 . +_:N120b4f2ecd5b4368a813a30114548ce3 "OHMI" . + _:N41ad9a268bd1433081c334540ee0fa78 . + "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information." . + . +_:Nb72b23f400f04e9a892b49bc339c045e . + . +_:N8942d9255b1c45dd82b98e686b917476 . + "https://identifiers.org/uniprot:$1" . +_:Ndd35373e88bc426a918917a43dd83ccd . +_:N28c06f5a35ad4b20b244bad814fb7386 "co_356" . + _:N40a05f22345d46b0b0a3860ef15b96e7 . + . + . + "https://raw.githubusercontent.com/OmniSearch/omit/master/src/ontology/omit.obo" . +_:Nc2ebbc050dc14e04804c1b51c127eaaa "VIRALZONE" . +_:N79072d7d1cfb4b7d8f8600c0a91d4c8a . + _:N5449cb69b67a4c0ebbc05baa6f8eec8a . +_:N9b6070b1a9fe4448976b74eb6983b8d0 . +_:Nf1d924fec68e4208bb99c02ad8a1fcf4 . +_:N361e5affaf26473488134b1d254227a4 . +_:Ncd823ff23f044bdc9d0f3e0ae3e84260 . + "false"^^ . + "0002502" . + _:N2600717678a14e5297bbb6d6e414b694 . +_:N93db6d1ee4a147b09d556cd89f5e29d2 . + "false"^^ . +_:N005aeea54d1b4e6fbd8387745c0491ab "doid" . + "None" . + "https://identifiers.org/apid.interactions:$1" . + "High-quality Automated and Manual Annotation of microbial Proteomes" . + "https://identifiers.org/tigrfam:$1" . +_:N5755216235294d71a513e934d74787f3 . + . +_:N8411e26602a74c909df525e9fdc1bf80 "HSO" . +_:N2ee972084bd241859f5af66405574477 . + _:Ndb7e5fc5540c49ecb76709cf8fca9e51 . + "Q-2958" . + "0000001" . +_:N3984ebda21304b25b6aeed3951b12943 . +_:Ne380742faa724d79ab781e2bedb22417 . +_:N72d26e6ab5be4050905fe2cc8c06e961 . + "https://loinc.org/" . +_:N5cf624d7699743d6b9e3747a8c1263eb . +_:Nc0d833e9cb664195b674833b059ee5bf "P595" . + _:N96df64d8a6cd4c71ba7aa5eefee82fe1 . +_:N2c4563ff5bbb455a8fdbcedc5e658ab8 . +_:Nf781ba4d42be45f5a917392b880fbeeb "RXCUI" . + _:Nc91fd7bd6b854d3b94e15efba9ad21ec . +_:N72face36a5f34d06ade62aecce227278 "MIRBASE" . +_:N2bd08cc7f2da4c4f864bcc070fe22855 "SEED" . +_:Na2fa668ec9a945c7a262c1d31a8eca89 . +_:N66aef776d24640c28d93ca52d10b326b . + "WGS84 Geo Positioning" . +_:Na621025518924fae95303b47b92bcb23 "hdr" . +_:N01ec2b9ef4b1437eb3dcf29fa25beb81 . + "http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1" . + _:Ndf972beb78f941589f1a64e1ac016baa . + "Charles Tapley Hoyt" . +_:N544952f6e754449db545da3e30d063c9 "INO" . +_:Nb07db8d85c974ccca983365be5752541 . +_:N863ee136207f491bb0e5e7dd54e09fac . +_:N63fee6d2ddc3449f88bea29553a96cce "REACT" . + _:N8508ab4c454543fcaf5ab3c699277b78 . + "http://www.cropontology.org/ontology/CO_339/Lentil" . +_:N31544f1720da4e938711dca47dd66850 . + "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database." . +_:N447374c435824c56ba3445799ad69f9a "micro" . +_:N974e88f25ab145538c92bd0567910d0c . +_:Nd4529167aa644b3eb719224627c2b82a "CHMO" . + "https://identifiers.org/gabi:$1" . +_:N065c8d4b17f34b7ebb306b731394ae34 . + "PED00017e001" . + _:N839f5b9f6e4d451eaf1ef9dafed7bfc0 . + "US4145692" . +_:N90e3371da6b44d8e8a2522f93d0d0de4 . + "URS0000759CF4" . + _:Ndd35373e88bc426a918917a43dd83ccd . + "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser." . +_:N22debf0534a543ac8bd37b7233a1f143 . +_:Nb46799535cbc4649a14552957eaa5d63 . + "NeuroVault Image" . +_:Nfd0ec11e5a53471394f5f6c155b20971 . +_:N5610785790434ae790100304cdca47d0 . +_:N5287f59cb01d445e8ccd30e06bfa7f2f . + _:Ne3393f00567040acabe21b35f95da854 . +_:N45c2479ecd96428aa2705d908a99f380 . + _:N9317a57cf53746b4b32b0632defec679 . +_:N3df5ba5ed890426a9e9dff58105a84c5 . +_:Nbfcd987067e94ab2a8a3d66efe745597 "funcbase.yeast" . +_:Nde85281448ac415798bffd45a69c0231 . +_:N729e3df9cee84b5289c1caf94c7b90af "mipmod" . +_:Nd5d9234491fd4687ac4b7b69c7b20dea "TOL" . + _:N4e84010357514ad0ad182a41eb75e04e . + "^(D|PP|R|T|H|X|AI)?\\d+$" . + _:N2c74e6536a7640da9829a1db86b3561c . +_:Na5fd9900a87a490e8e22efc24b6ea48c "GeneID" . + "408" . + "^PA\\d+$" . + "11303" . + "Flybase Cell Line" . + _:Nca6b27c8755e4fceb590f12deaba6617 . +_:Nf78725e11a2f42f7a98b81f71e307e81 . +_:N7ec8c3c83a4c4308ba28b74ddccde4b7 "SWH" . + _:N3b522cb46ed346fb90b2ca5fb80dc94e . + "None" . +_:N3fde1a2294ad4d058c7ce8686cd64374 . +_:Nf03ad73e72f14eb6a9ab4159846fda85 . +_:N03f07bb7a04f4961bfef860dc32eb081 . +_:Nd0d6b48ee9224b3e9553d02608faa3f5 . + "https://identifiers.org/myco.marinum:$1" . + "false"^^ . +_:N8f786b8d2e0b4bf99f4a6923213ef603 . + "MarRef" . +_:Nf06937b650cc4b9c8c8b476b4f021d0a . +_:N24016b4535b14b2bad8a8d417ea26f48 . + "false"^^ . +_:N593477ba105e4ff6b80fd24436836936 . + _:N652c67cd8a8a4d81854b26eebfa8099a . + _:N7a1b545836704a7c9936c72bf3357aff . + "375364" . + "false"^^ . +_:Nc0710d8f93504fd1a779cf43b5799797 "OARCS" . + "^\\d+$" . +_:N20fe3cfbe4bc459f8ea76dde253f81f8 . + "MetaCyc Reaction" . + "false"^^ . +_:N40532a85852e498bb5efa9397f28ef11 . + . + _:N8acd145536574d5583ad61c1bca0ec12 . +_:N306744fd6891485baa0314f63b446431 . + "Monarch Disease Ontology" . +_:Ne93d354b97cd4eb2985480da65284f40 . + _:N0d291347d56041d1b029237a8f3ed22f . + "BioPortal" . +_:N87d1c357772b428a8dea1597afa531c4 . + "None" . + "0005452" . + _:N72face36a5f34d06ade62aecce227278 . +_:N6ef46042796f440dabcf977213eae595 . + "Drosophila gross anatomy" . + "https://identifiers.org/icdc:$1" . +_:N2847c10d0eb042388a1c5d6ffde69ded . + _:Nf3e149c5a6134f06868d895140049f59 . + "0005067" . +_:Nad42637882094a00b0fb382edfa60afb . +_:N702f65f3cac14c4ab8198322458c7a0c "MAMO" . +_:N40a05f22345d46b0b0a3860ef15b96e7 . + "15000" . +_:N64979aa921ce411a933b863a6b537897 . + _:Nde98f3e8254d4bb79611b229db311f7a . +_:N17c80100d176465a8a2352247496901a . +_:Nc62deebe6ace4920ab7fba6581377589 . + "snoRNABase" . + "https://identifiers.org/biosystems:$1" . + "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments." . +_:Na5b48cbb7b4c479b8cee9ca6ba0330ba . + . +_:N8d65c06c4ba048c5bef45d6ec4ef9a6e . +_:N536d0cdebd57448a8548e31739dd7cc6 "OGI" . +_:N02b2bff400124f3d8cc411c4ff55e9b3 "CABRI" . +_:N29db90c757fe486ca5f9a41ba9f12cf6 . + "https://www.ebi.ac.uk/ols/ontologies/co_348/terms?iri=http://purl.obolibrary.org/obo/CO_348_$1" . + _:Na14bdd0b1c3144f08293ba707ac828a5 . + "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier." . + "^\\d+$" . + "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process." . +_:Nac4a058970f348cf926a013b7e6cc258 . + "None" . + _:Nd89c0d568d864590879d9115a7e1dbd5 . + _:Nb875a74f6e454866a4668dc45a8d8d41 . +_:N267a71fbc3c4488aa9a798d65281fe90 . + "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies." . +_:N008218aad4e14a4998886befe9aaffb7 . + "https://identifiers.org/resid:$1" . +_:N1ebdf534165545cb91f54beee93ed9f5 . + "FAIRsharing.62qk8w" . + "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment." . + "https://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_$1" . + _:N94ddb01e2d554a3fa0649ac403071a08 . + _:N7a6be50c636d45de8afff291b21a46fd . + . + "3DMET is a database collecting three-dimensional structures of natural metabolites." . +_:N1897871aea424a27b560107be7cbd992 . + "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions." . +_:Nef1081ecca67416ea668afead073e068 . +_:N4bc88d1ca1dc49dbada17959b03f2aea "oryzabase.stage" . + "The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project." . + "false"^^ . +_:Ne12a897ed43643daa0c8507d9bfa580d . +_:Ndf1f12341a534dc8b30f9b49d8b8875f "MOLBASE" . + "None" . + "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it." . + "^[A-Z-a-z0-9]+$" . +_:Nc7583a5c91384d9c8d27277a00187a73 . +_:N0aad24f38df746f89f2df1efafaca908 . + "kronkcj@mail.uc.edu" . + "^ENSG\\d{11}$" . + "Teleost Anatomy Ontology" . + "0004486" . + "https://identifiers.org/issn:$1" . +_:Ne2b38b301c4e45bbb0914d6ef27da749 . +_:N36b41a59c19b4e5c946fec9aca407e72 . +_:N03e569e011584982a5d01e2b497073e0 . +_:N5a1fe75009504de4b46c8c61a6a61d11 . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." . +_:Nc1431de684b843f9b2e23173b3663944 "pmdb" . + . + "false"^^ . + _:N97c6bdb8047e41b880c056b44d561de9 . +_:N52fec8905ad74f48b5ffc646500ecf94 "co_321:root" . +_:N5f3437f3d03d46ee9a36186c0c16a717 "go_ref" . + "https://identifiers.org/datf:$1" . +_:N98b926fed6614cce99ce0b238135fa37 "bindingdb" . + _:N7e32e1ed31af4026b082674d7e02f0fe . + "https://identifiers.org/prosite:$1" . +_:Nfcfc70aa95fd4d999c722ca18324e671 . + _:N53945eb165e746beaee44c3c4c4e5ff8 . +_:N146d4ed0323a4445aba657362eec2209 . +_:N2a3eb5dc7c1d4ad3aab2523cfa36dd9a "OGMS" . +_:Na7d0740be17d43669e11f88be73e54f9 . +_:Nd4529167aa644b3eb719224627c2b82a . +_:N9280ba9491d74bc2b799d361c62ea5ac "OGI" . + "http://www.ebi.ac.uk/cmpo" . + . + "^\\d+$" . + _:N5a171ec989b9441993c88f6698e031d2 . + _:Nbfcd987067e94ab2a8a3d66efe745597 . + "hsa00190" . + "helpdesk@cropontology-curationtool.org" . + "https://identifiers.org/coriell:$1" . + _:N372eccb23ea144b1a24154b889f74a4e . +_:N23e1d8616fd5403b98b89a0561232296 . + "Human Ancestry Ontology" . + _:N164449f86942404a8e5af733514cf7bf . +_:N98ad7bc51db84276930ba2dd2eaaf978 "pubchem.bioassay" . +_:N51b9555d52774d41be34b2033225166d . +_:N1c9e5ce2fbd941378a0611e3d8a79286 "tair.locus" . +_:N8acd145536574d5583ad61c1bca0ec12 . + _:Ne72300ff0a2e4097b7a78fdd194d6813 . + "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER." . +_:N26e059824d9c4319ba8f360e20cf38fb . +_:Nda2e9e6278eb45cbbdc2f05f9c56b3cb . + "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe." . +_:Nf489ad15476949ad8bcf32122ebc1d1a "cameo" . +_:N42394ee9ddd84f42a5d7b1e733be998d . + "http://www.ncbi.nlm.nih.gov/projects/SNP" . +_:N6238198377c342e6b92a5629ac801b0c . +_:N2299cd89e2994b0fa12fa676b827e02e . + "Ontology for the Anatomy of the Insect SkeletoMuscular system" . +_:Nd7e7898ab84749d09f69778f5513a8dd "dpv" . +_:Nde85281448ac415798bffd45a69c0231 . + "None" . +_:N5828c5ea542f4617b1e9f1d999790695 . + . + _:N505e89633da94ef4b61b691e705d8477 . +_:N1afb14010c0f48f1a4f88848c97a3cdb . + "^\\d+$" . + . +_:N60874712f4d943c68d9c94db44f9496a "KEGG" . + "https://github.com/IHCC-cohorts/GECKO" . + "cgd7_230" . + _:N061a0e53917e4bc6be3524e00b8a7bc0 . + "^\\d{7}$" . +_:N31b3d2c07dbc4d36841d9a4dc0be646b . + . + . +_:N4320457477d64cb8a02d58c552439134 . + "https://identifiers.org/kegg.metagenome:$1" . + _:N86c79df87da640be9b95e15c210000e2 . + "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1" . + "false"^^ . + "None" . + _:Nd1327da44d344b6eaf5843d649f19e39 . +_:Neb135005b6dc42c4915fd74fb790a89d . +_:Nfbe097d7e74a40da9ca97b4ae656efa1 . +_:N2b391fd5963e475b9c380c052b34db86 . +_:Nab5a3a77c6d946acac03d8d92fa8d745 "ZFIN" . +_:N437906cbf04b4deaa1ce22e58219eb38 . +_:Nd762fd1928764113854c5e34db862e30 . +_:N7f5a30b414964015809a1dff862fff1e . +_:N97409ed999bf45e8a1b00dcb96fc5db3 . + _:N1363c706f5134c61a9dc3d7ebbcd94e5 . +_:N52e1b1b710cc4459af606dd5754fad54 . +_:N8987bad3099543f99f357240884a60d8 . + . +_:N363238435e604c40a221580b15889143 . + "ACYPI000159" . +_:N30469ae779254e45b28628c629fb2819 . + _:N07ccff1dbd11445bbb5344629fe597c6 . +_:Ncd2f541fb2864f1b98fb33326966d3a5 . + "https://www.ebi.ac.uk/ols/ontologies/aeo/terms?iri=http://purl.obolibrary.org/obo/AEO_$1" . +_:N2f65b03ff7954df491fa609271cfc2bf . +_:N35e231fc3ea34a2eb9d106c3cd2d356b . +_:Nbbebf3a88e05429faa063c858ba17dd4 . +_:N0676118ead1c4c1ea5ad6b30631b8995 "rex" . + "https://www.nextprot.org/term/FA-$1" . + "http://www.w3.org/2002/07/owl#$1" . +_:N5d636c0fef24467994c25a000edc8541 "ordo" . +_:N4570892026054af997ebc5af8dea465e "IDOMAL" . + "https://identifiers.org/hpa:$1" . + "false"^^ . +_:N46e757c864f1482dbdc184c735a61772 . + "https://www.ebi.ac.uk/ols/ontologies/rex/terms?iri=http://purl.obolibrary.org/obo/REX_$1" . + . +_:N3e528d3797de47bba86d2ab40196e725 . +_:N715fc183968d463c8fcabd0b15d1b944 "MEROPS" . + "Biological Imaging Methods Ontology" . + _:N65e8379582234049b1e88ab1f073e82f . + _:Ne570a2a0479a4a768720980608a1095a . +_:Nad46ffa23356460d92cd5cd943527457 "P683" . +_:Nb822aca4c83a4b70ad49a34d3cefdcbb "OlatDv" . +_:N14c08727ee9f4d11bae8c77e6225b180 . + . +_:N0bba5aa79eb141dbae0ff4ab1e848447 "BIOMODELS.VOCABULARY" . + "^MMP\\d+.\\d+$" . + . +_:N4b59b891111e4cfca1a7edc28acdd398 "PO" . + . +_:N62c29c8160aa46b0a3faec728ce481d8 . + "https://identifiers.org/vgnc:$1" . +_:N455aac4eb2cb4c0c95ffb5e8051ac4fa . + _:N193384c354a043ba998f497e5f1b3aff . +_:Nc3d2244d7a2445e2b3d2998cb431de61 . + "^\\w+$" . +_:N5ef92a05e8ab4dbc8fd57ebf7a108395 . +_:Na936daaff55e4bdc91742f1e69dad902 "BRENDA" . + "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology." . +_:N319a44f69562452ab8ef81d0e2053292 . + _:Ne0d58ea4554f4334a4a27cfc6fe0ba13 . +_:Ncb4d042baaf5467688e1ecad71985410 . +_:Nd264557ca35a426f81b93acdcd7eee68 . +_:N1897c76731e548febe6646188fc1699d . + "ChEMBL target" . + "^CONSO\\d{5}$" . + "0000000" . +_:N2a683facfcd0463b80f785b35d5415ac . + _:N8ae0e5f0a2c042b8a3b038fb4778b4b5 . + "^[AEP]-\\w{4}-\\d+$" . + _:N1b53b76fdcbc45b48385d152888f42fa . + "false"^^ . + "^\\d+$" . +_:Na3d0761e095243109fb08b5a38f69ab3 . + "https://identifiers.org/dandi:$1" . +_:N667ccf0d4f1c4d2a87ea3cba1db6032c . +_:N877c48fdfdfb45198051bc40c4a5c7ca . +_:N21583df1b70a47eb8045db4de403149a . + "GWAS Catalog" . +_:N2f2acd88caa94ac2a96633712c57073e . + "^[0-9]+$" . + _:N79cced6c5fde41c087a395bb63c4a246 . + _:N6c447668eb1d4253ae76b1d0c6b9b417 . +_:N310a14bb296740e1a0a48f46faf0a2d5 . +_:N7d42467cccb94a148f2aa536303c8c6f . +_:Ncfda8f9bb4ea47278c38053aaea79b92 . +_:Nebef1f010e9242b69cef11a94df57b27 . + "https://www.ebi.ac.uk/ols/ontologies/xpo/terms?iri=http://purl.obolibrary.org/obo/XPO_$1" . +_:Nbf9b56f0b470423f8dcf1afc9daac3cf "METABOLIGHTS" . + "DP00003" . +_:Na8e61fc3b9af4b038a994d1636edcac3 "minid.test" . +_:Nab09337dde314e23a8837992bb5f55b8 . +_:Nb564fba508a944db9ce629fd1af556af "ISSN" . +_:N5f293e52ff4a4e00b2883ee52edbd429 . +_:N5ef49c39fa8e4408b6b8d107858616c6 . + _:N1dac12f89e0f45099b56f4ba279b498a . +_:Neaa68e2b80d94e38bf60f23ad400362d "apollo_sv" . +_:Ncc49ec63cb0e4549b02b11fe56c7ac3b "PATO" . + "Oryza Tag Line" . +_:Nbe5f345e330a4e8180397c50c1b91a72 . + "false"^^ . +_:Nb517abdbc380402fa4b22c97b66e1896 . + "false"^^ . + "cjmungall@lbl.gov" . + "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility." . + _:Nca412814693e45e693942494a16d9ad8 . +_:N11274d1d2fd94996838431625ee3c127 . +_:Naab5f9055f654451aa6eac93d0be84df . + _:Ne295782a27d542cc9f96fa0f7c4ab7e9 . +_:Nc76b30f287e445bda1be7eee3f83aa2b . +_:N60be8fe58bc04c61b1598ea960df817c . +_:N44b07bc1622f421e97f89697a42a7c06 . + "0000069" . + "http://probonto.org" . + "https://www.uniprot.org/locations/SL-$1" . +_:Nd7bb90bf128848db8cf259384a834911 . +_:N8730ffe23764496b94649f3643c13ca8 . + "false"^^ . +_:Nfa29d24b50b14399a6c3538dd1096fdc . + _:N1aeb4b46bce24125929922c5625d3b92 . + . +_:N0d2228ebde684837802eded67aca3402 . + "MI0026471" . + _:N07a2c9ded8a9468183f520a5134f3675 . + _:N0462cd92567c40feab2dd5fd0c59431a . + "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.\n\nThe TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.\n\nIn applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp" . + _:N702f65f3cac14c4ab8198322458c7a0c . + "Ontology of Prokaryotic Phenotypic and Metabolic Characters" . + "78073" . +_:Neffe489d8ca4421c84745a9cd2a7cf5e "phytozome.locus" . + "mhb120@gmail.com" . +_:Nf755d864e0be4bd89147233a7844ff38 . +_:N089449f5ff1a45dfa3a7c8548852281a "P7718" . +_:N79f7f02d40dd4bad81f1677ac882ed5e . +_:N1535adae405c4fda8e2de017844ab66a "fbol" . + "https://www.ebi.ac.uk/ols/ontologies/sdgio/terms?iri=http://purl.obolibrary.org/obo/SDGIO_$1" . + _:Ncaf07e3dc65146b4aa59dc50d9a9adb8 . +_:N83259a18a1184b20ad91f57d5b6e61c7 . + "K00973" . +_:N4fc37fbeba4e4966bfcc952d2109ff27 . +_:Naddb08f01e7b4a1daed40db479bd9c94 . + "The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions." . + _:N9834464effb3400681dbebe097d8dd77 . +_:N83f18a32ca93429b9bc64a20b9de5b69 . + "false"^^ . + "19333" . + "^\\w+$" . + _:Nd4c761c6c7dc4b2ebfd69b6065856ac4 . +_:N87b0e1677b964bceb0b36ee11cd19e82 . + "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization." . +_:N60dcad7f378c402c8da98fbc3610aa86 . + "^\\d+$" . + _:Nfef75cdacff14b1ea81f7c42f86bc838 . + "Cardiovascular Disease Ontology" . + _:N7ceeb713ba45458487ed25c7730e032e . +_:N3dfce6339c4447d990ec1fa5c85cb74d "PDUMDV" . + "ClinGen Allele Registry" . + "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis." . + "^UPC\\d{5}$" . +_:Nf85abce4160e4011b1d27f4130b6c2c7 . + "None" . + _:Ncae1a398fccb457ba220d527cb7dc78d . +_:Nfb71b28188a446ab9b80b12fa2c77eac . + "None" . +_:N4742592f576d45f19b851d4bdbb3ba30 . +_:N38a21ba401994eb5b15a986efd37caad "GlyGen" . + . +_:Nf1e2e126374c498c86efba0d07be6da4 . + "chebi" . + "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form \u201CPREFIX:ACCESSION\u201D or \"PROVIDER/PREFIX:ACCESSION\u201D commonly used to specify bioinformatics and other data resources." . + "Nucleotide Sequence Database" . + "None" . +_:N1f2283aea700427b94483c979d2e74f2 "WIKIGENES" . + "Oryzabase Stage" . +_:N31d1258994144cc8be7654ff7a988c67 . +_:N029a2f9a7a674d42b0245e58f9e8c906 "HMDB" . +_:N491f8e1938c5424e9065aaaa820146ab . + "Saccharomyces genome database pathways" . +_:N3ac4ecff269f47d299609dab38f43cb6 "ensembl.plant" . +_:N55340fb273184a1c9634d7feaa41b491 . + "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments." . +_:N7adf299467c145459af1bb597e9a75f9 "vt" . + "false"^^ . + _:N51298b78bf604154a89e8932f7b1dc3c . +_:N39c0f5aa9f7a49f587c76cad457c52c5 . + _:Nd36d36c03f5041f5b3bfad3fd819d9c2 . +_:N21b125f1ad14411087a9668d58e59426 . +_:N686519e4e3ee4619b9bfa9f8f1238a4d . +_:N8c177aff19574296bd14b874e356d31e "CORIELL" . +_:Nb73511ea1f704e3d9a362feada7d7bd5 . + _:Na9bda41ad9ba45fe95a413a6fac55691 . +_:Na936daaff55e4bdc91742f1e69dad902 . + "10b38aaf-b977-4950-85b8-f4775f66658d" . + _:Na325059a1bea497f911bdc0d49e347fb . + _:Nac8917df455a4c6f9210cb84ddc45743 . + "^IPR\\d{6}$" . + . +_:N76fe3058ee2e4fb3aeadac541d19b860 "CAPS" . +_:Ne5c954e6d3424daf9976367fe60760bc . +_:N4ed56ed51fd54850a5ee138a76be959d . + "Cotton ontology from CottonGen database - June 2019" . +_:Nc38b7f252bb948d4be23058b5c034ecc "protonet.cluster" . + "Cowpea ontology" . + "^\\S+$" . +_:N575376cffe8b4341a40d43f2bf3eaf90 "unite" . +_:Nc6f01b6494294af0b8aeb9e61787bab6 "hgnc.genegroup" . +_:Nd17fdf20e3ce472e8d142b9b91c40b05 . +_:N28eb7697f1be4062b3b5adbeb58268c0 . +_:Nddf07a489c5e434d9560c88d2641d28e . + "24867" . + . +_:N34462d06e3b34104a6cced84ac7d424d . + "An anatomical and developmental ontology for ctenophores (Comb Jellies)" . +_:Nbf5387235ae6425796f549b9f0dd485f "xpo" . + _:N23a42054bf754da186d6c11aed04410d . +_:N1b53b76fdcbc45b48385d152888f42fa . +_:N3a78565a506e4374a2030d4864f821e2 "atcvet" . + "false"^^ . + _:Nc0a6a2cd57bf47ae90b6274eb0b9bdae . +_:N2cf8356159144eb4aec56e32d550e7a3 . +_:N55807696cb6c40ed88db637f42279b58 "PMCID" . +_:N532ff7ebb6f6446b880d73a3d9ffa8d6 . + "false"^^ . +_:Neaa407c4ccdb4addbfe7516c147b3a79 . +_:N49241166c5dd4492ac7403c2ce1e33d3 "pdb" . + "Sept 2020" . + "CHEMBL4303805" . + _:N6754eae8b2ba4eda9f97849935ef7a6f . +_:N021698e78a8446c5b0973d9be5dd7375 . + "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences." . +_:Nac52d80dc2c8469f98fcc2adcbd666f2 . +_:N49d788d083e74a20a4d40dd53e7bee94 . +_:Nb0e5d698f3634ffbaa3360e39ea64c4f "HP" . + "http://drugcentral.org" . +_:Nc544bdde24ef40b386ed27a12a97c6cf "EHDA" . + "UniRule" . + "false"^^ . +_:N8c5c7cf79b4b4c7582a214f4db53ca42 . + "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance." . + _:N0577be01af344496ac33bfd4f91da99b . +_:N3d954942b7bc450cacba12d1878179f5 . + . + "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease." . +_:N1afb14010c0f48f1a4f88848c97a3cdb "STATO" . + "false"^^ . + "DICOM Controlled Terminology" . +_:N44359ba95db34caf92717ec8faa66d75 . + "Store DB" . +_:N46dcdbddcb1942f0b79061945fd06503 . +_:Nfed4de3661b84648b10daf36aa6283d5 "kaggle" . + _:Nf1eddd7492504b01b129f077bd5c80c3 . + "C6155" . + "^RCV\\d+(\\.\\d+)?$" . + "International Classification of Diseases" . + "None" . + . +_:N21754c88bb2440e1a3b2a2596876536e "cellosaurus" . + . + _:N7ae65433d3344bd78cc8552ad1faafa5 . +_:N84cd67bde87a436291184ca53db79a64 . +_:N81ce6a32173749dcbe8191f8a243160e . + "^\\d{7}$" . +_:Na9467ae1f86c4b2b9a95ba8582100fc8 . + "false"^^ . +_:N02d95146905e47148382c08b8b519a65 . +_:N73a0d744f49540c9bfc86b861b99100e "COB" . + _:N2a26e73621444961af1cf61b3dde7155 . +_:Nf4bf294da0824f849f6ad26e82e04678 "ZP" . +_:N0db63491cef74cfdbbe7179654a011d2 . +_:N095540f9f12247789df5af949bdc1243 . +_:Nb5d2ba36a8d2425ebb9042adf8f84c3a . +_:N18b48308f3f5493bbcee86294e1871cc "EDAM" . +_:Nbfda65f5ee974f4690bcdacf9835a135 . + _:Nd8101bb6e7a1478ca1229f7b56576939 . + "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER." . + "None" . +_:N30b300e7c34342358193c71c787d5330 "UO" . + "https://identifiers.org/unii:$1" . + "None" . +_:N2568221a60fa433ca6f565e121127eb7 "APO" . + . + "false"^^ . +_:N7783f44a6d784105ac75d3f824fe461f . + "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da)." . + "Vocabulary used in the RDF representation of SBML models." . + "ChEMBL compound" . +_:Ncf6027a0d37246fcb2ce39e666aed170 . +_:N8b6f4999335f4680827b8c4a14ffde62 "BTO" . + "^\\w+$" . + "false"^^ . +_:Nb07db8d85c974ccca983365be5752541 . +_:N7e308e66230b4e0ca203efe9ea0697fc . + . +_:N39833ee89bd347a6aeba7353b4dfcd77 . + "false"^^ . + _:Na63317d58f52413cb92ca88d3514ec62 . + "false"^^ . +_:Ncc41209a4b554b458754f8214bd83506 "bao" . +_:Ndff7a38b0e884dc1adbe45a295627e9a . + "evoc@sanbi.ac.za" . +_:N7b85e7388a4944d9aa156b592868faea . +_:N9b9bd50e2bb84b848e0dc75aa546074d "gmd" . + _:N2c4563ff5bbb455a8fdbcedc5e658ab8 . + . + _:N35f4354a663a4f49ada249323642d768 . + _:Na457c72ce7e947c881cdf1011eacd558 . +_:N365041ba8d884a35b69eeafebb66be4b . +_:Nc228b05e90ea491c921b7af964f47358 . + _:N469313bed1b94fd9b27952663e3298b2 . + . +_:Nb46799535cbc4649a14552957eaa5d63 . + "^M\\d+$" . +_:N3a014a7fe19747a0b0d8323ab740ff21 . +_:N5610785790434ae790100304cdca47d0 . +_:N5287f59cb01d445e8ccd30e06bfa7f2f . +_:N30469ae779254e45b28628c629fb2819 "CGSC" . + "^did:[a-z0-9]+:[A-Za-z0-9.\\-:]+$" . +_:Ncea8c147ce8f426da86a9b4f317ae106 . + "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines." . + "None" . +_:N9c8640cecfca4086b43d3859e8141d4d "ricenetdb.compound" . +_:N8fb2c50fdfef475e933e1052b9f417ec "bitterdb.rec" . + "None" . +_:N79efe7393aec45938e428ecb904a004a . + "^r\\d+$" . +_:N13bd727b738d42a1b8cd3935da53532c . + "https://identifiers.org/lipidbank:$1" . + "https://www.ebi.ac.uk/ols/ontologies/co_346/terms?iri=http://purl.obolibrary.org/obo/CO_346_$1" . + . + "None" . +_:N44b07bc1622f421e97f89697a42a7c06 "VO" . +_:N24c2f60c631e45f1af4c4e0fb80ec0f0 . + "None" . +_:Nb106547395024f669890a0eb628ca458 . +_:Nd8b214182fb8404c8d1be69a6c3423f3 "P1554" . + _:N9955b7b5cfe8458f96e70207f051240f . + "Human ancestry ontology for the NHGRI GWAS Catalog" . + "NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties." . + "D053716" . +_:Nadbb221a7b25496f982d048e5d887b4c . +_:N1ca9bd4931d74a6c8163f3f4635725c7 . +_:N50a83ee7f12a4458a85f9fbfc4799be2 . + "https://www.ebi.ac.uk/ols/ontologies/tto/terms?iri=http://purl.obolibrary.org/obo/TTO_$1" . +_:Nb6baaf1a91144a9a8f33e1d79fc939bc "pharmgkb.disease" . + "None" . + "false"^^ . + _:N5f04ec5371984fc2b0eaa5c19d2a4108 . + "None" . +_:N8e6179158be2458b8707e509f7f0ae8e . + _:N59c602ec148447768beb5586d407b2fd . + "0000086" . +_:N5cf624d7699743d6b9e3747a8c1263eb "hso" . + "Metabolomics Workbench Study" . +_:N145c70201436477abc8250897e5ea694 . + "CC-BY-1.0" . + "false"^^ . +_:N451fe22cc507422cb55f0c7ca3fceed3 . + "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information." . +_:N656272c74607400294159953e2bc6bb1 . +_:N8c345a7ea44f41b39eabbe7f6fcd90ec . +_:N6bb922e3c2fe42628987e94acd67249f . +_:Nfba2cc228da441baa4e8c8010dfe152a . + "https://www.ebi.ac.uk/ols/ontologies/zfs/terms?iri=http://purl.obolibrary.org/obo/ZFS_$1" . +_:N4998dced729d45c5bb9e3a35d18da197 . + "false"^^ . + "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)." . +_:Ndd1a62f6d81042d18f27807fdd459eeb . + "^\\d+$" . +_:N5e65a4c30d8642e584d9faa9eb51194d . + "false"^^ . +_:Ndecf0c21ecdf428c8fc131d01cee9897 . + "https://identifiers.org/pina:$1" . + "^\\d+$" . + "Symptom Ontology" . + _:N351b099f70604be187ac8f1609668f2f . + _:N8e5705c270194747a0acd2c2fffc3625 . +_:N1863e15044a54767809e9a5b0b68b266 . + "https://identifiers.org/pid.pathway:$1" . + "Ontology of species-neutral phenotypes observed in pathogen-host interactions." . + "false"^^ . + "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences." . +_:N6e7b913763004999855db336399a53b9 . +_:Ne75997fe12634b189e4d5e710dd6e126 . + "false"^^ . + "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information." . + "EP0311" . +_:N19d01116c0f54598a775b358304a5a85 . +_:Nebfb3834e8de4bcb95d0b1f287b4615f . +_:N306ee873ec584fdca797204e08f48169 "rfam" . +_:N2c18c781c186487dbf39b60594f82274 "tcdb" . +_:N4320457477d64cb8a02d58c552439134 "caps" . + _:N984648f01f624e8592e8f1d14da97e15 . +_:N557095b2021c4d5c97d2b8fafd1371a2 . +_:N448f6a69f7a04eb69992cf61b7c2ecfe . + _:N91e7679b19bc484cbdb486fde626017a . + "false"^^ . + "^R\\d+$" . +_:N8b12d55083bf4eb3a728907f1df3d94c "matrixdb.association" . +_:N119c676e75d442b0a2985e0291a80f9d . +_:Nea8980a82f2a49b5b82c90dbbe2ff881 . + "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype." . + _:Naae20bd7d1de499ba003001c306fb7a2 . +_:N8d65c06c4ba048c5bef45d6ec4ef9a6e . +_:N232f2a2786a54e9b83c5822c7ba7d427 "hogenom" . +_:N91fe0c3a6ab046cb8bb2c0a38e4e1246 . +_:Ne2ea0e7170444c249768bd0ade93cc48 . +_:Ne85f8ee935324c76bb4314960782df7d "FOBI" . +_:Nc335e7ce4c8e45d7ac4edfa85d6b6c27 . + _:N4917180a3d7b45f8993bbbae6bf3dc32 . +_:N1ba7e9b994834ff9abe44f7672ce3e8f "wb" . + _:Nf4e1239787c1428c8f323c8155b911b5 . +_:Nca16cbfd166c4d66b844cb14f4eb2961 "gramene.protein" . + "None" . + _:Nea58fb47abac48b19109284e9097190e . + "Global Proteome Machine Database" . + "None" . + . + "https://www.ebi.ac.uk/ols/ontologies/lbo/terms?iri=http://purl.obolibrary.org/obo/LBO_$1" . +_:N9e347a783c2f4b6bb1a90cf777965fd3 "KISAO" . + "http://www.mirbase.org/" . +_:N98c8e2020b834bc5b07ece4655137ad5 . +_:N9ea1d869db4042758a0d2f4c4c8880f5 . + "^\\d+$" . +_:Nd774da32d2ab4afcbd95088220b47a06 . +_:Ned21d29a8997441aa7cff593e853a6ad . +_:N2d77f58044624c2681e6727015a9c1c5 "genetree" . +_:N90374d2c381b4a40ad3eb3e95eb37fc4 "AOP.RELATIONSHIPS" . +_:N782cbba78b5c45a48c792de0021c06f2 . +_:N57179732e4ab4fa7b09cae451e6903a7 . + "None" . + "https://identifiers.org/subtiwiki:$1" . +_:N1897871aea424a27b560107be7cbd992 . + "None" . +_:N5415db695e3f4628b40a2edd4ba79ba2 . + "http://www.pseudogene.org" . + "LINCS Cell" . + "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information." . + "http://www.vectorbase.org/index.php" . + "https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo" . + _:N13bd727b738d42a1b8cd3935da53532c . +_:Nae7e93864dad48648d14348494e3a0f7 . +_:N5cbd0843365648eca21fb8447aa00087 . + "https://identifiers.org/mw.project:$1" . +_:Nb229e543db43436c811d74c060d70d0c "uo" . +_:Nf8667e22d6184eda8d4d09a197efa5cb "PeroxiBase" . + "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions." . + _:Nc9ae3f87817144339bfa48bd41b34446 . + _:N12ef5f510cd44885b31b5fa46b533fa7 . + _:Nfee5ecda968348549a5cf7ae1e3cbb57 . + "1948" . + "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks." . + "false"^^ . +_:Nd842022fd69a40d28d75224b6c33fc40 . + "https://identifiers.org/cdpd:$1" . + "Affymetrix Probeset" . +_:N750490d050564bc4b597cd8d938c5428 . + "None" . + "'ocid' stands for \"Ontology Concept Identifiers\" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology." . + . + "Virtual Fly Brain" . + "The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field." . +_:N8a7ed0f0313e46e69318ba6e2fb4d460 . +_:N7e4067c94be9475d81fce727a7d67f84 . + . +_:N7333727dd400482f83771d24ac1554a1 "macie" . +_:N43a1f7f841d04d328d2a7b8739f7ed0e "insdc" . + . + . +_:N7820678ded754ff681a11948f9571834 . + "Ontology of Host Pathogen Interactions" . +_:N84684d603c194259a311d8cbe0666f57 "resid" . + "EAWAG Biocatalysis/Biodegradation Database" . + "false"^^ . +_:N90733df28b614c6caf1a0ad861c977b3 . +_:Ne570a2a0479a4a768720980608a1095a "ncro" . + "None" . + "None" . +_:N000df9d421ec44b4827291b1912bbbdd . + "https://www.ebi.ac.uk/ols/ontologies/htn/terms?iri=http://purl.obolibrary.org/obo/HTN_$1" . +_:N17f7ee79c8d948f3b2e54fce61d96dd3 . + "VMH metabolite" . +_:N87c80fbef24f43cabf97693af87ea44d "OVAE" . + _:N5d3e54ee9275493eb281ccf3bb801037 . + "C0026339" . + "Exposure ontology" . +_:N6ffe2f52c07e4208b7d246dc72c77752 "phenolexplorer" . +_:N51ea3473b94b411d955a9f4230391544 . + _:N1057f322324644d6b0168eb7de5317c9 . + "Observational Medical Outcomes Partnership" . +_:Nbebf1b4207d0478b9cbcf4ef27879570 "GR_GENE" . + _:Ne50daf0bbdd3412aba38933ac988046e . +_:N66be02c904b945ec878a06d233a592e5 . + _:N97e90f9466d1469db0bc291713d90510 . + "Conserved Domain Database at NCBI" . + _:Na6d240cd70984c5385127903a354ff4f . + _:Nd010ae96dead4ca09c7c1057583e0d8a . +_:N7a6be50c636d45de8afff291b21a46fd . + _:N2097ef34229945e49001ba9255ceed45 . +_:N5a8d8ed34246438ba7404b8c2a645357 "NASC" . + "false"^^ . + "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites." . + _:N0098f1a2b6d74ac0b5169844f2400082 . +_:N0fa9baafec8a4276865040744a9f7273 . + _:N34eafb1932744c5a8d844b7d9528d346 . + "^(ENSFM|ENSGTV:)\\d+$" . +_:Nbb5ab6d476b64e079bb20e860ef64cbb "BIOSAMPLE" . + "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products." . +_:N4db803738d0e4581a73829b37558ce0a . +_:N8c7b905f620f49cfb51c38bfce50b7eb . + _:N7ff748328add482ab247138c2b766364 . +_:N363562ae495c440695526cc2d8d5d78d "CLO" . + _:N3f9e612076734012911d0a2e45420c96 . + "http://korkinlab.org/dommino" . +_:N61883989ec534272ab702ac093b451bd . + _:Ncc7ed7bcdb184cb0a3362cebf2720121 . + "http://www.wormbase.org/" . + "https://toxpilot.nibiohn.go.jp/" . + "Genitourinary Development Molecular Anatomy Project" . + _:Ne1e6597057f8407c898b742032e4ba1e . +_:Ndff7a38b0e884dc1adbe45a295627e9a "UNISTS" . + _:N7f965a343da544af956187768633dead . +_:Nf2c239f7e4164a2b80e7015feff4d352 "WORMS" . +_:N29678e58a2f34abeaf60fb99e1ab7a1b . + _:Nc43e85de811d4707ad8ce2b251f93063 . + . + "None" . +_:N97409ed999bf45e8a1b00dcb96fc5db3 . + "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally." . + "O08709" . + "None" . +_:N59c602ec148447768beb5586d407b2fd . + "Anatomical Therapeutic Chemical Vetinary" . +_:N22bf6720df6341ed98118af48a0bd464 . + "^\\d{7}$" . + _:Nfb40b6fb213c40fda3dcc568487f9046 . +_:Ne0389e1c40e84f63ac122ca30b5368f6 . + _:N38366f4d886d4f19aff0ca5d4f42a628 . + _:Na01bfee6cf624720bdb44bf11656ed55 . +_:N19a48f9595764b28aed3af11c380e908 "metacyc.reaction" . +_:Nc2588b3f24994de783b1538e86102fee "MFMO" . +_:N1a268176bfde44faab0ae2ee66d61516 . + "DragonDB Protein" . +_:Nf1c4a0b4eb9f4988963e884c49ee12be . + "None" . +_:Na12e30c9b66b4efeaae27eab15426548 "ATCVET" . +_:N79f9c5ca81ec4a09b46152ba3676db08 . + "y-yamagata@nibiohn.go.jp" . +_:N56571cf694194e319a800f477d072562 "cryoem" . + _:Nb12963e0cbdd47609605f78f49a760e5 . +_:N51540ec53ad5463ba6662f8e04111906 "pfam" . + _:N2ddf05d33ac14ca6a59f557f920d7ad2 . +_:Nd5e592c5822f49638166d467ab8e701c . +_:N21f259c90025417d8a71792d10ee8480 . +_:Nbd77f1cf9f4f4fb2b17641592d0004ce . +_:N3d159747ec5540e2beb08dc1ae4f0bf2 "WB.RNAI" . +_:N16784055d4f0408dabfc23308bfddabc "gwascentral.marker" . +_:Nf8adda357b0a4aefa22742975e1ffeb2 "microscope" . + _:N2c7fd03289e540e9a540be779561671c . + "^PA\\d+$" . +_:Nafbcd0ad131248eea109b422c9cf855a . + "false"^^ . +_:Nc78b49656b02413489fb6ab0e2b2817c . + . +_:N90374d2c381b4a40ad3eb3e95eb37fc4 . +_:N8a171690f82e4ac9ba3835d975fe6783 . + "false"^^ . +_:N7d40f3be50de4778a60ba69a5af91763 . +_:N455aac4eb2cb4c0c95ffb5e8051ac4fa . +_:N3bc1c0e5312d4195962f9b22cc395f81 . +_:Nc3d2244d7a2445e2b3d2998cb431de61 . +_:N357661de6fa94352b274ec2f68208c23 . + "None" . +_:N69337b4a0f984edb9b6957fb9366ec1b "kegg.disease" . +_:N82463df2dee4495ea7d0d86a2d3d9467 . +_:Nf2276b7895ce49eaadfe35f0676015f0 . +_:N70338455269d44b1beea469adfefa964 . + "BioCarta Pathway" . +_:N1c427b1f26c6433c9135cc8a90a8c170 . + "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1" . +_:Ncb43ae4b33f142fc95d84834c04c297e "GRIN" . + _:Nbf7d970252ac43428b1aa7bd3086eb92 . +_:N85d987fe12614a5cb0546fb30b21c7be . + . +_:N04082896a0444a749cf084ac9647fd6b . +_:Ncf0268af00524ec183c837eb5ce40638 "P2115" . + "false"^^ . +_:N21b9d586a4b1492db5faea1880a4cbd4 "DRUGBANK.TARGET" . + "h2o" . + "None" . +_:N310a14bb296740e1a0a48f46faf0a2d5 . + _:Nae1f4bdb6050425e8603ab357a27190f . +_:N65892fc71b1349b88a4699c997008745 "REPRODUCE-ME" . +_:Ne771595791214681b333406c27d7441a "opm" . +_:Ne06d395c01a24e829777658a2b7b7534 . +_:Ne93d354b97cd4eb2985480da65284f40 . + "None" . +_:N4ab45f4532e44b788b0b9064f3a1766c . + "false"^^ . +_:N56571cf694194e319a800f477d072562 . + "false"^^ . +_:N313b29bdb32b4b9bbeaeec66cb90157a . +_:N2d031d7d069846748a5178cb8384da9e . + . +_:Nb875ee702fde4066a5774fe232aaaec7 . +_:Nc1ca6602dbaf4671ba585c4789055c0b . +_:Nd7af4c542a2a4a82b18efc93a4bc1d4d . +_:N62a7fe4e510542dba8b2b54c9c374a31 "ncim" . + _:N21c2f3a4260e4237a963eb45ee6b5d35 . +_:N6d01021747ae4c73a5688fda44f4f55e . + "AADB12" . + _:N7e92188114174ec3b8adaf7338e8210b . +_:Nb517abdbc380402fa4b22c97b66e1896 . + "G00054MO" . + _:Na2100f6850e84100b79df6e7d2649fc1 . +_:N38366f4d886d4f19aff0ca5d4f42a628 "eco" . + _:N8267bc3ae53e459a83927f06f6ba180d . + "WikiPathways" . + "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature." . +_:N580e1e3363bc4665818ce7cfba03a460 "LOINC" . +_:N1176479649ed47cfb8a325f45ad0bd6f . +_:Nfb006ad11aa845d29c428d9210e7596d . +_:N254320dde07542bd8f5f44f41fbd180f "MI" . + "GWAS Central Phenotype" . + . + "None" . +_:N1f9ffb9ac6f14ee98795dc00e4945b32 . + "T3 Wheat traits" . + _:Na41599d755ee4310a0091d68a95eb3f7 . + _:N120b4f2ecd5b4368a813a30114548ce3 . +_:N721c8924a87a45f68f45ec8eb6308c05 . + _:Na68349ad9534492dae26bbb7b4093832 . + "^NMR:\\d+$" . + _:N502df234c10442878564a508a3c3f14e . +_:N032351d28c50486da2bfb8f70a102543 "EXO" . +_:N0e36fbde5bf04dbea8fc67a2ab4ed6ed . +_:N5f66ca86535f4746af4232bb1507438e . +_:N4a9e2d1030ba456782bb447f1ebc2698 . +_:N0fd2f9ecf4884319919b5525e8c778c7 "CMO" . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$" . + . +_:N161e5d6596634b5790364bafab05b95f "foodb.compound" . +_:N7e92188114174ec3b8adaf7338e8210b "FUNGIDB" . + _:Nd29c2bdd613b409fb8500e0ac48880e4 . +_:N3d98eb2ea084445b94de07f5894f89d5 "zp" . +_:N1b2445c3055748458f71ee0fd4b2e751 "CLINVAR.RECORD" . +_:N138b7930fe4d4312b987c113045bf374 "mirtarbase" . +_:Ndbbcb701367746659991b1cc2718edfe . + "YAL001C" . + "OSC1416" . + . +_:N0f338ff81db24e72a3707176351ba4ec . +_:N54243b25354245e281eaead2fce313c9 . + _:Nb59b8523035d4e6fb2f1f15ccc2c0953 . + "false"^^ . + "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries." . + . +_:N985266fd7f124cd0bab976bc21947049 "maizegdb.locus" . + _:Nf70925baf06540a1931af8a283077356 . +_:Nc0f8075427e7431589a59cb91de386db . + _:Nca4642b26142463099c57ed83f590e5b . +_:Nfc3ab88a7805431b847c97c4e1937d79 . +_:Ncd9d1702468741f49ba5000caac24d32 "biocatalogue.service" . + "false"^^ . + "0002-1975-61" . + "https://identifiers.org/proteomicsdb.peptide:$1" . +_:Ncf36da17a8df457fb7b67b1004112d67 . + "^PWY\\w{2}\\-\\d{3}$" . +_:Ne93d354b97cd4eb2985480da65284f40 "FAIRsharing.uBpQ1q" . + "https://identifiers.org/doi:$1" . +_:Nf03fb811408b451cab00390f5a375d78 "PRINTS" . + "^\\d+$" . +_:N8ad70a18e3e84627b57a22830d6af161 . +_:N2cc2ea9f6f9648c4ae6a855b5729b902 . +_:Nd9cc97671e994ddf81506a6acace7772 . + . +_:Nbbc63def8fb34bebbd61dd465e56c126 "MO" . + _:Na709d50f045848419bc52dca22c7c979 . +_:Nc1e85fe48d6e4c9696eec3317dbff513 . + "https://identifiers.org/biomodels.vocabulary:$1" . +_:Nfb71b28188a446ab9b80b12fa2c77eac . + . +_:N0a5e802f227e437983e1c621cdf74508 . + _:Nbafeb873124d42a885374595d65569df . + _:N9813954146124bde8e11424bc6ede5e9 . + _:N56b5069379d147e2be398eb40b3ee0e4 . + _:N1c65b69b1d754336afb15ff111461c0e . +_:N7579e4289b0244808c46bdd32eb87eee "GenBank" . +_:Nfec4e4a6ee8546e8be40accd68f26d7e "vto" . + . +_:N1095f176851840d19ae18c45b21225d2 . + "None" . +_:N2bd08cc7f2da4c4f864bcc070fe22855 . +_:Ne6392ca29e614d589871a8d42d735b55 . + "https://www.nescent.org/phenoscape/Main_Page" . + "^\\d+$" . +_:Ne739ba7d49e44a29b5ca52526c37e5f4 "pride.project" . + "TreeFam" . + "^H\\d+$" . +_:Na5b4417819bb4c7b9fe33d2e76ab9ef2 "COMBINE.SPECIFICATIONS" . +_:N5f66ca86535f4746af4232bb1507438e "foodb.compound" . + _:Naefa37cac9cd48e7923e4294a55e978f . + "https://www.ebi.ac.uk/ols/ontologies/mondo/terms?iri=http://purl.obolibrary.org/obo/MONDO_$1" . +_:N35da353cf0504adfbdd15bb1e28a6f02 . +_:N7ba1934fafd540b287979dc4c0c75f67 . + . + "false"^^ . + "None" . +_:Nb73511ea1f704e3d9a362feada7d7bd5 . +_:N6b9fa6fb9c5c4829a3b4c97019b81eb5 . + "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse" . +_:N7db542e649bf453bbf3c46f2abdab402 . +_:N78e3b8a5166344c4b6f8835fb1d3733a . +_:Nbf70cad2cb9542cda5dfdb5d7dd2f819 . + "Pseudomonas Genome Database" . +_:N0169e4999f994aeb8197bdbafec9b206 . + "None" . + _:N46e39a8d4fcb42838e3fb0cc0da28c21 . +_:N4ed56ed51fd54850a5ee138a76be959d . +_:N1293f73624ea40d290b3f3c140dd59da "ENSEMBL" . + "false"^^ . + _:N7ff5e27c39a9477992e64f1edc9ff65a . +_:Nfa701f51200f40dca72e6f6f8d34bd4f "cvdo" . + _:N3dfeb00c9fb5487bae56282fe80478db . +_:N6a5d1624fa2e422da77b11591ca0efaf "p3db.site" . + _:N85e9749827804dc0b936fe8ca12ea7c5 . +_:N6b470e9d06a8430991b36dcdaddca9e3 . +_:Nb59e10b8f4b241de88aead0e16bd50e5 . +_:Na12e30c9b66b4efeaae27eab15426548 . +_:N60874712f4d943c68d9c94db44f9496a . +_:N4edc50277cd94e37b82f32d79958c6cf . +_:Nba92a07344c4470292fff1ddf67fbe8e "glycoepitope" . + _:Nd0d7266945db4001880bd492ef3ac469 . +_:Nc9904fc018b34ade8d541da147791e61 "orcid" . + . +_:N3de32ce7be1f4ad9ba5b693c3ffbc19f . +_:N44637c91b29845e2884b97712eefbd70 . + "false"^^ . +_:N108640097e3a40a7bba9259c10972a7a . + "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$" . + _:Nbbbb026372da489baadb376a52feec1f . + _:N384705bc64894489be660c76173f17a7 . +_:Nbbc2a36133e14118a15f9b6d1c468935 "bgee.gene" . +_:Ndecf0c21ecdf428c8fc131d01cee9897 "PDB" . +_:N4c4498dec7364a00bc9591c7cd70bee7 . +_:Nca385fd5d04745028ece2fcfc64dd279 . + _:N72ba5b8677854d10a4d65dc5de7786e4 . +_:Nc4e49c68f91547e1bd952534a656caa0 . + "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$" . +_:Nac52d80dc2c8469f98fcc2adcbd666f2 . +_:N388173c734e04915b1a46269608ab6ee . + "None" . + . + "^[A-Za-z]+\\/[0-9]+$" . +_:N88cb00905c234988a6fbc1c27a4b70e8 . +_:N21ce3a3785de46b79a1761d78fbbf1ee "CHEMBL.COMPOUND" . + "^\\d+$" . + "Comprehensive hierarchy of extinct and extant vertebrate taxa." . + "None" . + "sio-ontology@googlegroups.com" . +_:Ne293cf9d442145209024c8ef08357646 "chemidplus" . +_:N3dfeb00c9fb5487bae56282fe80478db "caro" . + "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries" . + "None" . + "^\\d+$" . + "https://sitem.herts.ac.uk/aeru/vsdb" . + . + "NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons." . +_:N44359ba95db34caf92717ec8faa66d75 . +_:Nb0227452710445a1a5790688d5189c6c . +_:N5b74197f93f04a03afa0ba71726fa26d . + "None" . +_:N5267a5b556954ba8b4d8c1d54b9eccd5 "compulyeast" . +_:Ndbbf08a0f722427a96424925bbb74fc7 . +_:Nd5d9234491fd4687ac4b7b69c7b20dea . +_:N5a95d797771f46638265f8141b780d04 . + "false"^^ . +_:N141d67e9672b4a968a7dd49e0b4b4368 . +_:N68022e2b731d407e91d3ed7aced722b0 "PSDO" . +_:N172e9923a2064c978fc42ba3b1f3217e . + "E5.11.2.0.0.0.4" . +_:Na3fc6b806a004ba7913e387ffabb4567 . +_:N0a1df3559a394cb8a947f1afcc6bc47b . +_:N0db63491cef74cfdbbe7179654a011d2 . +_:N52820bd00d854df1bb1f1846d1ddef05 . +_:N095540f9f12247789df5af949bdc1243 . +_:Nb5d2ba36a8d2425ebb9042adf8f84c3a . + "A01M1/026" . +_:Ncdb0dc213bec430b9c64fd9aa2189794 . +_:N490899046e6045c5a7b28eb886ea6088 . +_:N7e32e1ed31af4026b082674d7e02f0fe "RS" . +_:N05140ee6e3184478a134ca3148422fcc . +_:N9e39018a1f1b4702b07b3fa6022eedb2 . + "^[a-z_A-Z0-9]+$" . +_:Na41599d755ee4310a0091d68a95eb3f7 . + "None" . +_:N8d4489bbaecf44e89b621da29818f095 . +_:N582d53175ad84e0590996817c1c610ad . + "^\\d{7}$" . + "https://identifiers.org/pmp:$1" . + "None" . +_:N610d5481271d47be9f7fa70bb2fae951 . +_:N3eb85224315d47b1b085d8439c0ff353 . + "^\\d+$" . +_:N15ac447319ba47d79b2d318694ae3b39 . +_:Ncba76dc7bb414affaf0d590dee42022b "neurondb" . +_:Ndefa70fa7426401d829a3dc9eff09e04 . + "^TEDDY_\\d{7}$" . + . +_:N6d01021747ae4c73a5688fda44f4f55e . + "lynn.schriml@gmail.com" . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues." . + "https://github.com/ohmi-ontology/ohmi" . + "Antibiotic Resistance Genes Database" . + "false"^^ . + _:Naf77c6633cb045bd9ffcd900425f2a03 . + . + _:N251f9f99ef554df88d2b662ff04c25bb . + "false"^^ . +_:Na5de20799b3146e69c7f382fff739d13 . +_:N1d4a248ceaa24e83a6d9d3a98c492357 "PIRSF" . + _:Nae1591770e6c483ababa61bd4aeaeebc . +_:Nc39ee2305bc345569e6a155bdb84642c . +_:Nfce3de0116f444de9c234e245fbba73e . + _:N1d524366a9b64a93afddc655c297ebbc . +_:N79efe7393aec45938e428ecb904a004a . + . + "ASRP1423" . + "http://epd.vital-it.ch/" . + "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules." . + _:N7d3d1f9b0d7844128a2bbee95159ea08 . + _:N08b35bbdff654872b45d9176b150b818 . + "cgrove@caltech.edu" . + . + _:Necde56132d744b3cb10aaa44740288a1 . +_:Nb95b9bbf48fc426698235588eae3e4d7 "sgd.pathways" . + _:N9c8640cecfca4086b43d3859e8141d4d . + _:N8382398e586c45068136eb545b6c2b34 . +_:Nb106547395024f669890a0eb628ca458 . +_:N56b5069379d147e2be398eb40b3ee0e4 . +_:Nfb55154509de4a298f707595df603b1d . +_:Nb3e43bdf576a427cbd4f0ae69a61b381 . +_:N729e3df9cee84b5289c1caf94c7b90af . + "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life." . + "https://identifiers.org/rnacentral:$1" . +_:Ned37ed6454594a9881ab631a56a3e010 "PHARMGKB" . +_:N52e1b1b710cc4459af606dd5754fad54 "FMA" . +_:N6544b06e047f494fa6fecbd3c5d3b7cc "minid" . + "None" . + "false"^^ . + . +_:Nc4c3ef5b746b46b5b4086305149dd82c . + _:N759ac3708e3740aaa9ade081a84f3fd7 . +_:N02f0f0c0290f41df94fa06e89978fdac . +_:N0deb1038735b4df795775dd8559b05df "GOLD.GENOME" . + _:N34a8b7976d32494093310fb70462f9fc . +_:Necd37b11f2df40d5b7e5b916ab4616bc . + "https://identifiers.org/metacyc.reaction:$1" . + "GlycoPOST" . + "None" . + _:N524f46b3ec74452ea2b30e93f63a88bd . + "^WBRNAi\\d{8}$" . +_:Nbd48e819d62c4134979955520cd05ef6 . + "false"^^ . +_:Nf8d81658dc014c21a1b91c92785315a7 "NBRC" . +_:Nbb4c8200bc224971a4f929c42046a007 . +_:N5e65a4c30d8642e584d9faa9eb51194d . + "false"^^ . + "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms." . + _:Nf366671c3afb44f2b97cc6d586b308f5 . + _:Ne21c66dca39d445ba56633b5af0dc19a . +_:N155a863599c34521a4450f6660013f70 . + "false"^^ . +_:Na3c6524910eb4d528e5800c6aa808111 "PLANA" . + . +_:N3ea8ad5d36ca484fb25448665c4860ba . + _:Nbb3f13e5992a45e3b9c92fb80457ea11 . +_:N3385bafddf2a45f6a1a9cae4e5f7d022 . +_:N727421d5da524dfeb480c12a7d29e8db "Araport" . +_:N5978367cb310406abea9498cae847d80 "NCRO" . + "EY223054.1" . +_:N8ee046eac27f4351a55c0783337f06c9 . + . + "false"^^ . + . + "Wikipedia" . +_:N7f48290722af4170b0e004e5cc89de32 "iuphar.family" . + "UCSC Genome Browser" . + "https://identifiers.org/jcm:$1" . +_:N24e67c608add4f228321dc5ea10c7b6c . + _:Nc03711e412d147de97b14b81db9a329a . + . +_:N3bab384af9e44982bc9c87bd9fb0826f "OARCS" . +_:N390523c70a214560b15f42cdf612a585 . +_:N51d7311e9d3149d29c390426485d0abe . +_:Ne3abc5638c5346ab861f9862c32c36f0 "EHDA" . + "rlwalls2008@gmail.com" . + _:Nf9a64022b4f7461ba5090d35c202d74f . +_:N44637c91b29845e2884b97712eefbd70 "FLOPO" . + "https://identifiers.org/spp:$1" . +_:Nf82124b2610e41de8f82ad4a602ffdfc . +_:Ne2ea0e7170444c249768bd0ade93cc48 . + "false"^^ . + "0000001" . + "https://sitem.herts.ac.uk/aeru/ppdb/" . + "PF3D7_1328700" . +_:N757ea47d698e440dac861a22312b3447 . + "https://pathbank.org/view/$1" . +_:N365504ed7b3145e99f7cd4d8c7fb6fb3 . +_:Naa68be54df964ea19f1b321542117814 . + "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences." . + "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species." . + "None" . +_:N95a5414b18c049bda20e49e4bc0c3bc3 . + "ABC" . +_:N2d60432c616b4edc9fd039c65b8ae5ef . + "ICEberg element" . + "^\\d+$" . + "NITE Biological Resource Center" . + "^\\d+$" . + "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems." . +_:N5a4550e9664c48a79de9ae513dab2e66 "hp" . +_:N52e792f0e76a401f862a97eaef71a60f . +_:N9ea1d869db4042758a0d2f4c4c8880f5 . +_:Ne288f2e229fa44aba7226f7c4adc7f60 . +_:N41ace234ffe2411c8bf6c087276a0d0b . + "Ontology for General Medical Science" . +_:Nc7ead78f26c54aba974a4648e071de30 . + _:Ne69cf62b7aaf4843b421cb2cecf3b1d2 . + "^[0-9]+$" . +_:N8a966cbd5e6049ef8d827f211f8270a4 . + "^CHEMBL\\d+$" . +_:N2ea63690ee3c4421bbd531c45e80b777 . + _:N3ff9a01e88414db5bea577f38cb28492 . +_:Nc38b7f252bb948d4be23058b5c034ecc . + "false"^^ . + "The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available." . + . + . +_:N552d2e802ff14b3ebf6fbaece4567398 "mmp.ref" . +_:N44c742fb19b5427c8d54290acabc6fa8 . +_:N74c2287c8342434ca6f0e3af183b1f62 . +_:N48f78e6d0955474a9e3220fa58c5b55c . + _:N699799359ef8439c91d6e2970bfc697e . +_:N98b926fed6614cce99ce0b238135fa37 . + _:N38a98efbc10c4e77aec5b7962ef16566 . +_:N37f5fac491e94c42b6adbfdf63b151b8 . + . + "IPR016380" . + "Cell Cycle Ontology" . +_:N49f8f3eb8eb04d1cbba747872e4b8b5f . +_:N5bc38fb1bb924ca6bfb78d889dce42fc . + "None" . + "false"^^ . + "1a05" . + "https://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_$1" . + "Gs0000008" . + _:Nce94d7f108d048989700c3f2c821fe2b . +_:N190da5d0c364409b9e011466fbd8c1cd "beetlebase" . + _:N8a62001aff9544138fa1251f5eba322f . + _:N71081f432436440bb4aa224ad49d19ee . + _:N84ed0582955442d5b1315d403485c567 . + "https://identifiers.org/otl:$1" . +_:N45dfa480632e49f395d9202e60a1650c . + "56" . +_:N7e4067c94be9475d81fce727a7d67f84 . + "http://www.iuphar.org/" . +_:Nb12963e0cbdd47609605f78f49a760e5 . + . +_:Nd6466d84cb6f488483fc7e14a2b4bc38 "ENSEMBL.FUNGI" . +_:Naac3a8c6f0ca4ee9ad40730b54f97080 . +_:N295bb89bcf58416b943fa56488f29472 . + "The International Classification of Diseases for Oncology" . +_:N3a22d220a7054433b355b081c147c60c . +_:N092d178583694cce922c3144c996d811 . +_:Nd682702553014dae959466074a9cf58a . + _:N2f8f2e31e9da4d7b8d572ba44649d98f . +_:N29db90c757fe486ca5f9a41ba9f12cf6 "fbol" . + . + _:Nf8d81658dc014c21a1b91c92785315a7 . +_:N5e89047a7b6d4d7f833c84e90f207d88 . +_:N42305f466f704ebeb1625845e434363a . +_:N4dce410c17c44a389b606ae745fc7f9e . + _:Ne2dac13471f74033bd061f46b2a150cb . +_:Ne0d3aa9422f442c7aea1876b0b69c3dc "insdc" . +_:N91c2a708f3904ce69768159d59816a8a . +_:N0cf56ae80e0646ecb44539c5094ee18e . + _:N73a5bf7f831c4174b4d9783d7722e28a . + _:N88b8610a175f4760832869bca9fc66bf . + "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available." . + _:Nb0c033b3ea604ddcacffb144f565a22c . +_:Ne7c195ddfa6f4bb4bf5b90b721df1f33 "P591" . + "false"^^ . + . +_:N0577be01af344496ac33bfd4f91da99b . +_:Ne29254c63a404a84b5b1ff429fc6999c . + "N1899" . +_:N57997db450d3466ea9fc812bf2e7dff6 "cob" . + "https://identifiers.org/gdc:$1" . + "Molecular Process Ontology" . + "^\\d{7}$" . +_:Naa985f061c35486e87ebf3c88b78deca . +_:N1473bedc00334b659476b3600cf85468 "dandi" . + "None" . + _:N859680eb65df498293fb9c6596e4dc1f . + _:N8d73ac8ae58241ebb2b52bae93a78b80 . + . + "false"^^ . + . +_:N70139ef06c9b4eeb9a948a9857ae5a5b "brenda" . +_:N706e7bd775eb4012a9c697836b0dc83a . + "^\\w+$" . +_:Nd4963553bf81446a9d6b764d1e8afc9b "MAMO" . +_:N3e831678ad264fa69ea324f3254f6f01 . + "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined." . + "false"^^ . + "https://identifiers.org/napp:$1" . + _:N2a46b4ab9e0040e6aa0b68e660536386 . +_:N12873d1fefa14e18aaa04c197c5e25f4 "peptideatlas.dataset" . +_:N38a98efbc10c4e77aec5b7962ef16566 . + "false"^^ . +_:Nd9cc97671e994ddf81506a6acace7772 . + "esegerd3@gmail.com" . +_:N3458b2b01d2642c1b76f1290871fddc0 . +_:N2f8b7113f11e4a51b8eed9314795fc77 "EnsemblBacteria" . + "^[A-Z]+[0-9]+$" . + _:N1f9ffb9ac6f14ee98795dc00e4945b32 . + "false"^^ . + . + "jaiswalp@science.oregonstate.edu" . +_:N8e7659d6ca0d4fd9ab9282f6ca966727 . +_:N0a31812b3fad4f9f9f3c1f5edea9c134 "bold.taxonomy" . + _:Ne26d2cb1a66a4d2d863768774feb7418 . + "https://identifiers.org/kegg.environ:$1" . + _:N3ed8e73d31c04ee8ba0bb30b19e5ee45 . + _:Nd1e222dbee0d490e8d0b435c159bcf9f . +_:N3ebf07ca2b0241c1ba481955a321d1cb . + . + . + "doi" . +_:N2d1348fb25ba4fef86c0633ddf2871ed "mirnest" . +_:Na62bc2340fcf45c8acc79a7d35dbf125 . +_:Nbf7d970252ac43428b1aa7bd3086eb92 "WBls" . + "https://identifiers.org/fungidb:$1" . + "Open Data Commons for Spinal Cord Injury" . + _:Nceeaeaf20be7423baaebdcf76d73153c . + _:N447374c435824c56ba3445799ad69f9a . + . +_:N35b4a0455d894fa3b3a6e0786745f024 . +_:N92a236914b0345899772053976729536 . +_:N4357e212c93e4411aa48176cdbe72595 . + "^[A-Za-z0-9]+$" . +_:N5a3d9157764c4c50860bf960aec94d1c "mgi" . +_:Nf1b9402988de4c75944dfe50a4c4cabb "cath.domain" . + . +_:N43a1f7f841d04d328d2a7b8739f7ed0e . +_:N1d02e22c5de948cba0c0bb2295e6d998 "ird.segment" . + "None" . + _:N763803ed4fb8400aba6eb4e5c11ead9b . +_:Ne0389e1c40e84f63ac122ca30b5368f6 . +_:Ndab967e586d74964b4fd1918fbd470fd . +_:Na935e6378d53423581f76a21e73cfb11 . +_:N665f7872300c48058c17b4f561f1d23e . +_:N8eed0c4198ce4b14a8dd56bcdace5c4e "doid" . +_:Nad122a58924f48b5bf192414cba0d2d9 "hpa" . +_:Nea58fb47abac48b19109284e9097190e . +_:N0b01242669a248988ebb3294b78738cd . +_:N862eeecd326a42878fe01b828d743f1a . +_:N6b606d80567643b6844227f5162841dc . +_:N79f9c5ca81ec4a09b46152ba3676db08 . +_:N0617042c5ce44fb39d8c7ab431b7e5d9 . + "https://identifiers.org/CCO:$1" . + _:N0911246b45e64e239992abce57091627 . +_:Ncaf94c6a021a443fad801167c68d752d . + "None" . + _:Nb59e10b8f4b241de88aead0e16bd50e5 . + "false"^^ . + "None" . + "http://www.geneontology.org/formats/oboInOwl#$1" . + "NASC code" . +_:N5b40088bb4c84b159df3e269fe2bb76b . +_:Nc78b49656b02413489fb6ab0e2b2817c . + . +_:Nb1519e9f33924eb48cbd4d8abd0249a3 . +_:N70133211da1346f5970ab59dde1fd5b3 . + _:Nd3b86306ba8c4e979fedb61beac30fad . +_:Nf1aeb81346384a96958e165996de4faf "EGA.DATASET" . +_:N4917180a3d7b45f8993bbbae6bf3dc32 "UO" . + "^UBERON:\\d+$" . + . +_:Nc2e25b9504024b1c961b5377a81007b2 "glida.ligand" . +_:N188daae7c3da47879d9345874c6381f2 . + _:Nf2ab0ee9a5a54600b37586a0132b6f7e . +_:N9f0f6bf7559c408b832f5b2544f02df1 . + . +_:N5f9e2cddcf1c4dc0afc6b5ea2df42661 . + "https://www.ebi.ac.uk/chembl" . + "1000003" . + _:Nf3b88e2151e3455892fbcb4466cb6130 . + "10001-101" . +_:N4fc37fbeba4e4966bfcc952d2109ff27 "ApiDB_PlasmoDB" . + "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation." . +_:Ndd35373e88bc426a918917a43dd83ccd "obi" . + "None" . +_:N072174f3d5ea4407a8d9b670c3ce3774 . +_:N0e22b53495a6467fbefd92bc16d9945a . +_:N5bb4aa9d0dc64309a43ed7eaa3d7b260 . + "false"^^ . + "UniProt Chain" . + "None" . + "Rat Genome Database strain" . +_:N55574a62bcaf4dc19cdf503f5c4010d4 . +_:N8556a1dc378c4711b9f51efd09ca87d5 . +_:Nb4a2e4f6f8d3479db2ca2b6df00cb379 . + "Structural Classification of Protein" . + . + "false"^^ . +_:N2995bb78b7ca4d1e9bc972b63705840e . + _:Na2a6893f33914e95baecc00eef17a588 . + "https://github.com/obophenotype/fungal-anatomy-ontology/" . +_:N29bcabd8a02d4a7dbf655ffd140b4249 "ICD10" . +_:N4a59ef54031d477d8194d9905374a87c . +_:N50ce5a5b2a754c029b894e69b83db512 "tair.gene" . + "https://identifiers.org/glytoucan:$1" . + "SAMEA2397676" . + "false"^^ . +_:N03f07bb7a04f4961bfef860dc32eb081 . + "http://rdfs.org/ns/void#$1" . +_:N0cb2bb2e5d0e4758a1d33707d39365bc . +_:N1137cffd29aa453ea2c4a95c747317a5 . + "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature." . + _:N83259a18a1184b20ad91f57d5b6e61c7 . +_:Nd7af4c542a2a4a82b18efc93a4bc1d4d . + _:Nca385fd5d04745028ece2fcfc64dd279 . + "Ontology of Precision Medicine and Investigation" . + . + "^[A-Z]+$" . + . +_:N9068c2d7575f452a8f349467fc8a1222 . + _:N2c736a2917194d4a8529d4b59bdac0e8 . +_:N7f9fee758f5d4e23841b7cf61492dfa2 "miriam.resource" . +_:Nd264de8f58274576890249203bb87e26 . + "false"^^ . +_:N46c9efce09144788ade45415316df734 . + "https://www.ebi.ac.uk/ols/ontologies/co_338/terms?iri=http://purl.obolibrary.org/obo/CO_338_$1" . +_:N5a171ec989b9441993c88f6698e031d2 . +_:N8d7b1bcc65e043f789056fc6938c62d0 "pgs" . + "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community." . + "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century." . + "https://www.ndexbio.org" . +_:N846be59b67e24a69a62c4fa020966359 . + "2008-005144-16" . + _:Nd7dd9cc4b6f44b3681feb243ee296e33 . + . + _:N5d3fa466a46d4effa966d51bd865aa9c . + "Chinese Biological Abstracts" . + _:N4697d31a1fa04f13bd8fe8c751fbe8ef . + "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information." . + "Virus Pathogen Resource" . +_:Nf03ad73e72f14eb6a9ab4159846fda85 "oci" . + _:N93db6d1ee4a147b09d556cd89f5e29d2 . + "false"^^ . +_:N580e1e3363bc4665818ce7cfba03a460 . + "^\\w+$" . + . +_:N025e241dae594e7f8279a4e0c45a00c8 . + . + "Cancer Data Standards Registry and Repository" . +_:N52d106caa6ef47b192e1dc1937bdaa6d . + "https://www.ebi.ac.uk/ols/ontologies/hom/terms?iri=http://purl.obolibrary.org/obo/HOM_$1" . + "Dictyostelium discoideum anatomy" . + _:N8100f09f4a4b480eba05701cb43859d6 . +_:Ne11d4ccd13984d038985d6546688aa47 . + "Sequencing Initiative Suomi" . + "002804" . + _:Nadbb221a7b25496f982d048e5d887b4c . +_:N21ee9b55b41e4f0c8c8b698f43af463c . + "Olfactory Receptor Database" . +_:N39828499f6c546bda7f28fee6b319c0b . +_:N5c98a3be823847878ae1630f7297e3d0 . + "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). \r\n\r\nEach page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things." . + _:N104a45c98cf74d7db58886ccf94071a0 . + "The Drug Ontology" . + "http://dictybase.org/" . + "false"^^ . + "Ax1" . + "wasila.dahdul@usd.edu" . +_:N51d7311e9d3149d29c390426485d0abe "CTENO" . + _:N75b355a4453a454a842dd019070145c2 . + "https://identifiers.org/panther.pathway:$1" . + "^\\d{5}$" . + "https://identifiers.org/HP:$1" . +_:N9ad5bab90521489eb2f67ab0f615d5ed "XCO" . +_:N0fd9b1dfdd8646aca531f064733f28ae . + _:Ncba8f9df0033412f84fcc18df8abab97 . +_:N5d476f7d09d744288291067eddd1326a . + _:Nd279613637d440449108ff1f5362ed38 . + "Alzforum Mutations" . + _:N952e982d252c41c7b50011d930838366 . +_:Nfd8b074be9a84f5eae130390bea499ef . + . + "4685" . +_:N42aed24c202843338c49c1001387a427 "rnacentral" . + _:Na6932967b81f42a0ac2abb314ebcea79 . + "MarFun is manually curated database for marine fungi which is a part of the MAR databases." . + "HGNC Gene Group" . +_:Nea724f52f44743de80af90cf8fabed37 "HSO" . + "http://tfclass.bioinf.med.uni-goettingen.de" . + _:Ndaaa12bbdd6c4f4da590d8aa200cfc77 . +_:N5d00e1d30d474c15a2f91e17d2b98523 . +_:N35957830ff214770a7298df7b944cf2e "PharmGKB" . +_:N2c18c781c186487dbf39b60594f82274 . + "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families." . + _:N64963c5171cc4298ba2b3d7c8f674f23 . + "false"^^ . + "None" . + "https://github.com/EnvironmentOntology/environmental-exposure-ontology" . + "LINCS Data" . + . + _:N7c77574c1a274acca091bb916218fe28 . + "jiezheng@pennmedicine.upenn.edu" . +_:Ne73a56f469ad4e368997179def7cfbd8 . +_:N8df5f0e08e894cfc9805fabefaa3faf1 "BOLD" . +_:N7ba1934fafd540b287979dc4c0c75f67 . + "2404" . + _:N26b6bcbd35544a83a91e19078b3f2298 . + "RL3R1_HUMAN" . +_:N77f906046c05437a8f60984a797c29ec . +_:Nd83bc23440ce42da8f8c494c2cae5b15 . +_:N540e031cef544870bfac81d2c660194e "img.taxon" . + "https://identifiers.org/ydpm:$1" . +_:N189bd2fa55f4480ba42afa77a155593b . +_:N2d1348fb25ba4fef86c0633ddf2871ed . +_:N3d98eb2ea084445b94de07f5894f89d5 . + "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature." . + _:N84a01dd6e2984a7e903fd1e2eea80fc3 . + "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$" . +_:Ndd8265a488dd4993a5a32f66b8ee6445 "SABIORK.REACTION" . + . + "Gene Ontology Registry" . +_:N6f3ba733aa9a4f2fb8e817909050b1b9 "dictybase.est" . +_:Nac6acaaa1f084d689529eea3035530f2 . +_:Nac5fc55ead0b4b52a4ba5634116a1adc "REBASE" . +_:N2ef3f44d14014b1f86fdad96aba18a35 . +_:Na7f5c8df559a4cb79c7069d14136c584 . +_:Nbbc5c21da6904ce5b1359776169b3843 "clinvar.submitter" . +_:N6acf7910060a452394b1eb3af515ca70 . +_:N7c2867d684ea49a09daeacd51b28807d . + "https://identifiers.org/doqcs.model:$1" . +_:N12aca4ef679743d19046917d38914910 "TTO" . +_:N1ceb52c768bc457e94ecbf83be96ab4c . + "^\\w+$" . + "AB0" . + _:N18cb1c5e41dd480784b07346d12b5591 . + "https://identifiers.org/rgd.strain:$1" . + _:N388bcdc34fb940bbbb5c64eba3eb2b44 . + "false"^^ . + "ToxoDB" . + "https://identifiers.org/funcbase.mouse:$1" . +_:N8fb3a35a342945c28349902b62adcf4d . +_:N08f66f88624b4aa0a6882f968bf76986 . + "false"^^ . + _:Nee77eba3e0bf468ab18c448e942987b9 . +_:N87eb0b5036c747289a8e5013ed70deae "RNAO" . +_:Nc4e49c68f91547e1bd952534a656caa0 . + "https://github.com/obophenotype/c-elegans-phenotype-ontology" . +_:Naf32b4c6aa954e8897151864369da756 "dbd" . + _:Nd45a6d688de24e94896e0b082f10e365 . + . +_:N6771101abe0244b2a2b972a500ff4849 "GMD.GCMS" . +_:N3a4a9f1c33854a08b831ec65787b47ba . +_:N47b1fab38204459284bed1caf5eb8469 . + "Hazardous Substances Data Bank" . + "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$" . + _:Nca78c565bf754c9db435f2aedb173162 . +_:Nedbbcf0b1389456fbc914f3969c52e4d "OGSF" . +_:N2e57a4f05cd44194b24678991345b487 . + . +_:N5339f4621b7647b19825fd1287161cff . +_:Ne468082d34f940d6884454c6356e0d25 "biolink" . +_:N49c1fd816a3a4899bdc150b8feac23d7 "P638" . + "None" . +_:N490899046e6045c5a7b28eb886ea6088 "chebi" . + "https://www.ebi.ac.uk/ols/ontologies/co_350/terms?iri=http://purl.obolibrary.org/obo/CO_350_$1" . +_:N27a273ff07a043ceb16bd6689b62959d . +_:N09afc57ab0af443fa7b02e4a5c522dd7 "FBbt" . +_:N72d57f6c41a84bba96ff18f35531cc19 . +_:Nbd77f1cf9f4f4fb2b17641592d0004ce "scretf" . + _:Ne151a8911f024f579d3215c11e0cfac0 . +_:N63cc32604acd4d01b2845db259e7b50a . +_:N2b2fb1fb630f4aee94ddb6ca1ce70588 . + _:Na771e336556f4b2fb5eb4630a9424736 . +_:N141d67e9672b4a968a7dd49e0b4b4368 . +_:N141ba1c031d94a52896a95780ae6c7bb "noncodev4.rna" . +_:N6716763b145546d2b50ba627ebee5531 "OBI" . +_:Ndd4113956dc84f54a92f623086151deb . + "https://identifiers.org/glycomedb:$1" . + "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy." . +_:N4d90418d6b7641bc9ca5d0d398602f24 . +_:Ne26d2cb1a66a4d2d863768774feb7418 . +_:Ne226a73011ea4994b717b628edf842ac . +_:N224458f5582543eab7a76728cf8998e7 "co_347" . + "dan5@georgetown.edu" . + "National Center for Biotechnology Information Registry" . + . +_:Nd74728cb9508436a9cbf4cd6a0701c9c . +_:N1fd1111641264ea08a7d88260d4a5b52 "CMO" . +_:N7c77574c1a274acca091bb916218fe28 . + "false"^^ . +_:N54643e830e2a48b9884ef65193ce8c81 "PAXDB.PROTEIN" . +_:N7ec8c3c83a4c4308ba28b74ddccde4b7 . +_:Nfe75c3fac6ba43b7bec49d4655d12a3d . +_:Nfbf0048075cc4d42bfe5a3872abd5bfe . + "false"^^ . + _:Nb88b2c5086d948c8b6f665cca4912329 . +_:N540e031cef544870bfac81d2c660194e . +_:Na41599d755ee4310a0091d68a95eb3f7 . + . +_:N8f52e27e4cd7486c93b2d6b52c3ce47c . + "LSM-6306" . + "AP00378" . +_:N5b5dd646199042e7a915caf5d428990b . + "ProtoNet Cluster" . + "false"^^ . + _:N91e02b43aa18490f8952c1c4892924e2 . + "hilmar.lapp@duke.edu" . + _:N9e347a783c2f4b6bb1a90cf777965fd3 . +_:N5f9e2cddcf1c4dc0afc6b5ea2df42661 "pina" . +_:Nd45a6d688de24e94896e0b082f10e365 "MINID" . +_:N3a7f3921409842fca32fbd8fe2dc9dea "MEROPS.INHIBITOR" . + _:Nefa85aac45324876b60b85e236dbb313 . +_:Nd6cb0bb3c3de40c09d4c0327f8996b60 . +_:Na64ca7c8e1f743feb9047cddc3d178c1 "PIROPLASMA" . +_:N2a46b4ab9e0040e6aa0b68e660536386 . +_:Na387bc23b67247e08cfc36ed477f816a . +_:N1d33f3c858f1409b9c752b81932992ef "noncodev3" . + . + "EAWAG Biocatalysis/Biodegradation Database" . +_:N4230a9e838ea4f1da73859d9b722df1d "lincs.smallmolecule" . + "false"^^ . +_:Ne302b25c29664de382a7a2cb64c99d21 . + "Pathogen-Host Interaction database Ontology used by Ensembl" . + . + "PASS2" . + _:N0de9fa519dfa44a0a0d5b981dffc56cc . +_:N97e90f9466d1469db0bc291713d90510 "mmdb" . + _:Naf14f3ddcfb14c438a1692713bc12dd9 . +_:Nd2d971c8139444d7a1360ff104c8bfe8 . + "^VAR_\\d+$" . +_:Nd7dd9cc4b6f44b3681feb243ee296e33 "MEDLINEPLUS" . +_:Ncea739ad97a44702859931fe08b93cf6 . +_:N236c402bbf3643b1ae7d1b93420ab344 "mod" . + "None" . + _:Nca8f2e70bb5249f3875290e7a5a9737b . + "false"^^ . + "ybradford@zfin.org" . + _:Nbf652f57d49447deb6d80a3ef4977272 . + "feature" . +_:N2ef728d3e97149328e3d5cbf9da2fe65 . + "true"^^ . +_:Nf7ac5d114a4147c6a660fac919844aa6 . +_:Naddb08f01e7b4a1daed40db479bd9c94 "mirex" . + "http://purl.obolibrary.org/obo/miro.obo" . + _:N5d7582520af045bdbabe819b2044b899 . +_:N4d30d62253e64efb97568204ff9aea6f . +_:N07b7b653658b44a7b5cdeeaaf9834677 "dbg2introns" . + "^\\d{5}$" . +_:N6bc6b0eb1c7f4cabb4c682aaf74ab713 . + "^[SCTAGMNU]\\d{2}\\.([AB]\\d{2}|\\d{3})$" . + _:Nfef5796faf964fecb01d5059838f3ff4 . + _:Ne5d04b8e6e5440d6bc6ffcd13249ade7 . +_:N1f61023441d24f1095ae15b5f7ed339c . +_:Ndc814b6c4409407ca1a438cdcef5ed90 . + _:N80848c91c42e43a9a1a26cbe53649ec4 . +_:N005d24db993144cc976862b884b3cffa . +_:Nea2ca62e57654db5808786583f58f3df . + "false"^^ . +_:N71c29ee7a7a1443082ee2478ac524d87 "sabiork.compound" . + "false"^^ . +_:N80848c91c42e43a9a1a26cbe53649ec4 "DICTYBASE.EST" . + _:Nb6ae6432829d43e3ab0ce427bc8e5f9e . + "PicTar" . +_:N5afde3d0ae2c4feea9590b40de78e0cc "oba" . +_:N831fab1deb604b208bc32f85f65d8f87 "EHDAA" . +_:N029a2f9a7a674d42b0245e58f9e8c906 . + "Lentil ontology" . +_:N384705bc64894489be660c76173f17a7 . +_:N72998157bae248c49f7e49b0f92af384 "Greengenes" . + "[a-zA-Z0-9-_]+" . + _:N96714499a7e04c0f8fc8a8ae254dc5f5 . + "M77F7JM" . + "https://identifiers.org/isbn:$1" . + . +_:N87d8cd5b2b16465f92a94236db1ded96 . + "https://identifiers.org/omit:$1" . +_:Naa62aa6818f24bd4af16b91a3de40465 "ensembl.fungi" . + "false"^^ . +_:N202b0c0f99cb4322a0d1c6579dfddbb0 "yetfasco" . +_:Nca412814693e45e693942494a16d9ad8 . +_:N60efb3f21f524b1cb11aba0271de19ca . + "https://identifiers.org/vectorbase:$1" . +_:N23c25f0e7d5c41ce82ac20c6a97c2f57 "olatdv" . + "https://www.w3.org/TR/rdf-schema/" . +_:Na33b1c27f3d944f4ab43d0f4448f0e68 . + _:N5af6e26210c2493eb9d685a4d581fc25 . + "None" . + "An ontology for non-coding RNA, both of biological origin, and engineered." . + "https://www.ebi.ac.uk/ols/ontologies/omo/terms?iri=http://purl.obolibrary.org/obo/OMO_$1" . +_:N24e67c608add4f228321dc5ea10c7b6c . + "https://www.ebi.ac.uk/ols/ontologies/plana/terms?iri=http://purl.obolibrary.org/obo/PLANA_$1" . + "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation." . + "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products." . + _:N973d5f75197f4e62b4151541b0530d78 . +_:N741b002591c84018a4848d5aa4d3d1b4 . +_:N1d2eacc818094384b0c873f04decc7bb "tissuelist" . + . + "Software Heritage" . + "P0DP23" . + _:N36ff76a49e9e4184afdc3a8b64d840b2 . + "None" . + "https://identifiers.org/wikigenes:$1" . +_:N84ed0582955442d5b1315d403485c567 . +_:Nbad3d765e789425690b76f563722a8f7 . + "Vocabulary of Interlinked Datasets" . + "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers." . +_:N39feb38f4a6c492eab4d9a3de038671d . +_:N4ce2f4635fab4a868be9c690a0046706 . +_:Nf12bb0b66bdc4afcb936b1511512ea97 . +_:Nc4c3ef5b746b46b5b4086305149dd82c "SWISSLIPID" . +_:N913f5c8e984145b19300f308253cde1b "HUGE" . + "false"^^ . +_:N95a5414b18c049bda20e49e4bc0c3bc3 . + . +_:N741b002591c84018a4848d5aa4d3d1b4 "chiro" . +_:N0098f1a2b6d74ac0b5169844f2400082 "mmp.ref" . +_:Nc32c996d1afc4b89a6c50d9d4df9e391 . +_:N19477b0983a147109695bf3211e0b195 . +_:Ncadade484e1e4435b403a745c811b71d "VGNC" . + "OriDB Schizosaccharomyces" . + "0000080" . + "An ontology for representing the provenance of scientific claims and the evidence that supports them." . +_:N239e103147e1414ebc05120c3a4e9d17 . +_:Ned37ed6454594a9881ab631a56a3e010 . +_:N13be46b2193c4f5b80a386246e86cac4 "CATTLEQTLDB" . + "vladimir.n.mironov@gmail.com" . +_:N1faa6b5dd0a64f45b491b2ff735e3639 "insdc.sra" . +_:N1e03cc8d249b4d1cbbd88e7229d77faa "uberon" . + _:Ne0389e1c40e84f63ac122ca30b5368f6 . + _:N202b0c0f99cb4322a0d1c6579dfddbb0 . + . +_:N255b9f496e7f49b290ecd346c2149a60 . +_:N6aa6fd3b42bd4dbfb55bf279cc23afb1 "unimod" . + "false"^^ . + _:N076be8bf96da4c6ba8992f999d3d571a . +_:N98b926fed6614cce99ce0b238135fa37 . + "false"^^ . +_:Nd24e10410a464a41b8c051dca91133a9 . + _:N4eec6012491f4414873a36beea6c0cb4 . + _:Nb29d0f49f7384b8b8ed0d8d4df18ded5 . + "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary." . + . + "^[m,M]{2}[0-9]{5}[0-9]*$" . + "LigandBox" . +_:Nf4e1239787c1428c8f323c8155b911b5 . + "None" . + "false"^^ . + "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders." . + "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3" . +_:N0d6d631e7f124914ad91d658948b1a0a . +_:N160cb4698ff044ef9e1a24c740f08a3b . +_:N26109b1a75e34fd0af16297a8a46dcd9 . +_:N4326544dcfe04c94b14b5b5399b843fb . + "^[\\d.]+$" . +_:N3bcba086a98a486892cdf833b4ead5b2 "hgnc.symbol" . + _:N8babf19707bd44ff86ce333c385ce2ed . +_:Ncb1ccf9d4cea4b4ca91dc6b165eabef7 "odc.tbi" . +_:Nef41afd929994c2995c18098fd7a9d16 . + _:Nd105344f5a674f8da40de58746a7a30d . +_:N46206fa4e6f74295bc34fe9cdb6dcb4f . + "https://purl.obolibrary.org/obo/ohd/home" . + "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation." . +_:Ncf0f0826cd464cf38243791caf79f016 . + "None" . +_:Naa53dcd0832549d8a9191e684686f397 . +_:N5ecb22c807ed41208f9581aa375b43ee . +_:N867c315f547149a18b8e3768d1b6b2d5 . + "0001011" . + "^OPB_\\d+$" . +_:N794a3035514a46ffb8b213a1714fbbc2 "XAO" . +_:Nedf66421528943a98205745589ae1671 . +_:N0648155cb06c4694bd24bd8fb7ee8924 . + _:Nf35b27a1d543449180b4aac7e8f8c1be . +_:Na52b277bee7b441e8e70b55d1f12cf58 . + "Database of Sequence Tagged Sites" . + . +_:N3a22d220a7054433b355b081c147c60c . +_:N725967693a2547549370205befcd2dc5 "ecao" . + _:Ne46307d4457d4a6caf0529b102ede6bf . + _:N77afe172bc9f4518b3682b33aca0a139 . +_:N981d5bc0dae74f9d9dd88787dd763fad . +_:N8a93951f8c574da9a55d66f3cc0683df "NCRO" . +_:N7f3fb7ccf01143759739311dc0318cea "P2158" . + "^bt\\d+$" . +_:N1293f73624ea40d290b3f3c140dd59da . +_:N89de7f8c9aa442f5badd1c3a8394493e "TOXOPLASMA" . +_:Nc3f9ae8848ba48b29a645af611cda5eb "AMPHX" . + . + "false"^^ . + "identifierPattern" . + "https://identifiers.org/odc.sci:$1" . + . + "false"^^ . + "The anatomy of the Tick, Families: Ixodidae, Argassidae" . + . +_:Ncf23c5bec81342eb824c467aec0ff76a "cmpo" . + _:N4aaa4fc21d4e41f7a12672842f9ab9e5 . +_:N96a23e2293d14402b3ac7d59eb60cb9d . + . +_:N3e282782fda74058aa0144fbaf911686 . +_:Nc5ca5e38a35246aeac57025ad363afe4 "elm" . +_:Ne6dab24f98cd4f8c817fda4fc9a041f9 . +_:N6c3436fa2da046cab046c30cfd23ccf8 . + "false"^^ . + "https://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_$1" . + "Genome Properties" . + . +_:Naa985f061c35486e87ebf3c88b78deca . +_:Nd5977cfd97d4466b8992aaea1bcd0f1e . +_:N972bcc57b56442b3835a806b8400abea . +_:Nac6acaaa1f084d689529eea3035530f2 "upheno" . +_:Nbad88d6a0d4141638320792d356cdb1f . + _:Na6bbcd7f96e54d48846f8d96eb075b93 . + "^\\d+$" . + "The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access." . +_:N08b35bbdff654872b45d9176b150b818 . +_:Nace1a7e21ee043f29ae929dacd46f4e8 "scop" . + "false"^^ . + "false"^^ . + "000000012281955X" . + "false"^^ . + _:N71dd678147ab4664bbfc578e83ff87ad . +_:N5449cb69b67a4c0ebbc05baa6f8eec8a . +_:N67c70e69948b4b04909cd08115ebd1b3 "psipar" . + "false"^^ . +_:N627860dba0144373830ebaaa57264fce "clinvar.submission" . + "Population and Community Ontology" . + . + "ABL1" . +_:N78520561e09e4916b60c464a80ccaf3c . + _:N8c7b905f620f49cfb51c38bfce50b7eb . +_:N168db5aa638a42f8801c8319f562791c . +_:N937ad05322344107946eaf05b36e3dcb "rnao" . +_:N821eaec3b9b841b399ac2c80c7e332c6 "pirsf" . + _:N8987bad3099543f99f357240884a60d8 . + "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them." . +_:N8c177aff19574296bd14b874e356d31e . +_:Nfe7b12fc66a5488dae523a179a0e0356 . +_:N6bf09f73e34c47e08468794a2f9b1ee4 "UBERON" . + "https://identifiers.org/mimodb:$1" . +_:N2e2552dad58147e6854bdcbe947f8eba "MP" . + _:N31e2876877c84f76b7fe856e84a69b04 . + . + _:N540e031cef544870bfac81d2c660194e . +_:N5f35e9790af04c9bb0da94160b2adebc . + "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API." . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances." . + "Reaxys" . + "https://biocyc.org/gene?id=$1" . +_:Nf5270839eb284d4a917f74f639412949 . + . +_:N135138374f76493b853f3fac24fb9305 . +_:N79a95de0ed34421887cb470bd249760f . +_:N6278c313b2e6425f82ffd6df7fe725cb "RefSeq" . +_:N7a26b0dde44c4a01a35029dbd29c0385 "PDRO" . +_:Nbfda65f5ee974f4690bcdacf9835a135 . +_:N72ba5b8677854d10a4d65dc5de7786e4 "void" . + "The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases." . + "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions." . + "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan." . + _:N4e32f72347d84aad953ed9aad55dd302 . +_:N0b01242669a248988ebb3294b78738cd . + "https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv" . + _:N99d7c4231c4e41bf8e8bc314beb93a21 . + "false"^^ . +_:N0b700b0c63084c0ab59ffa6edfd8a7f4 . + "None" . +_:N0617042c5ce44fb39d8c7ab431b7e5d9 . + "X58356" . + _:Nd2b5996fed224623bd6027e0d5b34902 . +_:Nd30c5f284f714b86836137d5bb85825b . +_:N38a21ba401994eb5b15a986efd37caad . + "1000" . +_:Ndd8b54a8f3e74b969d0185b8bcce0939 "CDD" . +_:Ncaf94c6a021a443fad801167c68d752d . + _:N237fa065f36643309d5f2247a3871a45 . + "http://eawag-bbd.ethz.ch/$1/$1_map.html" . +_:N650b607c0fe64b4699babf3345c87407 "OMA.GRP" . + "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)." . + "None" . + _:N9ab96fa413d640e9b0487d8ec5d51d44 . + "Genetic Testing Registry" . + "https://www.ebi.ac.uk/ols/ontologies/co_356/terms?iri=http://purl.obolibrary.org/obo/CO_356_$1" . + "None" . +_:N29c2adfc8ce743cc87e4e458cd271659 "csd" . +_:Ne771595791214681b333406c27d7441a . + _:Ne7896cf685f14f12b98470f745d371f3 . +_:N559d671aa4c744ba941a45bddf4dc893 "iuphar.receptor" . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/fbdv/terms?iri=http://purl.obolibrary.org/obo/FBDV_$1" . + _:Nf11d63b473404ae2b980cdfa5e1e5720 . + "None" . +_:Nc2c1652fec084e29be6e744e9da81f05 . +_:N0b245887e0d34af79e4f94858fd37e85 . + _:N2c18c781c186487dbf39b60594f82274 . +_:Nc4e49c68f91547e1bd952534a656caa0 "uniprot.isoform" . +_:N5f6c5cdfbf8b4c33bbd719de6de2faf5 . +_:N8d574d0645de448db7992734c2644e9f . + "http://www.cropontology.org/ontology/CO_346/Mungbean" . + "^C\\d+$" . + "jiezheng@pennmedicine.upenn.edu" . + _:Na5341915d15c4c6c9c123117f2c134c8 . +_:N947dc11790d04d2a82a9b44fcf8713e7 "nbrc" . + . +_:N5600aa5c4c5c47df9f89976d248485d4 . + "37" . + _:N9f62a552453a4867ab9c93e4cc5874c1 . + . + "https://www.swisslipids.org/#/entity/$1" . +_:N956d8e022cf9478c9b578a40a063bf81 . + "Zebrafish Experimental Conditions Ontology" . +_:N14b145c4d3ad49c4aa91667ceb7e4367 . +_:Ne189ebbf25db421f9338ed42ad1b2998 "grsdb" . + _:N45817e3b2f2044868838df91b6c86cc9 . + "http://www.violinet.org/ovae/" . + "None" . +_:N1c8f695123cf439ba43f3f3084d00213 "P5458" . +_:N8da54c6e2666448d852bc3cbc2df9f06 . + _:Nc3d2244d7a2445e2b3d2998cb431de61 . +_:N46b6acfcf7ac4cebb631d47f08b48151 . +_:Na65323a476cd4cf9b2d6fdb5942bc4e1 "dailymed" . + "cp390@cam.ac.uk" . + "https://code.google.com/p/ontology-for-genetic-interval/" . + "false"^^ . +_:Nb3aac734702140c0b8119b14c9118910 "lipidmaps" . + "false"^^ . + _:N67314cc7f32543e3bb67b4f2809fdf33 . +_:Nab527ea683a54679a8e53c991deae608 "ORYZABASE.STRAIN" . +_:N32ba8a305ccc45caa246192a7be83bf8 . +_:N34462d06e3b34104a6cced84ac7d424d "P486" . + "The Bioinorganic Motif Database" . +_:N38366f4d886d4f19aff0ca5d4f42a628 . +_:Ncaf07e3dc65146b4aa59dc50d9a9adb8 . +_:Neeeefb73d6a4438188c038d826624fa6 . +_:N267178e4554b4807a2d5b9e085eddb4c . +_:Ncec40608eff04656bbea3a8f343351ca . + . +_:N2a26e73621444961af1cf61b3dde7155 . + "false"^^ . +_:N34689d2bc8cb4e288ed5805497fb68e3 . +_:N2108c32a22e24fdbba8581aa967735ac . + "https://identifiers.org/inchi:$1" . + "None" . +_:N3a78565a506e4374a2030d4864f821e2 . + _:N092d178583694cce922c3144c996d811 . + . + "https://github.com/tucotuco/bco" . +_:N2979938d7b634a3a9e1a59c1f253387b . + _:Naf2474d9e6fd44e3a11f4ef6b3299840 . +_:Nd3784db48e3c4f24a3e2691166d7c7e0 . + _:N5ddd7575c6a241d1aeb83f4e8d9aeb41 . +_:N23c25f0e7d5c41ce82ac20c6a97c2f57 . + "false"^^ . + "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records." . +_:N5be3c89f13174c2fab5ceba9277531ce "CLYH" . +_:N3b522cb46ed346fb90b2ca5fb80dc94e . + "CY077097" . + _:Nddb1eb2cb0ab4db28974ba6698f29215 . +_:N60e63b4b07394b248f0800876ab710a8 . + _:N25c7f052586b48e9b33b99c19deb7590 . +_:N6a72682a5daf4c3e871131e169c6a5df "SWO" . +_:Nd02590a865404912a2f8c213bfeab02e . + "None" . +_:N53847fc234244905948e07a9ffefe165 "GRSDB" . +_:Nf3cec00c84ff44138980aba811d9d9e4 "medlineplus" . + "None" . +_:Nbb1c87d6d6dd4053adc837ab25f64cc7 . +_:Ne50daf0bbdd3412aba38933ac988046e . +_:N2ddf05d33ac14ca6a59f557f920d7ad2 . + _:N8b6f4999335f4680827b8c4a14ffde62 . + . + _:N015b494fa305448c86e2bcb132b5eab7 . + "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data." . + . + _:Na4b3a793e94b42968ca76d3f8e04e0b8 . +_:N74c690ba4a9348db9e21695da63acada . + "https://identifiers.org/oryzabase.strain:$1" . + "None" . +_:Nbb68dd2a52014aa5b048f59da59c1cef . + "false"^^ . +_:N5d00e1d30d474c15a2f91e17d2b98523 . + "^\\w+$" . +_:N2c18c781c186487dbf39b60594f82274 . +_:Ncf0f0826cd464cf38243791caf79f016 "psipar" . + _:N9bd509708aa64f7eb2394f329d45db50 . +_:N3dfeb00c9fb5487bae56282fe80478db . +_:Nd1327da44d344b6eaf5843d649f19e39 "gramene.taxonomy" . +_:N2f2acd88caa94ac2a96633712c57073e "RNAmods" . +_:Na5b3858eb28c4f54b8e93462535b8508 "umbbd.compound" . + "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies." . +_:Nd4fb9dad5ac749869a9e97d671935e6c "co_365" . + "false"^^ . +_:N2aead8e3946f44219a390b88867b390b . +_:Nfbe097d7e74a40da9ca97b4ae656efa1 "panther.node" . +_:Nf5360dbc35964ab4ba51357f7c4075f8 "IMGT_HLA" . + "https://orcid.org/" . + "false"^^ . + _:N04082896a0444a749cf084ac9647fd6b . + . +_:N7298ffbee4af490a8fc6f3c3aab9c2d8 "MI" . + "^[A-Z0-9]+$" . + _:Na10d57773a2749f1a79935ab1e871353 . + "https://www.ebi.ac.uk/ols/ontologies/cteno/terms?iri=http://purl.obolibrary.org/obo/CTENO_$1" . +_:N8819ed19a5f748888ab5297325bdc00d . +_:N3eda0f9c1acb4d59814e8b5b833e0dd0 "eupath" . + _:N590075a9bef648309a3a11d26b03f5ae . +_:Nf2c239f7e4164a2b80e7015feff4d352 . + _:N26889da119294fdb9b088f308afdcb85 . +_:N590075a9bef648309a3a11d26b03f5ae "RICENETDB.GENE" . + "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data." . + _:N5a0941b6a2e045b2a303aa35c0a67e7d . + _:Nc1255560ac2b4bf8843037f1a0e5d18c . +_:Nd842022fd69a40d28d75224b6c33fc40 . + "https://identifiers.org/nextprot:$1" . + "https://identifiers.org/massbank:$1" . + _:Nd7e7898ab84749d09f69778f5513a8dd . +_:N4ba31b4e506c4ec08c83661360f4c44a . +_:Ned9647448d964de2b8c85121ad4f09dd . +_:N5b582358d28642da9c19e580f92b4a0f "PSI-MI" . + . + "^\\d+$" . + "false"^^ . + "NCBI Probe database Public registry of nucleic acid reagents" . +_:N68764d5f499a4ba0bf61d8db5a32a2c2 . +_:N494e99930c234c71ab686d373ce1832d . +_:Nf1aeb81346384a96958e165996de4faf . +_:N04923ac2a58f48ccb25c6ce04da8578c "CUBEDB" . +_:Ne758d9770ac44554a2f95eb05f8d7d76 "lrg" . +_:N84ed0582955442d5b1315d403485c567 "BIOGRID" . +_:N600e889aea3f49ffa9424038f19d0e8f "MPATH" . + "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species." . + . + "Yeast Deletion and the Mitochondrial Proteomics Project" . + "10015919" . +_:N4feb9ec1379b4809ae9f15e68c602d87 . + . +_:Ne50daf0bbdd3412aba38933ac988046e "PhylomeDB" . +_:Nfd1a6e0b22d64f11ab9b4a212ca4b82e . +_:Nbb75a2fe2d694b8286d72e029c0cc5b7 . +_:Nf1c4a0b4eb9f4988963e884c49ee12be "CHEMDB" . + . +_:Nc3d2244d7a2445e2b3d2998cb431de61 "mir" . + _:Ne85b7a95d724464cb4ada98855da93e6 . + "false"^^ . + "false"^^ . + _:N5bb4aa9d0dc64309a43ed7eaa3d7b260 . +_:Ne7c42210ca994460ba3dacc1c36aec92 . +_:N5424c172bafb4d72aac9a37346b360db . + "P683" . +_:Nceb92dc1652349e8983e25009fede9b7 "OMA.PROTEIN" . + "HMDB00001" . +_:Nb72c2707323e41f9b45306fa978d4e02 "hprd" . + "None" . +_:N449bcc3858d1470fb174be7c15f20575 . + "Regulation of Gene Expression" . +_:Nb02c6708ffb14a829fa84ed95f50adad . +_:Nbad3d765e789425690b76f563722a8f7 "rgd.qtl" . +_:N9e39018a1f1b4702b07b3fa6022eedb2 "PathwayCommons" . +_:N5ef18bff72764946b2049af377136444 . + _:N3cb20b32163c46a2910f7c059ca9fa7e . + "HBB" . +_:N840f7144e5c44117b168134a42a3a988 "unigene" . + "0000547" . + "https://identifiers.org/biotools:$1" . + "DP00086r013" . + . + . + "false"^^ . +_:Nd81b77e06dc9412da8f20140504fce52 . + _:Nd5f86ae572d444a0aa5420fb0ce16f38 . +_:N6377a245e98b45ab9ffdec4daec1fb2d . + "false"^^ . +_:N35b4a0455d894fa3b3a6e0786745f024 "plana" . +_:Nb106547395024f669890a0eb628ca458 "ordb" . +_:Ncd823ff23f044bdc9d0f3e0ae3e84260 . + _:Nd6d1a4cfac9a486fbf22867f2c363206 . +_:Nd57d9e94855c48f38878f354bf4ea971 "ncbigene" . +_:N82463df2dee4495ea7d0d86a2d3d9467 "LIPIDBANK" . + . +_:N583840c8e9fe44b589c1bbb9a75037b1 . + _:Nea724f52f44743de80af90cf8fabed37 . +_:N263c9655958d46d99fd91409cc77ec75 . + _:Ne807677e0e1442e9a4550666596f8509 . +_:N3ded3ae324d4494bb16086d6a8be7210 . +_:N9e27caa0b2d4461a834f2bfeedac28f8 . +_:Nc687a70d332e45bd8986a93f1d8208f0 "UMBBD.COMPOUND" . +_:N614394e07cb94771a7a89cafc09eaadf . +_:N157b058f79ee4e41a4d2d9b992a739fc "isni" . + "1" . +_:Ncb4d042baaf5467688e1ecad71985410 "HSSP" . +_:N143a47c3a9d24a4c8ed42cce2b7ec9ea . +_:N859cbe91c08d4f4c81c509eef996d8a3 . + _:N0454325ce9ec44b1a18750de59970986 . +_:N9194679d2a764a5c8855251fa503a0cc . + "false"^^ . +_:Nd92db01af3f74fc6aa4219e50aa47eb5 . + "https://identifiers.org/exac.transcript:$1" . + "Nematode Expression Pattern DataBase" . + "https://www.ebi.ac.uk/ols/ontologies/cob/terms?iri=http://purl.obolibrary.org/obo/COB_$1" . + _:Ndb9a523f2f974dc49dcf172fde857588 . +_:N09dcabf190bc45b98a7c996229f60a49 "seed.compound" . + "false"^^ . + _:N5ba4b2f0a79342fda49f778e0ab9e443 . +_:N48aaa3e52ad04e07b4d3638504fcfb57 "obi" . + "false"^^ . + "lschriml@som.umaryland.edu" . + _:N60874712f4d943c68d9c94db44f9496a . + _:N30c31161f00244049c2d5f7bf2283865 . + "Ctenophore Ontology" . + "BindingDB is the first public database of protein-small molecule affinity data." . + _:N86b2ce9ef34a47469535068c27e73566 . + "PhosphoSite Residue" . +_:N1ebc4df1cc5647698ce84e1dd3d6bc97 . + "Pharmacogenetics and Pharmacogenomics Knowledge Base" . + "^G[0-9]{5}[A-Z]{2}$" . + . + "http://environmentontology.org/" . + _:N6e9c3ea82da6409fac3fbb945aac0769 . + "None" . +_:Ncf095d3632bd41c386679905cdc3f692 "CEPH" . +_:Nf7ac5d114a4147c6a660fac919844aa6 "UPHENO" . +_:N643babdf9eb04f1fb06ae356bf1a9dad "hp" . + "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life." . +_:N1f61023441d24f1095ae15b5f7ed339c . +_:Nb9ae12c56daf4929b8056fed7c64884d "RNAcentral" . + "^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$" . +_:Nb5c540e60db44f41a001bb2305bc3968 "nextprot" . +_:Nfc179558546a4c3ab6557bb365c0cf55 "lei" . +_:N8babf19707bd44ff86ce333c385ce2ed "ncbitaxon" . +_:N3df5ba5ed890426a9e9dff58105a84c5 . + _:N7ddfa9fe4acd45a5898ff12424483c47 . +_:N28209c73cf5d4bbbbae27de9cdbef703 . +_:Nccb97b0bb0b34133a7cb8392563c34a5 . + _:Nb07da192e05349bb9c11c791ce86ca7c . +_:N33fbbbe0f46f4da6a1faaf6899664711 . +_:Ncf98a29ad9094b7d8d5fb1d38da2d299 . + "001" . +_:N1c427b1f26c6433c9135cc8a90a8c170 . + . + . +_:N91c2a708f3904ce69768159d59816a8a "BIOMINDER" . + "https://identifiers.org/dbprobe:$1" . +_:Nb54b2d1d27e14db697226d06798187fd . +_:Nd84ef26ed0ce4dd481cf9d5ca7b1aa4a . +_:Ndf1f12341a534dc8b30f9b49d8b8875f . + "Infectious Disease Ontology" . + "https://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_$1" . + "https://asap.genetics.wisc.edu/asap/ASAP1.htm" . + "Maize Trait Dictionary in template 5 - CIMMYT- September 2016" . +_:N22244989c630447d9fea929e53f9bdc5 "PR" . +_:N5e0288c4a84d4da0a04b5d03d10e6b8f . + "100" . +_:Nca412814693e45e693942494a16d9ad8 . +_:Na24c4e905acc4a7d82d3d2e6815c4f56 . + "https://www.ebi.ac.uk/ols/ontologies/oostt/terms?iri=http://purl.obolibrary.org/obo/OOSTT_$1" . + . +_:N6d73b260f4434df09f73a9c9ce1dfec4 "broad" . + "MNEST029358" . + "None" . + _:N643babdf9eb04f1fb06ae356bf1a9dad . +_:Nc0a6a2cd57bf47ae90b6274eb0b9bdae . + _:Nacc51a743ca24b8087431a64adf2af58 . +_:Nf10ec361fd54475189057d3840b0721b . +_:N587a3a4ef1e14ccdbc48951e248b3650 . + "false"^^ . + "false"^^ . +_:Nb8ed4d6fc4c64439bcb715ec59c5494e "iao" . + "louis@imbb.forth.gr" . + "Google Scholar Researcher ID" . + "Q13485" . +_:Ne49cff54c6fc42f7a2c967cfbc2b4006 . + "0000253" . + "R-BTA-418592" . + _:N003db58e80a2489a84da197acb8ad8ac . + _:Nd0d6b48ee9224b3e9553d02608faa3f5 . + "Oat ontology" . +_:N63b50ff859da4c35bc79ed2cfd16dcbe . + "false"^^ . +_:Nec5d35256b0744948e66a9964c550fe3 . +_:N5b90f6783d394007aeb0511b376f7db2 . +_:Ne26f53d90228476ea5ed8cf83c381f8d "P3DB.SITE" . + "1" . +_:N48239933b788424c86c5e26b30a9d66c . +_:Neaa407c4ccdb4addbfe7516c147b3a79 "GTEX" . + _:N26109b1a75e34fd0af16297a8a46dcd9 . + "MCDS_S_0000000001" . + "false"^^ . + _:N45054942e1bd4430b7eb397bb6c3f7c8 . + _:Nfce3de0116f444de9c234e245fbba73e . +_:Nbbc212293c174933abac640da15960c0 "crisprdb" . + "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001)." . +_:N21b2c759ad4a42009ce4ac52306f1a86 . + _:N6dc88724e5f944e6b3644407aaf9c913 . + "http://edamontology.org" . + "UniProt Variants" . + _:N339fe6cc92524b3e8b1ab691af31c308 . +_:N859cbe91c08d4f4c81c509eef996d8a3 "PHARMGKB.DRUG" . +_:N6d271f483f1c46f4abc79b089de789a8 . +_:N5a6857b4e7eb4cac8810ad2c7bfa3ebe . +_:N8758777af13d4381bbc52f376fe3a4cc . +_:Naedd779b64fd4e298aa3a03b634ff236 . +_:Nd6c0193ccadf4addbe15603e1f4b0eb9 . + "^\\d{7}$" . + . +_:N6d271f483f1c46f4abc79b089de789a8 "ricenetdb.reaction" . +_:Ned5b0a610bda4b0d80132e8f51ca5d0b "bgee.family" . + _:N13d9dbcf3f5745e1b489eb0c3abada20 . + "rsk00410" . +_:Nd279613637d440449108ff1f5362ed38 . +_:Nd936df41703242a5ac3f75b43e12115c "taxrank" . + "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+" . + "None" . +_:Na6d240cd70984c5385127903a354ff4f "Reactome" . +_:N15b2bcfee70344738346916eb0cae76e . + "false"^^ . +_:Nf4bf294da0824f849f6ad26e82e04678 . + "141" . + "0005926" . +_:N7820678ded754ff681a11948f9571834 "niaEST" . + "C. elegans development ontology" . +_:N7171b6fee26943ca941e38c075dfa824 . + _:Ne3483c04792b4e808732e2ec9b63eb0a . +_:N80093443863a4eca874755cb85ef4489 . + "International Fungal Working Group Fungal Barcoding." . + _:Ncaf94c6a021a443fad801167c68d752d . + "Rfam database of RNA families" . + _:N7820932cdcab43ce847935d3dc8bff59 . +_:Nc8d75f149ccd4d1bba9b3f0cbe229fa3 "nomen" . +_:N104a45c98cf74d7db58886ccf94071a0 . + _:N831fab1deb604b208bc32f85f65d8f87 . + "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . +_:Nf2e78d1163a34161a113520cff065308 . + _:Nc57bf558223342329242414f4f47860e . +_:Nef41afd929994c2995c18098fd7a9d16 . +_:N72fa97d11f644205abd395a5d80ba913 "efo" . +_:Nef49ba06e02541adae75ca5dca956a24 "co_336" . + _:Ncd2f541fb2864f1b98fb33326966d3a5 . +_:Nd4f13eba43a9439d8bf5b986cdfa0222 . +_:N47b311b0f4304d4081f38ef3111f4cc9 . + "None" . +_:N63f52e74a8b44e8da4b99cde6742d89c . +_:N000733400877484c9459873af6228f90 . +_:N70eb0749dd6a4cb7b494767f9cf5052e "GAZ" . + _:Nc4b7ce543a604215b26f1c2adec9cf26 . + _:Nbd48e819d62c4134979955520cd05ef6 . +_:Nae717fa3f839400db7a655c60380ca3c . + _:Nf82124b2610e41de8f82ad4a602ffdfc . + "http://www.cropontology.org/ontology/CO_347/Castor%20bean" . + "Pocketome" . + "false"^^ . + "true"^^ . +_:Nf5eef5c7957e412f98300ce9c34320d6 "biocyc" . + "false"^^ . + "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry." . + "http://www.drugbank.ca" . +_:Nc82f8016683345dbbf212386fd1c94ac "spdx" . + _:N108640097e3a40a7bba9259c10972a7a . + "Software Heritage is the universal archive of software source code." . +_:N03f6c58ce9dc4fd1b16763e62738fd9b . + "https://identifiers.org/tcdb:$1" . + _:N542393045dc547798b7494d2c2b1c2d9 . +_:N80bff3e13c5e41288ae890f663fecc53 . +_:N906a9573a32a41928a69567d7bf94f2a "co_343" . + "false"^^ . +_:Ne6f3a9d0ae9e4f2fa353629ce0ec49a1 "toxoplasma" . +_:Ne6dab24f98cd4f8c817fda4fc9a041f9 . +_:N59574c1789384e2783a79fdf274eedd1 . + _:Na9901f06306c44c4bcd541b81bfeeba9 . + _:Nfd99f0fe8eba4fd3b898d95bf4e80bf2 . + "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns." . +_:Nf3407cbb6c7b480cb7de12e3692acafe "ConoServer" . +_:N95036a6d1afc4ed78b85c7c5603cd341 . + "Orientations of Proteins in Membranes Database" . + "http://www.evocontology.org/" . + "ae8c77fe-e6c8-44d5-8265-4a38c637bbef" . + _:N35889a42b15141dd848bbc2317573000 . + . +_:N8a1c552d2fc34483b924ae1f6e9fb79b . +_:N3de32ce7be1f4ad9ba5b693c3ffbc19f . + _:N1dffa901799642f7ad505d4582b3f537 . +_:Nb23100f46ea44622bd8aeab38d3e0db8 . + "None" . + "false"^^ . +_:N487d8b81347940b8a6b4cfdd917cdb52 . + "https://identifiers.org/medgen:$1" . +_:N0de9fa519dfa44a0a0d5b981dffc56cc . +_:N0c6d2fa4df874c1f8ba12536170db208 "ARRAYMAP" . +_:N1faf6d0016ae4fe08602b875e9763b4a . +_:Nab6e191a05414027bf0a70d9ae37b3f9 . + "RO_0002533" . +_:Naab5f9055f654451aa6eac93d0be84df "kegg.module" . + "^[A-Z]{2}\\d+([A-Z])?$" . + _:N77045af58cdf47bb91a5c72303e6fe9d . +_:N806bd5b7f58542eeb8da5dfa64c643fe . +_:Nc0a56045eef2410bbfb1adbff1ba529a "smart" . +_:N7ed2a7767af0445c98afe25e05c38eb5 "drugbank" . + "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects." . + _:N2f19f215732b4b30b8205b996df358fe . +_:Ne61c31f0777c487cb961657663152195 . + _:N532ff7ebb6f6446b880d73a3d9ffa8d6 . +_:Ne9d14b64e442469c9e151b64f2767c20 "BIONUMBERS" . + _:Na621025518924fae95303b47b92bcb23 . +_:N2eff8d0d250a4a0091cf5e0308b2952e . + _:Ncdccb0c4bd9141d2a94015ed34ac0dd0 . +_:N4040e1c6944c40cbb4fd717a0c26c142 "interpro" . +_:N3ed497a648f34322a3a34beb80ab40d3 "EOL" . + "false"^^ . +_:N7b7b52b32ddc4036b3b8d0d6e04cfc0e . + . + "None" . + "4900" . + "false"^^ . + "https://github.com/echinoderm-ontology/ecao_ontology" . +_:Nfc179558546a4c3ab6557bb365c0cf55 . + "false"^^ . + "^\\d+$" . + "GiardiaDB" . + . + "https://identifiers.org/bacdive:$1" . +_:Nc364ae0ec4be43bc9112ae43016e86e3 "SCDO" . + "false"^^ . + "false"^^ . + "ECOLI:CYT-D-UBIOX-CPLX" . + "LiceBase" . + _:N76fe3058ee2e4fb3aeadac541d19b860 . +_:N21be85f7775846c4913812042440c067 "nuclearbd" . +_:N4eefe27c74444613823355be9e2f7879 . +_:N2a4d705f23374ec2bfde74cd426e8090 . +_:N93c1d5ef68e1407e89c361e9cc8a1418 . +_:N45a0727b93e14ca68d98e0daf3a3870d "co_320" . +_:Na9bda41ad9ba45fe95a413a6fac55691 . + "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$" . + "http://repository.topdownproteomics.org/proteoforms/$1" . + "None" . + _:N149bfa58f3574ba79a7b6099973a76d7 . + _:N7ab0d869c6ef41179deeb74760deac4d . +_:N88b5761891ec45b68acfea329c86db6b . + "1018" . + "c" . + _:N67e000bbb58e41d199c0366eefc069d4 . +_:N3ff9a01e88414db5bea577f38cb28492 . + "None" . + . +_:N8a80f4bd8cce4c7e802ef5b81688b9ac "phosphosite.residue" . +_:N6ed7ff8feaca40c8982b393b2be02640 . + _:Nc8d75f149ccd4d1bba9b3f0cbe229fa3 . + "^(cl|tum)\\d+$" . + "https://www.ebi.ac.uk/ols/ontologies/xao/terms?iri=http://purl.obolibrary.org/obo/XAO_$1" . + "NCBI dbSNP" . + "Online Computer Library Center (OCLC) WorldCat" . +_:N22965f4568914cfebac7b43b7c81c104 . + . 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Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker." . +_:N4f88af56a8b642e49e24184b4c4db4b3 . + "The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records." . + "false"^^ . +_:Naa0cdf5feeac415084c567d26f0421bf . +_:N6138a792c33b4fe4805274fd8bdb6740 . +_:N166d2b0707fe4488b011c77ad5c67963 . + "OrthoDB" . + "^A[A-Z]+\\d+$" . + "br/1" . + . + _:Nd81a4dc4e732489f9ffc3d0554cc67de . +_:Nab2880ce604a44538e49d8ecc478966e "PANTHER.PTHCMP" . + "National Drug Code" . + "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. " . + "Amazon Standard Identification Number" . + _:N991ac5f9a9774815823cddf2440ee514 . +_:N32ba8a305ccc45caa246192a7be83bf8 . +_:Ncec40608eff04656bbea3a8f343351ca "MIRNEST" . + _:N84b38c97f16f4cb1a422d8a2b724b769 . +_:N38366f4d886d4f19aff0ca5d4f42a628 . + "Gemina Symptom Ontology Identifier" . +_:Nb3083308370d41298963ea9990c1e5c4 "hpscreg" . +_:Nd9d8d71fe0f445109c512c52ccf34e05 . + "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature." . + _:Nc82bcfa378474e28b59688ef4a3802b6 . + _:N39c12bd8213f4679a51b36052b241bc5 . + "https://identifiers.org/seed:$1" . + "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements." . + "^[A-Za-z0-9+_.%-:]+$" . +_:N55057d84126040e1b5f522e3575ba051 . +_:N436744b48d6e4173bbb56938ef649195 "maizegdb.locus" . +_:N119a4ece4cdc48419a0428ae173bc349 . + _:Nbc3e1ab951f844db9ad59dbb2ea058e2 . + "false"^^ . + . + _:N91c2a708f3904ce69768159d59816a8a . + "None" . + "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins." . + "None" . + _:Nd4248321dbe04d8e96b089137fa11962 . + "^\\w+\\d+$" . +_:N2748778cdf614e80a162fb795826fc47 "myco.marinum" . + "false"^^ . + "^([hm]\\_)?\\w+Pathway$" . + "hsa-let-7a" . + "lectins/172" . +_:N3cddf45781764a06908b6052b771c7cb . +_:Ne1e6597057f8407c898b742032e4ba1e . + "Signaling Pathways Project" . + "None" . +_:N55efb6909c634de3a7947cca14960121 . + "Reference Sequence Collection" . +_:N306ee873ec584fdca797204e08f48169 . +_:Nbf3080bb6ad143e18c5bc214bda48c86 . +_:N599fbc7b08e54f45bf0ba3f5740b3f02 . +_:N53483c13f14d404db4db9cd1f4f22072 "P665" . +_:N127521249ff5476da457f7abb1d531ff . + _:N7fa67ed4257b4cccbae45e610131cb80 . + "citlalli.mejiaalmonte@gmail.com" . + "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy." . + "false"^^ . + "false"^^ . + _:Na4ac88fa6a2446d2b167e8f290da4607 . + _:N8c99efaf30e94f6fa41c3e8a7dd4eca0 . +_:N5182ed9925ab4dd0b19337a5a50e343b "PathWhiz" . +_:N1a04ab50220047f4af0293e609a4d4a7 . + . + . + "977869" . +_:N8e5705c270194747a0acd2c2fffc3625 . +_:N41e12e20b6064f16885a7c27dccbcb1f . +_:Nde2b9f60eb324f2b8328c9fd0d3b10f2 "rbk" . +_:N78d0fb9821b94e8fb4eec2860649cad3 . +_:Nfe8fd28e6a9449699164ed6b984f61c1 . + "A controlled vocabulary of describe phenotypic traits in plants." . +_:N8fb2c50fdfef475e933e1052b9f417ec . +_:N3b8479c6ba30424db45bef3b67bc833f "SIGNOR" . + _:N8510b6616ffc47799cf8972ec149945c . + "false"^^ . +_:N7af4052c552443e6bfa5cb0e621be7f9 . + "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies." . + "Cooperative Patent Classification" . + _:N446d72e7235a4d30bf17343c700aedfc . + "https://identifiers.org/homologene:$1" . +_:N773ec9077dc14b548a21e115df8c1fb1 "LABO" . + "E-cyanobacterium rule" . + "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology." . + "JAX Mice" . + . +_:N4165a4d0dc3a4c21bcc7a612ed1e58c1 . + _:Na5f5bc540423459bbd15e1e59b72b7e9 . +_:N7ce98b40f5fd447ca11b3b8c7dc7fd68 "OOSTT" . + _:Nd58c6b898a6c45d88f19680160c0a00c . + "https://github.com/obophenotype/c-elegans-development-ontology" . + "http://www.psidev.info/groups/controlled-vocabularies" . + _:N44b9966bcaf8432b91ef2bf052542a2d . +_:N7ec6e0348ad640bf8278c48eb44aa651 . + "false"^^ . + _:N513f6a8014654db4b8eeb6cfd848c0c3 . + "BioProject" . +_:N51ebf49827934f618b5e721aee4c13ec . + _:Nbb28e523aa2f44e9bfd9f9d3e772d88d . +_:N5e125f21b43944f6baf8616e1efb41dd . + _:N3a5321d77d334ca7b2947ed66e01f7e6 . + "Bacterial Tyrosine Kinase Database" . + _:N5267a5b556954ba8b4d8c1d54b9eccd5 . +_:N99f02343684149afb417e452de205f21 "chebi" . +_:N1762a242ae1444ed87a44fa3a9f39f2e . + "None" . +_:N9451b951de064ae7958814d4125f9cb9 "panther.pthcmp" . +_:Nd28873daafbb41d190839b38fd44ca62 . + "^DIP(\\:)?\\-\\d{1,}[ENXS]$" . + "^\\d{7}$" . + _:N3bcba086a98a486892cdf833b4ead5b2 . +_:Nbc332be6c7764982b2ad92def6dcf2d8 "depod" . +_:Nd651287881a548e5ad0bb1f3a6901816 . +_:Nec390dd0f7eb40d28bdcd879c4658668 . +_:Nb59b8523035d4e6fb2f1f15ccc2c0953 "bto" . + "false"^^ . +_:N3bab384af9e44982bc9c87bd9fb0826f . +_:N4ba31b4e506c4ec08c83661360f4c44a . + "NCATS Drugs" . + "The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character." . +_:N21554d741939497fa923e6df43ec405a . + "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$" . +_:N267178e4554b4807a2d5b9e085eddb4c "isbn" . +_:N49268ab2df614ebfa4fa473feeef3f0b . + "false"^^ . + _:N570bcf3bd0a343739a2f2d38fd8a24cf . +_:N8ec108ff1a354742a1f86e34e1e27153 "MI" . +_:N55ffc9a9f1b54573a766100fc961437d "WBVocab" . +_:Na2a6893f33914e95baecc00eef17a588 . + _:N8f786b8d2e0b4bf99f4a6923213ef603 . + "100" . + "false"^^ . +_:N8b19bd4efd2b4c459beeea39c1cbec2c . +_:N686519e4e3ee4619b9bfa9f8f1238a4d . + "None" . +_:Nd81bb6e0a0924d93a87113622371b621 . + . + "https://identifiers.org/rapdb.locus:$1" . + "Oryzabase Mutant" . +_:Ndaff5e3409514ca28492409d110bb9a6 . +_:N62f70f197fc14f119a36b5151844fcf0 . + "The Behaviour Change Intervention Ontology" . + "None" . + "https://identifiers.org/aop.relationships:$1" . + "None" . +_:Nbb75a2fe2d694b8286d72e029c0cc5b7 . + "^(cd)?\\d{5}$" . + _:Nc4e889fd9b194ef5b351ca059d853632 . +_:Nea36752324984e5abac9e503c0126c32 . +_:N78d0fb9821b94e8fb4eec2860649cad3 "MOD" . +_:Nb29d0f49f7384b8b8ed0d8d4df18ded5 . +_:N52e792f0e76a401f862a97eaef71a60f "OMIM" . + . +_:Nfc6eac62a3d943da9a877914473240bf . +_:N68f0b6b0f167418ba7e9cca96697dd04 "cgsc" . +_:Nd0d7266945db4001880bd492ef3ac469 . + . +_:N6feb98f14aab4a61b6176740b5e322c6 . +_:N41113060b02f46d0902a2dc817c014f8 . +_:N2a5079da6dbe4bc2a9f19b3302cf91a7 . + "Classification of Transcription Factors in Mammalia" . +_:Ndaaa12bbdd6c4f4da590d8aa200cfc77 "genewiki" . +_:N17a29042c93b4657913cbfb3ea0279dc "ORCID" . + "25782" . +_:Nc2f2cf26ef2d40d0aaf8513cd0d92796 . + _:N4540c25309574c53a92b978c339898e6 . +_:Nbfcd987067e94ab2a8a3d66efe745597 . + "https://identifiers.org/hinv.locus:$1" . +_:Nc98438c4c98941a28563da307811cac7 "pombase" . + _:N3a4a9f1c33854a08b831ec65787b47ba . +_:Nb0971deb12004cd8b78480ddf7fd91b6 "WB-PHENOTYPE" . + "false"^^ . + _:N143a47c3a9d24a4c8ed42cce2b7ec9ea . +_:N83ecea0707b24cf49ac80437590b9d49 . +_:Ne80a8417b03b484ca5e9aa69d0489fad "co_321" . +_:N021698e78a8446c5b0973d9be5dd7375 . + _:N9c9fb0ab41b74e778166b044205c95a2 . + "None" . + . + "Golm Metabolome Database Profile" . + _:N9d65dbc266294fb4b8011ff3f851e586 . +_:N6377a245e98b45ab9ffdec4daec1fb2d . + "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction \u2014 as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models." . + "NOMEN - A nomenclatural ontology for biological names" . + "Yam ontology" . +_:Nb23100f46ea44622bd8aeab38d3e0db8 "CSA" . +_:N0f68572c69e34220b6e8ba166c126bbe . +_:N79fdeb9a9695470597f92046f8a21eee "hssp" . + "C34" . + "https://identifiers.org/nasc:$1" . +_:Nb46799535cbc4649a14552957eaa5d63 "paleodb" . +_:N7adf299467c145459af1bb597e9a75f9 . +_:N08f66f88624b4aa0a6882f968bf76986 "apo" . + _:N6feb98f14aab4a61b6176740b5e322c6 . + "false"^^ . +_:N6c3f13ab838b417aaeed5a5e758df935 "HGNC" . + . + "helpdesk@cropontology-curationtool.org" . +_:N5d163b2df4c648d6b19645489ab8dad9 . + "Microarray experimental conditions" . + "None" . +_:N8ed6bffed4b547a2924abd655fe91ce9 . + _:N451fe22cc507422cb55f0c7ca3fceed3 . +_:N36a0aeb09dd9421098355d105ebe5685 . +_:N627b152d60874fa3830b02402a03b335 . +_:N4c4498dec7364a00bc9591c7cd70bee7 "TGD" . + . +_:N057de2c7e82f4cb8bbdb0b4afae0f631 . +_:Na6b12a3a2e33474b9a0bd73905a7b782 . +_:N2f98a5fb6d244d438e0fb6cc41a3e313 "mirnest" . + _:N92c0d88a7a804053b19ceebbe80a1000 . +_:N0fd636a0ea044d1eaf020c179637d8fa . + . +_:N270fe638aaef44fea93156c3cb6b8818 . + "1484" . +_:Ne3393f00567040acabe21b35f95da854 . + "None" . +_:N799e39d2e36247bc8fc90090dd01adde . +_:Nc6f01b6494294af0b8aeb9e61787bab6 . +_:N6ac2eebe4b21400da1b5973cd7cbd4c4 . + "None" . + . +_:N9922564816cd43a2983729532f81e17f . +_:N2c037deb82184158beab989d8dd0101e "P3201" . + _:N495837cceae144acaef59aa48f0a4ce9 . +_:N42a644e3618943479ccd4f22e014aa78 . + . + _:Naa68be54df964ea19f1b321542117814 . +_:N782b62903ec14d7e9e2c9d8e07580edb "rgd.strain" . + "https://www.ndexbio.org/viewer/networks/$1" . + "N0000001662" . + "https://www.ebi.ac.uk/ols/ontologies/dpo/terms?iri=http://purl.obolibrary.org/obo/DPO_$1" . +_:Ncd534b92355140fd895f6cf2126ef60b . + _:N5c869dd7d037412fb27fea8a6514db92 . + "http://purl.obolibrary.org/obo/gaz.obo" . + _:N0cf601d17637477b8fa8b54949a008e9 . + "false"^^ . + "http://www.unimod.org/" . + _:Nd6d1d9333a3044f89652e53000ec71b2 . + "https://www.yeastgenome.org/observable/APO:$1" . +_:Nd4aa2c0272d04b3a8672c37830698ad0 . + . +_:Ne9d14b64e442469c9e151b64f2767c20 . + "https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo" . +_:N66fd7a4f63a347a19e93038411bd6527 . + _:N354332e3a9bb4493943aacd477f07956 . + _:N0440b39504d4428a91836eebaae6bd7a . + "true"^^ . + . +_:N4caf14be1a5a4ae1ba2349d19437d12b . + "https://identifiers.org/sider.drug:$1" . +_:Naf2474d9e6fd44e3a11f4ef6b3299840 "PLANA" . +_:N88b207513d2b44629ef4f83563f92478 . + _:N1a4ce384ba984484b674c3e5222cf2eb . + "DB14938" . + "https://identifiers.org/dragondb.locus:$1" . +_:N5591cc074ff34bacb64e5405ad176dcf "CDD" . +_:Ncf095d3632bd41c386679905cdc3f692 . + "Jackson Laboratories Strain" . +_:N71ac685141744792b168de63c2609c13 "TTD.TARGET" . +_:N6e02c3b2f7f9423bbd0f453754a89970 . +_:Nc9f8b6f4f3e642f99b6bbf7ae97f4eb7 . +_:Neded352f67324ec98daed98c0f272741 "conoserver" . + . + "0000504" . + _:N891a4928c2714e2d9f5dcf0e8c2e9128 . + "false"^^ . + . +_:Nb8de8d3388464cc383449485e8cf0a79 . + "^\\d+$" . +_:Nfcc7f2094e974d4683567c1d2c3c3da9 . +_:Nf979ac9717804c4d9e8fdaefc4548c57 "kegg.reaction" . + "preets79@gmail.com" . +_:Ne45351f7025c43afad1c92133ddcd5fb . + _:Nb3e99a7a716f4de6909cb89333a376fb . + _:N52faa86f145344ef8440b6e63f6993aa . + "false"^^ . + . +_:Ne9b96a1c5f7941eb8638bc5e264ca6b2 . + "false"^^ . + _:N380156fbd7f1486fa12c9dd8bf92a69e . +_:Nd2f43dfbafaa407eaba1351a0e0a5941 . + _:N436edd5aa6fd42c7bc21583cb3cdb2f6 . + _:Ncc49ec63cb0e4549b02b11fe56c7ac3b . + "None" . +_:N1a5cf1dcd13140968275dd88dc6bc1aa "clao" . + . + _:Nf2e78d1163a34161a113520cff065308 . +_:N515efdf0640b4129acb462fc38ddbeef "chemdb" . + "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$" . + _:N9e72d2843b104ba1b9cb86244f48f898 . +_:N4796522668eb4124aedaa60b2086b711 . + "false"^^ . + "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$" . +_:Na2100f6850e84100b79df6e7d2649fc1 "uniprot" . + "false"^^ . + "druzinsk@uic.edu" . +_:Ne49cff54c6fc42f7a2c967cfbc2b4006 . +_:N1d5138d4d40d4ada821c956b353c5c14 . + "Protein Data Bank" . +_:Na64ca7c8e1f743feb9047cddc3d178c1 . +_:N686519e4e3ee4619b9bfa9f8f1238a4d "fbbt" . + _:Nbdd2014d1c8a47a8aa7cd4921d40f5ca . +_:N267693befd9147f2a4f5511a43432f62 . + "^LOC\\_Os\\d{1,2}g\\d{5}$" . + _:N7e087a58d1a8477bad9d7b86fa538da0 . + _:Ndefa70fa7426401d829a3dc9eff09e04 . + . +_:N48239933b788424c86c5e26b30a9d66c . + "https://www.ncbi.nlm.nih.gov/cdd" . +_:N1d524366a9b64a93afddc655c297ebbc . + "false"^^ . + "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . + "None" . + "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles." . +_:N4a59ef54031d477d8194d9905374a87c "TRANS" . +_:N3a65681a124c419ba1724c760b113980 . + "Phenotype And Trait Ontology" . + "6472" . + _:N3ef3f9d357cf44bfaa55a428e12f1157 . +_:N14c08727ee9f4d11bae8c77e6225b180 "gold.meta" . + "None" . + "http://www.imdrf.org/" . + _:Na8f622f95a6641c897f06ca3207119e6 . + "^[A-Za-z_0-9]+$" . + "https://identifiers.org/dragondb.allele:$1" . +_:N44b13f16f5aa4dc783e1d4cbaa77e165 "vario" . +_:N0989c91828f04dbfbb8099d8e0627e7b . + "50885" . +_:N0098f1a2b6d74ac0b5169844f2400082 . + . + _:Nae7e93864dad48648d14348494e3a0f7 . +_:N3d8196bb244642f89f49cdd7f93fb992 "co_335" . + "false"^^ . + . + . +_:Nd6457a3350794b458ce4c557f066df19 . + "S000002493" . + "LCL-2085" . +_:Nf3e149c5a6134f06868d895140049f59 . + _:N4d30d62253e64efb97568204ff9aea6f . + "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling." . + "https://identifiers.org/string:$1" . +_:N333b3190fc2041a7a2e0d89532782d09 . + "Network Data Exchange" . + _:Ncf0be15fea3145ebba3e27b7b864b15a . + _:N2cb98ddb0b2649b1a8f7b2036dbe883d . + "https://identifiers.org/antweb:$1" . + "^[EL]D[SG]-\\d+$" . +_:Na1161b67b4e84cfc8d2eccb24120ad64 "GNO" . + _:N8024341cdc1f4df485803716766f6083 . + "g.gkoutos@bham.ac.uk" . +_:N4ffc227255404fe7b1c3c17aee58c7dc . +_:Na191d51c9e7e46b6855bf61cc9749bc8 . +_:Na0eb689746654836a952d90a24f46732 . +_:N07a2c9ded8a9468183f520a5134f3675 "aop.events" . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$" . + _:N7626eea458c442239dc7df618ca5c645 . +_:Nf03ae32997fe4ad7b673f64a284fe273 . + _:N06c772676df14768963317c03d1038c0 . +_:N6d2ef8f9fa534234801ed36dee17148f . +_:Nff62c96685914ecd9d0794d843135f99 . +_:Ndde5d0d8789d483aba5fcb0961d3e444 "ECOLIWIKI" . + "https://identifiers.org/neurovault.image:$1" . +_:Na07de80a99aa447eb45fe60ce3ac2625 "GRAMENE.PROTEIN" . +_:Nb6b8a5bc05a6476ba063e466d695af2d . +_:N66df0b60dcc249c4b430a47db0d2948e "ZFA" . +_:N000733400877484c9459873af6228f90 . + . + "p.buttigieg@gmail.com" . +_:Ndcce57d2d272434a97ac4f17160965bd . + "hoganwr@gmail.com" . + _:Ncd18f693071b40d2a3f73fd9a4823ed9 . + "https://www.w3.org/2003/01/geo/wgs84_pos" . +_:N8c31c174ed9f414098e1b7efcb82d281 . + _:Nfd1b6c4a1059450cafb066a57c836b09 . +_:N5ddd7575c6a241d1aeb83f4e8d9aeb41 . +_:N3eb85224315d47b1b085d8439c0ff353 "snp2tfbs" . +_:Nf2309524fc7c4afdb13aa6b32268839d . + "Gmelins Handbuch der anorganischen Chemie" . + "^TC\\d+$" . + "None" . + "ppr103739" . +_:Nd4efcb86e90e42768ba341a72dad3289 . + _:N9a8e93e0882d483dbf160e630410e766 . + "https://identifiers.org/cdd:$1" . + "NP_012345" . + _:N622a7778f7b14162accd9c403fdb5f91 . +_:Naf7963ae0084401283c4e462a9ae6a35 . +_:Nb5dd2ef4da8b44bc970c339408366c7b "ctd.gene" . + . + "false"^^ . +_:N95036a6d1afc4ed78b85c7c5603cd341 . +_:Nc4e889fd9b194ef5b351ca059d853632 "dragondb.allele" . + "^\\d{7}$" . + "false"^^ . +_:N7c2867d684ea49a09daeacd51b28807d . + _:N667ccf0d4f1c4d2a87ea3cba1db6032c . +_:N7a7c46fe5fbd4092bdf2af3429d887ea "BCI-O" . + "https://github.com/allysonlister/swo" . +_:N7d979815dbf5468b91dbc5706ea92128 "cellosaurus" . +_:N152c31a785de4d839239b878070dc168 "mop" . + _:N863ee136207f491bb0e5e7dd54e09fac . + _:Nc939984fbdd348359bc06b241f94a697 . +_:N4bd885249e3244d5a1d8671d9440332d . + "The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.\n" . + "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide)." . +_:N5a171ec989b9441993c88f6698e031d2 "ideal" . + "Gene Ontology" . +_:Nc848288e34894435818273852c507d0d "mmrrc" . +_:Nc0f64d6f9c1c4beab251b8a0f7345f45 "HSAPDV" . + "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . + _:N42aed24c202843338c49c1001387a427 . + "false"^^ . +_:Ne380742faa724d79ab781e2bedb22417 . + "434" . + "false"^^ . + . +_:Neaf560210b5040838a0c1de8526b4341 "exac.variant" . + "false"^^ . +_:Ndc4d598cd6da419c8cb5471a1de4cd6a . +_:N42aed24c202843338c49c1001387a427 . + "WikiPathways is a resource providing an open and public collection of pathway maps created and curated by the community in a Wiki like style.\r\nAll content is under the Creative Commons Attribution 3.0 Unported license." . + _:N04923ac2a58f48ccb25c6ce04da8578c . + "BRAF" . + "^[0-9\\-_]+$" . + "https://www.ebi.ac.uk/ols/ontologies/ecto/terms?iri=http://purl.obolibrary.org/obo/ECTO_$1" . + "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products." . +_:N63a72a294af4458397dba597e2895721 . + "None" . + "false"^^ . +_:N32cf077ceb9f4247b8ab2ae0841409db "inchi" . +_:N8b0ced31dab145ffbe728d4bbeb46f75 "AFO" . + "false"^^ . + "false"^^ . + _:N03d4c5f75314466f914e575bac5a0764 . + "false"^^ . +_:N6d2a02f923b247fa85f6bcfb0fcec18f . + "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information." . + "false"^^ . +_:N501096689a83414a814a55e4c7ef2898 . +_:N77620e69420a4f41849a55fb9d1b28f4 . + "https://identifiers.org/cazy:$1" . + "false"^^ . + "GOLD genome" . + "https://identifiers.org/MGE:$1" . + "0000047" . +_:Nd329b7b32ac045eb8cdf745130936e1b . +_:N4eefe27c74444613823355be9e2f7879 . + _:N95fb0953b0f34245b14692ca00dcc6f5 . + _:N25b95c19c3574f67bd0f186bcc133784 . +_:N0cb2bb2e5d0e4758a1d33707d39365bc "RGD" . + "false"^^ . + "Sweet Potato ontology" . + _:N5d00e1d30d474c15a2f91e17d2b98523 . + "Rosa2" . +_:N5afde3d0ae2c4feea9590b40de78e0cc . +_:N93c1d5ef68e1407e89c361e9cc8a1418 . +_:Nb5d2ba36a8d2425ebb9042adf8f84c3a "greengenes" . +_:Nb708e6eead714542b300b23f13dbe34e . + "^\\d{7}$" . + "https://identifiers.org/mobidb:$1" . +_:N13c2a7e397cd4f1cb0943fe22845ac75 . +_:N1894dc0ed22e4b8794222b29a3ec45b1 "PFAM" . + "J0705A10" . + "data_1664" . +_:N8deb04dd936d4b9fb3b41171a23325a8 . + "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea." . + _:N5613984adcb348139db2d0f9061ba0e3 . +_:N94ddb01e2d554a3fa0649ac403071a08 . + _:N8ad4af909dde4fd38b42e59b8e44f009 . +_:N952e982d252c41c7b50011d930838366 . + _:Nef89ae405eea49f0ad776cb9097f5775 . +_:N0146e927f987485bb576161c02fc7b8e "genpept" . + _:Nffde36c529054a96914c98c93db8f016 . +_:Na3b75452a5ac49758dec821b312527dc . +_:N5e560ed1223f42d5903d1c2a91dc3c29 "RNAcentral" . +_:N4014a7f386ce458ba2b30fce8df690b1 . +_:N86ffa9bc2a534fc3b924881b63981fc9 "EFO" . +_:N43769bc2f45a434a9b6e46e0b21ba5c8 . + _:Nf66632b779704032b01cbc263a231b98 . + "false"^^ . + "2" . +_:Nfd72bc7032174dca8d111cf42d4417fd . +_:N48a2099964e74bbaaf167dfb18fa9f59 . + "https://mips.helmholtz-muenchen.de/corum/" . +_:Nf570f0b6bf3343d5b4587f9e6d7bb7e1 "ICD9" . +_:N2f6cfb400f6e4844a8ee071c612fbe29 "refseq" . +_:N88b4aa90c60a46159a83cdb0b070ee23 "P2063" . +_:N1f768234d8a04057a7c0dbe7f5226a21 "mesh" . + _:Ne4c0c7a02be24cb0b3625787c3e75965 . + "https://identifiers.org/pdb:$1" . +_:Nfd1b6c4a1059450cafb066a57c836b09 . +_:N48e434b8d5834e888630659413fd230d . + _:Nf451151cdc36483089764eb84e81792a . + . + "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." . + "HIX0004394" . + "^PGS[0-9]{6}$" . +_:Ned26b5c664664ed9a4bdc0bc7298c4ec "AGRICOLA_ID" . +_:Nb790f514b99741ddb291d7b7aa217d50 "PLANP" . + _:N42267f8133d04a73bdc60b855971ba27 . +_:N6b9c3740830840d0bc651c798a82ddf4 . +_:Nc07514333578449a9c4aff4e8de23160 . + "Bacterial Diversity Metadatabase" . + "DataCollection" . +_:N19c0df0681754690bee2276edea3e4bd . +_:Nf7f1b7e8a914408687303a804b8c745f . +_:N06a00c8ad2e540068b53550e71b9e475 . +_:N0cf601d17637477b8fa8b54949a008e9 . +_:N2207cb9825ca4857a99377e9320bd4ca . + "https://identifiers.org/inchikey:$1" . +_:N647202dfb0164e4fb092136b1a1e144e . + "BN000065" . +_:N7b85e7388a4944d9aa156b592868faea "PR" . +_:N166d2b0707fe4488b011c77ad5c67963 . +_:N6bbb4c8c9547422d96376b33bbd7386a "hogenom" . +_:N2f8286531df84ed18f5b465900286a55 . +_:N26bfafb341f044e1ae3b88a832f4f3e5 "clinicaltrials" . + _:N82463df2dee4495ea7d0d86a2d3d9467 . +_:N5a8d8ed34246438ba7404b8c2a645357 . + _:N73b31b692997431387a08f0938dde443 . + "^\\d{7}$" . + _:N69bca63a9d494699be602b578d1045ad . +_:N6dbdb66ec8714ea5a23bb2eda18533a5 . + "None" . + _:N36a0aeb09dd9421098355d105ebe5685 . +_:N41b49b2fdd6d4716a5a81a9ed4cf9b71 . +_:Nf12d9baf719a43758ae1069043a328f9 . + . + "OncoTree" . + "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum" . + "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project." . + _:Nbad3d765e789425690b76f563722a8f7 . +_:Nc15d9bfb7f7e4d76bae20e42a424f22b "IMGT_LIGM" . +_:Ncf9071a20e0e41a3af87946672920bf6 . +_:N55057d84126040e1b5f522e3575ba051 . +_:N3c4c438bbe504c8b999f6da1ba03a3fe . +_:N7268d2e7f64842e18f786249ff12a21f . + _:N6aa48a8c17e149d3b7959f3593111219 . + "CONSO00010" . + "^\\d+$" . + _:N800e5de3b3554437a7c28aac7a4d1da0 . + "None" . + _:Naee96f3dd90d42a982e3035c7b734e3f . + _:N05c7cefb36324d4c8a303c3c722aef09 . + "67" . +_:N151d67a34f9341d59cf4089fbf621a1c "GENEFARM" . +_:Nfdcf2f6a6be5499d83c9e52b88254120 "RO" . + _:N6d01021747ae4c73a5688fda44f4f55e . + _:N0d2228ebde684837802eded67aca3402 . + _:N313b29bdb32b4b9bbeaeec66cb90157a . +_:N2fe7892b80284a459a86c3474873c3ff "MIAPA" . + "https://identifiers.org/dbest:$1" . + "https://identifiers.org/kaggle:$1" . +_:Nad15d1beb13a46f18bac2ce7bb58876c "omit" . + "^\\d{7}$" . +_:Nf3f9abea057f4bef8a298e93998a5da1 . +_:N86d4b6804f924bd596c81793faf61026 . + "OMA Protein" . + "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$" . +_:N1ebdf534165545cb91f54beee93ed9f5 . +_:N707812ac3439442fa52c56ce09fb5ca1 . + "https://www.ebi.ac.uk/ols/ontologies/maxo/terms?iri=http://purl.obolibrary.org/obo/MAXO_$1" . + _:N88ff848776274409b15d1a5b496d2b0c . +_:Nf35d168f193c4a37b75abfb5f7d767d0 . + "None" . +_:Nc384f38a27f24d7eb13afaa8f27448f0 . + "false"^^ . + "None" . + "false"^^ . + "false"^^ . +_:N86a33aab224f4bfc8428c1107a64bdb7 . + _:N949b4e181ef74b0483747738b2a8eb96 . + "None" . + . +_:Nfe0e662e1c00431eae76bbdea7b0ea43 . + "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species." . + "Potato ontology" . +_:Nc364ae0ec4be43bc9112ae43016e86e3 . +_:N2748778cdf614e80a162fb795826fc47 . +_:N4fe206b6aa764807abed9ee164ef62b6 "MmusDv" . +_:Ne2b38b301c4e45bbb0914d6ef27da749 . +_:N759ac3708e3740aaa9ade081a84f3fd7 . +_:Nc03711e412d147de97b14b81db9a329a "DCM" . +_:N6e987edf9ffd4d508330b3a050c80f70 . + . + _:Nd88c3b84c9224379935c31f37d823b7d . + "None" . + "H00076" . +_:N3afdacbcad414f0ba516d1957b9bda68 "FAIRsharing.9kahy4" . + "https://github.com/EBISPOT/clyh_ontology" . + "false"^^ . +_:N66f493e467bf4c589bf70c3a132be9ca . +_:N6c61209c38364e2fb20ec3ad7ba9a8ba "qtldb" . +_:Nb57dca6e55fd4c9ab697c757887499a8 "GENPROP" . +_:N48aaa3e52ad04e07b4d3638504fcfb57 . +_:Nbdbe321b30fd4b7b9a3b6bb44ab3bdbd . + "false"^^ . + . +_:Nf59e996ac87b4a0884a409916cdf3820 . + _:N1fce305b786547bba5548a009597a653 . + _:N701a88fb0cb54790bec1d15af99a2384 . + . + "frim1" . + "MSV000082131" . +_:N141d67e9672b4a968a7dd49e0b4b4368 "biosample" . +_:N9dfb4b5be783465b863a3338f2c756b8 . + "None" . +_:N7508b7994b404b079ea74ec87238dc42 . + _:N5e0288c4a84d4da0a04b5d03d10e6b8f . +_:Na56dc6b8a2f34a63949274a8a04f8bfd . +_:Nbb41dd1e7ced4e03931f835a129041d4 . + "false"^^ . + "helpdesk@cropontology-curationtool.org" . + "Microbial Conditions Ontology is an ontology..." . + "None" . +_:N1c843245544c40d2893f436ce8d1e763 "rbo" . + "https://identifiers.org/biostudies:$1" . + "None" . + _:N84cd67bde87a436291184ca53db79a64 . + _:N02d95146905e47148382c08b8b519a65 . + . +_:Nc3f9ae8848ba48b29a645af611cda5eb . +_:Ne5d04b8e6e5440d6bc6ffcd13249ade7 . + "https://identifiers.org/gtex:$1" . + . + "The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data." . +_:Na2a6893f33914e95baecc00eef17a588 . + _:N4049d50a136c4f3198f6f2f5eef93b3a . +_:N09a5bf4ae4fe4bdb8d031f0d712640af . + "^[\\w\\-:,]{3,64}$" . + "Pigeonpea ontology" . +_:Ne1e6597057f8407c898b742032e4ba1e "MEROPS.FAMILY" . +_:Nf345db3c3e454f47a550002c0cc7af15 . + "https://identifiers.org/broad:$1" . + "None" . + "false"^^ . + "https://www.araport.org/" . + "https://www.ebi.ac.uk/biomodels/" . +_:N0b3788d004e74875be5786469829ba7b . +_:N24547db28e3e453e840cfe84166fb3e6 . + "rlwalls2008@gmail.com" . + "false"^^ . +_:N42d33c75a2a142b88983e5d7af7c548f . + "Antimicrobial Peptide Database" . +_:Nfaad8a6c407c434f9df70f510b3f2435 . +_:N8c193499523840e895defc956b3bf4a2 . +_:N41ad9a268bd1433081c334540ee0fa78 . + "false"^^ . +_:Nf79f194efe014147b71f608bce06f7fe . + "None" . + _:N3eff830c91044e7091b8176d8669c35f . +_:Nae0448afed2d494580e0ada3a10d8440 . +_:Nd458b6010f6b4a1799c200028d6c12ce . + . + "COVID-19 Ontology" . + _:Ne6dab24f98cd4f8c817fda4fc9a041f9 . +_:N41113060b02f46d0902a2dc817c014f8 . +_:N2a5079da6dbe4bc2a9f19b3302cf91a7 . + . +_:N92b5c54be32b41efa02e8919a8916db6 . + _:N13423f5ab2ac4318bba91218e3efafd3 . + _:Na1c021a6fd8e483f8634a8067c86f63f . +_:Na191b6d58fcf4de5a6382761588654c2 . + "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language." . +_:Nbfcd987067e94ab2a8a3d66efe745597 . +_:N1cd4eef3ad3a43c2930489523c6ac90f . +_:Ndd592b79c45b49c0b3f0ff7888e5c786 "MAT" . +_:N86b2ce9ef34a47469535068c27e73566 . +_:N9a4aa9f6892548928abe0d5c94e53b58 "P8121" . + "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra." . +_:N313f049fa07c42d2b8c4db33a79579d0 "KEGG_LIGAND" . +_:N369f2f3b1bb04f82a3dbc2d819ca57c6 . + "None" . + _:Nf3cec00c84ff44138980aba811d9d9e4 . +_:N83ecea0707b24cf49ac80437590b9d49 . +_:N5f04ec5371984fc2b0eaa5c19d2a4108 "huge" . +_:N60e999adb28748a09eafec120964b4e4 . + _:N30ff736917e5422fb3692ca45785409c . + . + "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins." . + _:N51602c13754447e8961099ae71eaeac8 . + . +_:N5a6857b4e7eb4cac8810ad2c7bfa3ebe "issn" . + "https://identifiers.org/tgd:$1" . +_:N54db11f1b25946898292055d79efeadb . + "None" . +_:N55f2ff0d284341e8b9913caf1a9b5e04 . + "None" . +_:Nac7202322b6642e88ef206fa3373049d . + "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins." . + _:N972bcc57b56442b3835a806b8400abea . +_:N60efb3f21f524b1cb11aba0271de19ca "ComplexPortal" . + "gerhard.mayer@rub.de" . + "^EGAS\\d{11}$" . + "^\\d+$" . + _:Na52578e1c85f4c6988b65ba13ddf0a22 . +_:Nea9de07ed76a422bb828c238e7904739 . +_:N5a55d8ee439a4ca293248119c5bf3bb0 . +_:Neeca62bb2fb047b1a550296b5b4e9f79 . + . + "https://identifiers.org/p3db.site:$1" . + "24801" . +_:N7756fcb851e44df0a4be984b92490058 "METLIN" . +_:N13e7e2cb7b51427bb415ddb63eed5b45 . +_:N09df55f72d2046f38c039d64c7b4b239 . +_:N65d07f49b7f3479487e3323b6b79cbb6 "IAO" . + . + "A formal ontology of phenotypes observed in fission yeast." . +_:N3bcba086a98a486892cdf833b4ead5b2 . + . +_:N594fe9b15db241408a1410b03221caa3 . +_:N5a78dc600d7749b5a093e96d02acae97 . +_:Neab770d14ead4d9daac0697903df97bf "cath" . + _:N3d614d4804384a46a9ae00a3b8780c20 . +_:N32c43bc0c40d41999ad2157a9c5b0fdb . +_:N3af438364f174a37a0237c905d8f75ae . +_:N76fe3058ee2e4fb3aeadac541d19b860 . +_:N123d008c64c3454ea007bca0c42897e5 . + "DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences." . + _:N4d0021b4cf294a14913a947a03056e04 . + _:Nd4aa2c0272d04b3a8672c37830698ad0 . + "MIMAT0046872" . +_:Nbeae19dab7694fc49d27c85671e76c84 "P2084" . +_:Ne161e1e0802e4f84806633344bd5be6e . + _:N46c2c5b30bcb49d88dbd2fab6b7ee5ca . +_:N8da47ac6c9724597be39362a74741627 "datanator.metabolite" . +_:N1fd56e1e568642729a455ce2118ea0ac . + _:Nfd8b074be9a84f5eae130390bea499ef . + "NMR Restraints Grid" . + "psidev-ms-vocab@lists.sourceforge.net" . + _:N21554d741939497fa923e6df43ec405a . + _:N79019a1f2e2b482396490f71fd8be002 . + _:N0fd636a0ea044d1eaf020c179637d8fa . +_:Nc48df8010e6b4a119e497233d22183c9 . + . + "https://identifiers.org/mo:$1" . + "^[A-Za-z0-9]+$" . + _:N899244c3c6f84691981e22cffb56994d . +_:Nbd3857d53da147299b20034349498033 . +_:Nddb1eb2cb0ab4db28974ba6698f29215 . +_:N88b207513d2b44629ef4f83563f92478 . + "http://www.atol-ontology.com" . + "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature." . +_:Nb02c6708ffb14a829fa84ed95f50adad "MF" . + _:N4351a393b1684bae9589629b17443d9f . +_:N104d1ebd3b6640ecadab829f70becd64 . + "March 2017 version " . + "false"^^ . + "None" . +_:N9c8640cecfca4086b43d3859e8141d4d . +_:N9aefc3b2f1e04b87adce08b5cb6156ff . +_:N5600aa5c4c5c47df9f89976d248485d4 . + "172" . + _:N09df55f72d2046f38c039d64c7b4b239 . +_:Nf38aae21f1f14998bac892cfe9ad4e35 "prints" . +_:N17c80100d176465a8a2352247496901a . +_:Nb58e6069292b4eb7bfc22662b36536a4 . +_:N11274d1d2fd94996838431625ee3c127 . + "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland." . +_:N6544b06e047f494fa6fecbd3c5d3b7cc . +_:Nb790f514b99741ddb291d7b7aa217d50 . +_:N5a0941b6a2e045b2a303aa35c0a67e7d . + "https://identifiers.org/PR:$1" . + "^MP:\\d{7}$" . + "https://www.ebi.ac.uk/ols/ontologies/mmo/terms?iri=http://purl.obolibrary.org/obo/MMO_$1" . + "REBASE restriction enzyme database" . +_:Ne0f95a77c3ae440fafc3cba482a97c18 . + . + _:N01ec2b9ef4b1437eb3dcf29fa25beb81 . + "234" . + "Kaggle" . +_:N7359d206964e4e979a7818af4318fc9c "corum" . +_:Nb2c40c14ca5a4900be17d39a2555e13e . + _:Na62bc2340fcf45c8acc79a7d35dbf125 . +_:Nfae1094dd6c5436a8cce2f9b5c00443f "did" . +_:Nd97d18aabab949708189cec6a5e385f0 "mmp.cat" . + "Barley ontology" . + . + "https://www.ebi.ac.uk/ols/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_$1" . + . +_:N28eb7697f1be4062b3b5adbeb58268c0 "PubChem_Compound" . + _:N79072d7d1cfb4b7d8f8600c0a91d4c8a . +_:Nca78c565bf754c9db435f2aedb173162 . +_:Nb875a74f6e454866a4668dc45a8d8d41 "OBI" . + . + "https://identifiers.org/cpc:$1" . + "https://identifiers.org/medlineplus:$1" . +_:N27e969ef47a44281a75fbc72157ca550 . + "^[A-Za-z0-9+_.%-:]+$" . + "Database of the dielectric properties of biological tissues." . +_:Nafaa018f048e4907b743bd676a4a66be . + "^[A-Za-z_0-9]+$" . +_:N798b0047b2604fcba86c66560a9608ca "UCSC" . +_:Nc038c5433d954efc823f3fe368ad70c4 "bugbase.protocol" . +_:N97ae41bb81904b36bcec5eb04da99201 . + "https://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_$1" . + . + . + "vcell" . + "MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder." . +_:N77045af58cdf47bb91a5c72303e6fe9d . + _:N5afde3d0ae2c4feea9590b40de78e0cc . + _:N49241166c5dd4492ac7403c2ce1e33d3 . +_:N36b41a59c19b4e5c946fec9aca407e72 . + _:Nc364ae0ec4be43bc9112ae43016e86e3 . + "Chicken Gene Nomenclature Consortium" . + "None" . + _:N305ba7ac2c2d4d1098b20af98bd1b526 . + "Histopathology Ontology" . + "KEGG Module" . +_:N88b5761891ec45b68acfea329c86db6b "neurolex" . +_:N73fac5ece78b419eb2110780bb9bd95a . +_:N3b522cb46ed346fb90b2ca5fb80dc94e . + _:N05b79e32af1e414c896f4bbea20ee587 . +_:N22771823a3594304b5bf38d38fea81ae . +_:N9ff5f89284db4a33b4c4757d133e9dd5 . +_:N41720a380ea74d43b4964ee5f5f11e0a "signor" . +_:N3e02f266b9bb4371a20d8e4616128253 . +_:Nf3e149c5a6134f06868d895140049f59 . + "https://identifiers.org/asap:$1" . + "hsa-mir-200a" . +_:N8584e3a431764315a6382f33f91a2a0a . +_:N7ed2a7767af0445c98afe25e05c38eb5 . + _:Nb35d28b8ef394a28a86211becf876d8d . +_:Nb3083308370d41298963ea9990c1e5c4 . +_:N410724d5262243389f10dfc2b17d2ce0 . + "LRG_1" . +_:Nf63e43b34ec341df9aa4bc8e3d3e6f03 . + "https://identifiers.org/mmp.ref:$1" . + _:N98cf09b87c7544ca9b5c3ed3c04d9ce5 . + "http://ccr.coriell.org/" . + "None" . + . +_:Nc045372c7ac5482bb3d7279202d25a74 "wb" . +_:Ndbb8e9b58f0a43b598e988e9c867e94e . + "^\\d+$" . +_:N5e32f4a08c124d7aac9ac8fe94f4c3d9 . +_:Nd56a2fd90ec04a45827aa2a730860a67 "COMPTOX" . +_:N4a1d1ea8176843d5819b4aad60ba04bf . +_:N38d68031731b45fc869f30bf863b9369 . +_:Nd4529167aa644b3eb719224627c2b82a . + "https://www.ebi.ac.uk/ols/ontologies/cto/terms?iri=http://purl.obolibrary.org/obo/CTO_$1" . + "485991" . +_:N355e143330944ddaa4d412560999a139 . + "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype." . +_:N35a1dccfaae84e46924cc885040a2c4e "kegg.orthology" . +_:N1cb5b37356b547c7af6b19f763fa50f1 "ENVO" . + _:N983068dbae6b4fecb088a17bdbc75c62 . + _:N455aac4eb2cb4c0c95ffb5e8051ac4fa . + _:N0e22b53495a6467fbefd92bc16d9945a . + "false"^^ . +_:Nf03ae32997fe4ad7b673f64a284fe273 . + "false"^^ . + "None" . + "^[A-Za-z0-9]+$" . +_:N9ec7a4d689a1478ba09792e2cf35cc77 "pharmgkb.disease" . +_:N9429df94794345c5a72b59727548b010 . + "false"^^ . + . + . + _:N52820bd00d854df1bb1f1846d1ddef05 . +_:N3af91a2840d640fa87b0ddf879ddd7df "ECAO" . +_:Ne1bd9c1a0abc4becb989128b2c367f80 . +_:N0e56f2fe1ce446959dbe3544f2ad7443 . + "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease." . + _:N9b0fc0e0f56c4faba3d6c4ab3868b5f8 . +_:N97c6bdb8047e41b880c056b44d561de9 . + "A miscellaneous ontology of terms used for curation in FlyBase, including the DPO." . + "https://www.ebi.ac.uk/ols/ontologies/sibo/terms?iri=http://purl.obolibrary.org/obo/SIBO_$1" . + _:N3a22d220a7054433b355b081c147c60c . + "https://identifiers.org/subtilist:$1" . + _:Ncb43ae4b33f142fc95d84834c04c297e . +_:N2d86bee4ce134d5bbff8f57251304e66 "lincs.cell" . +_:Naf0a157f1eb9449bbf8883541d40fb3b . +_:N11dcb98434144f8e9825ca72f8d08a62 "BDGP.EST" . + "None" . + "alpha.tom.kodamullil@scai.fraunhofer.de" . +_:N1f01c0ef875a4b429f6431c46b99bf01 . + "A10BA02" . + _:Nf3f9abea057f4bef8a298e93998a5da1 . +_:N14d14e3eee3a4ae78e5746d36598413b "P267" . +_:Ned26d0e4299b48eebed668669a029665 . +_:N75f8180bd21548cab83926236ab6bf15 "P7807" . + "None" . + "https://identifiers.org/tair.protein:$1" . +_:N1dac12f89e0f45099b56f4ba279b498a . + "Sorghum TDv5 March 2021" . +_:N07ccff1dbd11445bbb5344629fe597c6 "gcst" . + "^\\w{3}$" . +_:N79019a1f2e2b482396490f71fd8be002 . +_:N80093443863a4eca874755cb85ef4489 "IMGT/LIGM" . + _:N0c840f41d6434c50a1cf4c7caab8b139 . + "EAWAG Biocatalysis/Biodegradation Database" . +_:Nde1a34804050413faa027afc9020a051 . + _:N022626926638431081aeb826a3c9f368 . + _:N892332231429436daa752baeab01b6c7 . +_:N0bba5c28be574e35bdd2d70acca99355 . +_:Neaf560210b5040838a0c1de8526b4341 . + "^[0-9][A-Za-z0-9]{3}$" . + _:Nf1d924fec68e4208bb99c02ad8a1fcf4 . + "35742" . + _:Nbff79f3a31024f4abc7c5f2ff8438091 . +_:Nd682702553014dae959466074a9cf58a . +_:N9a8e93e0882d483dbf160e630410e766 . + "https://www.ebi.ac.uk/ols/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_$1" . + _:N4fc37fbeba4e4966bfcc952d2109ff27 . +_:N0648155cb06c4694bd24bd8fb7ee8924 "IMEX" . + . + "Life cycle stages for Platynereis dumerilii" . + "1cukA01" . +_:Na5341915d15c4c6c9c123117f2c134c8 "gold.genome" . + "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation." . + "baseDimensionEnumeration" . + . + "Logical Observation Identifiers Names and Codes" . +_:N49241166c5dd4492ac7403c2ce1e33d3 . + "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea" . + _:N4a96af6529a0486db7c78c2e7bbb7cd0 . + . + _:Nb790f514b99741ddb291d7b7aa217d50 . + "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature." . + "^\\d+$" . + . + "None" . + "Ontology of Vaccine Adverse Events" . +_:N7ea9597be16240a993aa8f6d364447b5 . + "^\\d{8}$" . + "https://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_$1" . + "DrugBank Target v4" . + "http://birdgenenames.org/cgnc/GeneReport?id=$1" . +_:N6a5d1624fa2e422da77b11591ca0efaf . + _:N8a93951f8c574da9a55d66f3cc0683df . + "https://github.com/EBISPOT/DUO" . + . + "https://identifiers.org/dlxc:$1" . + _:N6b7ba2bce3f14e7fa5ac785468c29b2d . +_:Naee96f3dd90d42a982e3035c7b734e3f . +_:N6bb922e3c2fe42628987e94acd67249f "mp" . +_:N63a72a294af4458397dba597e2895721 . + "Os01g0883800" . + "urn:nbn:fi:tkk-004781" . + "https://identifiers.org/hmdb:$1" . +_:N5a1ca115ce0347669030c5f631f04de3 . +_:N83530cc599b84fe7940d8ce3c983cf03 . +_:N1ad16de480144f22b9bb0555adad55c9 . +_:Nab270d80455f4cb2b796264e1adbda82 "uo" . +_:Nc2f2cf26ef2d40d0aaf8513cd0d92796 "MYCO.TUBER" . +_:N8c5c7cf79b4b4c7582a214f4db53ca42 "pdb" . + . + "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters." . + "Gi07796" . +_:Ncc6d3760b3dd4100bd5a548d7d6f315b . +_:N1fd56e1e568642729a455ce2118ea0ac "OPL" . +_:Ne8f8a4fade904a5fbd45934a4076a8e5 . +_:Nb1ae02a6ce014ecb8fa7ba49e0affd28 . + "false"^^ . + "0000780" . +_:N382b733c644445d196ddea91ace7e52d . + "https://identifiers.org/viaf:$1" . +_:Nf75cb8e6c76f44caa7e5258cd9822940 . +_:Nf0a033623e904527967fa7dfe1fcb61b . + "FooDB Compound" . + "100000" . +_:Nd329b7b32ac045eb8cdf745130936e1b . +_:N660e089d909c4ba69cc9184e8acf4dc8 . + . +_:N28c0833db85e469cb2ccc1e3d81f0d13 . +_:Nbebf1b4207d0478b9cbcf4ef27879570 . +_:N14ed3dc74f224edd945b9b742a78357a . + "The Digital Object Identifier System is for identifying content objects in the digital environment." . +_:N2dac40e822694d7bbcfa879e7299dffe . +_:Ncea8c147ce8f426da86a9b4f317ae106 . +_:N33a9a21d88fb472ebfa383158d894276 "ro" . +_:N0bba5aa79eb141dbae0ff4ab1e848447 . + "An ontology of minimum information regarding potential drug-drug interaction information." . +_:Nd850a9f26d9b450da83d7b7eb36c6b46 . + _:N28209c73cf5d4bbbbae27de9cdbef703 . + _:Nb1ae02a6ce014ecb8fa7ba49e0affd28 . + "HGNC gene family" . +_:N952e982d252c41c7b50011d930838366 . + _:Ncf82a45b4b9c450cb4d7a21b6de7a2d4 . + "false"^^ . + "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement." . + _:N624b04e6eb184c82b91c74875912e9cd . +_:Ne141d82c3b504833a18a3d2195642ea3 . + "https://identifiers.org/cameo:$1" . +_:N0743eb345dd94a2b97c8a76e2195c97c . + _:N88cb00905c234988a6fbc1c27a4b70e8 . + _:N14b145c4d3ad49c4aa91667ceb7e4367 . + "None" . +_:Nad122a58924f48b5bf192414cba0d2d9 . +_:N711480100f0345e1a57dfc0e8943ea53 . + _:Nc28c7af3c1634cbcbf197adfefa02c7c . +_:Nea58fb47abac48b19109284e9097190e . +_:Nce94d7f108d048989700c3f2c821fe2b . + "bsg-000052" . + _:Nea2ca62e57654db5808786583f58f3df . + "false"^^ . + _:Nd842022fd69a40d28d75224b6c33fc40 . + . +_:N54db11f1b25946898292055d79efeadb "PHYTOZOME.LOCUS" . +_:N650b607c0fe64b4699babf3345c87407 . + "rlwalls2008@gmail.com" . + "^MCDS_S_[a-zA-Z0-9]{1,10}$" . +_:N4e32f72347d84aad953ed9aad55dd302 . +_:Ndeff8991108b45f3967d4b0e7bc55f5a "CMO" . + "Melanoma Molecular Map Project Biomaps" . + "137" . + _:Nfe1f64f2df5346d2a37a1079c5e32e57 . +_:N821122c9635940e79501b903341e5a59 . + "None" . + "^LSM-\\d+$" . + "false"^^ . +_:Nd4248321dbe04d8e96b089137fa11962 . +_:N06a9b2e521c841fcb79cc3b04625453f . + "Mass spectrometry ontology" . +_:N812ca9ddccbf4adb8bbd189344a9dfde . +_:N21ff48392041431898b89b081c3d324b . +_:N2dbb8c291a384f878fc5c9f1a9ff2f51 . + "false"^^ . +_:Nbe46fc091bdd41ceb970b580d4811f09 . + "GEO_000000021" . + _:N47ab278a23ef4431bbc212d37b2cffb4 . + . +_:Nfee5ecda968348549a5cf7ae1e3cbb57 "licebase" . + "^[A-Za-z]+$" . +_:Nf56303bf62b344ebb78e07074d3bf902 "pco" . + "Cryo Electron Microscopy ontology" . +_:N9f0f6bf7559c408b832f5b2544f02df1 . +_:N31a558f1d8ea44d28dd9028c992b5335 "aop" . +_:N8f253e8685854c17b906a7669d207d98 . +_:N804635d738084f439a1fb3796c0963d5 . + "None" . +_:N65e3223d2977407b892f41e3a94709cd . +_:N7c0f88826f534403a0a6875565ddf259 "vgnc" . +_:N7820932cdcab43ce847935d3dc8bff59 . + _:N05c74a7241fc4c3caa374c175cf71112 . + _:Na00bfbf203fc40fbb63ecc2527a493f9 . +_:N78a37736ae5341579e88dc7b83e18477 "homd.seq" . +_:N6dbdb66ec8714ea5a23bb2eda18533a5 . +_:N5d7582520af045bdbabe819b2044b899 "jcm" . + "https://bioregistry.io/registry/$1" . +_:N8ff8bc55f7234ef98c6378a56f07fcce . + . +_:Na96b4e5161ff475881f33023e1879319 "OARCS" . +_:N7a01610c10b149c98907a8e3bc48f12e . +_:Nc9382f5090b44f158a7caa22ed4ff326 "doi" . +_:N7e3379b8d5ff41289ba7b006c3caeb69 . + _:N1f01c0ef875a4b429f6431c46b99bf01 . + "^[A-Z-_0-9]+$" . + "false"^^ . + _:N0b3788d004e74875be5786469829ba7b . +_:N916c948b49754a83b4e10fbdf97f5d34 . +_:N3687da029cb9449889527882d1a97d98 . +_:N519e17f461e34a8789b636876cae0475 . +_:N5db5d0134a3b4ac3ab6ab94430f9238d . + "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes" . +_:N3f74855957cc4290b5553ec37b98e070 . + "None" . + "^\\w+$" . + _:N3f7a1da690f5410c9534a3267e53cf43 . +_:Nbdbe321b30fd4b7b9a3b6bb44ab3bdbd "EchoBASE" . + _:N58b533132874457bad1ced712d51fcf8 . + "https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo" . + "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information." . +_:Nc763a70f58794bdab2c0dac66d81425d "FIDEO" . + . +_:Na849e2d5eb284c13a154741aae47d252 . + _:N96965fa798de4e188d1ef53ab5c3b85e . +_:Nedb83935194c411ab485ff06753795ef . + _:N63a72a294af4458397dba597e2895721 . + . +_:Ne37dbf4413fc4ea2b4f91c7d2a033ac4 . +_:N076be8bf96da4c6ba8992f999d3d571a . +_:N4742592f576d45f19b851d4bdbb3ba30 . + _:Ndbc973e032a84cabaac640a6a04dddd2 . + _:Ncc6d3760b3dd4100bd5a548d7d6f315b . +_:Nfb3fb2dfd41042ca8102dfe58ae938b6 . +_:N4ad3ed05adad4d9290ca20f5dbfbb97d . +_:N53cd495bb3894b1cb95c5e424ece5545 . + _:N13c2a7e397cd4f1cb0943fe22845ac75 . + _:N7308c3182ab54067bb0b8db847c7c477 . + "https://drugs.ncats.io/" . + _:N307bc5e5705a46ab8249f6a51548e02b . + . +_:N68022e2b731d407e91d3ed7aced722b0 . +_:Nb7f0fa8d803944f6904e1e1c6afcd174 . +_:Nae49ec024c0d411782983f04a9bc39f6 . +_:Nbd80b112bffb48d5b2d687dc5db2fe95 . +_:N664823fdf7c54d128cd718b02f85d1fe . +_:N78dc477b14514923861def6b27bd6aed . + "version 2019 - pvs" . + _:N3e34e079a5274b909682181fca951e57 . +_:N6e987edf9ffd4d508330b3a050c80f70 . + _:Ne8e6b92a357d4087a11314b6fc56b6f0 . + "None" . +_:Ncb43ae4b33f142fc95d84834c04c297e . + "false"^^ . + "https://identifiers.org/bindingdb:$1" . +_:N1ad16de480144f22b9bb0555adad55c9 "arrayexpress" . +_:N979906e2029142dbab2a906081b1c9b4 . + . +_:N66f493e467bf4c589bf70c3a132be9ca . +_:Ne78b15ff7e0e437ab5e3000eb641cbe6 "uspto" . +_:Nf7c3d868ac454e8ba97fe2ec93ef91ab "proteomicsdb.protein" . + "101" . +_:Nd58c6b898a6c45d88f19680160c0a00c "HCPCS" . + "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis." . + "false"^^ . +_:N15ac447319ba47d79b2d318694ae3b39 "epd" . +_:Ne5c954e6d3424daf9976367fe60760bc . + "The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project." . + _:N5897728f36b14220937df223f31ac564 . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information." . + "^\\d{7}$" . +_:N241ee78c18b74149bc646dcced099be4 "MEROPS" . + "AN0097748" . + "^MIR:001\\d{5}$" . +_:N013bb45c91c94c44b70855ab68523acf "IAO" . + . +_:N8686c56490a142a18abd9fef2c0d6878 . + "https://github.com/SDG-InterfaceOntology/sdgio" . + "https://identifiers.org/cadsr:$1" . +_:Nabd131948fb547bcb3895bfa2bfa01fe . +_:N23d46f733fb44683bbada310dc68e00e . +_:N3a7f3921409842fca32fbd8fe2dc9dea . +_:N203d16e663434909a42ceb8c8ab9ae49 . + "None" . +_:N3f22814277af42608b5fae3d6b69b157 . +_:N6acf7910060a452394b1eb3af515ca70 "TREEBASE" . + "c0001" . + . +_:N0f077154ab6545a5bda6324d65bd3928 "protonet.proteincard" . +_:Nfca19da5d2cc4360bfd3272056bf2e89 . +_:Ne2d4f82a471d4394a3cc3f55600d1d63 . + "nasa/kepler-exoplanet-search-results" . +_:Ndb9cbfabb93645ef834e33a03d41c767 . +_:N19159d206c124ea3b5a68f64e47bd6b5 . +_:Na86f9a9bef4c4c0d9ecbb02bbb21bfa8 "kegg.pathway" . + "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation." . +_:N22012ac256af4f259473ef56bbd5bd41 . + "APID Interactomes" . + "None" . +_:Nc0ab54e7c8834494a4ad91e220ac2595 . + "https://omabrowser.org/oma/hog/HOG:$1" . + _:N557095b2021c4d5c97d2b8fafd1371a2 . +_:Nce2d12a386224a2f831cbba54672321d . +_:Ne4cf3ff7560a4ae29a11d34fe140a105 . +_:N73a5bf7f831c4174b4d9783d7722e28a . + "Database of Aligned Ribosomal Complexes" . + "Rat Genome Database" . +_:N91e02b43aa18490f8952c1c4892924e2 . + _:Nd55c236bee914b1d84274e08322cdd54 . +_:N62ae50df640c4a3a9f4daccc844f0547 "hpm.protein" . + . +_:N3d98eb2ea084445b94de07f5894f89d5 . +_:Nf100bba0899a4dbd94602e7081c50a47 "FLOPO" . +_:Ne53eca05f6a843df809b2b9322ab49a2 . + "None" . +_:Nac6acaaa1f084d689529eea3035530f2 . +_:Ndd6bd5e7334d4f24a7c3f0f34a674cff "idoo" . +_:Nf1b61650628e4965afd67d3a9466b6ab "MYCOBANK" . +_:N1b49e39a2f084d8ba2dbf6e2f6eafdd2 . + "false"^^ . + "Chemical Entities of Biological Interest" . +_:N41113060b02f46d0902a2dc817c014f8 "so" . + "true"^^ . + "Mental Functioning Ontology" . + "These resources were listed in \"Sharing biological data: why, when, and how\", which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible." . +_:N7895364633cd4d83a51bedf952e7314e "OBCS" . +_:N5a2f226f7f8141f78330635c94bcd38a . +_:N1f2125934d7047eeb749daff7b026706 . + _:N1a5cf1dcd13140968275dd88dc6bc1aa . + . +_:N056582aae81c485494bb426b2931a622 "wormpep" . + "false"^^ . +_:Ncb97d12d28e54127a0936620d3511f7f "IUPHAR_RECEPTOR" . +_:N08f66f88624b4aa0a6882f968bf76986 . + "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d" . + "https://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_$1" . +_:Nae1591770e6c483ababa61bd4aeaeebc "FOBI" . +_:N83f18a32ca93429b9bc64a20b9de5b69 "UNIGENE" . +_:Nd83bc23440ce42da8f8c494c2cae5b15 "OMIT" . +_:N05a5d3a9dfcc413fa0f14a15d978f106 . +_:Nae9e38495d444c23ae6b635fdd549999 . + _:N2360cc03817c413a9617bea7a12246d3 . + "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment." . + "RiceNetDB Compound" . + "http://www.cropontology.org/ontology/CO_327/Pearl%20millet" . + "SCV000151292" . + . + "None" . +_:N8aa8089cb5474b5796a93089d0c67a5c . +_:Nc62d38b9a24a4862acdd61927b996ae0 "ogg" . + "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures." . + "None" . +_:N45aca29a83fb4bb9a80209d6f8584ac8 . +_:Nb5dd2ef4da8b44bc970c339408366c7b . + _:N09acafa1962646c5b4c3285f2cf60bfc . +_:N237fa065f36643309d5f2247a3871a45 . + "https://identifiers.org/darc:$1" . +_:N1c4b9df7d2f8461cacd3e6a44c49b9c1 "ido" . + . +_:N7b71e25f39bb40f6a44760cdcd7407e2 . +_:N4baa2608862c4b79a6ef4369fd011884 "CTO" . +_:Nf79f194efe014147b71f608bce06f7fe "CLINVAR.SUBMISSION" . + _:N706e7bd775eb4012a9c697836b0dc83a . + _:N4db803738d0e4581a73829b37558ce0a . + "^OSC\\d{4}$" . + . + "1915" . + "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry" . + "https://www.gwascentral.org/markers" . +_:N50a83ee7f12a4458a85f9fbfc4799be2 . + _:N17cb84b0e5c741f5aa79303d9ec2f33c . + "bioRxiv" . +_:Nd31dca0c55dc4a839dce572bed6b1f62 "cabri" . +_:N519e17f461e34a8789b636876cae0475 . + "Q9UKQ2" . + _:N50c1c070b34a45948a3d3be2872f9b40 . + "Coronavirus Infectious Disease Ontology" . +_:Nf86770241770422eb4e5d1786330168d "kegg.environ" . +_:Nc8ecf845bc064929bfbc6f8ad6c91e7b "datanator.gene" . + _:N0d6d631e7f124914ad91d658948b1a0a . + "http://biohackathon.org/resource/faldo" . + . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene." . + "https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo" . +_:N67314cc7f32543e3bb67b4f2809fdf33 "asap" . + . +_:Nd2b5996fed224623bd6027e0d5b34902 . + _:N4ff4ed80fd664d078a0ea31c8175d80b . +_:Nf0c42a4c56bc462a81021e592631db44 . +_:N2cd0977b9a1541019bf7ff37b75f4760 "proteomicsdb.peptide" . +_:N2d6f11e8c8674dc38e77b759b4c348ed "echobase" . + "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI." . +_:Naa10a171a2014a8b90a6efa2f30f2938 . +_:N06a4323757b84dfdb324b81f3ecb1bb4 . + "Mosquito insecticide resistance" . + "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines)." . + "^\\d{7}$" . +_:N65892fc71b1349b88a4699c997008745 . +_:N3e3eacbc026e4abeb5fd8dd4d92b67f0 . + "l.andres.hernandez.18@student.scu.edu.au" . +_:Na3c6524910eb4d528e5800c6aa808111 . + . +_:N4fe206b6aa764807abed9ee164ef62b6 . + "0032571" . +_:Nb35c7d4b4bac431f9026211d8ac18eeb . + . +_:N1f2283aea700427b94483c979d2e74f2 . + _:N2dac40e822694d7bbcfa879e7299dffe . + "https://www.ebi.ac.uk/ols/ontologies/idocovid19/terms?iri=http://purl.obolibrary.org/obo/IDOCOVID19_$1" . + _:N84d31a6ecd654f559198d686457e6c41 . + "PhosphoPoint Phosphoprotein" . + "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA." . +_:N104d1ebd3b6640ecadab829f70becd64 . + "false"^^ . + "https://identifiers.org/arrayexpress:$1" . + "https://identifiers.org/gnpis:$1" . + "CharProt" . +_:N9c8640cecfca4086b43d3859e8141d4d . +_:N1e75f09f2c9444db98de62b6965f0ea4 "MFOMD" . + "1200" . +_:N982406cb66c1460698b1174fd99d031c . + "https://www.uniprot.org/keywords/$1" . + . + "http://www.w3.org/2000/01/rdf-schema#$1" . + _:Nad97919a453841efa74914e62990be25 . + . + "NeuroLex Dysfunction" . + "^[A-Z0-9]+$" . +_:N9f6ab38300fa4dd5863dced510bfeb58 . + . +_:N3c10d4d54d6447318304eb8fc54219c9 "plasmodb" . + "https://github.com/Southern-Cross-Plant-Science/cdno" . + "ftp://ftp.bgee.org/general/ontologies/HOG.obo" . + . +_:N8fd0c0ed6e83418687a5ca2a443e2277 "vmhgene" . + "false"^^ . + _:N239e103147e1414ebc05120c3a4e9d17 . +_:N3dfce6339c4447d990ec1fa5c85cb74d . + "Gm00047" . + . +_:N337ed5c2151d44a4a56c1448b6071a7b . +_:N4dbb1d5c927e44ef900c84c36b3f544d "hcvdb" . + "None" . +_:N888c4ca365824b069d56738ded1eb5f7 . + _:N1a268176bfde44faab0ae2ee66d61516 . + "The Echinoderm Anatomy and Development Ontology" . +_:N403c6032e76441f7ad5caeecbd521ab7 . +_:Na9f92c0edcef44c99f39ffce4be611b4 "idot" . +_:N2eefea3300564918ab683d6e55939a0c . + _:N1dabbbda973a4439b5b9d171058039ad . + . +_:N21754c88bb2440e1a3b2a2596876536e . + . + _:N2366dc52b8f24c58a6fe8dd53cd8b494 . +_:N2e67d130099e43aa8df726f1adcbfa9d "ISFinder" . +_:N3b1f353c3e03402aa0ac8cb4c96dc153 . + "Neuro Behavior Ontology" . + _:N403c6032e76441f7ad5caeecbd521ab7 . +_:Nddc5591f60a243eb891c2c22d17aad4c . + "false"^^ . + _:N34383e16f7c947e9bed1d65f62bad5f8 . + _:N67443bb5b82346b4b8273495a126f3c2 . +_:Neeca62bb2fb047b1a550296b5b4e9f79 . + _:N0cec9486fde94c9398be40f67deeadd0 . + "^FR\\-FCM\\-\\w{4}$" . +_:N54de5aa3f0364e399d91d1e290ba28ab . + "https://identifiers.org/antibodyregistry:$1" . + _:Nc7621a43627f4ff6ba338a5573019cf7 . + _:Nb3083308370d41298963ea9990c1e5c4 . + "None" . +_:N0deb1038735b4df795775dd8559b05df . + "None" . + "false"^^ . + _:Nd083ba5fa9a0442b82850f69a81e323a . +_:Nd211a06b19f045d0a8d2c74e82658cca . + _:N70338455269d44b1beea469adfefa964 . +_:Na9b0ca190dc24b04b5d90e0ef28c65c8 . +_:N1b06e0e75e0b4eb5868f507fb3b87416 . + "https://identifiers.org/atc:$1" . +_:Na387bc23b67247e08cfc36ed477f816a "EHDAA2" . +_:N1ba7e9b994834ff9abe44f7672ce3e8f . + "false"^^ . + "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings." . +_:N5cbd0843365648eca21fb8447aa00087 . +_:N741b002591c84018a4848d5aa4d3d1b4 . +_:N2a2a08a7b50e4591a31a998ac8561402 "xco" . +_:N45054942e1bd4430b7eb397bb6c3f7c8 "PATO" . + "None" . +_:Nae88c5b2ef314923b4238073336d5ffd . + "^EDI_\\d+$" . + "https://identifiers.org/opm:$1" . +_:N12ef5f510cd44885b31b5fa46b533fa7 . + "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013." . + _:N1f8c85e279244e9ebec8471c6f06da5a . +_:N85704ef5c0f643b1a599f6364496ef37 "P352" . + "^C\\d+$" . + _:N2fe7892b80284a459a86c3474873c3ff . + "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information." . +_:Nb3083308370d41298963ea9990c1e5c4 . + _:N0ec9c4ab425541cdb20a0252c6a1f18d . + "None" . + "ProDom" . +_:N4442d33de0b64131a04b90b8899950d6 "ORIDB.SACCH" . +_:Nb28bfb68df7e422694c18fd0f01471b8 . + _:N2e7dcac0ddff469989cb0cb8eed6a744 . + "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)." . +_:N8851d4dbf2fb49e5bf0de00ab3119041 . + "2170610" . +_:N388bcdc34fb940bbbb5c64eba3eb2b44 . +_:Nc1f900adad0649d1a915c5da5f2236b8 . +_:N524f46b3ec74452ea2b30e93f63a88bd "vfdb.genus" . + "false"^^ . +_:N4a1d1ea8176843d5819b4aad60ba04bf . + _:Nd56898ea16cf4568b61bd43a80ccec71 . +_:N2bf6e0208f3c46b3a14ffdb4a5fb8e05 "P233" . + _:N09d018d562964490a9eb14b44120aac3 . +_:Nc8416aadb1cf4368b6a5462ee8eb1794 "ERO" . +_:Nc22e4a7a8667439a8de989a01f484a71 . +_:Ne89b15d47a704a3aade69182927b50c8 "aeo" . + _:Ne46dea69930a412b845d197b70b80340 . + . +_:N307bc5e5705a46ab8249f6a51548e02b . + "5fde96bdc5f1aa9ff0cce18a" . + "RepeatsDB Protein" . + _:N52fec8905ad74f48b5ffc646500ecf94 . + "https://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_$1" . + . + . +_:N1114af658b8849c7bcf120b9138f9262 . + "Simplified molecular-input line-entry system" . +_:N4d349fd5393642cc9cb06cd449a5898e "facebase" . +_:N4d2937a770d74a058e4c5f83f79004b4 . + _:N0cd29525d4d04c5ebf701a1eb8af2d5c . +_:Nd56a39b6e8b64646a56d00858863ca64 "MS" . + _:N928db7eabdf6484fad8c2e88dc38c18c . + _:N28c0833db85e469cb2ccc1e3d81f0d13 . + _:N89ecc392a94642438a2aa9b57419a392 . + "None" . + "^PASS\\d{5}$" . + _:N6211d2cbfb2d4a5f944626a97578df5a . +_:N436edd5aa6fd42c7bc21583cb3cdb2f6 . +_:Nfa7327d5fec6470eb1d5867dd9005bdc "omia" . +_:Nfb55154509de4a298f707595df603b1d "FIX" . +_:N2deb41c404eb4459a20814454ff42b53 "PHOSPHOSITE.RESIDUE" . + _:Nc48df8010e6b4a119e497233d22183c9 . +_:Nc4dd80a36e214f148cbe353bd5047ffb . +_:Nb429cb01cfdc4ff081febf56fc74f6df "iuphar.ligand" . +_:Ndaaff266250c4fde9e96fde8ac2f11e0 . + "^FB\\d{8}$" . +_:Nd5e5dfd1972f4609bbc5e5d4466b2935 . +_:N55108c393e2640b0b162c2d00f54faf7 "MMP.CAT" . +_:N71dd678147ab4664bbfc578e83ff87ad "nbo" . +_:Nf8a02cf1098e42c2a999b49b5e1cb151 . + "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names." . + _:N8087e5df8dcf415ba0ab62206a4e49c1 . +_:N1dac12f89e0f45099b56f4ba279b498a . +_:Na9f92c0edcef44c99f39ffce4be611b4 . + "https://enzyme.expasy.org/" . +_:Ne0e7803396544095b379c0a972c48eb3 "ANTWEB" . +_:Ncdbeae57f26a4b4fb06ced401a30e440 "NONCODEV4.RNA" . + "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features." . + _:N1c427b1f26c6433c9135cc8a90a8c170 . + "false"^^ . + _:N0db4a45cf66e454084a841ef77f1a0d1 . + "MMAR_2462" . +_:N99d7c4231c4e41bf8e8bc314beb93a21 . +_:N0989c91828f04dbfbb8099d8e0627e7b "OHMI" . + _:Na3f4e1b16ede445992a72df4b6860645 . +_:N60a7f0e71cb645b1ad9176fe2cebf771 . +_:N77962d865c434b5f93bd4e7f1d48ecb9 . + "https://identifiers.org/jcsd:$1" . +_:Na07a0e1f9a514992a9d3a9d551f50a6f . + _:N96d50ada165f43239347a3911fef3a96 . + . +_:Nbbbb026372da489baadb376a52feec1f . + "http://fungi.ensembl.org/" . + "Pesticide Properties DataBase" . +_:N48e434b8d5834e888630659413fd230d "icdc" . + "false"^^ . +_:N981d5bc0dae74f9d9dd88787dd763fad . + "ITO_01625" . + "P3DB Site" . +_:N244d728b56084ce48bd419f0201fad66 . +_:Ndab967e586d74964b4fd1918fbd470fd "PDB.LIGAND" . +_:Ne797098ef77246fba87a7c8c90621126 . +_:Ncb16fad83be449218464ecddbbd11f78 . +_:N4bd885249e3244d5a1d8671d9440332d "drsc" . + "keilbeck@genetics.utah.edu" . +_:N9813954146124bde8e11424bc6ede5e9 "hamap" . + "https://github.com/obophenotype/biological-spatial-ontology" . + "https://identifiers.org/peptideatlas.dataset:$1" . + _:N686519e4e3ee4619b9bfa9f8f1238a4d . + _:N6e987edf9ffd4d508330b3a050c80f70 . + "AOPWiki (Key Event Relationship)" . +_:Ne739ba7d49e44a29b5ca52526c37e5f4 . +_:N157b058f79ee4e41a4d2d9b992a739fc . + "https://www.ebi.ac.uk/ols/ontologies/mpath/terms?iri=http://purl.obolibrary.org/obo/MPATH_$1" . + . +_:N118b39ffec344e72983d760c451ff901 . + "^PED\\d{5}$" . + "Sol Genomics Network" . +_:N55ffc9a9f1b54573a766100fc961437d . + "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence." . + "OGI formalized the genomic element by defining an upper class 'genetic interval'.\n\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.\" \n\nRelated paper:\n\n1. Yu Lin, Norihiro Sakamoto (2009) \u201CGenome, Gene, Interval and Ontology\u201D Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)\nYu Lin, Hiroshi Tarui, Peter Simons (2009) \u201CFrom Ontology for Genetic Interval(OGI) to Sequence Assembly \u2013 Ontology apply to next generation sequencing\u201D Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)\nYu Lin, Peter Simons (2010) \u201CDNA sequence from below: A Nominalist Approach\u201D Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)\n\n\n" . + "A-GEOD-50" . +_:N76f029a55cdb447891ac2e4b710d2c55 . + "false"^^ . + _:Nb07ff3e7597e401eb8c7c81e0e7fc5a1 . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes." . + "American Type Culture Collection" . + "Developmental stages of the Zebrafish" . +_:N12873d1fefa14e18aaa04c197c5e25f4 . +_:N17f98bd652e340eebc27d3044aeb34cd . + . +_:Nd4f13eba43a9439d8bf5b986cdfa0222 "string" . +_:N88ff848776274409b15d1a5b496d2b0c . + "None" . +_:N24948dd6e2a2428782e4ddd4587b4136 . + "None" . + _:N1137cffd29aa453ea2c4a95c747317a5 . + _:Nd57d9e94855c48f38878f354bf4ea971 . + "https://identifiers.org/uniprot.isoform:$1" . + _:N6787034b7b734a298703d2c79ab3d6a8 . +_:N253c7a7c5cf749529e8033085ee32e4f . + "None" . +_:N1ad16de480144f22b9bb0555adad55c9 . + "002678" . +_:Nd5e592c5822f49638166d467ab8e701c . + _:Ne53eca05f6a843df809b2b9322ab49a2 . + "None" . +_:N42267f8133d04a73bdc60b855971ba27 . +_:Nd4ffd9ab70c84e4f834270290d94a8aa "ecto" . + "Benchmark Energy & Geometry Database" . +_:N9c85fecb71094fc2891b03a3e5bf98e8 "bioproject" . +_:N66ce51d864b8498882ed8ef83e79f61a . +_:N100e507cf33945c38379b493a6f42103 . +_:N771e1433af004242ba317966eb61c1a6 "cdpd" . +_:N5ff5a89750ae452495906ad2c09baa1a . +_:N0da49d7a03564dc59df13a8e56052fdd . + "Unified Phenotype Ontology" . + "MIRIAM Registry resource" . +_:N7ce98b40f5fd447ca11b3b8c7dc7fd68 . + "false"^^ . +_:N14bc2b7fd2b448dabb6650eae297b2dc "cco" . +_:Na5de20799b3146e69c7f382fff739d13 . +_:N056582aae81c485494bb426b2931a622 . + _:N493cec18ed004898b7fc74034f958e48 . +_:N925cdcb585ca4ab4a66a58352393c4bd "DEGRADOME" . +_:Nd5df0329d19e499c9f02224689a11aa2 "oryzabase.strain" . +_:N4ba31b4e506c4ec08c83661360f4c44a "massive" . + "^HIP\\d{9}(\\.\\d+)?$" . + . +_:N22ba4ed15345422ca502294a5c09b563 "oryzabase.strain" . + _:N40eb79a7e1cc4001adb6287243de59a0 . + "Plant Ontology" . + . + _:N3e906588476740dcaa71f31f2f96e626 . + "288" . +_:N29b21a4d2b32496f934f1d9e44817b05 . + _:N197e4d79a0d741d696f5e906f7f9ae42 . + "None" . +_:N6d46bd4705634a3e9adc95e9eb432350 . + "HOMD Taxonomy" . +_:N495d9d40d62c423cae1c00fb7322cb29 . + "aap-1" . + "E-cyanobacterium entity" . + _:Ndb791e987bc74ca1a2d1c80cff67dabb . + "http://www.cropontology.org/ontology/CO_335/Common%20Bean" . + "NMR Shift Database" . +_:N9e27caa0b2d4461a834f2bfeedac28f8 "Prosite" . +_:N4e32f72347d84aad953ed9aad55dd302 . + "Salk Institute for Biological Studies Accession" . + "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites)." . +_:N949b4e181ef74b0483747738b2a8eb96 "FBcv" . +_:Nf84b13d2096043299b21a882561e62ba . +_:Nf4c7a5e7d855452ba93d0c2fc4e96a2e . + "https://www.uniprot.org/diseases/" . +_:N093988891fe64128b8fc54f4046aeb49 "LINCS.CELL" . + "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read." . + "https://identifiers.org/ncit:$1" . + "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies." . +_:N267b770c69f94414b0a55d5140ab4bba . + . + "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology." . + "http://www.barcodinglife.com" . +_:Nd528415861074290861426500f875290 "aspgd.protein" . + "https://identifiers.org/panther.node:$1" . + "https://identifiers.org/hdr:$1" . +_:N804635d738084f439a1fb3796c0963d5 . +_:Nef0af9916c2745c89eece2269cdd3bee "prints" . + . + _:N139cbbab8d4e46f69a4184069c907566 . + "None" . + "CHEBI" . +_:N93c2a0a434054ed0abec243e622c9011 . + "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps." . +_:N34fa1b0123384afaa68901b49e6e9e5b "ELM" . + _:Naee7dbd63c054373ad702d392278c915 . + . + _:N224adacfe06a4792af1ff13dd6d030c8 . + _:Ne3abc5638c5346ab861f9862c32c36f0 . + _:N4d90418d6b7641bc9ca5d0d398602f24 . +_:N8a80f4bd8cce4c7e802ef5b81688b9ac . + "sov:WRfXPg8dantKVubE3HX8pw" . + "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme." . + "None" . + "GR_tax:013681" . +_:N1aeb4b46bce24125929922c5625d3b92 "DRAGONDB.DNA" . +_:N162eb5e296a046049ea6203e29c01aba . + "None" . +_:N39fc3df53c004ad09ee2a5880561db3d . +_:N3f74855957cc4290b5553ec37b98e070 . +_:N1fb38188696b4280b64a58d6165bfa41 . +_:Nb35d28b8ef394a28a86211becf876d8d . + "None" . +_:Ned5b0a610bda4b0d80132e8f51ca5d0b . +_:Na981c06ee6cf4fdb8fce35bec170eb2a . +_:Nf3b88e2151e3455892fbcb4466cb6130 "occ" . + "^[A-Z-_0-9]+$" . + "https://identifiers.org/funcbase.yeast:$1" . + "https://github.com/OPL-ontology/OPL" . + "false"^^ . +_:Nb4f01873cc414bce9e25c71bbb0ab066 . +_:N40718bec5b2d4dcea9479edba9b1a26f . +_:N498ec71c672c487faf82e641d72ad168 . +_:Nf66632b779704032b01cbc263a231b98 . + "Yeast Metabolome Database" . + "None" . +_:N0cfbf7b6f406434dabea6aa977faf4df "ordb" . +_:N184226fd74be4ee2aaae8f86fe3d1a56 . + "101775319" . + "^MINT\\-\\d{1,7}$" . +_:Nedb83935194c411ab485ff06753795ef . +_:Nec29b08342a048da88d4b210c4cf62c0 "VFDB.GENE" . + "International Union of Pharmacology" . + "caripark@iastate.edu" . +_:N0f0b9c1def8649e89a6365d94e3f628d . + . +_:N0f6f666d8ee7487a9d7c17aa7ed80a03 "WBbt" . +_:Nc47b286a162c47069cac54f85f084c62 . +_:Na388703ca5e34bc39ad46f58e88ab2ae . + . +_:Nfb3fb2dfd41042ca8102dfe58ae938b6 . + "true"^^ . +_:Nd0da5d91b8e94cee8ba5fec4962e2436 . + . + "None" . +_:Nee77eba3e0bf468ab18c448e942987b9 "orth" . + "None" . +_:N91541985c3cc4936b30a976f5bb3fc5d . + _:N829f24f4774a4f79b04dd982107e5f0e . +_:N4f902af567dd4f769af48d4ae56beed3 "EGGNOG" . + "ExAC Gene" . +_:Na7715ab86bd5424a80ee6677a2e4b2ba . +_:N436744b48d6e4173bbb56938ef649195 . + "AP011135" . +_:N28c0833db85e469cb2ccc1e3d81f0d13 "MULTICELLDS.SNAPSHOT" . + "false"^^ . + "false"^^ . +_:Ncf6027a0d37246fcb2ce39e666aed170 "LBO" . + . + "https://www.ebi.ac.uk/ols/ontologies/ontoneo/terms?iri=http://purl.obolibrary.org/obo/ONTONEO_$1" . + _:Nc04e9589a9dc451d9009071a57ebae03 . + "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. " . + "01467" . +_:N3de3ff078c054ce7a6cacbba245a5200 . +_:Nf70a267aad174f9f8dfe8f659f5620dd "AAO" . + "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information." . +_:N0f0b9c1def8649e89a6365d94e3f628d "NORINE" . +_:N8193de38a54d4827be41481ddca10a61 "gsso" . + "^DTXSID\\d+$" . + "MobiDB is a database of protein disorder and mobility annotations." . + "Ontology of standardized units" . + "https://identifiers.org/fbol:$1" . +_:N86ffa9bc2a534fc3b924881b63981fc9 . + "https://identifiers.org/giardiadb:$1" . + "false"^^ . +_:Ndb83fc4153384227a4092cdb714f7395 . + "https://www.ebi.ac.uk/ols/ontologies/clo/terms?iri=http://purl.obolibrary.org/obo/CLO_$1" . + "false"^^ . + "false"^^ . + _:N6f2ac14b844f43469270fa8b2fcfaa93 . +_:N20059fffba9b41fc93a0affa29491ff6 . +_:N861fdc6bafd7478e8ecc9bc9f1bc4a8a "gramene.gene" . + "https://identifiers.org/bao:$1" . +_:Nf03fb811408b451cab00390f5a375d78 . + _:N3ffc0317b4f14c27b94248a98bd105f6 . + . +_:Ncd18f693071b40d2a3f73fd9a4823ed9 . + "false"^^ . + _:N53a5148bf47047ad8c626efbc85e7212 . +_:N203d16e663434909a42ceb8c8ab9ae49 . + "false"^^ . +_:Nf3f9abea057f4bef8a298e93998a5da1 "OMIABIS" . +_:N178f5e6c3d0d44678b64e58af14356b4 "XCO" . + "false"^^ . +_:Nb6b8a5bc05a6476ba063e466d695af2d . + _:N9c8ab7b02afe4a02aa187774a8336580 . + "false"^^ . +_:N984648f01f624e8592e8f1d14da97e15 . +_:Ncaae98bf242d4ce2958146d76c9077c8 . + _:N6380355c422d45b9957d137f59637cc7 . + "23" . + "false"^^ . +_:Ncf35b4e3993b42efa7a8db18e0b46e87 . +_:N88c27e96d1e7473b9d6cfd5020fc65b4 . +_:N50c1c070b34a45948a3d3be2872f9b40 . +_:N2deb41c404eb4459a20814454ff42b53 . +_:N29dc67dc40a9472c89d57743f12ce6ac "pmap.substratedb" . + "HGVPM623" . +_:N00cd62fc213a4666ab6cd39529c5fd5f "tissuelist" . + _:Nc2c1652fec084e29be6e744e9da81f05 . +_:N59aa946b5b254fcf9bc519ff2b45513c . + _:Ncb97d12d28e54127a0936620d3511f7f . + _:N8945ee0289b54c40bee015e0c1854eb2 . +_:N0c2db33d23c6471f92f4f0f7ccab2712 "vbase2" . +_:N5e32f4a08c124d7aac9ac8fe94f4c3d9 "rapdb.transcript" . + . +_:N7d698738e6ff4e5190c60dddc2c31e0e . +_:N628de0cc51d94c8db7f9c4db7929ca33 . +_:N4abe2e05da3e4c8683e99a8bea53bb24 "greengenes" . +_:Ned9647448d964de2b8c85121ad4f09dd . + _:Nd5c3d254d70f4071ba4c305fd5587cc8 . + "https://github.com/linikujp/OGSF" . +_:Nc153e64b00d7408f9ebc1159b1ac1054 . +_:Nd3784db48e3c4f24a3e2691166d7c7e0 "co_340" . + . + "lagonzalezmo@unal.edu.co" . +_:N51602c13754447e8961099ae71eaeac8 "metanetx.compartment" . +_:Na041801c9c7a4b43b87c187f51050469 . + "https://identifiers.org/ncim:$1" . + "https://identifiers.org/genedb:$1" . + "http://www.cropontology.org/ontology/CO_359/Sunflower" . + "false"^^ . + _:Nc25eea459f024e49abc1cfbc32fd6159 . +_:N8e9bdfacf85f48eea0d3a4eb80d90809 . + "Consensus CDS" . + "CHEBI" . +_:Ne76919bead074849ac7560db0fd06a5b . + "https://github.com/evidenceontology/evidenceontology/" . +_:N981d5bc0dae74f9d9dd88787dd763fad "reto" . +_:N800e5de3b3554437a7c28aac7a4d1da0 . +_:N6475dd200d13470bb9a78ed072d14258 . + _:Nd32e69c5cb88482c8177ed48dfc9ba08 . +_:Nd8278c613a8d4fab877c514b0d2fa8b9 . +_:N1f61023441d24f1095ae15b5f7ed339c "phosphopoint.protein" . + "SLM:000000341" . + "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$" . + "false"^^ . + _:N242ff853929243fe8af42e112dc95de6 . + . +_:N8a7ed0f0313e46e69318ba6e2fb4d460 "UniProt" . + "https://identifiers.org/gdsc:$1" . +_:N35b4a0455d894fa3b3a6e0786745f024 . +_:Na47ca26d16064fa0b17050d68f86ff91 "ricegap" . + _:N14bc2b7fd2b448dabb6650eae297b2dc . + _:Ne3997cf237c242438b9ab28759ead683 . + _:Ncba76dc7bb414affaf0d590dee42022b . + "false"^^ . + _:N4faf4cbec11d464d8ef57d266092c2da . + "https://www.uniprot.org/database/" . + _:N8819ed19a5f748888ab5297325bdc00d . + "chebi" . +_:N5591cc074ff34bacb64e5405ad176dcf . + "J.Bard@ed.ac.uk" . + "1" . +_:Nb6d27919d42143d2a3a03f4491826906 . + "None" . +_:Nf12bb0b66bdc4afcb936b1511512ea97 "NONCODEV3" . + "false"^^ . +_:N4540c25309574c53a92b978c339898e6 . + "International repository of Adverse Outcome Pathways." . + "yongqunh@med.umich.edu" . + _:N5a8d8ed34246438ba7404b8c2a645357 . +_:N43c9c690a48c4e658126458424ab7fd4 . +_:Na935e6378d53423581f76a21e73cfb11 . + "false"^^ . +_:N7e079376a40d4bc8a8fab39e6c2a86e2 . + _:N31ab09e6ffef4820beddb631d8a4c00b . +_:N5b3defdf5e5a48e8a1994ce61a66505c . + "^C\\d+$" . + "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML)." . + "Oryzabase Reference" . + "^\\d+$" . +_:N4d1156a1f21d45a9acdd599c927ba33a . +_:Nf82c08ebb61a4b0c8042102cd01a2e99 . + _:Ne3cafdab25b24746b4c79a6af752cc91 . +_:N3291ad41bb72489dba7abb45636d32bb . + "false"^^ . +_:Nd5680130fae24b6d8e476def451bdaa8 "odc.sci" . + _:N2299cd89e2994b0fa12fa676b827e02e . +_:N7c0a5be67b964aeb90114c3d5dc0c0fd . + "GenPept" . +_:N64bc2774be114757af571adf4abe4116 . +_:N84484c37ee2d4e1f817a804a527a0be4 . +_:N76f029a55cdb447891ac2e4b710d2c55 "DDPHENO" . +_:N3246ef4e40f04c57ae143e0a0d4aa1fb . +_:N7333727dd400482f83771d24ac1554a1 . +_:N305ba7ac2c2d4d1098b20af98bd1b526 "hinv.protein" . + . +_:N96ed0b70d7ac4f07a062964bff34cd27 . + "H-InvDb Locus" . + _:N13a0ac307c294ff9950cbd9917f7580f . +_:N0d02b88e5feb46a6a1965f09435fc0eb "pharmgkb.gene" . +_:Ne8c41bc5e23e48e2a4ecc48a55bde7f2 "arxiv" . +_:N365504ed7b3145e99f7cd4d8c7fb6fb3 "vipr" . +_:N5edd1bbc7c214012a0b9604db570e231 . + "https://www.ebi.ac.uk/ols/ontologies/mmusdv/terms?iri=http://purl.obolibrary.org/obo/MMUSDV_$1" . +_:N2b5aefc47a56479f81c4c136d20b089f . +_:N9ac8a3e20d46453d8f50b1222834b6c0 . +_:N3a032929c1df4e47a3d4989bd6f7e028 . +_:Ncaf07e3dc65146b4aa59dc50d9a9adb8 "nasc" . + "false"^^ . + _:N7db542e649bf453bbf3c46f2abdab402 . +_:N8deb04dd936d4b9fb3b41171a23325a8 . +_:Nb4adbfb194134a6dab7f1c8af6b071c6 "GOLD.META" . +_:Nd92db01af3f74fc6aa4219e50aa47eb5 . +_:Na32a557d0f88466da02ef0ee9f4c0ddb . +_:N537a143ec5e343bd8b7e1329336d19e0 "mesh.2012" . +_:Na6b12a3a2e33474b9a0bd73905a7b782 "OBI" . + "Rodent Unidentified Gene-Encoded Large Proteins" . +_:Nc55f978e8984433bb0c4fb9342d4f6a5 . +_:N3385bafddf2a45f6a1a9cae4e5f7d022 . + "http://www.ciliate.org/" . + "false"^^ . + . +_:N97e90f9466d1469db0bc291713d90510 . + "57" . +_:N882541559c8649528baf3b8cf306a0ad . +_:N7b7b52b32ddc4036b3b8d0d6e04cfc0e "ECTO" . +_:N37d27cd8c451497e976fd95175cfe685 . + "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1" . +_:Nf50fbd8255724c19b09939923f406198 "HGNC.SYMBOL" . +_:Nd9aed4821fc94cd88eb6dc89f080300d . + "https://www.ebi.ac.uk/ols/ontologies/covoc/terms?iri=http://purl.obolibrary.org/obo/COVOC_$1" . +_:Nc6e3bf1c6c2e486d80a42a502c257846 . + "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images." . + "false"^^ . + _:N55340fb273184a1c9634d7feaa41b491 . +_:N658302102dbf4549b3bba90e9a3066a9 . +_:N230490758d85400b841195cb7a23a684 . + "TEDDY_0000066" . + "false"^^ . +_:N3f7a1da690f5410c9534a3267e53cf43 . + "https://www.ebi.ac.uk/ols/ontologies/chiro/terms?iri=http://purl.obolibrary.org/obo/CHIRO_$1" . + "title" . + "PK-DB" . + _:N2cc2ea9f6f9648c4ae6a855b5729b902 . +_:N1b11e70fdfe446f2bf2f14b4ab69bca2 "sabiork.reaction" . +_:N515efdf0640b4129acb462fc38ddbeef . + . +_:N13f5a7b5b7834639a87ed7d82091593b . + . +_:Nd074d13c63424f3bb0b0b8cbb607b651 . +_:N8bb84703445a43d2b6649de47ddfde05 "CRO" . + "Homologous Organ Groups" . + _:Nb961d98f60b34acfb5c91aa7dae33a6b . + "https://github.com/geneontology/unipathway" . +_:N21754c88bb2440e1a3b2a2596876536e . +_:N149bfa58f3574ba79a7b6099973a76d7 . + "Aceview Worm" . +_:Ncb83dfb88bb64008ae2a40355fc5382c . +_:N79102903d6984b6e869d233f5faa8f51 . +_:N224045c014a04fcbbad1dd50565f9147 "omit" . + "None" . + "false"^^ . +_:N5a3d9157764c4c50860bf960aec94d1c . + "false"^^ . + "None" . + "false"^^ . +_:N0dbb683f7a04479fa940a59732ff9e79 . +_:N46c2c5b30bcb49d88dbd2fab6b7ee5ca "OBO_REL" . + "T01B6.1" . + "https://identifiers.org/signor:$1" . + "jimhu@tamu.edu" . + "rlwalls2008@gmail.com" . + "https://identifiers.org/ricenetdb.reaction:$1" . + _:N38d68031731b45fc869f30bf863b9369 . + "SSF57615" . + . + "https://identifiers.org/kegg.drug:$1" . +_:Nfee5ecda968348549a5cf7ae1e3cbb57 . +_:N25dfcabf43cf4d898a84416f0a697e30 "massbank" . + _:N1897c76731e548febe6646188fc1699d . + "Common Bean ontology" . + "https://www.ebi.ac.uk/ols/ontologies/zeco/terms?iri=http://purl.obolibrary.org/obo/ZECO_$1" . +_:N63623274a28547de88fafc4ad70595c7 "CMF" . +_:N7308c3182ab54067bb0b8db847c7c477 . + _:Ncb1ccf9d4cea4b4ca91dc6b165eabef7 . + _:Nb381c8f829104436a233803b4f678538 . +_:Nae88c5b2ef314923b4238073336d5ffd . +_:Nd55c236bee914b1d84274e08322cdd54 . +_:N50cc8177dd704c59bffeba0d9bcb13ee . + "^\\d{7}$" . + "^BSU\\d{5}$" . + "Ath_AT1G01030.1" . +_:N31e069f0d87047248a4d0e831762caf9 . +_:N5620ba9896174d31bb34d66aed09fe3f . +_:N99d72295645a43b081d2bd862b138a38 . +_:N45817e3b2f2044868838df91b6c86cc9 "multicellds.collection" . + "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)." . +_:N592ea8f608ab489d9210f37aecbff7f8 "exo" . +_:N7c384fbfb1d04a1eaa1fdda352f0a11d . + "Gazetteer" . + _:N7639323a45cf4d31952ab46597c6d2d4 . + "TrichDB" . +_:N7ab0d869c6ef41179deeb74760deac4d "CL" . +_:N83dccb6a4ea44307bdc69eac0ab24e12 . +_:N35f30bd742b946bfa94f84c8502f0bd9 . + "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources." . + "2005080" . +_:Ne664aab8c2b84b869c9b0913a7e9224e . + _:N317bd62724834b99b7d9179a6b34035d . + "stoeckrt@pcbi.upenn.edu" . +_:Nee85fa4e141b4c05ae222d4d4930658b . +_:N7d698738e6ff4e5190c60dddc2c31e0e . + "true"^^ . +_:Nb0766858001b44369b7a96e7adaef53d . + "Uberon Property" . +_:Nb6b8a5bc05a6476ba063e466d695af2d "P7001" . +_:N9a5be245fc17403fa4655bc23e5a1949 "oci" . +_:Nd1ef5287d43b4735b089f37bfbcbc8c9 "topfind" . + _:Na32a557d0f88466da02ef0ee9f4c0ddb . + "http://hymao.org" . + _:N7d42467cccb94a148f2aa536303c8c6f . + _:N40a5ced526b84858a611f94ac2c19fd2 . +_:N0c6d2fa4df874c1f8ba12536170db208 . +_:Na8f622f95a6641c897f06ca3207119e6 . +_:N86953624bca34ef581b96348b228aefc "PHENOLEXPLORER" . + "Ensembl Plants" . + "Mouse Developmental Anatomy Ontology" . + "0000030" . + "0001290" . +_:Nf35b27a1d543449180b4aac7e8f8c1be "FMA" . +_:N0cf56ae80e0646ecb44539c5094ee18e . +_:Na5b48cbb7b4c479b8cee9ca6ba0330ba "charprot" . +_:N3fe83730d48e4557af8ca597c69f6ead "nmr" . +_:N060850a5f0a74d10a9fc93bbc13267c6 "prov" . + "^\\w{4}$" . +_:Nee375e455aa346818ff573edba18cc1d . + "https://www.ebi.ac.uk/ols/ontologies/co_345/terms?iri=http://purl.obolibrary.org/obo/CO_345_$1" . +_:N60dcad7f378c402c8da98fbc3610aa86 "ma" . + "^MMP\\d+.\\d+$" . +_:N6e0737958b9f43d385ece6a6bbad8079 . +_:N1a4ce384ba984484b674c3e5222cf2eb "PomBase" . + "TTDS00056" . +_:N4319ca1129624791a30168f78221f40b . + "34" . +_:N4a1d1ea8176843d5819b4aad60ba04bf "jcggdb" . +_:N7c2867d684ea49a09daeacd51b28807d "P3519" . + . +_:Nb4956f7720474bedb9d9363bc8535f97 . + "false"^^ . + _:N86c1485056024d7396547a794cddea17 . +_:Ndb9cbfabb93645ef834e33a03d41c767 "TXPO" . + _:N3cc2e970f3fb43df83ebf6a9378e9c63 . + _:Nb822aca4c83a4b70ad49a34d3cefdcbb . + "International Nonproprietary Names" . +_:Na86f9a9bef4c4c0d9ecbb02bbb21bfa8 . +_:N44b9966bcaf8432b91ef2bf052542a2d "RNACENTRAL" . +_:N44f120792a474404b940746620a6c6bb . + . +_:N5b3defdf5e5a48e8a1994ce61a66505c . +_:Ncb97d12d28e54127a0936620d3511f7f . + . + "JRC Data Catalogue" . +_:Nc8906423ccd94543b24637dbff9e3baa "GPCRDB" . +_:N505e89633da94ef4b61b691e705d8477 . +_:N0814801545304cfcaef94d6613788a33 "bioportal" . + _:N6bc6b0eb1c7f4cabb4c682aaf74ab713 . +_:N19a48f9595764b28aed3af11c380e908 . +_:N9d65dbc266294fb4b8011ff3f851e586 "ricenetdb.protein" . +_:N808a59fc699a4343bb7c0814f83963d7 "AEO" . +_:N79693732d92648c286a0e15e2ef76de6 "CHEMSPIDER" . +_:Nc778a49f67714f3abee54c5565d10982 "gcst" . + "GCST000035" . + . + "^\\d+$" . + _:N673ed1b2027b45ff8437adf7b08a0ce0 . +_:N33dcedc900cb498986a25ae8712a9587 . + "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms." . + "^DDB_G\\d+$" . + "None" . +_:Naa62aa6818f24bd4af16b91a3de40465 . + "None" . + "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets." . +_:Nf366671c3afb44f2b97cc6d586b308f5 "ORDO" . + "DragonDB DNA" . + "https://www.uniprot.org/diseases/DI-$1" . + "false"^^ . + . + _:Nce93b8d621e64a7c9f48a21e9ddeb792 . +_:N3cc2e970f3fb43df83ebf6a9378e9c63 "po" . +_:Nfd1b6c4a1059450cafb066a57c836b09 "bgee.organ" . +_:Nc848288e34894435818273852c507d0d . + "https://identifiers.org/odam:$1" . +_:N592777f3f0ab4ae0918e5d9cedfc8b80 . + "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)." . + _:N2bd08cc7f2da4c4f864bcc070fe22855 . +_:N7658294214fc4051b05ad5d5c11d2454 . + "Eukaryotic Linear Motif Resource" . + _:Naee6ad67a64a4d8dbc7cc569f247b349 . +_:Nc11a35c85ea64cc8b27e282d6d0689fc "RS" . + "false"^^ . +_:N12873d1fefa14e18aaa04c197c5e25f4 . + _:Ne13ae73a4e754aaab4d5162ebe22f2d1 . +_:Nc3c4ffc882a143d29c9457ae75461ed4 . + _:N51d7311e9d3149d29c390426485d0abe . +_:Nfef5796faf964fecb01d5059838f3ff4 "P2106" . +_:Nb4af43fc406d4536b7054b13c61d0bfc . + "ProtClustDB" . + _:N319a44f69562452ab8ef81d0e2053292 . +_:N27852c2927f045309807407acf4a6e4f . +_:Ne293cf9d442145209024c8ef08357646 . +_:Nf66563d342c24187bdf9af887675e700 "P665" . + "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. " . + "None" . + "^\\w+\\_\\w+$" . +_:N701a88fb0cb54790bec1d15af99a2384 . + "^RO_\\d{7}$" . +_:Nd849113afde645248d41158576bb41f0 . + "https://identifiers.org/door:$1" . +_:Nb07ff3e7597e401eb8c7c81e0e7fc5a1 . +_:N32d3476e6fdf48979d1ea4b5de954151 . + "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS." . + _:Nf35d168f193c4a37b75abfb5f7d767d0 . + "GlyTouCan" . +_:N7626eea458c442239dc7df618ca5c645 "PINA" . +_:N831fab1deb604b208bc32f85f65d8f87 . +_:N35a1dccfaae84e46924cc885040a2c4e . + "None" . + "false"^^ . +_:N35da353cf0504adfbdd15bb1e28a6f02 "OMO" . +_:N97543da0a3994c94b8d3de9cd7c5ce5a . +_:Nef4e4f1daa5a42519ee95b2f05239a15 . + _:Nb9e1130524a7437496f06068c42d61d0 . +_:N5b40088bb4c84b159df3e269fe2bb76b . + _:N06a9b2e521c841fcb79cc3b04625453f . +_:Na5fd9900a87a490e8e22efc24b6ea48c . +_:Nd45a6d688de24e94896e0b082f10e365 . + "https://www.ebi.ac.uk/ols/ontologies/mfmo/terms?iri=http://purl.obolibrary.org/obo/MFMO_$1" . + _:N9be83a99530440689dc20222cc3137d3 . +_:Nbad88d6a0d4141638320792d356cdb1f "dictybase.gene" . +_:Nb2918255b714408899a810d2999b4d1d . +_:N188daae7c3da47879d9345874c6381f2 . + "None" . + "None" . + "8cf84adb-b4db-4807-ac98-0004247c35df" . +_:N54f3402d9ad1426485a4e535eb6cdf98 . +_:Ncd534b92355140fd895f6cf2126ef60b "METANETX.COMPARTMENT" . + _:N44b13f16f5aa4dc783e1d4cbaa77e165 . +_:N6fcadfb2fc5d4ae99bdc033a0d4450b8 . + "None" . +_:Nbae3f946f2434e309dc600ffcb974186 . + "false"^^ . +_:N5252f51867e14d799a324047507ab116 . + _:N41b49b2fdd6d4716a5a81a9ed4cf9b71 . + "None" . +_:Na2100f6850e84100b79df6e7d2649fc1 . + . +_:Nb4a2e4f6f8d3479db2ca2b6df00cb379 . +_:N0e12672811fb4e589033a49b062f56a9 . + "2679240" . + _:N1d7048f17ede4b5ba4318dec3ad78df9 . +_:N81fa2428bda3448b895115d1d3974b84 "ensembl.protist" . + . + "Neural ElectroMagnetic Ontology" . + . +_:Nd7af4c542a2a4a82b18efc93a4bc1d4d "begdb" . +_:N789af802fe314b03b5be160efcf68d0d . +_:N848215682e444edd9d30fd15b9036539 . +_:N41ace234ffe2411c8bf6c087276a0d0b "RRID" . + "https://identifiers.org/csa:$1" . +_:N8411e26602a74c909df525e9fdc1bf80 . +_:N637ba7877ea84cb6a79517357caa5ca6 "PLANTTFDB" . +_:N7e087a58d1a8477bad9d7b86fa538da0 . +_:N91b61392e0464dc48453a09c55fc3d29 "P3406" . +_:Ne26f53d90228476ea5ed8cf83c381f8d . +_:Ne3997cf237c242438b9ab28759ead683 "MIPMOD" . +_:Nadbb221a7b25496f982d048e5d887b4c "CDNO" . + _:N3b557a620bfb4681b8038a34ee623eae . + "^C\\d+$" . + . + . +_:N25c7f052586b48e9b33b99c19deb7590 "mdm" . + _:N390523c70a214560b15f42cdf612a585 . +_:N5131b01dad7345f3ae0a2019463051b6 . + . + "false"^^ . + "^\\d{7}$" . +_:N846be59b67e24a69a62c4fa020966359 . +_:N031cbaba722347c387557f19f8006673 . + "https://identifiers.org/dpv:$1" . + _:N2dca6345da8143568c84744f4918eea9 . +_:Ne145950fa2aa45b38647a9ef2f2adbe5 . + _:N41e4c000c46c49368ce1d19e9ea20d6e . + _:Nc4894a582f0e4401bc4160cb75add960 . + . +_:Na60bc7f9c104447b8209f39eeff20392 . +_:N0cf56ae80e0646ecb44539c5094ee18e "WBls" . +_:N26b6bcbd35544a83a91e19078b3f2298 . + . +_:Ncb1ccf9d4cea4b4ca91dc6b165eabef7 . + "false"^^ . + "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations." . +_:N7aba300aea5b49beb5af9dc208496ce9 . +_:N108640097e3a40a7bba9259c10972a7a "dictyBase" . + "None" . + "None" . +_:N50f216c0096045db92f099db7638a9a6 . + "Minimal Information About Anatomy ontology" . + "ala" . +_:Ne85f8ee935324c76bb4314960782df7d . +_:N250373cf4f67409b9f3dc8bef6f9e931 "topdb" . +_:N2acae0a97d594b03bdee5cc83ceb7c39 . + _:N16784055d4f0408dabfc23308bfddabc . + _:Nfe75c3fac6ba43b7bec49d4655d12a3d . +_:N7fec856117fb4294b0017f1cb89bac32 . + . +_:Ned01603c34294e689fceb23847d85619 . + "^(\\w+)?\\d+$" . + _:N7f48290722af4170b0e004e5cc89de32 . + "Cassava ontology" . + . +_:N372eccb23ea144b1a24154b889f74a4e . + _:Nad40ac724b394e9597d3d4f2079ce9ca . +_:Ndd7810b6d6874c8caea6bc9ffc98dd06 . +_:Nda64ad3fa41049ea883e5b2db5cb4559 . +_:N40718bec5b2d4dcea9479edba9b1a26f . + "9" . + _:N2171494281d940b189f9173d888ac7b5 . + "0000001" . +_:N0c627110bf0a4d58b03b4cdd3b1127b8 "panther.pathway" . + _:Nc4dd80a36e214f148cbe353bd5047ffb . +_:N5141597c30e9445187619b40776aaa75 "dictyBase" . +_:N8a62001aff9544138fa1251f5eba322f . + "https://lincs.hms.harvard.edu/db/sm/$1" . + _:Nf7f1b7e8a914408687303a804b8c745f . +_:N522c4816083a4b169781ab723e4906d8 . +_:Ne4c0c7a02be24cb0b3625787c3e75965 . +_:N455b228a47ef4fe1b27b1b36ff41ecd4 . +_:Nb392b0426cfa41d882de1ced8c6d87ca . +_:N53f26baa9bca49569e20d07fa4401455 . + "^DOID:\\d+$" . +_:N6f08ce6ed1e348de98162382ed230dac . + _:N9fd6f3fc85e744d8a247ea326087e160 . + "https://identifiers.org/cath.superfamily:$1" . + "MetaNetX reaction" . +_:N22ba4ed15345422ca502294a5c09b563 . +_:N79627d04fc054db195c347e9acc6e1fd . + "None" . + "true"^^ . + "UPI000000000A" . + "https://github.com/bio-ontology-research-group/unit-ontology" . + _:N310a14bb296740e1a0a48f46faf0a2d5 . +_:Nb8e1a056e7fc4ccb82a54586b1338f56 . + _:Nf2c239f7e4164a2b80e7015feff4d352 . + _:N906a9573a32a41928a69567d7bf94f2a . + "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources" . + "YMDB00001" . +_:Na718214d4c3e4d70a253c8497f9668c2 "bigg.reaction" . + _:Ned21d29a8997441aa7cff593e853a6ad . +_:N1863e15044a54767809e9a5b0b68b266 "MIRO" . +_:N35957830ff214770a7298df7b944cf2e . + _:N87b0e1677b964bceb0b36ee11cd19e82 . + _:N0743eb345dd94a2b97c8a76e2195c97c . +_:Nfb67ce57a0f44f54b1e10500bfae963e . + "https://www.ebi.ac.uk/ols/ontologies/idomal/terms?iri=http://purl.obolibrary.org/obo/IDOMAL_$1" . + "false"^^ . +_:Nb74cec01d13e4169afd359ffa52ee0fa . +_:Naa53dcd0832549d8a9191e684686f397 "APOLLO_SV" . + _:N6d2a02f923b247fa85f6bcfb0fcec18f . + "None" . + _:N5620ba9896174d31bb34d66aed09fe3f . + "false"^^ . + _:Nf1b9402988de4c75944dfe50a4c4cabb . + "https://identifiers.org/proteomicsdb.protein:$1" . + "https://github.com/Display-Lab/psdo" . + . + "http://purl.obolibrary.org/obo/fypo.obo" . + "^\\d+$" . +_:N3de3ff078c054ce7a6cacbba245a5200 . + _:N02b71cd77b754dc2a88ecb8d37bc776f . + _:N45dfa480632e49f395d9202e60a1650c . +_:N6771101abe0244b2a2b972a500ff4849 . + "https://identifiers.org/metacyc.compound:$1" . +_:N60c6d1686ead4178bb552a11fc890949 . + "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms." . +_:Nb313682f943d4b84a9b2e65bf297a7e2 . + . + "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts." . +_:N4a7bf760b6db4d1ba3355fa3fa5ae99d . + "Ontology of Arthropod Circulatory Systems" . +_:N6b943f2c7ee942d3ad50bc555fa485a9 . +_:N15a465d5f82642b1847a855d886e7b78 . +_:Nac8917df455a4c6f9210cb84ddc45743 . + "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs." . + _:N190da5d0c364409b9e011466fbd8c1cd . +_:N4d1156a1f21d45a9acdd599c927ba33a "MAT" . + "https://identifiers.org/imgt.ligm:$1" . + "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction \u2014 as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules." . + "^\\w+" . +_:Nd86c77ebeddf450d80d7e3afe63512a1 . + "ProteomicsDB Peptide" . + "https://github.com/obophenotype/zebrafish-phenotype-ontology" . +_:Ne1f63c5865d6433ea9bac7c4f1c6c481 . + _:N242840184b83435fb18a2689dbc145f6 . + "AICARTRANSIMPCYCLO-CPLX" . + "BacMap Map" . +_:Ne998f0e823ed4f81a98b7b55dc6e8b49 "paxdb.organism" . +_:Nf778f2447dbb479486b852c7faf6f275 . + "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata." . +_:N3d614d4804384a46a9ae00a3b8780c20 . +_:Ne69cf62b7aaf4843b421cb2cecf3b1d2 "SGN" . +_:N124cf31cf4a44d6b93af688ed2884c4f . + . + "virsi1909" . +_:N7ec6e0348ad640bf8278c48eb44aa651 . + "false"^^ . +_:Nbeffd964b15e49d99ba68903a410160e . +_:Na4d9b892b27f4ed7a5a89de7106b6063 . + "false"^^ . +_:Nf3136ccec9b04c91bf969e25e2f67994 . + "^MNEST\\d+$" . + "false"^^ . +_:N11373f57eb4940f9b4c60d20edec0b14 "ricenetdb.gene" . + "^(Q|P)\\d+$" . + _:Nf70a267aad174f9f8dfe8f659f5620dd . + "DailyMed" . + "2.16.840" . + . +_:Ncc6d3760b3dd4100bd5a548d7d6f315b "ICD" . + "Zebrafish developmental stages ontology" . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_$1" . + "Environment Ontology for Livestock" . + "https://identifiers.org/ecogene:$1" . +_:Nb62fc8a0d8a149018ec3efec57f3bcbe . + . +_:N3a5321d77d334ca7b2947ed66e01f7e6 "sheepqtldb" . + . + . + "https://www.ebi.ac.uk/ols/ontologies/upheno/terms?iri=http://purl.obolibrary.org/obo/UPHENO_$1" . + "jupp@ebi.ac.uk" . +_:Nd8a1ec81192247ab8f26499bc922bdf2 . +_:Nfe75c3fac6ba43b7bec49d4655d12a3d . + _:Nb392b0426cfa41d882de1ced8c6d87ca . +_:N3f755840ee874912888758268a1873ed "dictyBase" . + _:N9d42c58ecfeb4fb088a60a5f4086e26e . + _:Ndfb8b0672c6948b08f514fe7cde4901f . + "None" . +_:N51298b78bf604154a89e8932f7b1dc3c "STATO" . +_:Ndde5d0d8789d483aba5fcb0961d3e444 . + "None" . +_:N3d159747ec5540e2beb08dc1ae4f0bf2 . +_:N4d0eff72a5a941f6aaedb718990f5edc . +_:N9a8e93e0882d483dbf160e630410e766 . + _:N84f89c86a61849f6b617158c8940ddd1 . +_:N6f2ac14b844f43469270fa8b2fcfaa93 . +_:N5b5dd646199042e7a915caf5d428990b . + "^\\d+$" . +_:Ne380742faa724d79ab781e2bedb22417 "dicom" . + "^DDB\\d+$" . +_:Nf70925baf06540a1931af8a283077356 . +_:N53627565aee547febdccf3c44b09694f "pmp" . + . + _:N4c72a7db43ff4e2cbf37c3b25198892a . +_:Nca53eb92dd7c4800815ff81bf72173ea "SGN" . + "None" . + . +_:N90bc94e42b974917bfe4fbf08a37c220 "MFMO" . +_:N15b0ab76e4404fc5a4585eb9152a0cec . + "MMP3888430" . + _:N0210baeaa3a14abc8adcd29b8cf8031f . + "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed." . + _:N4feb9ec1379b4809ae9f15e68c602d87 . + _:N24d6e1947a37488ea88d10bcc667553c . + _:Na5b4417819bb4c7b9fe33d2e76ab9ef2 . + "E-cyanobacterium Experimental Data" . +_:Nb6d27919d42143d2a3a03f4491826906 . + _:Nb6baaf1a91144a9a8f33e1d79fc939bc . +_:Ncea739ad97a44702859931fe08b93cf6 . +_:N43c9c690a48c4e658126458424ab7fd4 . + "PlasmoDB Plasmodium Genome Resource" . +_:Nd4efcb86e90e42768ba341a72dad3289 "VSAO" . + "false"^^ . + . +_:N7c43fcb7f154490cb0495bc410e2baef . + _:N4e33bec2935245e49ba76a0f40376907 . +_:Nd588fc77e94648a086ef4e5724b37f0f . +_:N11b1c25da383430c88c731293ed4273c "CDD" . + _:Nc1f900adad0649d1a915c5da5f2236b8 . +_:N7915c3b0cc3c4c79a2d079a8b98d0ffc "BUGBASE.PROTOCOL" . + "Dublin Core Types" . + "Cube db" . + _:Nd56a39b6e8b64646a56d00858863ca64 . + _:Naac3a8c6f0ca4ee9ad40730b54f97080 . +_:Na325059a1bea497f911bdc0d49e347fb . + "https://github.com/obophenotype/caro/raw/master/src/ontology/caro.owl" . + "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease." . + "http://purl.obolibrary.org/obo/tads.obo" . + . +_:N38e64c41920e4159ab87e0bc28a1a430 . + _:Nb5fa84b3e1c1458195aee9d749b2f41a . + "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB." . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/tgma/terms?iri=http://purl.obolibrary.org/obo/TGMA_$1" . + "^CH_\\d+$" . +_:Nded113b7b9344ff5812d3aca79d5c320 . +_:Nb1a31193f6594c5cb036977036931d54 . + "false"^^ . +_:N81506de719a34a85b4aecccc46696ca4 . +_:N2e7dcac0ddff469989cb0cb8eed6a744 . +_:Nd09bce1b99064c489237ba0ae1e539c1 . +_:Nc1e87ec9e0d8472ebc93f2cc48d0719b . +_:Nff84e3a4e4a34a7ba6f74221bb67be26 "brenda" . + "https://identifiers.org/doqcs.pathway:$1" . +_:N8deb04dd936d4b9fb3b41171a23325a8 "P815" . +_:N839f5b9f6e4d451eaf1ef9dafed7bfc0 . + "http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology" . +_:N1bea2f090c09451188a62e4251b8af4d . +_:N1897871aea424a27b560107be7cbd992 "clinicaltrials" . + . + _:N1ba5f287bf214bf3953352f3356a3094 . + "false"^^ . +_:Nd0da5d91b8e94cee8ba5fec4962e2436 "IMGT/HLA" . + "enviPath" . + _:N7587e5d1dd104a5ab60d3d3ab253006a . + _:Na9b0ca190dc24b04b5d90e0ef28c65c8 . +_:N057de2c7e82f4cb8bbdb0b4afae0f631 . + "http://www.drugbank.ca" . + _:N32d3476e6fdf48979d1ea4b5de954151 . +_:Nfaafd64430884b9a8e4fb34878b458a3 "swo" . + "false"^^ . +_:N97e90f9466d1469db0bc291713d90510 . +_:Nfbf6ff83ae2b4119870b66ebf4a48c09 . + "None" . + "None" . +_:N73656ba2f59a4db983de8ce6b0816821 . + "Plant Trait Ontology" . + "false"^^ . + "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database." . + "^\\w+$" . +_:N3b1f353c3e03402aa0ac8cb4c96dc153 "mmmp:biomaps" . + _:N0ff15e29cdd74809a823b11a95c704f1 . +_:N733a773d8fc943efa28c07e6dec2d923 . + _:N5a1ca115ce0347669030c5f631f04de3 . + "MGnify Sample" . + "https://identifiers.org/ega.dataset:$1" . + "https://www.ebi.ac.uk/ols/ontologies/txpo/terms?iri=http://purl.obolibrary.org/obo/TXPO_$1" . + "000000024" . +_:Nc2588b3f24994de783b1538e86102fee . + _:Nf5e729df716849a7b307ea7f091a6869 . + _:Nb2918255b714408899a810d2999b4d1d . + "10595" . + "false"^^ . +_:Ne72300ff0a2e4097b7a78fdd194d6813 . +_:N3f7a1da690f5410c9534a3267e53cf43 . + "None" . +_:N83bb299c24b94eb19b289c9e8582c092 . +_:N4e6ab83244aa41ceb5181fe1bfffd0c0 "kegg.genes" . + "laml_tcga_pub" . + "https://www.ncbi.nlm.nih.gov/pmc/" . + "https://identifiers.org/viralzone:$1" . + "InChI" . + _:Nfe0e662e1c00431eae76bbdea7b0ea43 . +_:Nef961de87487406f8789c84d0cd7e574 "NAPDI" . + "63189" . +_:Nffb65aab7cff46049bcb3845b7e54a32 . + _:N218a8f8e47264c5db35e68df146738ab . +_:N3cd0c2ec07a446f5899a1af27c494ebe . +_:N316e130d0ba04dada83e1847b32c3364 "P8656" . +_:N78dc477b14514923861def6b27bd6aed "agro" . + "cl3603" . + "http://research.amnh.org/atol/files/" . +_:N8b6f4999335f4680827b8c4a14ffde62 . + "https://rnacentral.org" . + "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature." . +_:N79d06e6ce47f49a097bfef701ad40203 "metacyc.reaction" . +_:N840f7144e5c44117b168134a42a3a988 . + "InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. " . + _:N39334e80cb4343119932fb162b45ff65 . + _:N4baa2608862c4b79a6ef4369fd011884 . + . + "QJ51RV02" . +_:N0dbb683f7a04479fa940a59732ff9e79 . +_:N3586e4eea34149a2b6ee6b921f2014c6 . + _:Nfa7327d5fec6470eb1d5867dd9005bdc . + _:Nab25b703fdcb43f596dc22cb65347ad0 . + "http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/" . + . +_:Nf4e1239787c1428c8f323c8155b911b5 . + "THE1B" . +_:Na62bc2340fcf45c8acc79a7d35dbf125 "IDOMAL" . + . + "false"^^ . +_:Na7b90f5c91d84eda98405a4509c32360 . + _:N6277cc43fce94764bab51dfcc66d4b0d . +_:N35dd8df0ac5f4f0b860b1d6f4fb118bf . + _:N7f5a30b414964015809a1dff862fff1e . +_:Naae20bd7d1de499ba003001c306fb7a2 . + _:Ndab967e586d74964b4fd1918fbd470fd . +_:N50cc8177dd704c59bffeba0d9bcb13ee . +_:N2cc2ea9f6f9648c4ae6a855b5729b902 . + "derivatives%2Fthiocyclam%20hydrochloride" . + _:N63623274a28547de88fafc4ad70595c7 . +_:Nc1413a4343954094ab6ad1e85af2c50b . +_:N98d9751741d14917b3d7fe23e9746a73 . +_:Ne141d76c648e4e42813d0349137f62d4 . + "Gramene Growth Stage Ontology" . + _:Nee8839f8d1054265a59cd9a209895ce4 . +_:N1f2125934d7047eeb749daff7b026706 "VFDB.GENUS" . + "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data." . + . + . + "NIA Mouse cDNA Project" . +_:Ncbc378964c284b64b04379b7d2a4f250 . +_:N3a65681a124c419ba1724c760b113980 . + "https://sitem.herts.ac.uk/aeru/bpdb/index.htm" . + "None" . +_:Na771e336556f4b2fb5eb4630a9424736 . + "https://github.com/obcs/obcs" . +_:Nf76381c6d0374fe097a56708ae07a986 "MSigDB" . + _:Na99f85bb64db40f48ec36fe170f39cdd . + . + "false"^^ . +_:N2f1e61249cd440019e1481b89c1f50d8 . + "false"^^ . + _:Nbf3080bb6ad143e18c5bc214bda48c86 . + . +_:N47b1fab38204459284bed1caf5eb8469 "vfb" . + _:Nc1e87ec9e0d8472ebc93f2cc48d0719b . +_:N83ec9068c56c446f95d7792495a3cd9b . + "HUGO Gene Nomenclature Committee" . + "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc." . + "https://www.ncbi.nlm.nih.gov/pcsubstance" . + "false"^^ . + "https://biomodels.net/vocab/idot.rdf#$1" . +_:N07e2969bb90745f5969dc9f8ea47e453 . + _:N48f25eaed1ec4987a5f7b06d41bc115c . + "This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE." . + "FuncBase Human" . + "https://identifiers.org/ligandexpo:$1" . + _:N255b9f496e7f49b290ecd346c2149a60 . +_:N6eabb81ff742437bb362085121372aac "SBO" . + "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature." . + "^[A-Z_a-z]+$" . +_:N0c7528299ecb4d3e85531f2ff754b34b . + "GXA Gene" . +_:Nc7621a43627f4ff6ba338a5573019cf7 . + . +_:N44f120792a474404b940746620a6c6bb . + "1784" . +_:N4ad3ed05adad4d9290ca20f5dbfbb97d . + "cjmungall@lbl.gov" . +_:N64979aa921ce411a933b863a6b537897 . + "false"^^ . +_:N909cf920cb5a4bd4a382c80868ff31bb . + _:N727421d5da524dfeb480c12a7d29e8db . +_:Nc62deebe6ace4920ab7fba6581377589 . + _:N617c2e4f9c7742cbb5b2ec5911bafec8 . +_:Ncaa8161738004584ae77962f7ecf65e4 . + _:Nc7903b5546e0452da031f8e946a232ea . + _:Nbd80b112bffb48d5b2d687dc5db2fe95 . + "G77500AY" . +_:N87d1c357772b428a8dea1597afa531c4 . + "https://identifiers.org/oma.protein:$1" . +_:N15b2bcfee70344738346916eb0cae76e "GeneDB" . + "false"^^ . +_:Nff62c96685914ecd9d0794d843135f99 "PROSITE" . +_:N1548722f7e2744d5bcda937ccfc28309 "NEMO" . + "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus." . +_:N19a48f9595764b28aed3af11c380e908 . + "https://identifiers.org/cldb:$1" . + "false"^^ . +_:N05f6d331fc014c70ab92098693faca1a . +_:N6d01021747ae4c73a5688fda44f4f55e "BioCyc" . + . + _:N6c457077e66348b3a57a181fdc0fb0b0 . + "false"^^ . + "https://identifiers.org/conoserver:$1" . +_:Nf9a2464eccda4183b23224ad0ec43608 . +_:N0ded47946a544e9aa086c52113b728de . +_:N8ad4af909dde4fd38b42e59b8e44f009 . +_:N7a26b0dde44c4a01a35029dbd29c0385 . +_:N64979aa921ce411a933b863a6b537897 "PomBase" . + "None" . + "^GLDS-\\d+$" . +_:N4d349fd5393642cc9cb06cd449a5898e . +_:N0c840f41d6434c50a1cf4c7caab8b139 "TGD" . +_:N96df64d8a6cd4c71ba7aa5eefee82fe1 . + "None" . + "Wikidata Property" . +_:N55358003352e42f4b0440ff38c0d23ab "ligandexpo" . + . +_:N30c70cc8b1764735b0f8660584468e35 . + _:N12873d1fefa14e18aaa04c197c5e25f4 . + _:Nc78b49656b02413489fb6ab0e2b2817c . + "Clytia hemisphaerica Development and Anatomy Ontology" . + "jreecy@iastate.edu" . +_:N1d33f3c858f1409b9c752b81932992ef . +_:N5a42d254f58b4b3e885d42e7296140d2 "worfdb" . + "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures." . +_:N03f4ae15c09947f195d95176974d2004 "CRYOEM" . +_:N936215f1111b45ffb7debc03f20f6aad . +_:N2325daad1d7f4f65a8036720b3362fcf . +_:N190da5d0c364409b9e011466fbd8c1cd . + "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein." . + _:N5e560ed1223f42d5903d1c2a91dc3c29 . + "^T3\\d+$" . + "false"^^ . +_:N79cced6c5fde41c087a395bb63c4a246 . +_:N457063761f1c49e7b2aab02b2c1d7493 "P715" . + "^P\\d{5}$" . + _:Ne56c0dce8aea4948b29cd811236f6b3b . + . + "false"^^ . +_:N4113d057a87f4454846a017a11236278 . +_:Nf8832a4e981c402db43b2df254068d2c . +_:N35a1dccfaae84e46924cc885040a2c4e . + "https://identifiers.org/corum:$1" . +_:N59c2caec69b947628900e847a437ef3f . + "G24361QY" . + "false"^^ . +_:N50b4578135e541599ab0fd660b003eb9 "CARO" . +_:Ndd8265a488dd4993a5a32f66b8ee6445 . + "false"^^ . + "None" . +_:N54f3402d9ad1426485a4e535eb6cdf98 . + "https://identifiers.org/wb:$1" . + "^c\\d+$" . +_:N72306aebbcab4125b79c078ec85f822e "vario" . + "^\\d+$" . + "Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016" . + "false"^^ . +_:N8e9bdfacf85f48eea0d3a4eb80d90809 "PROTEOMICSDB.PROTEIN" . + "https://identifiers.org/ECO:$1" . + _:Nc83abefd57b84ac58f5708610fce3d87 . + _:N804635d738084f439a1fb3796c0963d5 . +_:Nfb71b28188a446ab9b80b12fa2c77eac "genefarm" . + _:N9b495c2d5e8144bda92dfa7aef7d6ffc . + _:N9ac8a3e20d46453d8f50b1222834b6c0 . + _:Ne2ea0e7170444c249768bd0ade93cc48 . + _:N3df5ba5ed890426a9e9dff58105a84c5 . + _:N5b74197f93f04a03afa0ba71726fa26d . + "https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo" . + . +_:N945b9472bcf34f6b8d9500b340c0b5e2 . +_:N5afde3d0ae2c4feea9590b40de78e0cc . +_:Nc57bf558223342329242414f4f47860e "ecogene" . +_:N834877a0b3cd49798da47b540665245a "p3db.protein" . +_:N789af802fe314b03b5be160efcf68d0d . + _:Nd04d0d87761c4c4181a5b3d58ebaf355 . +_:Ne26dec5ea2d04a29be75e76e1894782c "BGEE.FAMILY" . +_:Nc0f48ce744b34fb2a4ffc9f601f110bd . +_:N44b6ee31bf1d4313a6c0cc9e19a59aa7 . + "https://github.com/rsc-ontologies/rsc-cmo" . +_:N9955b7b5cfe8458f96e70207f051240f . + _:N29db90c757fe486ca5f9a41ba9f12cf6 . +_:N0c627110bf0a4d58b03b4cdd3b1127b8 . + . + "The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes." . +_:Nd9aed4821fc94cd88eb6dc89f080300d . + "None" . + "https://identifiers.org/SBO:$1" . + "^\\d{7}$" . + _:Nd4670f4d3e914ef9b3842ff61c1f8914 . + "None" . +_:N031cbaba722347c387557f19f8006673 . + "https://identifiers.org/nmrshiftdb2:$1" . + "grid.225360.0" . +_:N8b795d19992b4ab0a8fe7f92907a10e4 "ZEA" . +_:N6f145783f88441ebaddd4758e9377e18 . +_:N60e7207a03ef4af2bd6742dc3613229a . + "(^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$)|(^REACT_\\d+(\\.\\d+)?$)" . + "https://identifiers.org/funcbase.human:$1" . + _:N02f0f0c0290f41df94fa06e89978fdac . + "Contributor Role Ontology" . + "https://identifiers.org/MS:$1" . + "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$" . + _:Nad122a58924f48b5bf192414cba0d2d9 . + _:N98800fd6a425485094b1fc755d02794d . +_:N22244989c630447d9fea929e53f9bdc5 . +_:Nac5fc55ead0b4b52a4ba5634116a1adc . + _:Nc3ca6ab2f76c4e93bdc3c6a1953e1c06 . +_:N583840c8e9fe44b589c1bbb9a75037b1 "PECO" . + "^[A-Za-z_0-9]+$" . + "false"^^ . +_:N09dcabf190bc45b98a7c996229f60a49 . + "MicrosporidiaDB" . +_:N60c6d1686ead4178bb552a11fc890949 "OPM" . +_:N843d74558c2f4dafb5e0354613e11923 "sabiork.reaction" . +_:N544952f6e754449db545da3e30d063c9 . +_:N982406cb66c1460698b1174fd99d031c . +_:Nc2fbabb480c14aa1857123b74bc9d189 "STATO" . + "false"^^ . + "Fission Yeast Phenotype Ontology" . + "https://identifiers.org/wikidata:$1" . +_:N187711bb1f0e40dd91cda5a2836fce98 . +_:N766c1557f3c14775ba557ca92c663a12 . +_:N96714499a7e04c0f8fc8a8ae254dc5f5 "euclinicaltrials" . + "^[0-9]*$" . +_:Nc03711e412d147de97b14b81db9a329a . +_:N0752d4e8c2614fb6ad634c5b9759bdf9 . + "IUPHAR family" . + _:N86953624bca34ef581b96348b228aefc . +_:N1d4a248ceaa24e83a6d9d3a98c492357 . +_:N354332e3a9bb4493943aacd477f07956 . +_:Nfe08d17af3ab4d0981da9e7da14ec4ca "umbbd.rule" . + _:N826957724ab44793bf01709efcb3abde . +_:Nd264de8f58274576890249203bb87e26 "DTO" . + "false"^^ . + _:Nd9f28dc9542d407c931e6459f926e797 . + _:N5415db695e3f4628b40a2edd4ba79ba2 . +_:N66fd7a4f63a347a19e93038411bd6527 "p3db.site" . + "iRefWeb" . +_:N2c74e6536a7640da9829a1db86b3561c . + "false"^^ . + "None" . +_:N829f24f4774a4f79b04dd982107e5f0e . + _:Nd073311cf4454cd696b551668b987a1e . + _:Ncb16fad83be449218464ecddbbd11f78 . + "https://identifiers.org/piroplasma:$1" . +_:N50ce5a5b2a754c029b894e69b83db512 . + _:N333b3190fc2041a7a2e0d89532782d09 . + "false"^^ . + "false"^^ . +_:N9c441606434344d0aaa4057cec0155a2 "BGEE.ORGAN" . +_:N2a808f990d2248fe80b94d63c612bd9e . + "BRIP1" . + "MBrochhausen@uams.edu" . +_:N95646a2e675e49b1825abb327333dd7b . +_:N628de0cc51d94c8db7f9c4db7929ca33 "HINV.TRANSCRIPT" . + "^[A-Z0-9]+$" . +_:Nbb1e92a438e549d2850dee2b56fa82d6 . + "0000210" . + _:Nec5d35256b0744948e66a9964c550fe3 . +_:Nd8a1afbffd9a4d56b8e9d61e2e028675 "PMID" . + "rs11603840" . +_:Nb74cec01d13e4169afd359ffa52ee0fa . +_:Nd44f9958fa27402a84e1fb08155ebff3 . + "https://identifiers.org/kegg.disease:$1" . + "GOLD metadata" . + "true"^^ . +_:N5b5dd646199042e7a915caf5d428990b "SAO" . + "false"^^ . +_:Nb8ed4b26225547869cd8e00e90427a7d "seed" . + _:N161e5d6596634b5790364bafab05b95f . + "https://www.ebi.ac.uk/ols/ontologies/ncro/terms?iri=http://purl.obolibrary.org/obo/NCRO_$1" . + "spike00001" . + "false"^^ . +_:Nddba05267b594856873311d52b838059 "odor" . + . + "JCGG-STR008690" . + "https://www.ebi.ac.uk/ols/ontologies/co_366/terms?iri=http://purl.obolibrary.org/obo/CO_366_$1" . + _:N0deb866b165e4d9aa67ed845f5dd4d2b . + _:N9f42df6e04df4b2bb40de916c01dda78 . + _:N9194679d2a764a5c8855251fa503a0cc . + "batchelorc@rsc.org" . + "None" . + _:N104d1ebd3b6640ecadab829f70becd64 . +_:N46d6f476e520492fbf099bdacf538e9a "Phytozome" . + . + "http://www.uniprot.org" . +_:N65b8dcb490f3427caebc8f3f01dfb1c0 "PASS2" . + . +_:Nd2c15222fefc42a8bc40bdb34c85b1f8 . + "None" . +_:N76c7b663427943f9abc4670955b376a2 "OPL" . +_:N77045af58cdf47bb91a5c72303e6fe9d . +_:N68764d5f499a4ba0bf61d8db5a32a2c2 . +_:N48358444510c4641bb66d3246ae30b9b . + _:Nf9a2464eccda4183b23224ad0ec43608 . + _:N9ec7a4d689a1478ba09792e2cf35cc77 . +_:N188c1bf636304dceb8060ca89aac0d41 . +_:N1137cffd29aa453ea2c4a95c747317a5 "OMIA" . + "GPIb_IX_V" . + "Ontology for genetic interval" . + "Pfam database of protein families" . + "false"^^ . +_:N061a0e53917e4bc6be3524e00b8a7bc0 . + "https://identifiers.org/intact:$1" . +_:N3ccf71a3353f4ecb992ee3c6216b5dbd "DOQCS.PATHWAY" . +_:Nc22e4a7a8667439a8de989a01f484a71 . + _:N7268d2e7f64842e18f786249ff12a21f . + "false"^^ . + _:Na3fc6b806a004ba7913e387ffabb4567 . + "None" . +_:N48aaa3e52ad04e07b4d3638504fcfb57 . + _:Nb74cec01d13e4169afd359ffa52ee0fa . + _:N51cf4fc7cfda46acaab75ead6f264fe9 . +_:N4875c9bb414d4e0fa0dbf590a9fd7d6d . + . +_:N7639323a45cf4d31952ab46597c6d2d4 . + _:N19a7cb2639b24536bdae5f4756c534cb . + "https://identifiers.org/MGI:$1" . +_:Nef1081ecca67416ea668afead073e068 "PomBase" . + "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$" . +_:Ndc5f848b7f4e4156a2ba11d86b4120fc . +_:N92372427453e4fa1be60121054a5a95d . +_:Nf9a2464eccda4183b23224ad0ec43608 "mgnify.samp" . +_:Nd17fdf20e3ce472e8d142b9b91c40b05 "seed" . + "cho" . +_:Nbe5f345e330a4e8180397c50c1b91a72 . +_:Nd37d7bca37ca4048a7a659d734bb3a12 . +_:N26a7cc3a64ca4a229a0a125450fb1a45 "faldo" . + . +_:Ndbf4c6e662cd44c08a4c4921f247f7e0 "KEGG-path" . + _:Na82f715018494cd4a0cc980e42a90f98 . +_:Nd05b0508ad72487c8e6a7b8ea798f7f9 . + "SugarBind" . + _:N2117d326d9554a74a9a0c534de46de44 . + "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease." . +_:N1b6b11928efc447188612e6607a86fe9 "WD_Entity" . + _:N37a0f1feab144a9fa80ba69e75be366f . + "None" . +_:N8a1c552d2fc34483b924ae1f6e9fb79b . + "https://identifiers.org/arraymap:$1" . +_:Nb02c6708ffb14a829fa84ed95f50adad . +_:N553dbee5035941fcbcdc18cc12e4652f . +_:N5b90f6783d394007aeb0511b376f7db2 "viralzone" . + "0000001" . + _:N7e3379b8d5ff41289ba7b006c3caeb69 . + "Metabolite and Tandem Mass Spectrometry Database" . + "MobiDB" . +_:Nabad437312b2484ebf923b430ff59075 "vmhreaction" . + . + "ExAC Variant" . + "false"^^ . + "false"^^ . + . + "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments." . +_:N237fa065f36643309d5f2247a3871a45 "mobidb" . + "https://identifiers.org/cbioportal:$1" . + "Life cycle stages for Medaka" . + _:Nb1af4bb46654468393bb703e5f2bc063 . + "false"^^ . + _:N05c625c40b2044f9859d8c305e0d35b1 . + "BioAssay Ontology" . + _:N119c676e75d442b0a2985e0291a80f9d . + "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+" . + "^BG\\d+$" . + _:Nc8c280ea5ba84f1faea720abb402c55e . +_:Na2412d83215f4fe69e57d5f0f2834786 "mirbase" . +_:Nd6d1d9333a3044f89652e53000ec71b2 . + "^[A-Z][a-z][0-9]+$" . +_:N263c9655958d46d99fd91409cc77ec75 . + "None" . + "https://identifiers.org/seed.reaction:$1" . + _:N021698e78a8446c5b0973d9be5dd7375 . + "false"^^ . +_:N339fe6cc92524b3e8b1ab691af31c308 . + "^[1-9][0-9]*$" . +_:N6380355c422d45b9957d137f59637cc7 . +_:Naee7dbd63c054373ad702d392278c915 "phylomedb" . + "LigandBook" . +_:Nf8512b7ad2df4b3badedea9b45cdb572 "UNIPATHWAY.REACTION" . +_:N42d33c75a2a142b88983e5d7af7c548f . +_:N7ae65433d3344bd78cc8552ad1faafa5 "DOID" . + "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80" . + "https://identifiers.org/NMR:$1" . +_:N92a236914b0345899772053976729536 "SBO" . + "false"^^ . +_:Nff2b975dad774c0c9c2ec8441d38dfe2 . + "^\\d+$" . + "^MMAR\\_\\d+$" . + "Human Protein Reference Database" . + _:Nf10ec361fd54475189057d3840b0721b . +_:N53a5148bf47047ad8c626efbc85e7212 . + "ECOCYC" . + _:Na2fa668ec9a945c7a262c1d31a8eca89 . +_:Nef04b86438174a12b6dff350264aace3 "kegg.environ" . +_:Nf57ef7763459434c9ebc5f219e9e4036 . +_:N78e3b8a5166344c4b6f8835fb1d3733a "SIDER.DRUG" . +_:Nbc3e1ab951f844db9ad59dbb2ea058e2 "DBD" . + _:Nf12d9baf719a43758ae1069043a328f9 . +_:N49f8f3eb8eb04d1cbba747872e4b8b5f "BioCyc" . +_:N2516fcf841de4bc5a68b8666452b05fd . + "1968" . + "FamPlex" . + "BLL" . +_:Ne59833372ce74bb4ac673537b80b9d7c . +_:N7149d6baa1a24acabe738e51f25fb8b4 . +_:Nab527ea683a54679a8e53c991deae608 . + "^IS\\w+(\\-\\d)?$" . +_:N6c61209c38364e2fb20ec3ad7ba9a8ba . +_:Nc3ca6ab2f76c4e93bdc3c6a1953e1c06 . + "0001" . + "^S-[A-Z]{4}[A-Z\\d\\-]+$" . + _:Nd30c5f284f714b86836137d5bb85825b . +_:N2fe7892b80284a459a86c3474873c3ff . +_:Ne0e53293a5a8482486ca0640ad1589e9 . +_:N31ab09e6ffef4820beddb631d8a4c00b "pscdb" . +_:N34a8b7976d32494093310fb70462f9fc "umbbd.rule" . + "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings." . +_:N187711bb1f0e40dd91cda5a2836fce98 . + _:Nd930711a60094fd9a11fbea0755928c6 . +_:Ne11f9dc43c4948989a887319421607c5 "resid" . +_:Nd013f8df646c4a43b80e6e2b44761e99 "clinvar.record" . + _:N1c843245544c40d2893f436ce8d1e763 . +_:N78a37736ae5341579e88dc7b83e18477 . +_:N4e33bec2935245e49ba76a0f40376907 . +_:N238c7a37ec0c417e9338370b30eeb1e3 "comptox" . + "Tree of Life" . + "Ontology of Biological Attributes" . + "OArCS is an ontology describing the Arthropod ciruclatory system." . +_:N1d4a248ceaa24e83a6d9d3a98c492357 . +_:N34b639061bf543eaa12f958ac31d5c21 "igsn" . + "false"^^ . + _:N8f8b9758e164488297563d218a319351 . +_:N80951b1ab1434ca197c942369315103d . + . + _:Nd651287881a548e5ad0bb1f3a6901816 . + "26" . +_:N5bc38fb1bb924ca6bfb78d889dce42fc "fbcv" . + "HBG004341" . + "Golm Metabolome Database GC-MS spectra" . +_:Nc38707fed67444a18a6cd121040eb5df . + _:N5cbd0843365648eca21fb8447aa00087 . + "Resource Description Framework" . +_:Nec45299bc1e54f3c8bf8982ee5c7d22e . + "https://www.ncbi.nlm.nih.gov/nlmcatalog/$1" . + "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD)." . + _:Nc384f38a27f24d7eb13afaa8f27448f0 . +_:Ne3c92ffcb8df480ea493e70537bcaa46 "smpdb" . +_:N1b53b76fdcbc45b48385d152888f42fa . + "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases." . +_:Ne2b38b301c4e45bbb0914d6ef27da749 "fideo" . + _:Nedb0b07e3c4c44e4bc0aec4352f3355a . +_:N915213286aaf45949781fcfba0afc819 "merops.inhibitor" . + _:N72c36336b67f40fe8797ce2f926cb00d . + _:N20fe3cfbe4bc459f8ea76dde253f81f8 . + "A structured controlled vocabulary for the anatomy of fungi." . + "Emotion Ontology" . +_:N408e07ff62814e499b57f01673aebfa9 . +_:Nceeaeaf20be7423baaebdcf76d73153c . + "false"^^ . +_:N5d00e1d30d474c15a2f91e17d2b98523 "psimi" . + "None" . +_:Ne3483c04792b4e808732e2ec9b63eb0a . + _:N8d7b1bcc65e043f789056fc6938c62d0 . +_:N8c668438debb457e935e5d06ad2a9e96 . + _:N629ed54588c446d3bb55fc8ee9ea3910 . + "A manually curated resource for the representation and annotation of metabolic pathways" . +_:Nbf015f1fb9da4e378abad99b2403e799 "SGD" . +_:N6b8a4afb0b7341afa8934882cec3cebf "ORNASEQ" . + "Mammalian Phenotype Ontology" . + "https://fairsharing.org/$1" . + "CCDS13573.1" . +_:N63b50ff859da4c35bc79ed2cfd16dcbe . + "^EBI\\-[0-9]+$" . + _:Nfb3fb2dfd41042ca8102dfe58ae938b6 . + "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world." . + "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions." . +_:N9d65dbc266294fb4b8011ff3f851e586 . + "None" . +_:Nd4af2fb99caa4b4594e1c596990848a4 . +_:N72306aebbcab4125b79c078ec85f822e . +_:N8ea3b8969db84d00b95c4188dbde1dc9 "pazar" . +_:N4e903f09b7024269a8cd84610be7e8f2 . + "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl." . +_:N4049d50a136c4f3198f6f2f5eef93b3a "aism" . + _:N511a34bdceed411c945075563d11023c . +_:Nda0aa2eba30b470daf45a0b0446c4a5d . +_:Neeb938500ed2466ea60aef8e20805781 "TTO" . + "https://identifiers.org/kegg.genes:$1" . + "clinical LABoratory Ontology" . + . + _:Naedd779b64fd4e298aa3a03b634ff236 . +_:N2e062a7e9b1742b1881527d05d3e404f . + . +_:Nc3eff2448e4c4dcdb14e36d82c3dd78a "msio" . +_:N34c69bac7a1b460691a23737f2561b84 "dip" . + "None" . +_:Nb9eb74e0dfe44c47864d6566e6a7f30f . +_:Nde840be0d20b4d0db8b6e1e8fca4e431 "DDANAT" . + "https://identifiers.org/tarbase:$1" . +_:N2a5079da6dbe4bc2a9f19b3302cf91a7 "medlineplus" . + "https://www.w3.org/ns/dcat" . + _:N98565da8e0af477ebed5f60b1526a6af . + "OBO in OWL" . +_:Ne892a26719464c42ae5603185440195a . +_:N928db7eabdf6484fad8c2e88dc38c18c . + "false"^^ . + "ChEMBL" . + "false"^^ . + . + "None" . +_:Nfaafd64430884b9a8e4fb34878b458a3 . + . + _:Necd37b11f2df40d5b7e5b916ab4616bc . +_:Ne141d76c648e4e42813d0349137f62d4 . +_:N2b24096c54d84093a7fe2fa856299562 . + . +_:N1e81e4602e914b48b428fe5ca302bd86 "omp" . +_:Ncaab82f9bf5f4d059a23af71cc2498d4 "gtex" . + . +_:Nf1d924fec68e4208bb99c02ad8a1fcf4 "UMBBD.ENZYME" . + "LIPID MAPS" . +_:N6138a792c33b4fe4805274fd8bdb6740 "GO" . + . + _:N656272c74607400294159953e2bc6bb1 . +_:Nff27a709af3a4fe8ae01cbece23d2e39 . + _:Nbf2ead381b834506bd1c93b90b605d2a . + "None" . + "^PR[0-9]{6}$" . + "Human Phenotype Ontology" . +_:N441c723af283460d9c7867b203959c9c . +_:Nd8569863234046bda21946867c958e0d . + "false"^^ . + "https://identifiers.org/glida.ligand:$1" . +_:N4d030b2a236347379c441222b3c079b1 . + "https://github.com/obophenotype/bio-attribute-ontology" . +_:N51540ec53ad5463ba6662f8e04111906 . + "47419" . + . +_:Nc04e9589a9dc451d9009071a57ebae03 . +_:N64e4aeabaabb48a2a0cbed49d01a0069 . + _:N3d69e158c0b846178598c77bc9005ac3 . + "^[A-Za-z]+\\d+$" . + "^M\\d{4}$" . +_:N39fd177c704b4bb596d720ce17ed5704 "erv" . + _:Nca1feea8a17d4634be588310f37d4c7a . +_:N8fda8622a27c4aff8eb4d686ccfaa1e8 "PHOSPHOPOINT.PROTEIN" . + "https://identifiers.org/bigg.reaction:$1" . +_:N469b76f3473447609730cca7ec847bb6 "P592" . + _:Nec013b679fb34d1689c15e57aad10d1a . + "frederic.bastian@unil.ch" . + . + _:N81506de719a34a85b4aecccc46696ca4 . +_:Nd7fd07de534b45e9992745b5e852ecf6 . +_:Nedc4036818664f18bc3e236d1e114882 . + "PubMed" . + "false"^^ . + _:Nfb67ce57a0f44f54b1e10500bfae963e . + . +_:N25b95c19c3574f67bd0f186bcc133784 . + _:Nf489ad15476949ad8bcf32122ebc1d1a . +_:Nc0d833e9cb664195b674833b059ee5bf . + "4349895" . + "https://www.ebi.ac.uk/ols/ontologies/cio/terms?iri=http://purl.obolibrary.org/obo/CIO_$1" . +_:Nf43178f152ec46eb85b442d91030d08d "soybase" . +_:N9a8e93e0882d483dbf160e630410e766 "P2275" . + . +_:Nca1feea8a17d4634be588310f37d4c7a . + _:Nb1e0969dd2a54e268d30a6c06303a52a . + _:N1f768234d8a04057a7c0dbe7f5226a21 . + . + "http://unite.ut.ee/index.php" . +_:N05f6d331fc014c70ab92098693faca1a . + "https://identifiers.org/odc.tbi:$1" . +_:N2319db45c3bb477e98e016398e3d25d6 "clinvar.record" . +_:N909cf920cb5a4bd4a382c80868ff31bb "DERMO" . + "01001" . + . + . + "https://identifiers.org/UO:$1" . +_:N56ee88f98f5246af92269006d0fe1ecc . +_:N0f68572c69e34220b6e8ba166c126bbe "AOP.EVENTS" . +_:N072174f3d5ea4407a8d9b670c3ce3774 "OGMS" . + _:Na4577d31addb44a69c9007cf3b3e5011 . + . + "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$" . +_:N5abfeb9a9bab48db9bcce98639f6c572 . +_:N5b74197f93f04a03afa0ba71726fa26d "IDO" . + "NCBI organismal classification" . + "https://identifiers.org/fairsharing:$1" . + "false"^^ . +_:Nf03ae32997fe4ad7b673f64a284fe273 "pmap.substratedb" . +_:N8ade180670884c63abca270e77476d2b . +_:N05c625c40b2044f9859d8c305e0d35b1 . + "75" . + "false"^^ . +_:N80951b1ab1434ca197c942369315103d . + _:Nf09c74910bde42dfbce5b42bd65699fc . + "false"^^ . +_:Ndd8427094a264af5bd90879585b7bfa0 . +_:Nc8f499aaabdd44d689d297aec6e00ada "ONTONEO" . + "0000050" . +_:N49d788d083e74a20a4d40dd53e7bee94 "biomodels.teddy" . +_:N96965fa798de4e188d1ef53ab5c3b85e . +_:N0aad24f38df746f89f2df1efafaca908 "TFClass" . +_:Ndec3f37cd9044bc8b1fb44fcf54b2b7c . + "None" . + "r0001" . +_:Nbc9424f30cb44681aa45b9104293a2f5 . + "D00123" . +_:N96d6da5469f3442baacef53a0111911a . + "https://github.com/SpeciesFileGroup/nomen" . +_:N7fe62b0105984f09b44d10bbb32a1a4c "ctd.gene" . +_:N5182ed9925ab4dd0b19337a5a50e343b . +_:N3c06a7d0a6f54e3f940146e2f1ddf077 "ApiDB_PlasmoDB" . +_:N5b582358d28642da9c19e580f92b4a0f . + "^HMDB\\d+$" . +_:Nc98438c4c98941a28563da307811cac7 . +_:Nfe0e662e1c00431eae76bbdea7b0ea43 "SITEX" . +_:N2da0ea0c31a342d3a56c73b203281715 "peco" . + "https://identifiers.org/atcvet:$1" . + "Bioregistry Collections" . +_:N145c70201436477abc8250897e5ea694 "pdb-ccd" . + "ArrayMap" . +_:Na280adb305d449ba8d438864b1633114 . + . + "None" . + "None" . +_:N87e64bacb936484f81f1b7ad129098fa . + "https://github.com/PlantPhenoOntology/PPO" . +_:Ncae1a398fccb457ba220d527cb7dc78d "metabolights" . +_:Na5cad4e125ff4778b355bb3ea14b2121 . + "OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). " . + "Human developmental anatomy, timed version" . + "^\\d{6}(/\\d+\\.\\d+\\.\\d+)?$" . + "http://www.antweb.org" . +_:N74cd2639e0ce4033a9bd409eca77b3f6 "PW" . +_:N799e39d2e36247bc8fc90090dd01adde . + "SNHG3" . +_:Neb2e818566a1405cbd85df264e8c54a9 . + "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1" . +_:N86c1485056024d7396547a794cddea17 "tigrfam" . +_:N59d2db01e2e145d8986b36dcaa21d3ab . +_:Nf8d81658dc014c21a1b91c92785315a7 . + "None" . + "Regulation of Transcription Ontology" . +_:N8a7bbc0367eb4477938cd72dc336ae08 "UniPathway" . + _:N27e969ef47a44281a75fbc72157ca550 . + "16S rRNA gene database" . +_:N47a348212f2a4b7495278dc674705399 "repeatsdb.structure" . + . +_:N18961230ca284e4397b1951cac5fcdac . + "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers." . +_:N6acd567fcba447e59b54e241305f9e00 . +_:Nc8906423ccd94543b24637dbff9e3baa . + "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1" . +_:Nc0f48ce744b34fb2a4ffc9f601f110bd . + "http://ecoliwiki.net/" . +_:N7e3379b8d5ff41289ba7b006c3caeb69 "USPTO" . +_:N5f61c955b8e844d8880129ef1306fe32 . + "ClinVar Submission" . +_:N2b5aefc47a56479f81c4c136d20b089f . +_:Nda9d3100808f44149d2f15f6e38aecd6 . +_:N222e2ee8a6774a23be7daf7549f7edcc . +_:Nb82b01fb16bb46749b8023e2cb55a3f7 "FOODON" . + _:N0cf56ae80e0646ecb44539c5094ee18e . + _:Nfcf42d2a7bf34ceda665b4037e791fce . + "Human Plasma Membrane Receptome Families" . + "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections." . +_:N7a1b545836704a7c9936c72bf3357aff . +_:N06db56cb3b8946d7aedf6fd230422413 "gxa.expt" . + . + _:N1bebf4bdc80e431a90e6bb5682641a62 . + "^ENSGT\\d+$" . + "MIRIAM Registry collection" . + "^\\d+$" . + "https://www.ebi.ac.uk/ols/ontologies/gaz/terms?iri=http://purl.obolibrary.org/obo/GAZ_$1" . + _:N2a683facfcd0463b80f785b35d5415ac . + "A representation of the variety of methods used to make clinical and phenotype measurements. " . +_:Nb0766858001b44369b7a96e7adaef53d "ITO" . + _:N8da47ac6c9724597be39362a74741627 . +_:Nf7e75ea6fe114b61b444b873f805abb1 "biomodels.kisao" . +_:N877c48fdfdfb45198051bc40c4a5c7ca "ENVO" . + _:N3fe83730d48e4557af8ca597c69f6ead . + "None" . + "false"^^ . + "^Q[A-Z0-9]+$" . + _:Nc677b50359f64594b3bd2315ed713a95 . +_:Nf1b61650628e4965afd67d3a9466b6ab . + "https://www.ideal-db.org" . +_:Nd1327da44d344b6eaf5843d649f19e39 . +_:Nb4f01873cc414bce9e25c71bbb0ab066 "ensembl.fungi" . + _:N2928052771e74ef9a5da993f427862e0 . + "false"^^ . +_:N239e103147e1414ebc05120c3a4e9d17 "ilx" . +_:N0fa9baafec8a4276865040744a9f7273 "FIDEO" . + "http://www.vbase2.org/" . + . +_:Nc8c3e12bada44fd4b96091e8fe6aeb5d "goa" . + "http://www.ebi.ac.uk/sbo/" . +_:N72998157bae248c49f7e49b0f92af384 . + _:N7411f1e9e29346f98db96fc1d53c782d . + "Database of Macromolecular Interactions" . + "https://github.com/ybradford/zebrafish-experimental-conditions-ontology" . + . +_:Ndb791e987bc74ca1a2d1c80cff67dabb "hssp" . +_:N0fc43559df264091b9787636850b7688 "ricenetdb.gene" . + _:N96a23e2293d14402b3ac7d59eb60cb9d . +_:Nc0a56045eef2410bbfb1adbff1ba529a . + "Experimental Factor Ontology" . + "None" . +_:N88dce4ec04da4328934d6b2032341c2a . + "FBtr0084214" . + _:N3106f42356b44121a5a49b3fc9ee6124 . + "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes." . + . +_:N85291fbc09af40949d57534ecabedeea . +_:N259d1b905fbe4583be705da629ca7c48 "FBOL" . +_:N41b49b2fdd6d4716a5a81a9ed4cf9b71 "PANTHER" . + "PROV Namespace" . + _:N3ccf71a3353f4ecb992ee3c6216b5dbd . + _:Nf95c00c8b0b34fff8983bc5c0a83aa01 . + "LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds." . +_:N07a2c9ded8a9468183f520a5134f3675 . +_:Nbb3f13e5992a45e3b9c92fb80457ea11 "OCLC" . +_:N9bd509708aa64f7eb2394f329d45db50 "wbls" . + "false"^^ . +_:Ncfdce173db2047a6a4f6e83d56ba5e9f "gxa.gene" . +_:Nca8f2e70bb5249f3875290e7a5a9737b . + _:N0752d4e8c2614fb6ad634c5b9759bdf9 . + "Eukaryotic Promoter Database" . + _:Nbd3f011629524aacbf5ad68f6dcc94ed . + "^\\d+$" . + . +_:N5abfeb9a9bab48db9bcce98639f6c572 "google.patent" . +_:N5db5d0134a3b4ac3ab6ab94430f9238d "worms" . +_:N78d0fb9821b94e8fb4eec2860649cad3 . + _:N3458b2b01d2642c1b76f1290871fddc0 . + "https://www.ebi.ac.uk/ols/ontologies/vt/terms?iri=http://purl.obolibrary.org/obo/VT_$1" . + . +_:Necb0716988364380941ce17185e58b1b "GR_PROTEIN" . + _:N5b582358d28642da9c19e580f92b4a0f . + _:N806585aa73de468485660ac890b4f0b0 . + "https://www.pombase.org/" . + "3D Metabolites" . + _:Nfca19da5d2cc4360bfd3272056bf2e89 . + "https://github.com/obophenotype/planaria-ontology" . + _:Nc3ce354e14e54e24ae58d9ef8c6abf06 . +_:Nf5e729df716849a7b307ea7f091a6869 . +_:N6f4f949a62694a73b983a073fdd5f2c5 "MPIO" . + . +_:N64bc2774be114757af571adf4abe4116 "unimod" . +_:Nd44f9958fa27402a84e1fb08155ebff3 . +_:Ne3cafdab25b24746b4c79a6af752cc91 . + "28789" . + "https://smid-db.org/" . + "^K[0-9]+$" . +_:N7001c0aa46dd4ecaa4884632be237bb2 . + "https://www.humanbehaviourchange.org/" . +_:Nf86409038a46471db5fe61ed81074fd7 . + "https://identifiers.org/unigene:$1" . + "https://identifiers.org/MP:$1" . +_:N09acafa1962646c5b4c3285f2cf60bfc "ZECO" . + _:N2568221a60fa433ca6f565e121127eb7 . + _:N575376cffe8b4341a40d43f2bf3eaf90 . +_:N3db681270eac4e60a7321ca3064a2cff "mod" . + "^VB\\.[A-Za-z][A-Za-z]\\..*$" . + _:N537a143ec5e343bd8b7e1329336d19e0 . +_:N5897728f36b14220937df223f31ac564 "oarcs" . + "Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015" . + "NMR-instrument specific component of metabolomics investigations" . +_:N1742a07adb10402b93bcf196f9b6bd1c . +_:N8d61299627c346538a1bfade53ea836d . +_:Ne32aed7f42574597b34bb9d6bcca3adf . + _:N660e089d909c4ba69cc9184e8acf4dc8 . + "http://www.beetlebase.org/" . + "https://nmrml.org/cv/stable/nmrCV.owl" . +_:N94c4885d8eea428f9bebdd3857c14841 "PTO" . +_:N28218847d0304685a9c506c6d668b009 . +_:Na14bdd0b1c3144f08293ba707ac828a5 . + "^\\d{7}$" . + _:N98d9751741d14917b3d7fe23e9746a73 . + "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$" . + "An ontology describing the anatomical structures and characteristics of Porifera (sponges)" . + _:N178f5e6c3d0d44678b64e58af14356b4 . +_:Na7c02807fc9a4181a76dc74c1c75f9ea "PR" . +_:Nc28c7af3c1634cbcbf197adfefa02c7c . + "IntAct Molecule" . + "Castor bean ontology" . +_:N7268d2e7f64842e18f786249ff12a21f "MMRRC" . + _:Ncdbeae57f26a4b4fb06ced401a30e440 . +_:N7d698738e6ff4e5190c60dddc2c31e0e "GeneCards" . +_:N5fe7e41a246944c7a35465ecc078744f . + "None" . + "None" . +_:N8a966cbd5e6049ef8d827f211f8270a4 "uniparc" . + _:N96d2f49abe5e4ef1a6ef09c19808f1db . +_:N4fc37fbeba4e4966bfcc952d2109ff27 . + "M0001" . + _:N0118a94bbb2142ad8c753d1e313066f9 . + _:N21ce3a3785de46b79a1761d78fbbf1ee . + "https://identifiers.org/imex:$1" . + "false"^^ . +_:Nd8707932d0e8475cbbcbdbbcfd2f41b2 . +_:N60c59271ea914bdabedb9e0fba39028d . +_:N0ded47946a544e9aa086c52113b728de . +_:Ncd11b4372c99419dbace89d888d6520e . + "false"^^ . +_:N232f2a2786a54e9b83c5822c7ba7d427 . +_:Nf8512b7ad2df4b3badedea9b45cdb572 . + _:N316e130d0ba04dada83e1847b32c3364 . +_:N7f36ee1f759241038a793ff9a2bca20f . +_:N937ad05322344107946eaf05b36e3dcb . +_:N244d728b56084ce48bd419f0201fad66 "storedb" . +_:N82a83b8062d04366ad3c5f983c1161f4 . + "2gc4" . + "https://www.ebi.ac.uk/ols/ontologies/one/terms?iri=http://purl.obolibrary.org/obo/ONE_$1" . + "^\\d+$" . + _:Nc8906423ccd94543b24637dbff9e3baa . + "^C\\d{8}" . +_:N42a3b62cf10a458ba4f14936f997345c . + . + "^\\d+$" . + . + _:Nb7f0fa8d803944f6904e1e1c6afcd174 . +_:Nfb40b6fb213c40fda3dcc568487f9046 . + "051" . +_:Nee375e455aa346818ff573edba18cc1d "TRANS" . +_:N22012ac256af4f259473ef56bbd5bd41 . + "helpdesk@cropontology-curationtool.org" . +_:Ncc41209a4b554b458754f8214bd83506 . +_:N6b8b9d899d6749b29e6dbf371dd5ff31 . +_:Nda2e9e6278eb45cbbdc2f05f9c56b3cb . + "ChemDB" . + _:N29a65518c1ec40fbb4e7de75f39e2e8c . +_:Nc0f8075427e7431589a59cb91de386db . +_:Nc8906423ccd94543b24637dbff9e3baa . +_:N4bc88d1ca1dc49dbada17959b03f2aea . + . + _:N19fb37367c634f30bb8c15ed0a8647f8 . +_:N61a449542a1043a59e4f97d368f0984c . +_:N82a83b8062d04366ad3c5f983c1161f4 . +_:N6238198377c342e6b92a5629ac801b0c . + "https://github.com/pombase/fypo" . + "false"^^ . + "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB." . + . + "https://identifiers.org/interpro:$1" . +_:N9ebc03e027e14672b42f82fddca4ef43 . + "FishBase" . +_:N6f311f9d52294ba4800c86a5dbde5dc2 . + "^UCR\\d{5}$" . +_:Nbd3f011629524aacbf5ad68f6dcc94ed . + . +_:Nb73511ea1f704e3d9a362feada7d7bd5 "cazy" . +_:N187829e6013f42abb745c5d1914e8799 . + . +_:N4d0021b4cf294a14913a947a03056e04 "vmhmetabolite" . + "None" . +_:N09afc57ab0af443fa7b02e4a5c522dd7 . + "https://github.com/Planteome/plant-stress-ontology" . +_:N2d031d7d069846748a5178cb8384da9e "pubchem.compound" . +_:Nad46ffa23356460d92cd5cd943527457 . + "https://identifiers.org/uniparc:$1" . + "Name-to-Thing" . +_:N63623274a28547de88fafc4ad70595c7 . + "^\\w+(\\.)?(\\d+)?$" . +_:N782b62903ec14d7e9e2c9d8e07580edb . +_:Na41599d755ee4310a0091d68a95eb3f7 "funcbase.mouse" . + "https://identifiers.org/pharmgkb.disease:$1" . +_:N7932e26556314c34a1abdd233232306e "phylomedb" . +_:Nbb68dd2a52014aa5b048f59da59c1cef "OMO" . + "SMP0000219" . +_:N2f8e4b27b5ed447697c8ddf7b4fbd37d . + _:N98e42b19638e4318afd9e9f5e5201574 . + "Mendelian Inheritance in Man" . + _:N3a28ae1712df4fdb936c71a299ed914f . +_:N86afd1948102482ca6503a68d76e8ad2 "hgmd" . + "50-00-0" . +_:N9148dbf2d6fd4b1bb547161cbb512206 . +_:Neea47e0bb1974a4c84091ad820e4560f . + "AT1G01030.1" . + . + "^[A-Z0-9]{6,7}$" . + "AC119" . +_:Nb8b60dc00e9c4a729e546e811c6cc1ff . + . +_:Ne0e53293a5a8482486ca0640ad1589e9 . +_:Nb42cec42ee7843428b87d3f854c1e505 "GeneDB" . + "None" . + "BQJCRHHNABKAKU" . +_:Ncd2f541fb2864f1b98fb33326966d3a5 . + "https://identifiers.org/sasbdb:$1" . + "https://identifiers.org/gramene.taxonomy:$1" . + "None" . +_:Ne6dab24f98cd4f8c817fda4fc9a041f9 "drugbank" . +_:Nf6dc5a9f76ee4d8186030f8bbeccfb7d . + "https://github.com/geneontology/go-ontology/tree/master/contrib" . +_:Na75df49a0fcf4e98ab31b3f9a44e80f4 . +_:N032351d28c50486da2bfb8f70a102543 . + "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information." . + _:N8deb04dd936d4b9fb3b41171a23325a8 . + _:Na936daaff55e4bdc91742f1e69dad902 . + "Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016" . +_:N6355fa6d44e240f595dee46f84f646be "CCO" . +_:N446d72e7235a4d30bf17343c700aedfc "pmap.cutdb" . +_:N2a3eb5dc7c1d4ad3aab2523cfa36dd9a . + "None" . +_:Nbb3f13e5992a45e3b9c92fb80457ea11 . + "^phs[0-9]{6}(.v\\d+.p\\d+)?$" . + "None" . +_:N41e4c000c46c49368ce1d19e9ea20d6e "NARCIS" . +_:N089449f5ff1a45dfa3a7c8548852281a . + _:N24016b4535b14b2bad8a8d417ea26f48 . + _:Na387bc23b67247e08cfc36ed477f816a . + "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1" . +_:N656e1ff5fb60431e94f638a80bae6a27 . + "None" . +_:N716548378350445b9ef8d57ee0d72173 . +_:N3ad59e42043d4cf88f9a2ce1b9b6f16c . + "cjmungall@lbl.gov" . + 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"https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo" . + _:N6f145783f88441ebaddd4758e9377e18 . + . + _:N31e069f0d87047248a4d0e831762caf9 . + _:Nd17fdf20e3ce472e8d142b9b91c40b05 . + "false"^^ . +_:N491f8e1938c5424e9065aaaa820146ab . + "0174" . + "OID Repository" . +_:N39c0f5aa9f7a49f587c76cad457c52c5 . + _:Ncea8c147ce8f426da86a9b4f317ae106 . + "0000423" . +_:N39c12bd8213f4679a51b36052b241bc5 . + "false"^^ . + "CAPS-DB" . + "http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page" . +_:Ndb83fc4153384227a4092cdb714f7395 "ZEA" . +_:N891a4928c2714e2d9f5dcf0e8c2e9128 . + "false"^^ . + "0000079" . + _:N494e99930c234c71ab686d373ce1832d . +_:N4b8040cff25e44fd8b2bca17a798a5be "cubedb" . + _:N8bb84703445a43d2b6649de47ddfde05 . + "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes." . + "131" . +_:N85662729124e495485606b9daae71d8e . + "false"^^ . + _:N79f7f02d40dd4bad81f1677ac882ed5e . + _:N4998dced729d45c5bb9e3a35d18da197 . + _:Ne24719bbb59147159296dc9adefd92e7 . +_:N8556a1dc378c4711b9f51efd09ca87d5 "GMD" . + "false"^^ . +_:N8d0f731de1d54ba4a238b94e3a6bdb81 "HGNC" . +_:N0da1863a61c048ebb487fea4a5bd3e7c "ensembl.metazoa" . +_:N40532a85852e498bb5efa9397f28ef11 . +_:Nf82124b2610e41de8f82ad4a602ffdfc . + "None" . +_:Ndc4d598cd6da419c8cb5471a1de4cd6a . + "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. " . + "0007133" . +_:N631d26b02e154e229a15513dc1151c2e . +_:N8d7b1bcc65e043f789056fc6938c62d0 . + "AutDB" . + "^(C|D)\\d{6,9}$" . +_:Nb73f04a5fc6c4d27a6807072bb7a6c04 . +_:N05d6c3d143ad4fe2a60d93103a713031 . +_:Nd1e222dbee0d490e8d0b435c159bcf9f . +_:N8ade180670884c63abca270e77476d2b . +_:N2a2a08a7b50e4591a31a998ac8561402 . + "https://identifiers.org/3dmet:$1" . +_:N6477a030f93d43708c3d17187cfeb44f "HOVERGEN" . +_:N03c5436d9cdf42869e420ae9d29fa1b3 . + "None" . + _:Na7c02807fc9a4181a76dc74c1c75f9ea . +_:Nbb4c8200bc224971a4f929c42046a007 "CIO" . + "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains." . +_:N351b099f70604be187ac8f1609668f2f . + "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins." . + . + _:Nbc9424f30cb44681aa45b9104293a2f5 . +_:Nb3e99a7a716f4de6909cb89333a376fb "CTD.GENE" . + "Regulation of Transcription" . + "false"^^ . + "^\\d+$" . +_:N2c4e8d870cd549af8fafb07f2260b16d "bitterdb.cpd" . + "http://uberon.org" . +_:N71081f432436440bb4aa224ad49d19ee "degradome" . + _:N5752f4045d874cff90fecee9ac78bfba . + _:Nf8adda357b0a4aefa22742975e1ffeb2 . +_:N4d0eff72a5a941f6aaedb718990f5edc . +_:N5764acd03d954329b54ee5f1b40e9807 . +_:N44c742fb19b5427c8d54290acabc6fa8 . +_:Nedb0b07e3c4c44e4bc0aec4352f3355a . + _:Nb28bfb68df7e422694c18fd0f01471b8 . +_:Nc98438c4c98941a28563da307811cac7 . + "Japan Chemical Substance Dictionary" . +_:N7820678ded754ff681a11948f9571834 . + "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters." . + "MTBLS1" . +_:N11373f57eb4940f9b4c60d20edec0b14 . +_:N45dfa480632e49f395d9202e60a1650c . +_:N5c869dd7d037412fb27fea8a6514db92 . + _:N1a04ab50220047f4af0293e609a4d4a7 . +_:Nf4e1239787c1428c8f323c8155b911b5 "VARIO" . +_:N596601e463194c57953e201b1acca057 . +_:Nd9d8d71fe0f445109c512c52ccf34e05 "ADW" . +_:N6529be3816e4499a9858cb359e552b11 . +_:N092d178583694cce922c3144c996d811 . + _:Nac4a058970f348cf926a013b7e6cc258 . +_:N88ff848776274409b15d1a5b496d2b0c . +_:Ne49579a5ccd34e4398530ace4f4548a4 . + _:Na86f9a9bef4c4c0d9ecbb02bbb21bfa8 . + _:Ndc0568a6043748088c5d18be39f55f23 . +_:Nef1081ecca67416ea668afead073e068 . +_:N69bca63a9d494699be602b578d1045ad . +_:N87d1c357772b428a8dea1597afa531c4 "pharmgkb.drug" . + "ASPL0000349247" . + _:Nf86829b0e2da4d788290d4ee9a379008 . + _:N41ace234ffe2411c8bf6c087276a0d0b . +_:N015b494fa305448c86e2bcb132b5eab7 . +_:Nb127271f1f94424ba01d9be08542b6df . +_:Nd105344f5a674f8da40de58746a7a30d . + "false"^^ . + . +_:N253c7a7c5cf749529e8033085ee32e4f . +_:N7c43fcb7f154490cb0495bc410e2baef . + _:Ndb83fc4153384227a4092cdb714f7395 . +_:Nf4b049117c6d43b8bfc34484a1017588 . + "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee." . + "0000550" . + _:Nd2d971c8139444d7a1360ff104c8bfe8 . + "IRD Segment Sequence" . +_:N4fa636b2e2f343e1adc0205bb1e09053 "CORUM" . + "^\\d{7}$" . + _:N2876b4d9e67f4255a43362c31d5c1660 . +_:Nf7f1b7e8a914408687303a804b8c745f . +_:N74c690ba4a9348db9e21695da63acada "WORMPEP" . + "^\\d+$" . +_:Ne161e1e0802e4f84806633344bd5be6e . + "^[A-Za-z0-9]+$" . + "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources" . +_:Nd4963553bf81446a9d6b764d1e8afc9b . +_:Nfbe097d7e74a40da9ca97b4ae656efa1 . + "https://identifiers.org/gold:$1" . + . + . + "http://www.fruitfly.org/EST/index.shtml" . +_:N600e889aea3f49ffa9424038f19d0e8f . +_:N1f768234d8a04057a7c0dbe7f5226a21 . +_:N939c2f7edf224ca3af3e1512b04e9231 "tgma" . +_:N806d6c3ea0a347f19ed4a102ffa1f4ac . +_:Nc25d42d228bb492798ce68c6f3027cb4 . +_:Na3e1224b196f40fd9f21ef0cd482d499 "PGX" . + . +_:Nce0049f736bc4eb4940186f90c3bc881 "APD" . + "An ontology to describe entities related to prescription of drugs" . + . + "false"^^ . +_:Nfc5d39f6f1d4418dbfe0e0cc03d5a0ce . +_:Na3d0761e095243109fb08b5a38f69ab3 "VHOG" . + "Polygenic Score Catalog" . +_:N2a683facfcd0463b80f785b35d5415ac "chemspider" . + _:N8fe7e785455047f6ba169a161fb66a25 . + "None" . +_:N1ca9bd4931d74a6c8163f3f4635725c7 . +_:Na00bfbf203fc40fbb63ecc2527a493f9 . + "http://www.w3.org/1999/02/22-rdf-syntax-ns" . + . + "https://identifiers.org/aop:$1" . +_:N9f42df6e04df4b2bb40de916c01dda78 . +_:Nc8ecf845bc064929bfbc6f8ad6c91e7b . + _:Nebbf4cdff6dc44eb8a530ad6266987b5 . + "https://identifiers.org/hcvdb:$1" . + . + . + . + "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3" . + _:N35dd8df0ac5f4f0b860b1d6f4fb118bf . + "https://www.reaxys.com" . +_:Nbf652f57d49447deb6d80a3ef4977272 . +_:N0800c26950534dd4ae965d2e81217946 . + _:N166d2b0707fe4488b011c77ad5c67963 . + "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law." . + "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms." . +_:N748c7e36009b434eb7121dc7efab8285 . + _:Na3d0761e095243109fb08b5a38f69ab3 . + _:Nfd0ec11e5a53471394f5f6c155b20971 . +_:N6fa8ba1e749341ffa56ed021fd22f243 "AFFY.PROBESET" . + "Vertebrate trait ontology" . +_:N184226fd74be4ee2aaae8f86fe3d1a56 "TAXRANK" . + "false"^^ . +_:Ne46046e5bc744f1eab8c79624a9e10e7 "P2926" . +_:N4b6cb01fa90c4430a535695b862d039d "pass2" . + "1" . +_:N1f05460b89ed4daa9a63d6ea28e58ae3 . + _:Nb72c2707323e41f9b45306fa978d4e02 . + "NeuronDB" . + _:N4756f3e592034daf98118bc5fea119d6 . +_:N44ef22124839436e93e45e447bdc7507 "px" . + "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$" . +_:Nc0a56045eef2410bbfb1adbff1ba529a . + . + "^\\d+$" . + "Systems Biology Ontology" . + "31623" . + _:N37f9900958de4c9cba10aa386ef9eaa3 . + "https://www.ebi.ac.uk/ols/ontologies/nomen/terms?iri=http://purl.obolibrary.org/obo/NOMEN_$1" . + "^virsi\\d+$" . + "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands." . + "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures." . + "http://www.nbrc.nite.go.jp/e/catalog-e.html" . +_:N9cea9c81be6f4e299f214541794b6fec "MA" . +_:N892332231429436daa752baeab01b6c7 "MULTICELLDS.CELL_LINE" . +_:Ndb7e5fc5540c49ecb76709cf8fca9e51 "ubio.namebank" . +_:N120a35aff4544c16a603b8a8cece8a76 . +_:N43a1f7f841d04d328d2a7b8739f7ed0e . + "false"^^ . + "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information." . + "Genetic and Rare Diseases Information Center" . + _:N6271912426194d859a306b984ea6b363 . + "https://identifiers.org/phosphopoint.protein:$1" . + _:Nb5dd2ef4da8b44bc970c339408366c7b . + "^\\w+$" . + "456789" . +_:N8d552fe43519487494f546c67a976418 . +_:N12aca4ef679743d19046917d38914910 . + "H-InvDb Transcript" . + "None" . +_:N351b099f70604be187ac8f1609668f2f "EUCLINICALTRIALS" . +_:Ndeaf53cf76cf4df0995815aecb694682 "co_345" . + "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations." . +_:N0fdd0d6ca657410396fdef3dccfaea59 "rapdb.locus" . +_:N9ff5f89284db4a33b4c4757d133e9dd5 . + "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$" . +_:N239890447b5949498bee92396c4169b2 . + "None" . + _:Ne75997fe12634b189e4d5e710dd6e126 . + . +_:Ne0d58ea4554f4334a4a27cfc6fe0ba13 "P1550" . +_:N437906cbf04b4deaa1ce22e58219eb38 . +_:N53945eb165e746beaee44c3c4c4e5ff8 "LIPIDMAPS" . + . +_:N2a6871f92ed943978814a222c4c11db6 . +_:N7001c0aa46dd4ecaa4884632be237bb2 . + _:N8ed6bffed4b547a2924abd655fe91ce9 . +_:N2f1e61249cd440019e1481b89c1f50d8 "cgd" . + _:Nbc138365347c48219d67bd2bd8115cff . + "OMA HOGs" . +_:Nee8c09b7b6e44765a1f7d15e5ff3c634 . + _:N2eff8d0d250a4a0091cf5e0308b2952e . +_:N355e143330944ddaa4d412560999a139 . +_:N469d2bfe1e914423afd45678443693c4 "bold.taxonomy" . +_:N39fc3df53c004ad09ee2a5880561db3d "HOMD.SEQ" . +_:N0462cd92567c40feab2dd5fd0c59431a . +_:N6f2ac14b844f43469270fa8b2fcfaa93 "NBRC" . +_:N2f65b03ff7954df491fa609271cfc2bf . + "https://www.ebi.ac.uk/ols/ontologies/fao/terms?iri=http://purl.obolibrary.org/obo/FAO_$1" . + "None" . + . +_:N8d61299627c346538a1bfade53ea836d . + "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources." . +_:Ndbf4c6e662cd44c08a4c4921f247f7e0 . + "false"^^ . + _:N39fd177c704b4bb596d720ce17ed5704 . + "https://identifiers.org/genewiki:$1" . + "None" . + . + _:Nbd77f1cf9f4f4fb2b17641592d0004ce . + . +_:Nf4a90a0c4bb545dcbfed5eb502003388 . +_:N3af91a2840d640fa87b0ddf879ddd7df . + "https://www.ncbi.nlm.nih.gov/protein" . + . + _:N5ec0a2e6e91447a08f96a8135fb6c60e . +_:N585dcf478e2545a09b891c5be3bfa302 . + _:N5f35e9790af04c9bb0da94160b2adebc . + _:N7c43fcb7f154490cb0495bc410e2baef . +_:N6c457077e66348b3a57a181fdc0fb0b0 . + "http://rebase.neb.com/rebase/rebase.html" . +_:N7aba300aea5b49beb5af9dc208496ce9 "PHARMGKB.DISEASE" . +_:N52165dde142b4fa2894e163f44dc0793 . +_:Na95ca4a28e564c86884911f795a7e5a8 . + _:N955c4146e43947e587de3430290a3707 . +_:N915213286aaf45949781fcfba0afc819 . +_:N750490d050564bc4b597cd8d938c5428 . + "None" . 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+_:N5f293e52ff4a4e00b2883ee52edbd429 . +_:Nfc6eac62a3d943da9a877914473240bf "RICENETDB.REACTION" . + "None" . +_:N826cd6a56a694c2ab8c6f85e103b1507 "GRAMENE.TAXONOMY" . + _:Nf22149e6330a47abb5ba82bf1a617855 . + "Database of Complete Genome Homologous Genes Families" . +_:N5751b1490fbe4702addcafa52560b1a7 . +_:N983ad9459f9a405e96dedc39afd614ab "SEPIO" . + . +_:N34a8b7976d32494093310fb70462f9fc . +_:Ndf7e26d289e041c2abb04859975bee27 . +_:N9fd6f3fc85e744d8a247ea326087e160 . + "MycoBrowser tuberculosis" . +_:N1fd53614f0e34052adccc66f3b013f82 . + "https://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_$1" . +_:N2171494281d940b189f9173d888ac7b5 "biocarta.pathway" . +_:Ncc41209a4b554b458754f8214bd83506 . +_:Nc8240a3f41b942bc952e16d9dd48bb40 . + "false"^^ . + "false"^^ . + "COMBINE specifications" . +_:N2d28fd2bdb094b6886811234ea9032a5 "PROTEOMICSDB.PEPTIDE" . + "CATH superfamily" . + "false"^^ . + _:N69cd46d39dfa431daf6a6187977e87a2 . +_:Nc5f4f99e79ed47509ab2540347b4ef1a . +_:N83f469a2c47d43ddb5e1534bf7eadef5 . + "https://identifiers.org/vfb:$1" . + "https://www.ebi.ac.uk/ols/ontologies/ogms/terms?iri=http://purl.obolibrary.org/obo/OGMS_$1" . +_:N50b4578135e541599ab0fd660b003eb9 . +_:N781c309c800d4614901fe6da57296fca . +_:N3a0531692bce495ba8a872fc12ccf954 . +_:N6f311f9d52294ba4800c86a5dbde5dc2 . + _:Ne59833372ce74bb4ac673537b80b9d7c . + "http://www.cropontology.org/ontology/CO_345/Brachiaria" . + "^\\d{7}$" . + "GnpIS" . +_:N79f7f02d40dd4bad81f1677ac882ed5e . +_:N9afd91d3f4274d38a303b281ae794191 "sasbdb" . + _:N03e569e011584982a5d01e2b497073e0 . +_:N8a76711727364db987824a7ee964a8e5 "FAIRsharing.e1byny" . + "https://identifiers.org/paleodb:$1" . + "None" . + "None" . + . + . + . + "PELNAW" . + "false"^^ . + _:N5026165633ee40a6b233c78a6eb00581 . + "https://identifiers.org/mesh.2012:$1" . +_:Nd083ba5fa9a0442b82850f69a81e323a . + "false"^^ . +_:Nd90314d82fbe4893855788a96f7d5324 . +_:N8c5c7cf79b4b4c7582a214f4db53ca42 . + _:N6bc4d6b3a8904edd88460f7c01926fe0 . +_:Nccd74157f05f45f59692afb17dcda6af . +_:N1e75f09f2c9444db98de62b6965f0ea4 . +_:Ncdccb0c4bd9141d2a94015ed34ac0dd0 . + "1398574" . +_:N108640097e3a40a7bba9259c10972a7a . + "0001017" . + "paul.fabry@usherbrooke.ca" . +_:N7001c0aa46dd4ecaa4884632be237bb2 "cldb" . +_:Nb9db43753a944e438f46a49cf0f49600 . +_:Nd9431352917b47808b177a760f5010c3 "pso" . +_:N31d1258994144cc8be7654ff7a988c67 . + _:N1b95267c480a40f095566f1894191ac8 . +_:N596601e463194c57953e201b1acca057 "DRON" . + "614" . +_:N6ffe2f52c07e4208b7d246dc72c77752 . +_:N7671decde6854dc286a318d53e2b2fdb "isfinder" . + "Odor Molecules DataBase" . +_:N73b31b692997431387a08f0938dde443 "RO" . + _:N63f52e74a8b44e8da4b99cde6742d89c . +_:Na75df49a0fcf4e98ab31b3f9a44e80f4 . + "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms." . +_:N24d6e1947a37488ea88d10bcc667553c "BioGRID" . +_:N73656ba2f59a4db983de8ce6b0816821 "EXAC.TRANSCRIPT" . +_:Nce751f5be2264af5bced296248a93f0e "asin" . +_:Ncaad05c21c4e434ebbdba254400e7dd9 "hsapdv" . +_:Nff27a709af3a4fe8ae01cbece23d2e39 "co_360" . +_:Naf77c6633cb045bd9ffcd900425f2a03 "htn" . + _:Ne49579a5ccd34e4398530ace4f4548a4 . + "Rat Strain Ontology" . + _:Nf494234c875340f787e0e41ebcc829a7 . + "None" . + _:N826cd6a56a694c2ab8c6f85e103b1507 . +_:Na191d51c9e7e46b6855bf61cc9749bc8 "chembl" . + "^\\d{7}$" . +_:N656e1ff5fb60431e94f638a80bae6a27 . +_:Nc2abf192253d4c7784675dc8755fa6ea . + "[0-9a-z]{24,24}" . + "None" . + "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used." . + "^Gene:\\d{7}$" . + "Tb927.8.620" . +_:N55c799007dce446eb8e04b5d4b8ebd79 . +_:N161e5d6596634b5790364bafab05b95f . + . +_:N3b557a620bfb4681b8038a34ee623eae . + _:Nd013f8df646c4a43b80e6e2b44761e99 . +_:Nd6d3901ef77146c5a3ce5a118707ae95 . +_:N68764d5f499a4ba0bf61d8db5a32a2c2 "CHEMINF" . + "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes." . + "ramirez@macn.gov.ar" . + _:N224458f5582543eab7a76728cf8998e7 . + "https://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1" . +_:N1b95267c480a40f095566f1894191ac8 "mycobank" . + _:N9291e4069462478ab2bc32a3f69bd76a . + _:N6b470e9d06a8430991b36dcdaddca9e3 . + "None" . +_:Ndefa70fa7426401d829a3dc9eff09e04 . + _:N50ff1c8461eb406f98b3b83ac7375080 . + "false"^^ . + "^DBSALT\\d{6}$" . + . +_:Nd943c937207d44e88a8a4639d86a411f "dbsnp" . + "false"^^ . + . + "false"^^ . +_:N1729355bb1134c17b527435d7ac2aee5 "VTO" . +_:N582d53175ad84e0590996817c1c610ad "morpheus" . +_:N4e909cfbca6b4f309e5b274474752582 . +_:Nfcf42d2a7bf34ceda665b4037e791fce "HTN" . + _:Nf59e996ac87b4a0884a409916cdf3820 . +_:N2d031d7d069846748a5178cb8384da9e . +_:Nf1ca5b113a6e487b86cecca493e8dd7e . + "false"^^ . + "2673500" . + _:N6975a7df041545cc8c0d1cccdab5c923 . +_:Nf7bbbb997d69421a9788742039059736 . + "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments." . +_:N4a7bf760b6db4d1ba3355fa3fa5ae99d "MOP" . +_:Nd32e69c5cb88482c8177ed48dfc9ba08 . + "0000509" . + "amalik@ebi.ac.uk" . + . + _:N3747c03b654e4dd2bf6bc01d5e92ffe5 . + . +_:N22771823a3594304b5bf38d38fea81ae . + "false"^^ . + "^\\d+$" . +_:N946c1ab86ed146c9a3cdfe7a4b3832c8 . +_:N1b95267c480a40f095566f1894191ac8 . + "None" . + "602" . +_:N1c9e5ce2fbd941378a0611e3d8a79286 . + "https://identifiers.org/hamap:$1" . + "false"^^ . + "None" . + . +_:Nc04d65c6d17c4aacade086e676f6ba2b . + . +_:Nc1431de684b843f9b2e23173b3663944 . +_:N5f66ca86535f4746af4232bb1507438e . + _:N410724d5262243389f10dfc2b17d2ce0 . +_:Ne538eeff909d4f06ac7cf995b7c5f246 . +_:N4e6ab83244aa41ceb5181fe1bfffd0c0 . +_:Ndbc973e032a84cabaac640a6a04dddd2 . +_:N0eb55ec4396448b3b6334e76e6f0b1af . + _:N14d14e3eee3a4ae78e5746d36598413b . +_:Nd8707932d0e8475cbbcbdbbcfd2f41b2 "mmp.fun" . +_:N1baac742c9ad49eebae953193ccb4a8f . +_:N78dc477b14514923861def6b27bd6aed . +_:Nebfb3834e8de4bcb95d0b1f287b4615f . +_:N8da47ac6c9724597be39362a74741627 . +_:N7b51f1e0f55b428bb75982b3420d7bea "lipidbank" . +_:N9429df94794345c5a72b59727548b010 . +_:N8992e8edc9224c6d9f95c5fb1b27488e . +_:N2117d326d9554a74a9a0c534de46de44 . +_:N9317a57cf53746b4b32b0632defec679 "OGG" . + "0000062" . + "ftp://ftp.rgd.mcw.edu/pub/data_release/ontology_obo_files/pathway/pathway.obo" . +_:N0776bdf4abaa4e0f9f0dfc2582643dde "PSDO" . +_:Nb989893d31fd4facbd8134d089f0bba0 . +_:Na4f01d912e364f01b7f8c7dd820f3e1b . +_:N365041ba8d884a35b69eeafebb66be4b . +_:Nc228b05e90ea491c921b7af964f47358 . + "false"^^ . +_:Nf366671c3afb44f2b97cc6d586b308f5 . +_:N7ae193095b0d43f9bafd5472ee83a999 . + "http://www.yeastgenome.org/" . + "^\\d+$" . +_:N7256ea7096f24be392df8d2a45c95901 . + "40000617" . +_:N63109f81ba144f1cbd35c231fe1c329d . + "helpdesk@cropontology-curationtool.org" . +_:N7c384fbfb1d04a1eaa1fdda352f0a11d . +_:N390523c70a214560b15f42cdf612a585 . + "Tick Anatomy Ontology" . +_:N97c6bdb8047e41b880c056b44d561de9 "addgene" . + . + "https://www.ebi.ac.uk/ols/ontologies/co_321:root/terms?iri=http://purl.obolibrary.org/obo/CO_321:ROOT_$1" . + . + "^HIX\\d{7}(\\.\\d+)?$" . + "377550" . + . + _:N80bff3e13c5e41288ae890f663fecc53 . + "psidev-ms-vocab@lists.sourceforge.net" . +_:N3834e6238e6d45e6aba6b45f32b21c82 . +_:N6b606d80567643b6844227f5162841dc "ensembl.bacteria" . + "https://www.ebi.ac.uk/ols/ontologies/co_347/terms?iri=http://purl.obolibrary.org/obo/CO_347_$1" . +_:Nd05b0508ad72487c8e6a7b8ea798f7f9 "medgen" . +_:Nfca19da5d2cc4360bfd3272056bf2e89 . + "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank." . + "UDB000691" . +_:Nbafeb873124d42a885374595d65569df . +_:N61fe46d44a0348b58a178a9d6ac02292 . + "https://identifiers.org/dev.ga4ghdos:$1" . +_:Nbf2ead381b834506bd1c93b90b605d2a "P686" . + _:N0bba5aa79eb141dbae0ff4ab1e848447 . + "https://identifiers.org/ec-code:$1" . + "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups." . +_:N2c736a2917194d4a8529d4b59bdac0e8 . +_:N16784055d4f0408dabfc23308bfddabc . + "false"^^ . +_:N269469a9bd474b478eab394efaac8a2f . +_:N30620bc76862481384d7735e16c61852 . + _:Ne4c692d9f7de404dbf4a96a63b97e13a . + "^PAp[0-9]{8}$" . + "^PA\\w+$" . +_:Nc977f42979984b418fc3efca2d070f35 . +_:Nbdd66b6ba1af4401b9c194c560da6f4f . +_:N7639323a45cf4d31952ab46597c6d2d4 . + "false"^^ . + "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations." . + . +_:N9bd1d91961834d3fb38cf785dfa60aa2 "swiss-model" . + "0400109" . +_:N991ac5f9a9774815823cddf2440ee514 . + "^\\d{7}$" . + . + "00000268" . + "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes." . + "fernanda.dorea@sva.se" . +_:Nb3e43bdf576a427cbd4f0ae69a61b381 "metanetx.reaction" . +_:N145f0056e0ab4d5db4bbd88fe5448e9a . + "Genetics Home Reference" . + "https://identifiers.org/oryzabase.mutant:$1" . + "false"^^ . + _:Ne12a897ed43643daa0c8507d9bfa580d . +_:N388173c734e04915b1a46269608ab6ee "ORIDB.SCHIZO" . + "^FB\\w{2}\\d{7}$" . + "http://www.w3.org/ns/activitystreams" . + "^\\d+$" . + _:Ned5b0a610bda4b0d80132e8f51ca5d0b . + "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project\u2019s scope, material, objectives, funding source and general relevance categories." . +_:Nf451151cdc36483089764eb84e81792a . +_:Nd6d1a4cfac9a486fbf22867f2c363206 . + "false"^^ . +_:N19d01116c0f54598a775b358304a5a85 . + "PGOHUM00000289843" . + "HGNC Symbol" . +_:N11b1c25da383430c88c731293ed4273c . +_:N325431fe708f49e7b5d0450604963122 "ga4ghdos" . + _:Nbbc5c21da6904ce5b1359776169b3843 . + "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology." . +_:Nb41f2e48d2e14d31b830d0bbb18385d7 . +_:N559ec30784d6436d819eb07c2314164e . + _:N55c799007dce446eb8e04b5d4b8ebd79 . +_:N03c5436d9cdf42869e420ae9d29fa1b3 . + "false"^^ . + "Veterans Health Administration (VHA) unique identifier" . +_:N88cb00905c234988a6fbc1c27a4b70e8 . +_:N90e1b6296d3b465fadaa34eb45047a38 . +_:Ne7896cf685f14f12b98470f745d371f3 . + _:Nbc12c52a0c2049a3aae769723e67f0ee . + "https://identifiers.org/taxonomy:$1" . +_:N9ad5bab90521489eb2f67ab0f615d5ed . + "0000485" . +_:N0e36fbde5bf04dbea8fc67a2ab4ed6ed "POCKETOME" . + "^\\w+$" . + "http://sourceforge.net/p/mamo-ontology/wiki/Home/" . +_:Nde98f3e8254d4bb79611b229db311f7a . + _:N4adbe7f516a8422086c6b833cbc802e7 . + "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1" . +_:Nb59e10b8f4b241de88aead0e16bd50e5 "topdb" . + "None" . +_:Nccc01f0e36964b9eb7428856fe990b35 . + _:Nf8a02cf1098e42c2a999b49b5e1cb151 . +_:Nd64ac32b8b4c4409a1917090307e979a . + "^e\\d+$" . + "false"^^ . + "Spectra Hash Code" . +_:Nf8a4e935a6fd4c09b498930d44642abf . +_:Ndd0d12d9599742ad9f288954de40644c . + "Gene Ontology Causal Assembly Model" . +_:Nd774da32d2ab4afcbd95088220b47a06 . +_:N52820bd00d854df1bb1f1846d1ddef05 . +_:Nd6d3901ef77146c5a3ce5a118707ae95 "EcoCyc_REF" . + "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information." . + "^CL:\\d{7}$" . +_:N964777c09c55406392372aaa9f69beb6 . + "UCR00513" . +_:Nc0f48ce744b34fb2a4ffc9f601f110bd "bykdb" . + _:N5978367cb310406abea9498cae847d80 . + _:N7f235672351a4894b6417140f19edbe0 . + "The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes." . +_:Ndc4d598cd6da419c8cb5471a1de4cd6a "DRON" . + "None" . + _:N365041ba8d884a35b69eeafebb66be4b . + . +_:N015b494fa305448c86e2bcb132b5eab7 . + _:N23c25f0e7d5c41ce82ac20c6a97c2f57 . + "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains." . + _:N3e4cdc36d049458f8cce52cdd4a20c78 . +_:N493a61e1743d49eb9fabdb8f302a11ac . + "cp390@cam.ac.uk" . +_:Nf133c37b3c6547e69ffc4745c249187e . +_:Ncd7171f406934084af3afd5c32fe2410 . + "Database of validation results for ligands and non-standard residues in the Protein Data Bank." . + "https://identifiers.org/biolink:$1" . + "https://identifiers.org/orthodb:$1" . + "NCI Pathway Interaction Database: Pathway" . + "Beet Ontology ontology" . + "https://github.com/EBISPOT/covoc" . +_:Nb72b23f400f04e9a892b49bc339c045e "TRITRYPDB" . + "None" . +_:N05140ee6e3184478a134ca3148422fcc "bykdb" . + . + "^[A-Za-z-0-9_]+$" . + "^\\d+$" . + _:Ndd592b79c45b49c0b3f0ff7888e5c786 . + "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc." . +_:N631d26b02e154e229a15513dc1151c2e . +_:Ndd6bd5e7334d4f24a7c3f0f34a674cff . + "cthoyt@gmail.com" . +_:N1a268176bfde44faab0ae2ee66d61516 . + "74" . + "None" . + "nextProt" . + _:Nf781ba4d42be45f5a917392b880fbeeb . + "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]." . + _:Nb89cec5f53ea47dba47e2b1cc5e723fd . +_:N94052b3b7e0a404c9da6d1fcff3cfcc6 . + _:Na3e1224b196f40fd9f21ef0cd482d499 . + "PA447218" . +_:Nc8c280ea5ba84f1faea720abb402c55e "MycoBank" . + _:N263c9655958d46d99fd91409cc77ec75 . +_:N17f7ee79c8d948f3b2e54fce61d96dd3 . +_:Nfe8fd28e6a9449699164ed6b984f61c1 "COMPLEXPORTAL" . + "GCA_000155495.1" . + "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors." . +_:N7d979815dbf5468b91dbc5706ea92128 . +_:N09acafa1962646c5b4c3285f2cf60bfc . +_:N85401b5a825e4d9a994b15b50540cfaf . +_:Ndd127b9ef073421cb1d8e7e3598be65d . +_:N425f3ccf7e2c46f6abf9a54e5a480ef4 . +_:N0814801545304cfcaef94d6613788a33 . + "Wheat ontology" . + "^\\d+$" . +_:Nec013b679fb34d1689c15e57aad10d1a . + _:N75f8180bd21548cab83926236ab6bf15 . + "helpdesk@cropontology-curationtool.org" . + _:Nea8980a82f2a49b5b82c90dbbe2ff881 . + _:N7ce98b40f5fd447ca11b3b8c7dc7fd68 . +_:N05c74a7241fc4c3caa374c175cf71112 "facebase" . + "false"^^ . + . + "card@mcmaster.ca" . +_:Nbc68e66bc28e4fa2b3152cdfa2182137 . + _:Nb55c1549aacf4a4ebfa326cadbdee917 . + _:Nd0b06170313e4273bfdb47bbaa8ad097 . + _:N8f52e27e4cd7486c93b2d6b52c3ce47c . + "None" . + _:Na8e61fc3b9af4b038a994d1636edcac3 . + "MEROPS Family" . +_:N38a21ba401994eb5b15a986efd37caad . + "None" . +_:Ndbbf08a0f722427a96424925bbb74fc7 "UniRule" . + _:N73a0d744f49540c9bfc86b861b99100e . + "false"^^ . +_:N4580d59588024cf39f91202e8dade091 . + "MIMIC III Database" . + "DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors." . +_:N21c2f3a4260e4237a963eb45ee6b5d35 . + "^PO:\\d+$" . + "false"^^ . + "Traits and phenotypes of flowering plants occurring in digitized Floras" . + "00000001" . + _:N5edd1bbc7c214012a0b9604db570e231 . + "DragonDB Allele" . + "^I\\d{2}\\.\\d{3}$" . +_:N365504ed7b3145e99f7cd4d8c7fb6fb3 . + "https://identifiers.org/sitex:$1" . +_:N145f0056e0ab4d5db4bbd88fe5448e9a "VGNC" . + "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups" . +_:N8ecf4bd22f64462f97cfd81781346d37 . + "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments." . +_:Nefc6379ac4154f5dbb4f638c3451a910 "merops.family" . + "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene." . +_:Nbfda65f5ee974f4690bcdacf9835a135 "P2796" . + "false"^^ . +_:N3d614d4804384a46a9ae00a3b8780c20 "kegg.glycan" . + . + _:Na7715ab86bd5424a80ee6677a2e4b2ba . + _:Ne545a1af974c450a87f46019ec65e8c6 . +_:N94426dd100154efdb1fd9d2cbc451dde . +_:N145f0056e0ab4d5db4bbd88fe5448e9a . +_:Nd2c15222fefc42a8bc40bdb34c85b1f8 "MPIO" . +_:N85e9749827804dc0b936fe8ca12ea7c5 "caps" . +_:N3f46815f56a34b0ea2eebb347ae2172e . + "None" . +_:Nc38b7f252bb948d4be23058b5c034ecc . + "DIP-743N" . +_:N8d574d0645de448db7992734c2644e9f . + "Metabolome Express" . + . + "17:41223048" . + "None" . + _:N55e505922c42443e8c55c6b970637e81 . + "j.bard@ed.ac.uk" . + "None" . + _:N99d72295645a43b081d2bd862b138a38 . + "Rebuilding a Kidney" . +_:Nf487129af8264841b481d4f81e6e177d "did" . + "http://genepio.org/" . +_:N6787034b7b734a298703d2c79ab3d6a8 "bugbase.protocol" . +_:N53968c86dbd8451e84df728fdb1a6280 . + "https://identifiers.org/dbg2introns:$1" . +_:N90374d2c381b4a40ad3eb3e95eb37fc4 . +_:N8a171690f82e4ac9ba3835d975fe6783 . +_:Na56dc6b8a2f34a63949274a8a04f8bfd . + . + "false"^^ . + _:Nfae1094dd6c5436a8cce2f9b5c00443f . +_:Na95ca4a28e564c86884911f795a7e5a8 . + _:Nce01389a0a144c348e0e902093f673b8 . +_:Nba954ffb4abe42c9bae4fb9478d22466 "geno" . + _:N51baf21f72644761ab0d7f0cf940fdce . +_:N82463df2dee4495ea7d0d86a2d3d9467 . + "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process." . + "false"^^ . +_:N55807696cb6c40ed88db637f42279b58 . +_:N5b3defdf5e5a48e8a1994ce61a66505c "Reactome" . + "https://identifiers.org/paxdb.protein:$1" . + "None" . + "https://identifiers.org/aop.stressor:$1" . + "pierre-alain.binz@chuv.ch" . + "Minimal Viable Identifier" . + "false"^^ . + . +_:N932876cb55124ca490847a026e5fdbb8 . +_:N673ed1b2027b45ff8437adf7b08a0ce0 . + . + "Physico-chemical methods and properties" . +_:N446d72e7235a4d30bf17343c700aedfc . + "true"^^ . + . + "Universal Spectrum Identifier" . + _:N8c8d8931c9564a9ebe6a0e2b1af36342 . + _:Nf05fd9c782464f5584caaa70a6ac4d62 . +_:Nc0d833e9cb664195b674833b059ee5bf . + "Rv1908c" . + "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide." . + "https://identifiers.org/dictybase.est:$1" . +_:N9afd91d3f4274d38a303b281ae794191 . + "pgxbs-kftva5zv" . + _:Nf75cb8e6c76f44caa7e5258cd9822940 . + _:N168db5aa638a42f8801c8319f562791c . + "http://www.mirbase.org/" . + "Teleost taxonomy ontology" . +_:N67e000bbb58e41d199c0366eefc069d4 . +_:N8b937fee15c744ed8a92f6f7bbb44884 "BILA" . +_:N3464dc6632d74f52b5bbb85aa0d12aaf . + "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology" . +_:N37a0f1feab144a9fa80ba69e75be366f . +_:N7955b48d3a0a4efbb424e9510f5a4736 . +_:N8024341cdc1f4df485803716766f6083 "hgnc" . +_:N3db681270eac4e60a7321ca3064a2cff . + "https://identifiers.org/ecyano.rule:$1" . + _:Nde8afb9a390c453990123a06cfcfde5e . + "https://identifiers.org/rnamods:$1" . + . +_:Nd528415861074290861426500f875290 . + . + . +_:N56ee88f98f5246af92269006d0fe1ecc . + "Human Gene Mutation Database" . +_:Na191b6d58fcf4de5a6382761588654c2 . +_:N35889a42b15141dd848bbc2317573000 "EcoliWiki" . + "DisProt region" . + _:N0fc217b91d324527bef5a75168c74b34 . + "None" . + "1000" . +_:N8b0ced31dab145ffbe728d4bbeb46f75 . + "None" . + "https://identifiers.org/scretf:$1" . + "ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo" . + "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins." . +_:N1c427b1f26c6433c9135cc8a90a8c170 "P938" . +_:Nb62fc8a0d8a149018ec3efec57f3bcbe . +_:N51baf21f72644761ab0d7f0cf940fdce . +_:N361b1dfdf4dc49f58900a69216a19ed6 . + _:N1b06e0e75e0b4eb5868f507fb3b87416 . + . + _:N495d9d40d62c423cae1c00fb7322cb29 . +_:N74cd2639e0ce4033a9bd409eca77b3f6 . + "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced." . + "balhoff@renci.org" . + _:N8fb2c50fdfef475e933e1052b9f417ec . +_:N5d476f7d09d744288291067eddd1326a "UO" . + _:N33a9a21d88fb472ebfa383158d894276 . + "http://phytozome.jgi.doe.gov/pz/portal.html" . + "European Genome-phenome Archive Dataset" . + "Circular double stranded DNA sequences composed" . + "CTD Chemical" . + "0002989" . + _:Nc9382f5090b44f158a7caa22ed4ff326 . + _:N015713ab9c334a90809010d27ef10169 . +_:N4f17083da64e4156a05f2d24d1d19281 . +_:N295bb89bcf58416b943fa56488f29472 "orphanet.ordo" . +_:N241ee78c18b74149bc646dcced099be4 . + "101" . + _:N7a7c46fe5fbd4092bdf2af3429d887ea . + "Global LEI Index" . + "edam@elixir-dk.org" . +_:Nefc6379ac4154f5dbb4f638c3451a910 . + "https://www.ebi.ac.uk/ols/ontologies/$1" . + _:N139ae57b88ad4cfab078c5661d71ff31 . +_:N0fc43559df264091b9787636850b7688 . + "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession." . + _:N4696a2cb81d04488acfbd975a3bba171 . +_:N8055a26056cd4555861eac63fe027ada . + "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession." . +_:Nbc3e1ab951f844db9ad59dbb2ea058e2 . +_:Nd84ef26ed0ce4dd481cf9d5ca7b1aa4a "EMDB" . + "None" . + "None" . + _:N89b1ab1d5ad24707b3e19f0dd394f7e6 . +_:Ndd88c16b045b408491f60144bc56e36c "ONS" . +_:Ncadade484e1e4435b403a745c811b71d . + _:N062fcc6442d34416834508977b8fcda4 . + _:N7256ea7096f24be392df8d2a45c95901 . +_:N7c0f88826f534403a0a6875565ddf259 . + _:N1e03cc8d249b4d1cbbd88e7229d77faa . + "^[0-9]{1,7}$" . +_:N4fe206b6aa764807abed9ee164ef62b6 . + "false"^^ . + "Wikidata Property" . +_:N8775bd81d8d34abca1586d9d249afc6f "SASBDB" . + "johnbeverley2021@u.northwestern.edu" . + _:Nf8667e22d6184eda8d4d09a197efa5cb . + "NONCODE v3" . +_:N9ebc03e027e14672b42f82fddca4ef43 "NEUROVAULT.IMAGE" . + "OPB_00573" . +_:N10a41bd70c3b464287e4638739522678 "SMART" . + "false"^^ . + "uc001rvw.5" . +_:Ncee57d3136ae42a4b2870b660297a66b . + "None" . + _:N95bfcbaa98da4a81aac735adbb676fa0 . + "090201" . + "None" . + "false"^^ . + "false"^^ . + . + "false"^^ . +_:N7d31d5a689194d8da7b2a6bb65634dee . +_:Nfc3ab88a7805431b847c97c4e1937d79 "CMPO" . + "false"^^ . +_:N8d552fe43519487494f546c67a976418 "SAO" . +_:N19c5906a718642d0a0b283f1513f3d37 . +_:N78e3b8a5166344c4b6f8835fb1d3733a . + _:N1ab4affee697458089fa3db3b3f346d5 . + _:N7ae193095b0d43f9bafd5472ee83a999 . + _:N9c205263ac8d4d5a86322852eda2d271 . + "https://identifiers.org/mmdb:$1" . +_:N55c799007dce446eb8e04b5d4b8ebd79 . +_:N49fa65d3fcff42babbae7af9851fc241 "PHIPO" . + . + . + _:Nbe49d29a577049cd9bb1ed28db6a8cf7 . + "None" . +_:Nc59370b34e744ccea662634c9e097e37 . + _:N1221925c5eab4bd985c5026cf78bbbe2 . + _:N3c0a6a09bf6f49fea5846e46cf512bd3 . +_:N5600aa5c4c5c47df9f89976d248485d4 "P4926" . +_:N22428da90b604d75a6a5ee5baa4c7175 . + "268" . + "false"^^ . +_:Ndac119c395c946b2bbe5696592b45203 "FYPO" . + _:N4bc88d1ca1dc49dbada17959b03f2aea . +_:Nd70f3c5e24c64cb5be22ae8b9b2fd5b6 . + "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration)." . +_:N0440b39504d4428a91836eebaae6bd7a . + _:Nab2602af8f344e0ca8627af6dba72ad7 . + _:N24547db28e3e453e840cfe84166fb3e6 . + "E-cyanobacterium model" . + "false"^^ . + _:Neded352f67324ec98daed98c0f272741 . +_:Nb4f5f41b435142b6ad96be59c0a0d9d2 . + "LNCipedia" . + "PIR Superfamily Classification System" . + "MetaboLights" . + "topalis@imbb.forth.gr" . +_:Nfd7276d52422422ab1d47e1bd70123e2 . + "None" . +_:Na874cdfca1ab4ab9bb97b82ed7adc1c7 . + _:N6b449dac218d4985a96c0d38bb7eb2ba . +_:N11c317245c0b429d94b1e0d55cfe3551 "gpmdb" . +_:N388173c734e04915b1a46269608ab6ee . +_:N3b33510e97774c2582946300c5886115 "RO" . +_:N22bf6720df6341ed98118af48a0bd464 "OMIABIS" . +_:N86d73947ecf44134a7a7935f3aaa1f0f "HTN" . + "https://identifiers.org/worfdb:$1" . +_:Nca16cbfd166c4d66b844cb14f4eb2961 . + "None" . +_:N424756c79f534aaeb40e173ab5597e77 . +_:N21351ed635974c38a5ce1fc6a56e3c92 . +_:Nb3e99a7a716f4de6909cb89333a376fb . + "COc1ccc2c(c1)OC[C@H]1[C@@H]2C2=C(OC1(C)C)C1=C(C(=O)C2=O)[C@H]2c3ccc(OC)cc3OC[C@H]2C(C)(C)O1" . +_:N37dcd37869d04075ac14a42ce6c901ad . +_:N80951b1ab1434ca197c942369315103d "MINT" . +_:Nd5d9234491fd4687ac4b7b69c7b20dea . + _:Nc18b47f9bbb648688c30178207fbbae1 . + "Resources used in the semantic web, based on https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml." . + . +_:N1c9e5ce2fbd941378a0611e3d8a79286 . + _:N806d6c3ea0a347f19ed4a102ffa1f4ac . + "https://identifiers.org/MI:$1" . + "None" . + "^\\d{7}$" . + "https://identifiers.org/aspgd.locus:$1" . +_:N3b53f60f9cef4f0997e39c1f1633dbc0 "icd" . +_:N91541985c3cc4936b30a976f5bb3fc5d . +_:N9c205263ac8d4d5a86322852eda2d271 "bdgp.est" . + "false"^^ . + "Gene:2200934" . +_:N7d91c9d8b77f4506a09b6f999f6388a9 "UNII" . + _:N15345c852cec43f5be22c82af37189f2 . +_:Ndc814b6c4409407ca1a438cdcef5ed90 . + "AOPWiki (Key Event)" . +_:Nd2f43dfbafaa407eaba1351a0e0a5941 "zfin" . + "An ontology of phenotypes covering microbes" . + "None" . + _:N2e2552dad58147e6854bdcbe947f8eba . +_:Ndbc973e032a84cabaac640a6a04dddd2 . + "false"^^ . + _:Ncb9917b58df64b37b8404efcd69abb80 . + _:Nea524d2309e64b668303daeb4e073b02 . + . +_:N36ff76a49e9e4184afdc3a8b64d840b2 . + "false"^^ . +_:Na9b0ca190dc24b04b5d90e0ef28c65c8 "jcsd" . + "Confidence Information Ontology" . + "Natural Product-Drug Interaction Research Data Repository" . + "Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi." . + "^\\d{7}$" . +_:N93e020b3b5b846d88bc89ca190b65e29 "GENATLAS" . + "None" . + _:N3c10d4d54d6447318304eb8fc54219c9 . + "bgee@sib.swiss" . +_:N365c44d91dcc4082bfe118bf28b7c8b7 "CDD" . + "https://github.com/OpenLHS/PDRO" . + _:Nae0448afed2d494580e0ada3a10d8440 . +_:N55574a62bcaf4dc19cdf503f5c4010d4 "pina" . + "aaeA" . + "https://github.com/infectious-disease-ontology-extensions/ido-covid-19" . + _:Ne6b18db105c74a33b4472b8d24f4a638 . + _:N8578c234315947d38e493eb987891e4f . + "false"^^ . + . + "Anatomical Entity Ontology" . + "https://ega-archive.org/" . + _:Nd1ef5287d43b4735b089f37bfbcbc8c9 . + "TR0000001" . + _:N3d954942b7bc450cacba12d1878179f5 . +_:N63109f81ba144f1cbd35c231fe1c329d . + "false"^^ . +_:N1057f322324644d6b0168eb7de5317c9 "ENVO" . + "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors." . + . + "None" . + "MaizeGDB Locus" . + "alejandra.gonzalez.beltran@gmail.com" . + _:Nb1a31193f6594c5cb036977036931d54 . +_:N0832ad41adae406cac7e57d6393b4f1f . + "false"^^ . + "false"^^ . + _:N3bc1c0e5312d4195962f9b22cc395f81 . + "ScerTF" . +_:Nb6f4f0ad4f4b487a83dce9d8d5a2ab51 . +_:Nc4c3ef5b746b46b5b4086305149dd82c . + "Biosapiens" . + _:Nf1b61650628e4965afd67d3a9466b6ab . + "Mouse Developmental Stages" . +_:Nb151f50c72eb4811acd8eb0511a7ca7d "HOM" . +_:Ne797098ef77246fba87a7c8c90621126 . +_:N773f189b13954bf4a38aed85d9f11402 . + "^FDB\\d+$" . +_:Nd32e69c5cb88482c8177ed48dfc9ba08 . + _:N3ad59e42043d4cf88f9a2ce1b9b6f16c . +_:N84d31a6ecd654f559198d686457e6c41 "MassIVE" . + _:N57296dfcb5bf451393b113c3da9ffd3d . + _:Nb6f4f0ad4f4b487a83dce9d8d5a2ab51 . + . +_:Nee49069bff224f16ac594e27da966619 "IDODEN" . + "^\\w+$" . +_:N0fdcd9cfc3a340a2bec94f2e2ffbe211 "ecyano.model" . +_:Nbdd66b6ba1af4401b9c194c560da6f4f . + _:Nb313682f943d4b84a9b2e65bf297a7e2 . + "^[A-Z0-9]{6,7}$" . + "false"^^ . + . +_:N87eb0b5036c747289a8e5013ed70deae . +_:N0202c6819a224e6992d168869a8bd9f9 . + _:Necb0716988364380941ce17185e58b1b . + "http://www.w3.org/2001/XMLSchema#$1" . +_:N4dbb1d5c927e44ef900c84c36b3f544d . +_:N76f029a55cdb447891ac2e4b710d2c55 . + "L000001" . + "false"^^ . + "false"^^ . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs." . +_:Nefd104b4ed66483b85014041abb9615b . + _:N7ec8c3c83a4c4308ba28b74ddccde4b7 . +_:N935c8868a5a1424ba049aa0bda278232 . + "Golm Metabolome Database Analyte" . +_:N91541985c3cc4936b30a976f5bb3fc5d "co_324" . + "^\\w+$" . +_:Nafaa018f048e4907b743bd676a4a66be "gdsc" . + _:Nf56303bf62b344ebb78e07074d3bf902 . + _:N224045c014a04fcbbad1dd50565f9147 . + "https://github.com/phenoscape/teleost-taxonomy-ontology" . +_:N05c74a7241fc4c3caa374c175cf71112 . + "Ontology of units of Measure" . + _:N65b031ee5c70414a8a8bd2c47c95e24f . +_:N1aeb4b46bce24125929922c5625d3b92 . +_:N455aac4eb2cb4c0c95ffb5e8051ac4fa "kegg.drug" . +_:N47b1fab38204459284bed1caf5eb8469 . + "https://identifiers.org/molbase:$1" . + _:N52aa22a0bbda4d4f920831f665516a1a . +_:N9298512f00bc4ae98d4eb2a4773b1b6e "CCO" . + _:N67bc7924f2d046d2bf3656c781cb4e04 . + _:N7f29f7dfbd0d4d2388b655569d7632f7 . +_:N5a6857b4e7eb4cac8810ad2c7bfa3ebe . +_:Nd97d18aabab949708189cec6a5e385f0 . +_:N7ce98b40f5fd447ca11b3b8c7dc7fd68 . + "Human Developmental Stages" . +_:N0462cd92567c40feab2dd5fd0c59431a "WB" . +_:Nda2e9e6278eb45cbbdc2f05f9c56b3cb "treefam" . +_:N8ad4af909dde4fd38b42e59b8e44f009 . +_:Naee6ad67a64a4d8dbc7cc569f247b349 . +_:Nef961de87487406f8789c84d0cd7e574 . +_:Ne708ff73125e44b9bfae9022cffaf1d0 "biocyc" . + _:Nfaafd64430884b9a8e4fb34878b458a3 . + "^[0-9]*$" . + "1h68" . +_:N5d27c91cd94a49ad86cd580600ee90bd "eggNOG" . + _:N6d2ef8f9fa534234801ed36dee17148f . + . + "^[0-9]+$" . + "Cambridge Structural Database" . +_:N4c72a7db43ff4e2cbf37c3b25198892a "P6689" . +_:Ndd0d12d9599742ad9f288954de40644c . + "https://identifiers.org/mipmod:$1" . + "https://identifiers.org/PW:$1" . +_:N7171b6fee26943ca941e38c075dfa824 . + "https://identifiers.org/oridb.schizo:$1" . + "false"^^ . + "None" . + "false"^^ . +_:N2ebfcd2007f648a2b31f385c3ed0932f "VT" . +_:Ndd127b9ef073421cb1d8e7e3598be65d "orthodb" . +_:N022626926638431081aeb826a3c9f368 . + "entiminae@gmail.com" . + "false"^^ . +_:N64bc2774be114757af571adf4abe4116 . + . +_:N3e282782fda74058aa0144fbaf911686 . +_:N48f78e6d0955474a9e3220fa58c5b55c . +_:Nad46ffa23356460d92cd5cd943527457 . +_:N1b2445c3055748458f71ee0fd4b2e751 . + "None" . +_:N1e03cc8d249b4d1cbbd88e7229d77faa . +_:Ndcdc5bf451b346409bdc8b16a8085630 "erv" . + _:N2ec7786e25ca4f5090642f21b068782c . + "https://www.ebi.ac.uk/ols/ontologies/co_337/terms?iri=http://purl.obolibrary.org/obo/CO_337_$1" . +_:Ndeff8991108b45f3967d4b0e7bc55f5a . + "VegBank" . + _:N3f89482dbae84bc4b2255ea879614575 . + "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$" . + "None" . + "^\\w+:[\\w\\d\\.-]*$" . + "None" . + _:N03992d583fed410284fd121b2572b270 . +_:N0fc217b91d324527bef5a75168c74b34 . + "https://identifiers.org/mmmp:biomaps:$1" . +_:N697593c66ca449168b5dc2171fe6d531 "rebase" . +_:N7e92188114174ec3b8adaf7338e8210b . + "CryptoDB" . + "1000560" . + . + . +_:Nc8379d73c2744a94a75dfe1f6c8d9c2c . +_:N8acd5f30c38b40e284415df8c8b9fdec . + "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition." . + "None" . + _:Nf1e2e126374c498c86efba0d07be6da4 . + "None" . +_:N13e9ce673dd44009bdebb01de73c1609 . + _:N9f7c0478198346d39dc8c95d2dac92ae . + "None" . + "^Gm\\d+$" . + "None" . + "false"^^ . + "DDB_G0267522" . + "https://identifiers.org/idoo:$1" . + "None" . + "https://identifiers.org/psipar:$1" . +_:Naac3a8c6f0ca4ee9ad40730b54f97080 . + "None" . +_:Ne895005481e5471eac010fbc02f792c8 "umls" . +_:N520122c3a7054fae86addd4f5c2da621 . + _:Ned26b5c664664ed9a4bdc0bc7298c4ec . +_:N68f0b6b0f167418ba7e9cca96697dd04 . + "98" . + _:Na0eb689746654836a952d90a24f46732 . +_:N703970fb68b14074a2a9ec741c0ba37b . +_:N6b72f1a1cee04a2394cb1228813c3f85 "VECTORBASE" . +_:N84a01dd6e2984a7e903fd1e2eea80fc3 "SUGARBIND" . + _:N28cff03e97b44a23948e18af00ada044 . +_:N9050a6861ceb4822adfc9440378b818d . +_:N2f98a5fb6d244d438e0fb6cc41a3e313 . + _:Nd2c15222fefc42a8bc40bdb34c85b1f8 . +_:N005d24db993144cc976862b884b3cffa . +_:Nd0d7266945db4001880bd492ef3ac469 "GLYTOUCAN" . +_:N089449f5ff1a45dfa3a7c8548852281a . + "Fungal Nomenclature and Species Bank" . + _:N21f3ccb6f4f94eeea08443ca8fbf62ea . + "Prosite database of protein families and domains" . + "KEGG Compound" . +_:Naf2474d9e6fd44e3a11f4ef6b3299840 . + "sbgn.er.level-1.version-1.2" . +_:Nf66632b779704032b01cbc263a231b98 . + "https://identifiers.org/biomodels.kisao:$1" . + _:N19a48f9595764b28aed3af11c380e908 . + "https://identifiers.org/wb.rnai:$1" . + . +_:Ndd127b9ef073421cb1d8e7e3598be65d . +_:Nb7626a5c5f9e4518bfc600534cafcfd1 "PdumDv" . + _:N5f61c955b8e844d8880129ef1306fe32 . + . + "Data Catalog" . + . +_:N31ab09e6ffef4820beddb631d8a4c00b . +_:N5480f5bd5ac1473d9165dec3481b08bc . + "fernanda.farinelli@gmail.com" . +_:N60a2a37d481348aa9be47d1629e99c36 . +_:Na935e6378d53423581f76a21e73cfb11 "lbo" . + "https://www.w3.org/ns/prov" . +_:N706e7bd775eb4012a9c697836b0dc83a . + "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO" . +_:N3e831678ad264fa69ea324f3254f6f01 . +_:Nfa29d24b50b14399a6c3538dd1096fdc "NAPP" . + _:Ne76919bead074849ac7560db0fd06a5b . + _:Ne8e6b1adcfcb458897cdf3b951ddb515 . + _:Nf769bdef2ab7490690f238527a3e9b83 . +_:N84d31a6ecd654f559198d686457e6c41 . +_:Nbd2e633ffdf5408eaf049dbfbfd50587 . +_:Nc85b5255ecdb4fe98fafb8e9fe8b1039 . + "http://www.theseed.org" . + "false"^^ . +_:N36facfcefe684f008ba7b6dc4cc9b9df "dbProbe" . +_:Ncdb0dc213bec430b9c64fd9aa2189794 "ECTO" . + "None" . +_:Nab6e191a05414027bf0a70d9ae37b3f9 "ECOCORE" . + "false"^^ . +_:N6b9a1df959aa4c40b01ff8ef0cfe133f . +_:Ncba76dc7bb414affaf0d590dee42022b . + _:Neaf560210b5040838a0c1de8526b4341 . + _:N91fe0c3a6ab046cb8bb2c0a38e4e1246 . +_:Nc18b47f9bbb648688c30178207fbbae1 . + "63250" . +_:Na6bbcd7f96e54d48846f8d96eb075b93 . + "https://europepmc.org/article/CBA/$1" . +_:N9429df94794345c5a72b59727548b010 "TXPO" . +_:N88b5761891ec45b68acfea329c86db6b . + "^\\d+$" . +_:Nae0448afed2d494580e0ada3a10d8440 "erm" . +_:N53cd495bb3894b1cb95c5e424ece5545 . + . + "None" . +_:Na626d5741925463084496898ea55ecb9 "dragondb.locus" . +_:N3798789ca4be472698f5066bf5666666 "MFO" . +_:N4feb3d3c57e54db182fac3d8c17a93a6 . +_:Ne998f0e823ed4f81a98b7b55dc6e8b49 . + _:Nc7c104e343694608b6271fe54a9a124c . +_:N4ff4ed80fd664d078a0ea31c8175d80b . + _:Nb0227452710445a1a5790688d5189c6c . +_:N8d65c06c4ba048c5bef45d6ec4ef9a6e "biocatalogue.service" . +_:N7308c3182ab54067bb0b8db847c7c477 "ViPR" . + "https://identifiers.org/minid:$1" . +_:Ndab967e586d74964b4fd1918fbd470fd . +_:N88b8610a175f4760832869bca9fc66bf . + "false"^^ . + "https://bioportal.bioontology.org/ontologies/$1" . +_:N855bcb5ba5e441a6b0f12f515aa84521 . +_:N83bb299c24b94eb19b289c9e8582c092 "EnsemblFungi" . + . + "false"^^ . +_:N3f46815f56a34b0ea2eebb347ae2172e . + _:N19c51fa3ed6b42c2b2ff855e45181dde . + "None" . + . + _:N09afc57ab0af443fa7b02e4a5c522dd7 . + _:Nc3f9ae8848ba48b29a645af611cda5eb . +_:N73fac5ece78b419eb2110780bb9bd95a "LINCS.PROTEIN" . + _:Nfb14c5b77e8f409b807fc76cfdc72dfd . + "https://identifiers.org/FMA:$1" . + _:N7b51f1e0f55b428bb75982b3420d7bea . +_:N7e5174e78782421c9a665062df0095a6 "JSTOR" . + "https://identifiers.org/autdb:$1" . +_:Nbf2ead381b834506bd1c93b90b605d2a . + "MULT_4_VAR1_bovine" . + "false"^^ . + _:N05d7983d1b2a42f785a4cca5cd36416f . + "None" . + _:N4233096d45a745d8b598f4d66839d9d7 . +_:Nf43178f152ec46eb85b442d91030d08d . +_:N552d2e802ff14b3ebf6fbaece4567398 . + "false"^^ . +_:N9f7c0478198346d39dc8c95d2dac92ae "HPRD" . +_:N160cb4698ff044ef9e1a24c740f08a3b . + "https://www.ebi.ac.uk/ols/ontologies/ceph/terms?iri=http://purl.obolibrary.org/obo/CEPH_$1" . + _:N80093443863a4eca874755cb85ef4489 . + "false"^^ . +_:Ne8c41bc5e23e48e2a4ecc48a55bde7f2 . + "false"^^ . + "^\\d+$" . +_:N14bc2b7fd2b448dabb6650eae297b2dc . +_:N4351a393b1684bae9589629b17443d9f . + "None" . + . + _:N61a449542a1043a59e4f97d368f0984c . + . +_:N974e88f25ab145538c92bd0567910d0c "OBCS" . +_:Nce49de24f5db4abca9c19c7eab750f49 . + "Datanator Gene" . +_:N5a42d254f58b4b3e885d42e7296140d2 . +_:N8556a1dc378c4711b9f51efd09ca87d5 . + "An ontology built for representating the organizational components of trauma centers and trauma systems." . +_:N436edd5aa6fd42c7bc21583cb3cdb2f6 "PROTONET.CLUSTER" . + "None" . + . +_:N74262afb39af447b9110268f32216abd . + . + "rbca.jackson@gmail.com" . +_:Nf489ad15476949ad8bcf32122ebc1d1a . + _:Nb8b60dc00e9c4a729e546e811c6cc1ff . + "false"^^ . + "YeTFasCo" . + "^\\d{7}$" . +_:N33dcedc900cb498986a25ae8712a9587 . + "http://www.psidev.info/MOD" . +_:N4875c9bb414d4e0fa0dbf590a9fd7d6d . +_:N1137cffd29aa453ea2c4a95c747317a5 . +_:Nde238c6e5dc9469fb9643ee5a08e13d2 . +_:N3464dc6632d74f52b5bbb85aa0d12aaf . +_:N5fe7e41a246944c7a35465ecc078744f "yrcpdr" . +_:N37a0f1feab144a9fa80ba69e75be366f . +_:Ndc5f848b7f4e4156a2ba11d86b4120fc . + . +_:N8b19bd4efd2b4c459beeea39c1cbec2c "MIM" . +_:Ne7c195ddfa6f4bb4bf5b90b721df1f33 . + _:N40809d3dd3f7452c9331a978ec2cc42e . +_:Nd528415861074290861426500f875290 . + "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites." . +_:N7f5a30b414964015809a1dff862fff1e . +_:N6a6ae0c5caf4414096395eb1282d2b67 . + "None" . + "false"^^ . +_:N843d74558c2f4dafb5e0354613e11923 . + "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. " . + "^MA:\\d+$" . +_:N52e1b1b710cc4459af606dd5754fad54 . + "Glycan Naming and Subsumption Ontology (GNOme)" . + "Pathway ontology" . + "^MI:\\d{4}$" . + _:N6ed7ff8feaca40c8982b393b2be02640 . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_$1" . +_:Nadd7f09834de4844b50fe7789dc2c57b . + _:N41b25c417d2447c9928cf5f496553225 . + "Toxin and Toxin Target Database" . + "helpdesk@cropontology-curationtool.org" . +_:Ne3c2eba9f0874b7da11bf6f883171efe "KISAO" . + "LOC_Os02g13300" . +_:N51baf21f72644761ab0d7f0cf940fdce . +_:Nc1e87ec9e0d8472ebc93f2cc48d0719b "encode" . + _:N1897871aea424a27b560107be7cbd992 . + "An ontology of Drosophila melanogaster developmental stages." . +_:Nc15d9bfb7f7e4d76bae20e42a424f22b . + "false"^^ . +_:N77962d865c434b5f93bd4e7f1d48ecb9 "ICD9CM" . + "None" . + "0110974" . +_:Ne11d4ccd13984d038985d6546688aa47 . + "None" . + "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. " . +_:Ndeefffe214284e008172ddba12f0e5c1 "pmc" . + "https://identifiers.org/soybase:$1" . +_:N057de2c7e82f4cb8bbdb0b4afae0f631 "co_333" . +_:N7b51f1e0f55b428bb75982b3420d7bea . +_:Ndce6b5e61e674eb98226d729554d527d . + "^\\w+$" . +_:N188c1bf636304dceb8060ca89aac0d41 "CIDO" . +_:N6bc4d6b3a8904edd88460f7c01926fe0 . + "75121530" . + . + "None" . +_:Nc8c280ea5ba84f1faea720abb402c55e . + "https://identifiers.org/imgt.hla:$1" . +_:N58a41cc007c0482b9b2f6aa5f9ed9a16 . +_:N5764acd03d954329b54ee5f1b40e9807 . + _:N469d2bfe1e914423afd45678443693c4 . +_:N0fc43559df264091b9787636850b7688 . + "None" . +_:N5d476f7d09d744288291067eddd1326a . + "RSC3" . +_:Nba954ffb4abe42c9bae4fb9478d22466 . + . + "Human Pluripotent Stem Cell Registry" . +_:Nb73f04a5fc6c4d27a6807072bb7a6c04 "aop" . + "false"^^ . + "false"^^ . + "https://identifiers.org/hssp:$1" . + _:Nae18cad1239c455cbfb166cd0baad183 . +_:N789af802fe314b03b5be160efcf68d0d "unists" . +_:Na3d0761e095243109fb08b5a38f69ab3 . + "https://bioregistry.io" . +_:N44ef22124839436e93e45e447bdc7507 . +_:N8e7659d6ca0d4fd9ab9282f6ca966727 "dbSNP" . + "helpdesk@cropontology-curationtool.org" . + "^\\d\\w+$" . + "http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut" . +_:Ncee57d3136ae42a4b2870b660297a66b . +_:N0ec9c4ab425541cdb20a0252c6a1f18d "ARXIV" . + "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits." . + "^[A-Za-z_0-9]+$" . +_:N84d31a6ecd654f559198d686457e6c41 . + _:N1cdc3d391f934bac8d4ea029b3ddfcb0 . + "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively." . +_:N44b13f16f5aa4dc783e1d4cbaa77e165 . + _:N30b300e7c34342358193c71c787d5330 . + _:N5e15cbbe011c4875ab716028285dfd9d . +_:Na76f7e7ba8004083a22786074dce1e7e . + "false"^^ . +_:Ne59833372ce74bb4ac673537b80b9d7c . +_:Nb6eef29bb1924ca9a085eb3051c0da0f . + _:Nccc01f0e36964b9eb7428856fe990b35 . +_:N5d5b5652f2234437bf8cedfd310b4c51 . +_:Nc3ca6ab2f76c4e93bdc3c6a1953e1c06 . +_:N696535c8979045f78f645bbf3ae2090a . +_:Na10d57773a2749f1a79935ab1e871353 . + . +_:N19c5906a718642d0a0b283f1513f3d37 . + "^ML\\w+$" . + . + "None" . + . + "false"^^ . + "^SCV\\d+(\\.\\d+)?$" . + _:Nd850a9f26d9b450da83d7b7eb36c6b46 . +_:N7d91c9d8b77f4506a09b6f999f6388a9 . +_:N197e4d79a0d741d696f5e906f7f9ae42 . + "https://identifiers.org/mycobank:$1" . + _:N146756b2d93e48b3abb5bdbf9d01a4d1 . + "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications." . + "^CHEBI:\\d+$" . +_:N5d3e54ee9275493eb281ccf3bb801037 . +_:Nc25eea459f024e49abc1cfbc32fd6159 . + _:N808a59fc699a4343bb7c0814f83963d7 . + "^\\d+$" . + _:N3a65681a124c419ba1724c760b113980 . +_:N3fde1a2294ad4d058c7ce8686cd64374 "PO" . +_:Na904fc53370340c2abb1f74baa9f22d4 . + "ENST00000407236" . + . +_:N06caa60605644b2481de5c77a3f142c4 "cadsr" . +_:Nf200b2564eff40b3be93325ad266b84f . + _:N86d4b6804f924bd596c81793faf61026 . +_:N6acf7910060a452394b1eb3af515ca70 . +_:N7e5174e78782421c9a665062df0095a6 . +_:N3eff830c91044e7091b8176d8669c35f "bugbase.expt" . +_:N9e3328d4ee5e4edda7e54d688de69a31 . +_:N8defb2b4eda940dcac186a308c631b4a "VALIDATORDB" . + . + . + "^\\d+$" . +_:Nf755d864e0be4bd89147233a7844ff38 . +_:Nef0af9916c2745c89eece2269cdd3bee . +_:N3815c7cb5ce945858b0d9a2661f2f5dd . + "false"^^ . +_:N9194679d2a764a5c8855251fa503a0cc . + _:N54baafdd6440408d8929019bc020d3a5 . + _:Nb2e57648972948cd976e286a900a446f . + _:N31b3d2c07dbc4d36841d9a4dc0be646b . + "https://identifiers.org/bdgp.insertion:$1" . +_:N509c5b646d2d4b19a2d91d8c11281d80 . +_:N3a4a9f1c33854a08b831ec65787b47ba . +_:Ne6bafaab2a0045d9ab0cc28681134c58 "BDGP.INSERTION" . + "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1" . + "false"^^ . + . +_:N1baac742c9ad49eebae953193ccb4a8f "UM-BBD_enzymeID" . +_:N2e57a4f05cd44194b24678991345b487 . +_:Nbc12c52a0c2049a3aae769723e67f0ee . + . + "Ontologized MIABIS" . + _:N8d8de026f9cd404c8c3e4894b9f890ae . +_:N71081f432436440bb4aa224ad49d19ee . +_:N72d57f6c41a84bba96ff18f35531cc19 . + . +_:Nd63e1ad9eb3441d4a47db97cf647022f . + "The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium." . +_:N02b2bff400124f3d8cc411c4ff55e9b3 . + "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments." . + "^PW:\\d{7}$" . + "https://www.ebi.ac.uk/ols/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_$1" . +_:Ne708ff73125e44b9bfae9022cffaf1d0 . + "Cell Line Database" . +_:N2108c32a22e24fdbba8581aa967735ac . + "https://github.com/EBISPOT/amphx_ontology" . + "http://www.atol-ontology.com" . +_:Ne797098ef77246fba87a7c8c90621126 "MFMO" . + "b97957" . + _:N6bb922e3c2fe42628987e94acd67249f . + "None" . + "^[0-9]+$" . +_:N7ec8c3c83a4c4308ba28b74ddccde4b7 . + _:N8defb2b4eda940dcac186a308c631b4a . + "bsu:BSU01340" . +_:Nc83abefd57b84ac58f5708610fce3d87 "P557" . + "^\\d{7}$" . + _:N9e2a778e8f70486b93b5f9f11305697a . + "https://www.york.ac.uk/res/thomas/" . + _:Nbc7d50719f8d45e5ac2fecbab07a8730 . +_:Ncb3317a53ab0404c9ad4a30571b05718 "KEGG.COMPOUND" . + "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features." . + "A database-specific registry supporting curation in the Gene Ontology" . + _:N32daa80066094e5ca987b2dabf837278 . + _:Ncaae98bf242d4ce2958146d76c9077c8 . + "A structured controlled vocabulary of the anatomy of mosquitoes." . + "None" . + "GLIDA Ligand" . + "A0A009E7X8" . + "KEGG Glycan" . +_:N15345c852cec43f5be22c82af37189f2 . + _:Nd84a6d38db024ba8bb8563eb9a169f67 . + "https://www.ebi.ac.uk/ols/ontologies/omrse/terms?iri=http://purl.obolibrary.org/obo/OMRSE_$1" . +_:N6bf09f73e34c47e08468794a2f9b1ee4 . +_:N78d525d2c90e47ee955188b2378f4e34 . + _:N6a1ef76f4be248d4b33f222268ad117b . + _:N881c18eecd944ea3858f4a228961dcf3 . +_:N73db0f2500494390aed18d8bf53dff4f . +_:N5e0288c4a84d4da0a04b5d03d10e6b8f . + "None" . + _:Nb989893d31fd4facbd8134d089f0bba0 . + _:Ncea739ad97a44702859931fe08b93cf6 . +_:N2dca6345da8143568c84744f4918eea9 . + "false"^^ . +_:Nd3cf6c2f04f94b15bd4d12fc6ddf55b8 . + "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information." . + "false"^^ . + _:N439218aaec214380b719c999fd554f2b . + "https://identifiers.org/vmhgene:$1" . +_:N66fd7a4f63a347a19e93038411bd6527 . +_:N25b95c19c3574f67bd0f186bcc133784 "TAXRANK" . + "104674" . +_:N8b3e91b707c141b0a8717e5fd5693bb2 . +_:N4caf14be1a5a4ae1ba2349d19437d12b . + "false"^^ . +_:N909cf920cb5a4bd4a382c80868ff31bb . +_:N776b4781d4df427d9ea4477f4663d65c "FOVT" . + "Molecular Signatures Database" . + . +_:N79fdeb9a9695470597f92046f8a21eee . + . +_:N4e33bec2935245e49ba76a0f40376907 "subtiwiki" . + "http://www.cropontology.org/ontology/CO_325/Banana" . + . +_:N728a5511f3124f91996843d10a0616d4 . + "^\\d+$" . + _:Nb962958d4f9c48748ef382af8d90adac . + . +_:Nd930711a60094fd9a11fbea0755928c6 . + _:N33caaa21e4004b489216baa837dfa8d3 . +_:N820269b40e62466faecbbca02b104ccf . +_:Nd24e10410a464a41b8c051dca91133a9 . +_:Nd0d6b48ee9224b3e9553d02608faa3f5 "SWO" . + "None" . + "0000024" . + . +_:N46e39a8d4fcb42838e3fb0cc0da28c21 . +_:N773f189b13954bf4a38aed85d9f11402 . +_:Ncee57d3136ae42a4b2870b660297a66b "sitex" . + "false"^^ . +_:Ndf629b36a2554fff9c907e08249a5b56 . + . +_:N267a71fbc3c4488aa9a798d65281fe90 "BIGG.COMPARTMENT" . +_:N727421d5da524dfeb480c12a7d29e8db . + _:N34b639061bf543eaa12f958ac31d5c21 . +_:N52aa22a0bbda4d4f920831f665516a1a . + "false"^^ . +_:N8508ab4c454543fcaf5ab3c699277b78 . + "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'." . +_:N63cc32604acd4d01b2845db259e7b50a "DBEST" . +_:N4796522668eb4124aedaa60b2086b711 . + "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences." . +_:Ne83ac43832174917903a4d9e9f020d04 "CTD.CHEMICAL" . +_:Naedd779b64fd4e298aa3a03b634ff236 . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/co_358/terms?iri=http://purl.obolibrary.org/obo/CO_358_$1" . + _:N750490d050564bc4b597cd8d938c5428 . +_:Ne26dec5ea2d04a29be75e76e1894782c . +_:Na006aa5f3d0340069b474ff458e170f7 . + "A Systematic Annotation Package for Community Analysis of Genomes" . + "None" . +_:Nad37c7e18f3f4109a8c46f2d2bc01edd "cattleqtldb" . +_:N809c3ab6cfc6451ca994fcfbb2525c24 . + "None" . +_:N935c8868a5a1424ba049aa0bda278232 . +_:Nc82bcfa378474e28b59688ef4a3802b6 "PSO" . + "Apollo Structured Vocabulary" . +_:N6c447668eb1d4253ae76b1d0c6b9b417 . +_:N57997db450d3466ea9fc812bf2e7dff6 . + "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt." . + _:N06caa60605644b2481de5c77a3f142c4 . +_:N7783f44a6d784105ac75d3f824fe461f . + "https://www.lgcstandards-atcc.org" . + _:N7671decde6854dc286a318d53e2b2fdb . + "https://identifiers.org/mesh:$1" . +_:N7a62370addc946f29138fffdc3b4a519 . + _:Nef0af9916c2745c89eece2269cdd3bee . +_:N90ae0a0b9295419987325b82d7a0f302 . +_:Nae92a973fa0b4768b0074d618ffd05a4 . +_:Nc57bf558223342329242414f4f47860e . +_:N831fab1deb604b208bc32f85f65d8f87 . + "None" . +_:N97543da0a3994c94b8d3de9cd7c5ce5a . + _:N116f10c0e8d042fba0b907d09f4cde7b . + _:N57a7d67e4a9b425b9b8cd7319931c020 . +_:Nd97d18aabab949708189cec6a5e385f0 . +_:N84ed0582955442d5b1315d403485c567 . + "Google Patents" . + _:Nf68fbf715ea143e39cc54c45dc393a25 . + "false"^^ . +_:N5baa1db724c543b689cd650c476cb2f5 "subtilist" . + "Akt_PKB" . +_:N4ce2f4635fab4a868be9c690a0046706 . + "SMP0000219" . +_:N1b11e70fdfe446f2bf2f14b4ab69bca2 . +_:N0440b39504d4428a91836eebaae6bd7a "REBASE" . +_:N801fe1b6fe7749e6ac97035baaef3f7c . + "^\\d+$" . +_:Ndd8427094a264af5bd90879585b7bfa0 . +_:Nc763a70f58794bdab2c0dac66d81425d . +_:Nd3cf6c2f04f94b15bd4d12fc6ddf55b8 "mycobank" . + "Gramene protein" . +_:N7c43fcb7f154490cb0495bc410e2baef "P5501" . +_:N42a3b62cf10a458ba4f14936f997345c . + _:N3246ef4e40f04c57ae143e0a0d4aa1fb . + "false"^^ . +_:N8d3e7b76c5364aa095d4169d98051503 "medgen" . +_:N255b9f496e7f49b290ecd346c2149a60 . + "9781584885658" . +_:N418d2b792918482ba91b8b79b5fc8a87 "PHOSPHOPOINT.KINASE" . + "None" . + "https://identifiers.org/MOD:$1" . + "CPD-10330" . +_:Nb952f46674e541c2a9ab1e56dcadc022 . + "5fce9b7300001250" . +_:N093988891fe64128b8fc54f4046aeb49 . + . +_:N8267bc3ae53e459a83927f06f6ba180d . +_:N8411e26602a74c909df525e9fdc1bf80 . + _:N66df0b60dcc249c4b430a47db0d2948e . + "^\\d{7}$" . + "None" . + . + _:N47ea57624b624ee0829c9e490a9c9689 . + _:Nbeb7096cd66049d39ec197d6d1c1892c . + _:N79627d04fc054db195c347e9acc6e1fd . + _:N717ca6d2814e4ef1929a38e9d5017c8b . +_:N806585aa73de468485660ac890b4f0b0 . + "A collection of biological attributes (traits) covering all kingdoms of life." . +_:N363562ae495c440695526cc2d8d5d78d . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" . + _:N14c08727ee9f4d11bae8c77e6225b180 . +_:N0911246b45e64e239992abce57091627 . +_:Nc8379d73c2744a94a75dfe1f6c8d9c2c . + _:N5805a07526644a559ae7587ff6827d5a . +_:Na894eac69df94b76b6663f35fb2a30dc . +_:Ndcdc5bf451b346409bdc8b16a8085630 . +_:Na60bc7f9c104447b8209f39eeff20392 . + "helpdesk@cropontology-curationtool.org" . +_:N4b6cb01fa90c4430a535695b862d039d . +_:Nf0b2b3668f1a4cd9b2665ef3cc3e4af3 "OBIB" . + "TRQ" . +_:N49e58125d4434ef2b3e5383a54c9a8df "funcbase.fly" . + "https://identifiers.org/gold.meta:$1" . + "false"^^ . +_:N0fd2f9ecf4884319919b5525e8c778c7 . + "None" . + _:N79102903d6984b6e869d233f5faa8f51 . + . + _:N560685b9f7fc424c9431c313d33289ae . + _:N40c0ccdd28b64deb99f1f929d4714554 . +_:Nfe777c3588ab4d45be1875b9a35dbd59 "ENA.EMBL" . + _:N83b18efb1f7f47edb3bd167d8a1908ad . +_:Na52b277bee7b441e8e70b55d1f12cf58 . +_:Nc2ebbc050dc14e04804c1b51c127eaaa . +_:N3b53f60f9cef4f0997e39c1f1633dbc0 . + "false"^^ . + _:Nf5dca0c53a32426ba5624f5432cd9803 . +_:Nebef1f010e9242b69cef11a94df57b27 "po" . +_:Nf70a267aad174f9f8dfe8f659f5620dd . + "Prefix Commons" . + . +_:Ne85f8ee935324c76bb4314960782df7d . + _:N22dca894660a4e458bd02ad1da2e2630 . + "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology." . +_:Ne59833372ce74bb4ac673537b80b9d7c "probonto" . + . +_:N2acae0a97d594b03bdee5cc83ceb7c39 . +_:Ned26b5c664664ed9a4bdc0bc7298c4ec . +_:N2f98a5fb6d244d438e0fb6cc41a3e313 . + "false"^^ . +_:Nee0aed4acaa34bff835617b18cbd9805 "gwascentral.study" . +_:N557095b2021c4d5c97d2b8fafd1371a2 . +_:N57179732e4ab4fa7b09cae451e6903a7 "MICROSPORIDIA" . +_:Nd66811e5c0ce405f80e26845a04c7464 . + "false"^^ . +_:Ned01603c34294e689fceb23847d85619 . + "http://xmlns.com/foaf/0.1/$1" . + _:Nfb71b28188a446ab9b80b12fa2c77eac . + . +_:N701a88fb0cb54790bec1d15af99a2384 "UM-BBD_ruleID" . + "None" . +_:N665f7872300c48058c17b4f561f1d23e "atcc" . +_:Nc228b05e90ea491c921b7af964f47358 "LINCS.DATA" . + _:Nd9415648a82b4e3e82c88bb6a567a7d7 . + "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI." . +_:N6fb39844caf14f31889e6b0f22091aa2 . +_:Nc410bd1772e241b1879847652cb4ebae "pr" . +_:N7411f1e9e29346f98db96fc1d53c782d . +_:N96a23e2293d14402b3ac7d59eb60cb9d . + "None" . +_:N131f6f5e08fe41ecaae9f74fb8cb9710 "OAE" . + "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information." . +_:N9d1c2262a5994b258750f78377039482 "validatordb" . +_:N47a348212f2a4b7495278dc674705399 . + "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier." . +_:N49e58125d4434ef2b3e5383a54c9a8df . + "0000632" . + _:Ne739ba7d49e44a29b5ca52526c37e5f4 . + _:Nfec4e4a6ee8546e8be40accd68f26d7e . +_:N1473bedc00334b659476b3600cf85468 . + . +_:N972bcc57b56442b3835a806b8400abea . + "International Classification of Diseases 11th Revision" . + _:N35d35dd969724cbca25ff7040dbcec99 . +_:N08b35bbdff654872b45d9176b150b818 . + "GPM32310002988" . +_:N8edca9bf35e242e98110972591f8eced . +_:N5abb71e526df4844b17eaa97cf83c0fd "bgee.organ" . +_:N983068dbae6b4fecb088a17bdbc75c62 "PIRSF" . +_:Ne526831af9e14f78be026653faa083fa "IMGT.LIGM" . +_:Na44e8919263947d29b4e68f2e7c8b135 . + "^\\d{7}$" . + _:Nfff1e4ebcb7f45b9a5953f18143de8c3 . +_:N5449cb69b67a4c0ebbc05baa6f8eec8a . + "^MOD:\\d{5}" . + _:N782cbba78b5c45a48c792de0021c06f2 . + _:Ne226a73011ea4994b717b628edf842ac . + "5046" . +_:Nbd2e633ffdf5408eaf049dbfbfd50587 . + "false"^^ . + "Manually curated collections of resources stored in the bioregistry" . +_:N5c5f8928bd43420dbdec197584fcac95 "ctd.chemical" . + "The Ontology of Genes and Genomes" . + "^\\w+(\\.)?\\w+(\\.)?\\w+" . +_:N8fd0c0ed6e83418687a5ca2a443e2277 . + "https://www.ebi.ac.uk/ols/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_$1" . + "Healthcare Common Procedure Coding System" . +_:N40809d3dd3f7452c9331a978ec2cc42e . + "P00024" . +_:Nb29d0f49f7384b8b8ed0d8d4df18ded5 "hinv.locus" . + _:N71ac685141744792b168de63c2609c13 . +_:Ncba76dc7bb414affaf0d590dee42022b . +_:N2995bb78b7ca4d1e9bc972b63705840e "datf" . + "https://abrc.osu.edu/stocks/number/SALK_$1" . + "https://identifiers.org/scop:$1" . + _:Nb4956f7720474bedb9d9363bc8535f97 . + _:N9209fa1bf1f54d978b038d3ecf853153 . +_:N4a7bf760b6db4d1ba3355fa3fa5ae99d . +_:N6e9c3ea82da6409fac3fbb945aac0769 . + _:N19c0df0681754690bee2276edea3e4bd . + "FuncBase Fly" . +_:Nf7c3d868ac454e8ba97fe2ec93ef91ab . +_:N70338455269d44b1beea469adfefa964 "BIOCATALOGUE.SERVICE" . +_:N5f35e9790af04c9bb0da94160b2adebc . + . +_:Ne12a897ed43643daa0c8507d9bfa580d "myco.tuber" . +_:N62ae50df640c4a3a9f4daccc844f0547 . + "false"^^ . +_:N333a076b604c4ab482ac3ae9685a2504 . + "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases." . + _:N8775bd81d8d34abca1586d9d249afc6f . + "PF11779" . + "false"^^ . +_:Nb62fc8a0d8a149018ec3efec57f3bcbe "rxno" . + "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules." . + "http://agricola.nal.usda.gov/" . +_:N67d2c4575be7452884a26b5fb1a343f3 . +_:N9ff5f89284db4a33b4c4757d133e9dd5 "co_358" . + "Metabolic Encyclopedia of metabolic and other pathways" . +_:N2f06741179c14e30bbc9ebb6d0fce262 "polbase" . + "david.c.blackburn@gmail.com" . + "Q0VCA6" . +_:N3cb7b7e87a6943f2bb1aa31dfdeb8f39 . + "^\\d+$" . +_:Ne758d9770ac44554a2f95eb05f8d7d76 . + "false"^^ . + _:Nc431ae60df9a4a41817a6fa522f428f2 . + "Kidney and Urinary Pathway Ontology" . + "false"^^ . +_:N9a5be245fc17403fa4655bc23e5a1949 . + _:N225d8dca04f24ff2ac7464d8bffc2103 . +_:N323a5d970ed4491e8dc17d29b54938a9 "HDR" . + "http://geneontology.org/" . +_:N0ad5f03fdf8b49caae82472cdff34b9c . + _:N112c471e69ad4dfcab2b0174e41fe25a . + "https://www.ebi.ac.uk/ols/ontologies/upa/terms?iri=http://purl.obolibrary.org/obo/UPA_$1" . + _:Nd28873daafbb41d190839b38fd44ca62 . + . +_:Ne3cafdab25b24746b4c79a6af752cc91 . + "false"^^ . + "^OSR\\d{4}$" . + _:Ne642bd06a6b248c993edd23c0c43cf86 . +_:N98dc1f55a303402c8e42b081b6522fb8 . +_:N1df975d11dda4597b6a52b8655851ad2 . + _:N1acf114c89cb4abe803f870e8b979bca . + _:N2a3eb5dc7c1d4ad3aab2523cfa36dd9a . + "None" . + _:N0ad5f03fdf8b49caae82472cdff34b9c . +_:Ne8c41bc5e23e48e2a4ecc48a55bde7f2 . + _:Ndf629b36a2554fff9c907e08249a5b56 . + "^m\\w+$" . +_:N14bc2b7fd2b448dabb6650eae297b2dc . + "https://identifiers.org/disprot:$1" . +_:N8e6179158be2458b8707e509f7f0ae8e "GA4GHDOS" . +_:Nf03c55fac7ee41789821f227e4ed8a30 "FAIRsharing.6wf1zw" . +_:Ne6b18db105c74a33b4472b8d24f4a638 "TRICHDB" . + "Integrated Canine Data Commons" . + "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval." . +_:Nd4f13eba43a9439d8bf5b986cdfa0222 . + "Variation Ontology" . + "https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl" . + "Anatomical Therapeutic Chemical Classification System" . + "Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica." . +_:N172e9923a2064c978fc42ba3b1f3217e "NextDB" . + _:N4570892026054af997ebc5af8dea465e . +_:N5a42d254f58b4b3e885d42e7296140d2 . + "true"^^ . + _:N53627565aee547febdccf3c44b09694f . + _:Nae4585bf5d8640a88dfd63c590ba70ea . + "https://identifiers.org/genefarm:$1" . + "MatrixDB Association" . + _:Nbb68dd2a52014aa5b048f59da59c1cef . +_:N250373cf4f67409b9f3dc8bef6f9e931 . + "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations." . + _:N614394e07cb94771a7a89cafc09eaadf . + _:N2d1348fb25ba4fef86c0633ddf2871ed . +_:N2c736a2917194d4a8529d4b59bdac0e8 "treefam" . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene." . +_:N5e1b98bc344f461ba19d489cfe227335 "SIDER.EFFECT" . +_:N52fec8905ad74f48b5ffc646500ecf94 . + _:Nddc5591f60a243eb891c2c22d17aad4c . + "https://www.ncbi.nlm.nih.gov/gtr/" . + "pylebail@rennes.inra.fr" . + "Mental Disease Ontology" . + "https://identifiers.org/wikipedia.en:$1" . + . +_:N065c8d4b17f34b7ebb306b731394ae34 "SIBO" . + "^\\d+$" . + "5.1" . + "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease." . +_:Naefa37cac9cd48e7923e4294a55e978f . + _:Na9467ae1f86c4b2b9a95ba8582100fc8 . +_:Na2560cc8aeff43b08982d5b615486ad2 . + _:Ncaa8161738004584ae77962f7ecf65e4 . + "None" . + "S1" . +_:Nc921a2d2555e456da17b5721278c12b1 . + "chebi" . +_:N13d9dbcf3f5745e1b489eb0c3abada20 . + _:N6acd567fcba447e59b54e241305f9e00 . + "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data." . + _:N5591cc074ff34bacb64e5405ad176dcf . +_:N937ad05322344107946eaf05b36e3dcb . +_:Nae1f4bdb6050425e8603ab357a27190f . + "None" . + "http://ecmdb.ca/compounds/$1" . + "false"^^ . +_:Na325059a1bea497f911bdc0d49e347fb . + _:N50cc8177dd704c59bffeba0d9bcb13ee . + "https://identifiers.org/microscope:$1" . +_:Ne0414767a77d4517ae56839c9b744329 . + "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records." . + _:Na006aa5f3d0340069b474ff458e170f7 . +_:Nbc7d50719f8d45e5ac2fecbab07a8730 . +_:N91ace8334a294aa398c2a713e21fa948 . + "alanruttenberg@gmail.com" . + _:Ndbbf08a0f722427a96424925bbb74fc7 . +_:Ndce6b5e61e674eb98226d729554d527d . + "The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books." . +_:Nbeb7096cd66049d39ec197d6d1c1892c "BIOPORTAL" . + . + "^[A-Za-z0-9\\-\\/]+$" . + _:N37dcd37869d04075ac14a42ce6c901ad . + "false"^^ . + "^MF_\\d+$" . + _:Naf0a157f1eb9449bbf8883541d40fb3b . + "Identifiers.org Ontology" . + _:N3f46815f56a34b0ea2eebb347ae2172e . +_:N6fb39844caf14f31889e6b0f22091aa2 . + "0000983" . +_:N40c0ccdd28b64deb99f1f929d4714554 . + "100101" . +_:Nd64ac32b8b4c4409a1917090307e979a . +_:N94421bdef26f4ad18f93c9df9e2e70e2 . +_:N30f201166c8e451d95a262fde94d15cd "dailymed" . + "https://identifiers.org/prodom:$1" . +_:Nbc44e2bba07242e6b444d31aafe98d0f . + "56586" . +_:N74c690ba4a9348db9e21695da63acada . +_:N7ab0d869c6ef41179deeb74760deac4d . + "BDGP insertion DB" . +_:Nd842022fd69a40d28d75224b6c33fc40 "P665" . +_:Nfec4e4a6ee8546e8be40accd68f26d7e . + _:Ne73a56f469ad4e368997179def7cfbd8 . + _:Ncd534b92355140fd895f6cf2126ef60b . + "false"^^ . +_:Nf2276b7895ce49eaadfe35f0676015f0 "oostt" . + "System Science of Biological Dynamics project" . +_:Ncba8f9df0033412f84fcc18df8abab97 . +_:N09a5bf4ae4fe4bdb8d031f0d712640af "fplx" . + "false"^^ . + _:Ncf36da17a8df457fb7b67b1004112d67 . +_:N59c602ec148447768beb5586d407b2fd "MMUSDV" . + _:Nf5bf8136ffe7461d95e6a28c86ad0ee5 . + "^\\d+$" . +_:Ne06d395c01a24e829777658a2b7b7534 . +_:Nd1792c902ef14e6380eb65dede96e971 "P234" . + "https://identifiers.org/kegg.glycan:$1" . +_:N44b13f16f5aa4dc783e1d4cbaa77e165 . +_:Nb4adbfb194134a6dab7f1c8af6b071c6 . + "https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo" . + "false"^^ . +_:N3173319686db41d1beb6a6623af3f821 . + _:Ncbc378964c284b64b04379b7d2a4f250 . +_:N1894dc0ed22e4b8794222b29a3ec45b1 . + . +_:N8819ed19a5f748888ab5297325bdc00d . + "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative." . +_:Ncbc0b45c7da4482493fb037cddfadf27 "t3db" . + _:N188c1bf636304dceb8060ca89aac0d41 . +_:N7403f3e7a90f400f8717999ec2a8e5ec . + "Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens" . + "None" . +_:Ndc5f848b7f4e4156a2ba11d86b4120fc "envo" . + "https://identifiers.org/myco.tuber:$1" . + "false"^^ . +_:N61a449542a1043a59e4f97d368f0984c "ICO" . + "None" . + "None" . + "http://browser.planteome.org/amigo" . + . + _:N3a032929c1df4e47a3d4989bd6f7e028 . + _:N05f6d331fc014c70ab92098693faca1a . +_:N37b65e688c914774b047e5901ec4804c . + "The Food Interactions with Drugs Evidence Ontology (FIDEO) represents Food-Drug Interactions and underlying interaction mechanisms described in scientific publications, drug and adverse effects databases, and drug interactions compendia. The ontology builds on previous efforts from the FoodOn, DRON, ChEBI, and DIDEO ontologies as well as the Th\u00E9riaque database. This ontology is maintained at https://gitub.u-bordeaux.fr/erias/fideo, and requests for changes or additions should be filed at the issue tracker there." . + "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms." . + _:Nd64ac32b8b4c4409a1917090307e979a . + "None" . + "https://identifiers.org/lincs.smallmolecule:$1" . + _:N5d6c16ea970344718a391d7540ba7317 . +_:Nf24359857419468c88bdc7dd7c69e377 . +_:N7658294214fc4051b05ad5d5c11d2454 "SEED" . + . +_:Nbe1fdcfca90d44e184da720b748d2d61 . +_:N8e626bc42bbb40ce8aadc2472162692a . +_:Na904fc53370340c2abb1f74baa9f22d4 . +_:Nf1b9402988de4c75944dfe50a4c4cabb . +_:N9607944cca1d451cb53d0e34fefde91d . + "false"^^ . + "https://identifiers.org/ARK:$1" . +_:N494e99930c234c71ab686d373ce1832d . + _:Nbbc212293c174933abac640da15960c0 . + _:N53847fc234244905948e07a9ffefe165 . + "https://identifiers.org/ricegap:$1" . + _:Ne141d76c648e4e42813d0349137f62d4 . +_:Nf1aeb81346384a96958e165996de4faf . +_:N8f8b9758e164488297563d218a319351 . +_:N89ecc392a94642438a2aa9b57419a392 "vido" . + _:Nca4770a331934a9d8efc1e6b24f51711 . +_:N0f338ff81db24e72a3707176351ba4ec . + "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology." . + "false"^^ . + _:N241ee78c18b74149bc646dcced099be4 . +_:N6f29b2fe8af5477fba9a3fc73b5324a4 . +_:Ne7c42210ca994460ba3dacc1c36aec92 "EPD" . +_:Nfc3ab88a7805431b847c97c4e1937d79 . + "https://github.com/ApolloDev/apollo-sv" . + "false"^^ . + "https://identifiers.org/oci:$1" . +_:Na3789ffd6a9d498a85a282ce00dc2f8e . + "2h6o" . + _:Nabad437312b2484ebf923b430ff59075 . +_:Ne7c42210ca994460ba3dacc1c36aec92 . +_:Nd4c761c6c7dc4b2ebfd69b6065856ac4 "DUO" . +_:N127201fe304d4276b93546dd233f9218 . +_:Naae20bd7d1de499ba003001c306fb7a2 . +_:N8ad70a18e3e84627b57a22830d6af161 . +_:N3568d52fafd3450bbdce6fe569f64d5f . +_:N725967693a2547549370205befcd2dc5 . + _:N49c1fd816a3a4899bdc150b8feac23d7 . + "Publons Researcher ID" . +_:Ndac119c395c946b2bbe5696592b45203 . +_:N93db6d1ee4a147b09d556cd89f5e29d2 "BindingDB" . + "https://identifiers.org/neurondb:$1" . + _:Nd6457a3350794b458ce4c557f066df19 . +_:Ne468082d34f940d6884454c6356e0d25 . +_:Nc9285dd3bea341a4919ee9021cfcd25d "ped" . + "http://www.semantic-systems-biology.org/apo" . +_:Na0bdfa4a175f44fa9e1fb8952f242f54 . + "false"^^ . + "LinJ.20.0070" . + "638309541" . + "http://stato-ontology.org/" . +_:N5978367cb310406abea9498cae847d80 . + "https://identifiers.org/abs:$1" . +_:N3e34e079a5274b909682181fca951e57 "pharmgkb.gene" . + "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions." . + _:Ncfda8f9bb4ea47278c38053aaea79b92 . + "robert.hoehndorf@kaust.edu.sa" . +_:N7895364633cd4d83a51bedf952e7314e . +_:N5ff5a89750ae452495906ad2c09baa1a "SYMP" . +_:Na771e336556f4b2fb5eb4630a9424736 . +_:N6f311f9d52294ba4800c86a5dbde5dc2 "exac.transcript" . + "https://identifiers.org/mirtarbase:$1" . +_:Ndd592b79c45b49c0b3f0ff7888e5c786 . + "false"^^ . + _:N55807696cb6c40ed88db637f42279b58 . + "^TA\\d+$" . +_:N26a7cc3a64ca4a229a0a125450fb1a45 . + "https://github.com/aellenhicks/htn_owl" . +_:N79f9c5ca81ec4a09b46152ba3676db08 "cdpd" . + "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma." . + "https://identifiers.org/gramene.qtl:$1" . +_:N509871f15f0f4e2da2e7c91601585810 . + "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information." . + _:Nd1a86837bf2d4d16b7665d9033e150d3 . + "^\\w+\\_\\d+(\\.\\d+)?$" . +_:Ne06d395c01a24e829777658a2b7b7534 "AISM" . +_:Nb95b9bbf48fc426698235588eae3e4d7 . + "BatchelorC@rsc.org" . +_:N143a47c3a9d24a4c8ed42cce2b7ec9ea . +_:N0c5c6f13dba04e61aa41e35c5d77c367 "otl" . + . +_:N51b9555d52774d41be34b2033225166d "broad" . +_:Nd8b214182fb8404c8d1be69a6c3423f3 . + _:Nd09f04b4adc64cf880e693d03603511b . + "Food-Biomarker Ontology" . + . +_:N1acf114c89cb4abe803f870e8b979bca "ena.embl" . +_:N1a04ab50220047f4af0293e609a4d4a7 . +_:N47ab278a23ef4431bbc212d37b2cffb4 . +_:Na3e1224b196f40fd9f21ef0cd482d499 . + _:Naa10a171a2014a8b90a6efa2f30f2938 . + _:N5b99e180583541b4af8657f1aed8b756 . + _:N469b76f3473447609730cca7ec847bb6 . +_:Ncf35b4e3993b42efa7a8db18e0b46e87 "HSAPDV" . + _:Na2abe485b2ca4444b51e680ef2f89df9 . +_:Na8eef67650b0413c90e64bd79158af6e . +_:N6c3436fa2da046cab046c30cfd23ccf8 "co_357" . +_:N19fb37367c634f30bb8c15ed0a8647f8 . + "2GC4" . +_:Ne46307d4457d4a6caf0529b102ede6bf . + "None" . + "H-InvDb Protein" . + "^NX_\\w+" . + "[a-z]{3}-[a-km-z0-9]{7}" . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes." . + "None" . + "None" . +_:N1ebc4df1cc5647698ce84e1dd3d6bc97 . + "https://www.ebi.ac.uk/ols/ontologies/clyh/terms?iri=http://purl.obolibrary.org/obo/CLYH_$1" . + "https://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_$1" . +_:Nfe0d784c5d4c4295928021e68388dcbd . +_:N495d9d40d62c423cae1c00fb7322cb29 "JSTOR" . + "9008500" . + _:N020a5d3deadb4e73a36e27cef2228de8 . +_:N1729355bb1134c17b527435d7ac2aee5 . +_:N599fbc7b08e54f45bf0ba3f5740b3f02 "gxa.gene" . +_:N7a26b0dde44c4a01a35029dbd29c0385 . + "None" . + "25011" . +_:Nc4ed6289c3a14b80906d5571b50818ea . + . +_:N33d553c4864d4830906847c738808686 . + _:N4d349fd5393642cc9cb06cd449a5898e . +_:N1d524366a9b64a93afddc655c297ebbc "UBERON" . + "http://www.semantic-systems-biology.org/apo" . + "The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex)." . + "None" . +_:N2d4dce4058d741618b9ece3ad2df4671 . + "https://identifiers.org/genecards:$1" . +_:N49268ab2df614ebfa4fa473feeef3f0b . + _:Nc8dcd652c91f46be9698e18322908dd0 . +_:N0a1df3559a394cb8a947f1afcc6bc47b . +_:Nd84ef26ed0ce4dd481cf9d5ca7b1aa4a . + "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands." . +_:N388bcdc34fb940bbbb5c64eba3eb2b44 "SPD" . + _:N859cbe91c08d4f4c81c509eef996d8a3 . +_:N0f35ee7982034b658a0e32b16ac8a16e "CTENO" . + "^\\d+$" . +_:Na24c4e905acc4a7d82d3d2e6815c4f56 . + "https://webbook.nist.gov/chemistry/" . + _:N1095f176851840d19ae18c45b21225d2 . + "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes." . +_:N27e969ef47a44281a75fbc72157ca550 . +_:Nea36752324984e5abac9e503c0126c32 "OGI" . + "https://identifiers.org/hprd:$1" . + "Os01t0883800-02" . + _:N60c6d1686ead4178bb552a11fc890949 . + _:N66f493e467bf4c589bf70c3a132be9ca . + _:N8bb4b517eff642769334931eedc89a0d . +_:N7a62370addc946f29138fffdc3b4a519 . + "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" . +_:N798b0047b2604fcba86c66560a9608ca . +_:N7955b48d3a0a4efbb424e9510f5a4736 . +_:N0cf601d17637477b8fa8b54949a008e9 "KEGG" . +_:N67443bb5b82346b4b8273495a126f3c2 "ICO" . + _:N50b4578135e541599ab0fd660b003eb9 . + "http://metazoa.ensembl.org/" . + "https://www.reactome.org/" . + "https://identifiers.org/cas:$1" . +_:N96d50ada165f43239347a3911fef3a96 . + "36" . +_:N47ea57624b624ee0829c9e490a9c9689 "RXNO" . + "https://www.ebi.ac.uk/ols/ontologies/cryoem/terms?iri=http://purl.obolibrary.org/obo/CRYOEM_$1" . + "true"^^ . + _:N947dc11790d04d2a82a9b44fcf8713e7 . +_:N659bd0ba929348f781fd662863058a2f . + "false"^^ . + "https://fairsharing.org/" . + "https://identifiers.org/dip:$1" . +_:N9e72d2843b104ba1b9cb86244f48f898 "bgee.gene" . +_:N26e172894ff04af3bfda4b79688d7f12 . + "https://identifiers.org/mw.study:$1" . +_:N0c072d5c954942d3977b0fbe41acb490 . + "https://raw.githubusercontent.com/obophenotype/human-developmental-anatomy-ontology/master/src/ontology/aeo.obo" . +_:Naedd779b64fd4e298aa3a03b634ff236 "EPD" . +_:N88b8610a175f4760832869bca9fc66bf "metacyc.compound" . +_:N79e05f406b514aad900187fd228270a9 . + "false"^^ . +_:N13a0ac307c294ff9950cbd9917f7580f . + "None" . +_:N31e97ce1c06b44e6a5bc5e9b10d802fd . +_:N3099ae174b3e47068c0c77789abd0ed1 . + "http://www.psidev.info/groups/controlled-vocabularies" . +_:Nd7e2c1828ceb4748af084ef363732e1b . +_:N5b7e71e17c1f4549ac4207d03ecbc799 "PRO" . +_:N12ef5f510cd44885b31b5fa46b533fa7 "LABO" . + . + "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments." . +_:Nb952f46674e541c2a9ab1e56dcadc022 . + _:N497341331c4747e998a19ac709517dc0 . +_:N301e4070a3d942b1b4e35d4ed95d8170 . + "Homology Ontology" . +_:N6d2a02f923b247fa85f6bcfb0fcec18f "GENO" . + _:Nc778a49f67714f3abee54c5565d10982 . +_:Nb415e3f46a784bd3a81f5790298424b6 . +_:N0210baeaa3a14abc8adcd29b8cf8031f . +_:Nc4024776fb7648dcbcec67770a01c4e2 "JCSD" . +_:N48ca195bbdcd4015979f43e949089b42 . + "SABIO-RK Compound" . + "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier." . + "Rat Genome Database qTL" . + "DisProt" . + _:Nd8694eb4e3db4e0da68c04ba48a2d13d . +_:N47b311b0f4304d4081f38ef3111f4cc9 . + "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$" . +_:Na5052cc091484ab1ad8b15db0350eae5 . + "https://identifiers.org/img.taxon:$1" . + "false"^^ . + _:N0f1b3873aea24d2789cf486e57647e10 . +_:N6278c313b2e6425f82ffd6df7fe725cb . +_:N325431fe708f49e7b5d0450604963122 . +_:N39f1fabf4ec74f9880c43e30e6a18312 "pato" . +_:N3de3ff078c054ce7a6cacbba245a5200 "sabiork.compound" . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" . + "http://www.yeastgenome.org/" . +_:N020a5d3deadb4e73a36e27cef2228de8 . + "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$" . +_:N494e99930c234c71ab686d373ce1832d "RHEA" . + "smp-m3w9hbe" . +_:Nf1f8553106be48cf88a28c1a74925371 . +_:Nf5eef5c7957e412f98300ce9c34320d6 . +_:N2cb98ddb0b2649b1a8f7b2036dbe883d "sbo" . +_:N09239cf8262c4eaf9e2386a97faadbc3 "norine" . + _:Ne0d3aa9422f442c7aea1876b0b69c3dc . +_:Nd0d7266945db4001880bd492ef3ac469 . + _:Nd0da5d91b8e94cee8ba5fec4962e2436 . + "Ant Database" . +_:Nf627ce1c76f04551aaee7d159344902a "ascl" . + . +_:N100e507cf33945c38379b493a6f42103 "glida.ligand" . +_:N707812ac3439442fa52c56ce09fb5ca1 "BIOMODELS.TEDDY" . +_:Nb9db43753a944e438f46a49cf0f49600 . +_:Ne5fb57a24d7d4d1882e841971b4d995f . + _:Nc6692d044e634beab8a1f0d1e9adbe45 . + "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets." . +_:N6e02c3b2f7f9423bbd0f453754a89970 . +_:Nf15decb833154cae87f3f4d07e15aa74 . + _:Ncb3317a53ab0404c9ad4a30571b05718 . +_:Nc59370b34e744ccea662634c9e097e37 . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes." . +_:N52fa8c08e69140bcb3dfe4ff04213e24 . + _:N94c4885d8eea428f9bebdd3857c14841 . +_:N49e58125d4434ef2b3e5383a54c9a8df . +_:N441c723af283460d9c7867b203959c9c "kegg" . +_:Neded352f67324ec98daed98c0f272741 . + "Germplasm Resources Information Network" . + . +_:N60a7f0e71cb645b1ad9176fe2cebf771 "HPM.PEPTIDE" . + "Oryzabase Gene" . + "planaria-ontology" . +_:N8edca9bf35e242e98110972591f8eced . + _:N6477dac462b74a28a7d0f0f860102700 . + "https://identifiers.org/cabri:$1" . + "^PRO_[0-9]{10}$" . +_:Nb961d98f60b34acfb5c91aa7dae33a6b . +_:N39dd6587cbf444beb2f649cc0b3aada3 "kisao" . + "GenAtlas is a database containing information on human genes, markers and phenotypes." . +_:N748c7e36009b434eb7121dc7efab8285 . + "https://web.expasy.org/variant_pages/$1.html" . + _:Nd6d3901ef77146c5a3ce5a118707ae95 . + "^\\d+$" . +_:Nd79d1e2a28894093a619fe635e24b4d9 . + "GeneTree" . + _:N5dd40a9dfe234ba685da08cfdb795448 . + "https://identifiers.org/SLM:$1" . +_:Nfaafd64430884b9a8e4fb34878b458a3 . + _:N8e7659d6ca0d4fd9ab9282f6ca966727 . +_:N21be85f7775846c4913812042440c067 . + "https://www.vectorbase.org/ontology-browser" . +_:N2eff8d0d250a4a0091cf5e0308b2952e . + _:Nd7e7405d791c45908c3a9d354fa3f281 . +_:N19c0df0681754690bee2276edea3e4bd . +_:N1b53b76fdcbc45b48385d152888f42fa "pid.pathway" . +_:Nc687a70d332e45bd8986a93f1d8208f0 . +_:Nb962958d4f9c48748ef382af8d90adac . +_:Ne3227edf15a242c09166ade70a577022 "FlyBase" . +_:Nf7c3d868ac454e8ba97fe2ec93ef91ab . +_:N13a737919a6241aba998e674d3c65f03 . + _:Nb46e8cffe1234a638bb4df81d4428848 . + _:N7a54e1d09fa2401fb2117271fbe5bc3e . + "^\\w+$" . + "false"^^ . + _:N238c7a37ec0c417e9338370b30eeb1e3 . +_:N35d35dd969724cbca25ff7040dbcec99 "rnacentral" . + _:N119a4ece4cdc48419a0428ae173bc349 . +_:Ndbb8e9b58f0a43b598e988e9c867e94e "cath.superfamily" . +_:N6380355c422d45b9957d137f59637cc7 "ENSEMBL.PROTIST" . +_:Ne189ebbf25db421f9338ed42ad1b2998 . + _:N53968c86dbd8451e84df728fdb1a6280 . +_:N333a076b604c4ab482ac3ae9685a2504 . + "None" . + "false"^^ . +_:Na591b75df5354042a42de6d8ef86618d . +_:N6b8a4afb0b7341afa8934882cec3cebf . + _:N940d146e5c4749fda1c7419cc32e8dc9 . + _:N9ff5f89284db4a33b4c4757d133e9dd5 . + "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies." . + "https://identifiers.org/gpcrdb:$1" . + "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all." . +_:N3ed8e73d31c04ee8ba0bb30b19e5ee45 . +_:N21b9d586a4b1492db5faea1880a4cbd4 . +_:N188c1bf636304dceb8060ca89aac0d41 . +_:N3e3eacbc026e4abeb5fd8dd4d92b67f0 "GENETREE" . +_:Nff27a709af3a4fe8ae01cbece23d2e39 . +_:N116f10c0e8d042fba0b907d09f4cde7b . + "false"^^ . + "https://identifiers.org/oryzabase.reference:$1" . + "Unified Medical Language System" . +_:Ne259d21f19a6401fa31720f2a506f657 "OMRSE" . + "^\\w+$" . + "None" . +_:Na63317d58f52413cb92ca88d3514ec62 . +_:Nbcbdbbf26f3a4f2497cf4725f6a7809a "PDB" . +_:Nc8f499aaabdd44d689d297aec6e00ada . +_:Nd56a39b6e8b64646a56d00858863ca64 . + _:N189bd2fa55f4480ba42afa77a155593b . + . +_:N9a5be245fc17403fa4655bc23e5a1949 . + "https://identifiers.org/t3db:$1" . + _:N7f3fb7ccf01143759739311dc0318cea . +_:N821eaec3b9b841b399ac2c80c7e332c6 . + "Collection" . +_:Ne255a9b140df4cbf8a569f461cc8646c . + "mcourtot@gmail.com" . +_:N35889a42b15141dd848bbc2317573000 . +_:N1d7048f17ede4b5ba4318dec3ad78df9 "sbo" . +_:N22965f4568914cfebac7b43b7c81c104 . + _:Nf0b2b3668f1a4cd9b2665ef3cc3e4af3 . + "false"^^ . +_:Nc43e85de811d4707ad8ce2b251f93063 . + "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones." . +_:N88b4aa90c60a46159a83cdb0b070ee23 . +_:N1ac7404b56fc4e358b3e21a9b03f7763 . +_:N821122c9635940e79501b903341e5a59 "CST.AB" . + "false"^^ . + "Molbase" . + "https://w3id.org/reproduceme/research" . +_:N6d2ef8f9fa534234801ed36dee17148f . + "None" . + "^[1-9][0-9]*$" . +_:N2d28fd2bdb094b6886811234ea9032a5 . +_:Nd92db01af3f74fc6aa4219e50aa47eb5 "co_359" . + "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes." . +_:Nc3ab1107730640d487395d28ae0657b8 . +_:N1fd1111641264ea08a7d88260d4a5b52 . +_:Nb989893d31fd4facbd8134d089f0bba0 . + . +_:N17cb84b0e5c741f5aa79303d9ec2f33c "complexportal" . + . + _:N123d008c64c3454ea007bca0c42897e5 . +_:N3fc1564d6fda4cdeb69a4cbee8ab338d . + "None" . + "https://identifiers.org/plasmodb:$1" . +_:N3ea8ad5d36ca484fb25448665c4860ba "EHDAA2" . +_:N7955b48d3a0a4efbb424e9510f5a4736 "P7001" . + . + "https://raw.githubusercontent.com/obophenotype/cephalopod-ontology/master/ceph.obo" . + "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components." . + _:N565cd27b027840668343bbd0d518dde6 . + _:N7e308e66230b4e0ca203efe9ea0697fc . + _:Nd9d375fbedd242f0a6299a111e9f38b5 . +_:N9c9fb0ab41b74e778166b044205c95a2 . +_:N61a449542a1043a59e4f97d368f0984c . + . +_:N715fc183968d463c8fcabd0b15d1b944 . + "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information." . +_:N3e4cdc36d049458f8cce52cdd4a20c78 . + "nje5@georgetown.edu" . + . +_:Nce94d7f108d048989700c3f2c821fe2b "wikidata" . +_:Na2560cc8aeff43b08982d5b615486ad2 . + _:N0db63491cef74cfdbbe7179654a011d2 . + "false"^^ . +_:N54baafdd6440408d8929019bc020d3a5 "PMAP.CUTDB" . +_:N3a22d220a7054433b355b081c147c60c "cryptodb" . +_:N29c2adfc8ce743cc87e4e458cd271659 . + _:N2b391fd5963e475b9c380c052b34db86 . + "false"^^ . +_:Nf951eed99fcd4930a20aa42e4070f3a1 . +_:Naae20bd7d1de499ba003001c306fb7a2 "AISM" . + _:N42a644e3618943479ccd4f22e014aa78 . + "0000411" . + _:Ndac119c395c946b2bbe5696592b45203 . + "Biological Collections Ontology" . + _:Na60ac262074b43cd93ea082f3089d969 . +_:Ndec2a71fc31d4e779b53479352e7b943 "giardiadb" . + _:Nf55ef4737cb64ceb9c4768f4ef4d8ebc . +_:Nc7c104e343694608b6271fe54a9a124c . + "Pathogen Transmission Ontology" . +_:N0743eb345dd94a2b97c8a76e2195c97c "dbSNP" . +_:Nae49ec024c0d411782983f04a9bc39f6 . + . +_:Nf820109c6cef4fb0b1d2a628865a317a . +_:Nf781ba4d42be45f5a917392b880fbeeb . + "false"^^ . + _:Ne664aab8c2b84b869c9b0913a7e9224e . + "http://esbank.nia.nih.gov/" . +_:Nbc7d50719f8d45e5ac2fecbab07a8730 . +_:N06a00c8ad2e540068b53550e71b9e475 "MEROPS" . +_:Nffacfdeaa7e141e785995eacb1ab6c63 . +_:Ne1e6597057f8407c898b742032e4ba1e . + "Chemical Component Dictionary" . + "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data." . + "https://identifiers.org/iuphar.family:$1" . +_:Nb564fba508a944db9ce629fd1af556af . +_:N55e505922c42443e8c55c6b970637e81 "dideo" . + . + "false"^^ . +_:N55efb6909c634de3a7947cca14960121 . + . + _:Nf7bbbb997d69421a9788742039059736 . +_:N2fe7892b80284a459a86c3474873c3ff . + "0459895" . + . + "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community." . +_:N728a5511f3124f91996843d10a0616d4 "ORDB" . + . +_:N97ae41bb81904b36bcec5eb04da99201 "arrayexpress.platform" . + "P00747__P07355" . + _:Nf24359857419468c88bdc7dd7c69e377 . + _:Nf952081e14bc4670a9e6d69f2fa5150d . +_:N8ad4af909dde4fd38b42e59b8e44f009 "co_337" . +_:N8686c56490a142a18abd9fef2c0d6878 "FlyBase" . + "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps." . +_:N26109b1a75e34fd0af16297a8a46dcd9 "peptideatlas.dataset" . +_:N94421bdef26f4ad18f93c9df9e2e70e2 . + _:N5755deeb9e2f4df999c7a65ae340d162 . + "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases." . +_:Nb42cec42ee7843428b87d3f854c1e505 . +_:N8c345a7ea44f41b39eabbe7f6fcd90ec "PPO" . +_:Ndcce57d2d272434a97ac4f17160965bd . +_:Na0eb689746654836a952d90a24f46732 "IAO" . +_:Nf4b049117c6d43b8bfc34484a1017588 "FB-BT" . +_:N127521249ff5476da457f7abb1d531ff "oma.hog" . + "https://identifiers.org/clinvar.record:$1" . +_:N0d3b34adc0b542bfafaa73f9e7865b08 "ohd" . +_:N4233096d45a745d8b598f4d66839d9d7 . +_:N37f9900958de4c9cba10aa386ef9eaa3 "fix" . +_:N6d73b260f4434df09f73a9c9ce1dfec4 . +_:N3db9de85e23a4630a6de196c2d3eec9b . +_:N0c92afc350924ea1b2f2434d1ab40971 . +_:N54643e830e2a48b9884ef65193ce8c81 . +_:N6a6ae0c5caf4414096395eb1282d2b67 "probonto" . + _:N4f902af567dd4f769af48d4ae56beed3 . +_:N0127cafdc411485280a041aab3123709 . +_:N224adacfe06a4792af1ff13dd6d030c8 . + "None" . +_:Nd4efcb86e90e42768ba341a72dad3289 . + . +_:Nb0e5d698f3634ffbaa3360e39ea64c4f . + "false"^^ . + "http://www.w3.org/ns/oa#$1" . +_:N5415db695e3f4628b40a2edd4ba79ba2 "P3870" . + "^GR\\_tax\\:\\d+$" . +_:N0cb2bb2e5d0e4758a1d33707d39365bc . +_:Na05b0043c1bf41ac91143f828e1b5da2 . +_:Ned26d0e4299b48eebed668669a029665 . + _:Nf66563d342c24187bdf9af887675e700 . + _:Nc4c3cd43a9744c3fa62b2b1ecab9c38d . + "https://identifiers.org/fb:$1" . +_:N3a4a9f1c33854a08b831ec65787b47ba "JCGGDB" . +_:N1aa7ac5978fa4cd3ae8dfa32da19b0d6 "P652" . + . +_:N1221925c5eab4bd985c5026cf78bbbe2 "rnamods" . + "huang@southalabama.edu" . + "None" . +_:N92c0d88a7a804053b19ceebbe80a1000 . + _:N7403f3e7a90f400f8717999ec2a8e5ec . +_:N580e1e3363bc4665818ce7cfba03a460 . +_:N39dd6587cbf444beb2f649cc0b3aada3 . + "None" . + _:N30f201166c8e451d95a262fde94d15cd . +_:N781c309c800d4614901fe6da57296fca "eo" . + "^\\d+$" . + "https://identifiers.org/miriam.resource:$1" . + "ASPL0000349247" . + "None" . + "zachll@umich.edu" . + "https://panoramaweb.org" . + "http://ecocyc.org/" . + _:N610d5481271d47be9f7fa70bb2fae951 . + . + _:N86afd1948102482ca6503a68d76e8ad2 . +_:N6b449dac218d4985a96c0d38bb7eb2ba "emapa" . +_:N6277cc43fce94764bab51dfcc66d4b0d "NCRO" . + "https://identifiers.org/GO:$1" . + "https://identifiers.org/meddra:$1" . + "CiteXplore" . +_:Nea2ca62e57654db5808786583f58f3df "IntAct" . + "https://github.com/Novartis/hpath" . + _:Na33b1c27f3d944f4ab43d0f4448f0e68 . + _:Nbb4c8200bc224971a4f929c42046a007 . + _:Nac5fc55ead0b4b52a4ba5634116a1adc . +_:N3f9e612076734012911d0a2e45420c96 "OBA" . + . + "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information." . + "7499841" . +_:N570bcf3bd0a343739a2f2d38fd8a24cf . + "None" . + _:Nf755d864e0be4bd89147233a7844ff38 . + "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds." . +_:N317bd62724834b99b7d9179a6b34035d . +_:Na3789ffd6a9d498a85a282ce00dc2f8e . + . +_:N2d7e38d6d55f4bfaae8fef8cb8734149 . +_:Nd7dd9cc4b6f44b3681feb243ee296e33 . +_:Nc25eea459f024e49abc1cfbc32fd6159 "irefweb" . + _:N4ae0eda0e1f34044ad9054b8aa8cadbc . + "None" . +_:N83f3d38ae5014773aaa4d17d59a54239 . +_:Nca4770a331934a9d8efc1e6b24f51711 . + "isanchez@cnb.csic.es" . + "None" . + _:N299381a71bb240c9956e7c18d79c2c52 . +_:N6feb98f14aab4a61b6176740b5e322c6 . + "Laboratory of Systems Pharmacology Compound ID" . +_:Nedc1b178faed4ec680b8e4f68628aac1 "nuclearbd" . +_:Nf6033d07d4d94c6da1ad5b9678bb51b1 . + "false"^^ . +_:Nc2f2cf26ef2d40d0aaf8513cd0d92796 . + "http://flybase.org/" . + "None" . + _:N1af2bdb842d34bf0b623a4afc9535664 . + _:Ne0e53293a5a8482486ca0640ad1589e9 . + "ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available." . +_:Nc4024776fb7648dcbcec67770a01c4e2 . + "This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations." . + _:N58a41cc007c0482b9b2f6aa5f9ed9a16 . + _:Nfad10b490ea648cf91a8547bc48e25c1 . + "https://identifiers.org/orphanet.ordo:$1" . + "Human Medical Genetics" . +_:N95629e14906b415a871f9ca8b066dddc "MPATH" . +_:N2d4dce4058d741618b9ece3ad2df4671 "cldb" . +_:Ne4c2df75b9bc4347bac793b6bb5ee7b4 . + "https://identifiers.org/apd:$1" . +_:N5bb6ef30f47e44e1b2d2ee2fea94a92d "rgd.qtl" . + "Soybean ontology" . +_:N11dcb98434144f8e9825ca72f8d08a62 . + "https://www.ebi.ac.uk/ols/ontologies/vto/terms?iri=http://purl.obolibrary.org/obo/VTO_$1" . + "false"^^ . +_:N67443bb5b82346b4b8273495a126f3c2 . + "http://www.gramene.org/" . + _:N057a2faa4307406ea7d53ea9633e444c . +_:N0b245887e0d34af79e4f94858fd37e85 "metabolights" . + "https://github.com/HUPO-PSI/psi-mi-CV" . +_:N6ed7ff8feaca40c8982b393b2be02640 "umbbd.reaction" . + "https://identifiers.org/gcst:$1" . + "SitEx" . +_:N2600717678a14e5297bbb6d6e414b694 . + "false"^^ . + "http://bioportal.bioontology.org/ontologies/LBO" . +_:N8ed6bffed4b547a2924abd655fe91ce9 . + "false"^^ . +_:N587324241b8144eda5115471adecb0ec . +_:Ncd7171f406934084af3afd5c32fe2410 "CMF" . + . +_:Nf78725e11a2f42f7a98b81f71e307e81 . + "false"^^ . +_:N627b152d60874fa3830b02402a03b335 . + _:Ncb83dfb88bb64008ae2a40355fc5382c . + "http://microbialphenotypes.org" . + "http://www.ebi.ac.uk/efo" . +_:N4f23d4eb1f7d44e9905785c028de617c . + . + _:N42277e7ccacc4b499caceb344bc8b416 . + _:N74262afb39af447b9110268f32216abd . + _:N8fb3a35a342945c28349902b62adcf4d . +_:Na4ac88fa6a2446d2b167e8f290da4607 . +_:N57296dfcb5bf451393b113c3da9ffd3d . +_:Na7c02807fc9a4181a76dc74c1c75f9ea . +_:N3044c041ff8e4a9d8ef3046622f0b66a "xsd" . + _:N8eed0c4198ce4b14a8dd56bcdace5c4e . + _:N2f06741179c14e30bbc9ebb6d0fce262 . + "None" . + _:N6b9c3740830840d0bc651c798a82ddf4 . + "83088" . + "false"^^ . +_:Nbf2ead381b834506bd1c93b90b605d2a . + . +_:Nf9e69f78d68b4a21b19942ff83588597 . +_:Nb2d64ed027614182bc23006ee5c74d21 . + "None" . +_:Ncd534b92355140fd895f6cf2126ef60b . +_:Nb517abdbc380402fa4b22c97b66e1896 "agricola" . + "Span" . +_:N2207cb9825ca4857a99377e9320bd4ca "bto" . +_:N15ede96e1769489ebce60bf258f2fab3 . +_:N65b031ee5c70414a8a8bd2c47c95e24f . + "https://loinc.org/$1/" . + "false"^^ . + "https://identifiers.org/ngl:$1" . + _:Nf133c37b3c6547e69ffc4745c249187e . +_:Nce0a1fd61c1348f4acbf73e64012b461 . +_:Nbbc2a36133e14118a15f9b6d1c468935 . +_:N41b49b2fdd6d4716a5a81a9ed4cf9b71 . + "The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way." . +_:N4351a393b1684bae9589629b17443d9f . + "https://identifiers.org/orcid:$1" . + "^[A-Z0-9]+$" . +_:N390523c70a214560b15f42cdf612a585 "BEETLEBASE" . + _:N42394ee9ddd84f42a5d7b1e733be998d . +_:N952e982d252c41c7b50011d930838366 "edam" . + "false"^^ . +_:N18cb1c5e41dd480784b07346d12b5591 "ico" . +_:N3687da029cb9449889527882d1a97d98 . +_:Nb8de8d3388464cc383449485e8cf0a79 . + "None" . + _:N031cbaba722347c387557f19f8006673 . + "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . + "https://identifiers.org/flowrepository:$1" . + _:N35aafd9a4c4e47819aabedd2d24f596d . + "None" . + "https://identifiers.org/ordb:$1" . + _:N0c8377f52b33454d8e9ae2056a3d5f81 . + "648028003" . + "https://identifiers.org/aop.events:$1" . +_:N5ec2840aa17a40698f6bc2d3dc490408 . + _:N5ff5a89750ae452495906ad2c09baa1a . +_:N5a1fe75009504de4b46c8c61a6a61d11 "tcdb" . +_:Na9b0ca190dc24b04b5d90e0ef28c65c8 . + _:N3a78565a506e4374a2030d4864f821e2 . + _:N0fd2f9ecf4884319919b5525e8c778c7 . +_:N51a763dfc61a469790f09a5bfce0216d "DASHR.EXPRESSION" . + "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes)." . +_:N6716763b145546d2b50ba627ebee5531 . + _:N6c61209c38364e2fb20ec3ad7ba9a8ba . +_:Nc3ce354e14e54e24ae58d9ef8c6abf06 . + "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language." . + . + _:N70133211da1346f5970ab59dde1fd5b3 . +_:Ne3e681233b06478c9387b472084661dc . + "Sugar Kelp trait ontology" . + "https://bams1.org" . +_:N87e64bacb936484f81f1b7ad129098fa . +_:N151d67a34f9341d59cf4089fbf621a1c . +_:Nae0448afed2d494580e0ada3a10d8440 . +_:Ne7c195ddfa6f4bb4bf5b90b721df1f33 . +_:Ncae6bc33145a4ac09e0848c94b2f7e3e . + "https://identifiers.org/RRID:$1" . + "https://identifiers.org/SWH:$1" . +_:Na709d50f045848419bc52dca22c7c979 "atc" . +_:N932876cb55124ca490847a026e5fdbb8 "miRBase" . +_:Nd2d971c8139444d7a1360ff104c8bfe8 . + _:N821122c9635940e79501b903341e5a59 . + _:N31ed7b4787724efc89c62dd5152b5d4a . + _:N8c31c174ed9f414098e1b7efcb82d281 . + "https://identifiers.org/mex:$1" . +_:N575376cffe8b4341a40d43f2bf3eaf90 . +_:N0c072d5c954942d3977b0fbe41acb490 . + "^casent\\d+(\\-D\\d+)?$" . + _:Nc3eff2448e4c4dcdb14e36d82c3dd78a . + "None" . +_:N0d4e150e6cf14312bfc05dcf34bc7b04 . +_:N5c98a3be823847878ae1630f7297e3d0 "CHEMIDPLUS" . +_:N0989c91828f04dbfbb8099d8e0627e7b . +_:Naa68be54df964ea19f1b321542117814 "POLBASE" . + "false"^^ . +_:N41b25c417d2447c9928cf5f496553225 . + "None" . +_:N31e97ce1c06b44e6a5bc5e9b10d802fd . +_:N0c5c6f13dba04e61aa41e35c5d77c367 . +_:Nc0ff0974d420469186842ffc145baf87 "KEGG.GENOME" . + _:N6377a245e98b45ab9ffdec4daec1fb2d . + _:N73fac5ece78b419eb2110780bb9bd95a . +_:N55f2ff0d284341e8b9913caf1a9b5e04 . +_:N5e560ed1223f42d5903d1c2a91dc3c29 . + "https://identifiers.org/sgn:$1" . + "yongqunh@med.umich.edu" . + "None" . + "International Classification of Diseases 9th Revision" . +_:N96c387e66616436d9fe1ec9105fbc30f . + _:Nd5e7d720031b41b9ac8d3efb0d6c261f . +_:N52aa21f0fc3642a2abb7102e5a15bc62 . + _:Nf3407cbb6c7b480cb7de12e3692acafe . + "None" . +_:N48ca195bbdcd4015979f43e949089b42 "OAE" . +_:N881c18eecd944ea3858f4a228961dcf3 "ena.embl" . + . +_:Nc90e9b135bed424a8421c3e24628d8ab "ENA" . +_:N1b49e39a2f084d8ba2dbf6e2f6eafdd2 "iuphar.family" . + "3hB06" . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules." . +_:Nff62c96685914ecd9d0794d843135f99 . + _:N5abe586a9a3a40a5b1ebc0b8f1170470 . +_:N1c7a73fad7824b50813a9cf19e08aaed . + "Sunflower ontology" . +_:N213b00a3151341df81813d4dbfaf3cca . + _:N52165dde142b4fa2894e163f44dc0793 . + _:N0b245887e0d34af79e4f94858fd37e85 . +_:N3f5bb241e1e942b08ad828d950e27fac "REX" . +_:Na5052cc091484ab1ad8b15db0350eae5 . + "6VDC956" . + . +_:N2097ef34229945e49001ba9255ceed45 . +_:N862c530bfd1e4641bf798c08685f1c83 . + "whimar@ohsu.edu" . +_:Nb875a74f6e454866a4668dc45a8d8d41 . + "^MAMO_\\d{7}$" . +_:N699799359ef8439c91d6e2970bfc697e "obcs" . +_:Nfae1094dd6c5436a8cce2f9b5c00443f . + "false"^^ . +_:N70eb0749dd6a4cb7b494767f9cf5052e . +_:Nd9d375fbedd242f0a6299a111e9f38b5 . + . + "^MMP\\d+.\\d+$" . + _:Nde2b9f60eb324f2b8328c9fd0d3b10f2 . +_:Nee101c4ae5544dd4955e9a1fde93483b "foodon" . + "^\\d+$" . +_:N88dce4ec04da4328934d6b2032341c2a . + _:Nd7e2c1828ceb4748af084ef363732e1b . +_:N5ddd7575c6a241d1aeb83f4e8d9aeb41 "dbEST" . +_:Nb12963e0cbdd47609605f78f49a760e5 "hinv.transcript" . + "false"^^ . +_:N4e909cfbca6b4f309e5b274474752582 "NMR" . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene." . + "https://identifiers.org/homd.seq:$1" . +_:N949b4e181ef74b0483747738b2a8eb96 . + "https://identifiers.org/hgnc.genegroup:$1" . + "CAA71118.1" . +_:N46ebb7d5e4fa414d860a094fe0a7ea16 "plasmodb" . + . +_:N2c74e6536a7640da9829a1db86b3561c "aceview.worm" . + _:N3fbd3e5cb7e24929ae23fde197128220 . + "Performance Summary Display Ontology" . +_:N2c8a9260917c49d3b47ca31d3a8d7488 . + "10194" . + "https://github.com/IEDB/MRO" . +_:Nefa85aac45324876b60b85e236dbb313 . + "None" . + "Sequence Read Archive" . +_:Nf9a64022b4f7461ba5090d35c202d74f . +_:Nd8694eb4e3db4e0da68c04ba48a2d13d "cgsc" . +_:N6355fa6d44e240f595dee46f84f646be . + "^\\d+$" . +_:Nf97621cadd184864b8bb38b1379885ab "co_330" . + _:N721c8924a87a45f68f45ec8eb6308c05 . +_:Nfc6bdb142017498fad2dd78b18c01382 . + _:N244d728b56084ce48bd419f0201fad66 . + "https://identifiers.org/spike.map:$1" . + "https://identifiers.org/funcbase.fly:$1" . +_:N7e308e66230b4e0ca203efe9ea0697fc "mw.study" . +_:Nd9d375fbedd242f0a6299a111e9f38b5 "PomBase" . +_:Na3b75452a5ac49758dec821b312527dc "NLMID" . + "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution." . + _:Nc1431de684b843f9b2e23173b3663944 . +_:Nd762fd1928764113854c5e34db862e30 . + "https://www.ebi.ac.uk/ols/ontologies/mco/terms?iri=http://purl.obolibrary.org/obo/MCO_$1" . + "https://scdontology.h3abionet.org/" . +_:N497341331c4747e998a19ac709517dc0 . +_:N365c44d91dcc4082bfe118bf28b7c8b7 . + "An ontology to standardize research output of nutritional epidemiologic studies." . + _:N0a5e802f227e437983e1c621cdf74508 . +_:N33b5a977faf54d9fb492269b2cd9aa6e . + . +_:N5ba4b2f0a79342fda49f778e0ab9e443 "TADS" . +_:N8c8d8931c9564a9ebe6a0e2b1af36342 . +_:N30469ae779254e45b28628c629fb2819 . + "false"^^ . +_:N78082c543fc34f41922a5c64f1949702 . +_:N01543268fbc449e4909f8c8e2f8ac234 . + . + "5.A.1.1.1" . +_:N377a7a3aaf0447c7b90ae7ded75fe77c . +_:N222e2ee8a6774a23be7daf7549f7edcc "vfb" . +_:Nea3cf25557bb4334b39365042bc20b5c . + . + "https://www.ebi.ac.uk/ols/ontologies/swo/terms?iri=http://purl.obolibrary.org/obo/SWO_$1" . + . + "https://identifiers.org/bykdb:$1" . +_:N64d3332d57084758a43f48d8cd32b3a2 . +_:N72d57f6c41a84bba96ff18f35531cc19 "FUNCBASE.FLY" . + _:N3fa1b0a74ee341d5b9840e36fd914595 . + "false"^^ . + "http://www.mirbase.org/" . + "ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.\r\n\r\nThe mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described." . +_:N30c31161f00244049c2d5f7bf2283865 "DC" . + _:Ncdfccbb33efc468ba76c75d24ec1610d . + "Environment Ontology" . +_:Nbe46fc091bdd41ceb970b580d4811f09 . +_:N69cd46d39dfa431daf6a6187977e87a2 . + "https://identifiers.org/cellimage:$1" . +_:N830a73f99e3e43548723e4467a64ec8a "cath.domain" . + _:Na128b929425b47139fccf49a581d104c . + _:N9607944cca1d451cb53d0e34fefde91d . +_:Ncaf0a4b9b03c4b8fb4e8773e1f11e89e "miro" . +_:N925cdcb585ca4ab4a66a58352393c4bd . +_:Nb392b0426cfa41d882de1ced8c6d87ca . +_:N71f67e6603874533b9d0f187b3b79b2f . +_:N7f965a343da544af956187768633dead . + _:N0f68572c69e34220b6e8ba166c126bbe . + "Molecular Interactions Controlled Vocabulary" . +_:N30620bc76862481384d7735e16c61852 . +_:N71a35519c51348a489d81324696f210a . +_:Nc410bd1772e241b1879847652cb4ebae . + "Application ontology for entities related to insecticide resistance in mosquitos" . + "^((VGNC|vgnc):)?\\d{1,9}$" . +_:N9c55effd3a384cf3a938f05e0e18f398 . + _:N585dcf478e2545a09b891c5be3bfa302 . +_:Nc18b47f9bbb648688c30178207fbbae1 "GRID" . + . +_:N2f2acd88caa94ac2a96633712c57073e . + _:N3b830f0954bc457b941e0fd9ea19f6af . +_:N43769bc2f45a434a9b6e46e0b21ba5c8 . +_:N4861324712544b5f87f5a179c365edc4 . + "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology" . +_:N626a8320525c4003a0157d9f37e33c9b . + _:Nc045372c7ac5482bb3d7279202d25a74 . + "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids." . +_:N213b00a3151341df81813d4dbfaf3cca "CONOSERVER" . + "^SIGNOR\\-[A-Z]+\\d+$" . + "Cancer Staging Terms" . + . +_:Nec8dca041d08498c9316f38f7d0eaaed . +_:N115a07370ba7419bbb8df49a636d0b96 . +_:N9164accdaef6411cbe2467dc04dc1082 . + "Malaria Ontology" . +_:N119c676e75d442b0a2985e0291a80f9d "ATCC" . +_:N42305f466f704ebeb1625845e434363a "SCRETF" . + . +_:Nc3ab1107730640d487395d28ae0657b8 . + _:N6c3f13ab838b417aaeed5a5e758df935 . +_:N6e9c3ea82da6409fac3fbb945aac0769 "DOQCS.MODEL" . + "^\\d+$" . + _:Ne189ebbf25db421f9338ed42ad1b2998 . + . + _:Nbd6b6515f64a48a19f289bf5f16b484f . +_:N3fc1564d6fda4cdeb69a4cbee8ab338d . +_:N06a4323757b84dfdb324b81f3ecb1bb4 "NEURONDB" . +_:N1535adae405c4fda8e2de017844ab66a . + "https://identifiers.org/insdc.gca:$1" . + "90062901" . + "^[0-9]{10}$" . + . + _:Nb23100f46ea44622bd8aeab38d3e0db8 . + "973a9333-fec7-46dd-8eb5-25738f06ee54" . +_:N07b3c36d14ef4c039c2c09c0d599d421 . +_:N6fcadfb2fc5d4ae99bdc033a0d4450b8 "biomodels.kisao" . + _:Naaffb007f49a4cd2a6dc15f3f733c296 . +_:N0b0d6daeebea460f8ae0eb74db3df685 . + _:Nd84ef26ed0ce4dd481cf9d5ca7b1aa4a . + "^\\d{4}$" . +_:N8f52e27e4cd7486c93b2d6b52c3ce47c "FOODON" . + _:N306ee873ec584fdca797204e08f48169 . +_:Nb0971deb12004cd8b78480ddf7fd91b6 . + "https://identifiers.org/hinv.protein:$1" . + _:N056582aae81c485494bb426b2931a622 . +_:N104a45c98cf74d7db58886ccf94071a0 "DDANAT" . +_:Nb4f01873cc414bce9e25c71bbb0ab066 . +_:N93e020b3b5b846d88bc89ca190b65e29 . + "https://identifiers.org/dbsnp:$1" . +_:N2a2a08a7b50e4591a31a998ac8561402 . +_:Nab25b703fdcb43f596dc22cb65347ad0 "pscdb" . +_:Nbd3f011629524aacbf5ad68f6dcc94ed . + "https://identifiers.org/trichdb:$1" . + "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location." . +_:N0bba5c28be574e35bdd2d70acca99355 . +_:Nf12d9baf719a43758ae1069043a328f9 . +_:N9c8ab7b02afe4a02aa187774a8336580 . +_:Nd5df0329d19e499c9f02224689a11aa2 . + . + "https://identifiers.org/gateway:$1" . + "None" . + "false"^^ . + "Candida Genome Database" . +_:N826957724ab44793bf01709efcb3abde . + "Plasmodium Life Cycle" . +_:N7268d2e7f64842e18f786249ff12a21f . + _:N407790e5df3948d08fbcc558c5f2fa69 . +_:N4230a9e838ea4f1da73859d9b722df1d . + "https://identifiers.org/ensembl.protist:$1" . +_:N63faf99915f64df9a937ed7fcafcc668 . + _:N8edca9bf35e242e98110972591f8eced . +_:N4f21a1c7504c41608aa0cb2b8b8c6c51 . + "http://purl.obolibrary.org/obo/chiro.obo" . +_:N03d4c5f75314466f914e575bac5a0764 "mpid" . +_:Nf3f9abea057f4bef8a298e93998a5da1 . + "false"^^ . +_:Nf8c5b8b43afc400496c6fb13ce34e5be . +_:N86d4b6804f924bd596c81793faf61026 . + "http://www.cropontology.org/ontology/CO_341/Pigeonpea" . + _:Ndf1f12341a534dc8b30f9b49d8b8875f . + "None" . +_:N707812ac3439442fa52c56ce09fb5ca1 . +_:Nd8101bb6e7a1478ca1229f7b56576939 . + _:N28218847d0304685a9c506c6d668b009 . + "false"^^ . + "https://identifiers.org/gwascentral.study:$1" . +_:N6ebb5b62da3e41f182ce80060bb75670 . +_:N158d524410bd44a09c03f0b820b8aa01 "wbbt" . + _:Nb72b23f400f04e9a892b49bc339c045e . + "https://identifiers.org/GO_REF:$1" . + "HMS LINCS Compound" . + "false"^^ . +_:Nf451151cdc36483089764eb84e81792a "bioRxiv" . +_:N3fdb5811d37d4a9eb2666d753cb2f658 . +_:Nae1591770e6c483ababa61bd4aeaeebc . + . + . + . +_:N77916549a55a4a2ab7e9c8bb34d45c7b . + _:N5ef49c39fa8e4408b6b8d107858616c6 . +_:N2171494281d940b189f9173d888ac7b5 . + "Aclame" . +_:Nf9de609453484e21bc09be1bbf6accbf . +_:N382b733c644445d196ddea91ace7e52d . +_:Nabd131948fb547bcb3895bfa2bfa01fe "so" . + "None" . + "None" . + _:N21b2c759ad4a42009ce4ac52306f1a86 . +_:N6d73b260f4434df09f73a9c9ce1dfec4 . +_:N8942d9255b1c45dd82b98e686b917476 . + "false"^^ . + _:N8ad70a18e3e84627b57a22830d6af161 . +_:N892332231429436daa752baeab01b6c7 . + "false"^^ . +_:Ne2cc1b8f475a4321ba152f923ba7d828 "UCSC" . +_:N3ac4ecff269f47d299609dab38f43cb6 . + "BioSample" . + "https://identifiers.org/smart:$1" . + _:N2cf8356159144eb4aec56e32d550e7a3 . + _:N3c9f9153d9c2483cae91a9021e9bf975 . +_:N716548378350445b9ef8d57ee0d72173 . +_:N7a104434d8594448bc6a6f8a33962a47 "vectorbase" . + "Vertebrate Skeletal Anatomy Ontology" . +_:N86d73947ecf44134a7a7935f3aaa1f0f . + "A modeling paradigm-specific registry of prefixes and their URL expansions" . +_:N365c44d91dcc4082bfe118bf28b7c8b7 . +_:Nffde36c529054a96914c98c93db8f016 "GENEWIKI" . + "false"^^ . + . + "None" . +_:N1024cd858750460cb6ab48e667ec01c1 . + "None" . + "^\\d+$" . + "https://identifiers.org/protclustdb:$1" . +_:N1176479649ed47cfb8a325f45ad0bd6f "RGD" . +_:N0ff15e29cdd74809a823b11a95c704f1 . +_:Na01bfee6cf624720bdb44bf11656ed55 . + _:N4742592f576d45f19b851d4bdbb3ba30 . +_:Na894eac69df94b76b6663f35fb2a30dc . +_:N40c0ccdd28b64deb99f1f929d4714554 "ECYANO.MODEL" . +_:Nb6d27919d42143d2a3a03f4491826906 "miriam.resource" . + _:Nddf07a489c5e434d9560c88d2641d28e . + "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages." . + . + _:N151d67a34f9341d59cf4089fbf621a1c . +_:Nab2880ce604a44538e49d8ecc478966e . + "https://identifiers.org/cgd:$1" . +_:N19edf8a029664b37b83b24d939f1b9e4 . +_:Nee5001ef656c4954803add1fbe3f8c54 "hcao" . +_:N2f19f215732b4b30b8205b996df358fe . + . +_:N469d2bfe1e914423afd45678443693c4 . +_:N6acd567fcba447e59b54e241305f9e00 "CLAO" . + "NucleaRDB" . +_:N003db58e80a2489a84da197acb8ad8ac . + "https://identifiers.org/phenolexplorer:$1" . +_:Ne4cf3ff7560a4ae29a11d34fe140a105 . +_:N7403f3e7a90f400f8717999ec2a8e5ec . + "http://hamap.expasy.org/" . + _:N5bb6ef30f47e44e1b2d2ee2fea94a92d . + "false"^^ . + _:N87eb0b5036c747289a8e5013ed70deae . +_:N4696a2cb81d04488acfbd975a3bba171 . + "Protein Model Portal" . +_:N5755deeb9e2f4df999c7a65ae340d162 "ctd.chemical" . + "T30002" . + "false"^^ . +_:N230490758d85400b841195cb7a23a684 "PFAM" . + "SNR17A" . + "MINID Test" . + _:Nffacfdeaa7e141e785995eacb1ab6c63 . +_:N317bd62724834b99b7d9179a6b34035d . +_:N8d376c31a4e2430ca2210d512ddcf09d . +_:N36cda1b7b1784235a72ab25a1d1133bd . + "Compositional Dietary Nutrition Ontology" . +_:N3ccf71a3353f4ecb992ee3c6216b5dbd . + "https://code.google.com/p/craniomaxillofacial-ontology/" . +_:Nc91fdb6f9d724a3ca5a00a10c35d5d1c . +_:N1d3fa651d95842c3b2402419b8ec1dbb . +_:Ncaad05c21c4e434ebbdba254400e7dd9 . + "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers." . + . + "https://identifiers.org/gmd.profile:$1" . + "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms." . + "false"^^ . + "None" . + "Signaling Network Open Resource" . +_:Nfa62ef6bc8724e63809573c3c334a48f "TAO" . + "None" . +_:Ne3997cf237c242438b9ab28759ead683 . + "^\\w+$" . + "^YMDB\\d+$" . + "None" . + _:N02a62e70e86540aa8ae20b21a10a5ecd . + "https://github.com/obophenotype/human-developmental-anatomy-ontology/" . + "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB." . +_:Nbc7381c9d0874fad8a32e14a29bd5afa "DDPHENO" . + _:Nc141bd9e57c44d3c9cbfbf8541a77092 . +_:N3f22814277af42608b5fae3d6b69b157 "gramene.qtl" . +_:Ncdfccbb33efc468ba76c75d24ec1610d "TREEFAM" . +_:N9e347a783c2f4b6bb1a90cf777965fd3 . +_:Ne4c2df75b9bc4347bac793b6bb5ee7b4 . + . +_:N54db11f1b25946898292055d79efeadb . + . +_:N225d8dca04f24ff2ac7464d8bffc2103 . + "http://www.geneontology.org/gocam" . + _:N14f44d02819b4f76910fbed5e611513b . +_:N7333727dd400482f83771d24ac1554a1 . +_:Nc9f511531adb4f93bc69f67dd80afb3f . + "false"^^ . + . + . +_:N7c384fbfb1d04a1eaa1fdda352f0a11d "sibo" . + "GlyGen: Computational and Informatics Resources for Glycoscience" . + _:N932876cb55124ca490847a026e5fdbb8 . +_:Nf86829b0e2da4d788290d4ee9a379008 . + "Orphanet_C023" . +_:Nea9de07ed76a422bb828c238e7904739 . +_:N3a032929c1df4e47a3d4989bd6f7e028 . + "https://www.rcsb.org/" . + "O80725" . + "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic." . +_:N4c2661c39dd64bcca13c951a8ff9b9d4 . + "12345" . + _:Ndaf5ba0656ac494bbb57c71dcb090221 . + "DEF" . + "BSU29180" . + "ZDB-GENE-041118-11" . + "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1" . + "false"^^ . +_:N19b70b870e834ec3afc92c956683c43f "smpdb" . +_:Nc544bdde24ef40b386ed27a12a97c6cf . + "false"^^ . + "false"^^ . +_:N57296dfcb5bf451393b113c3da9ffd3d . + _:N600e889aea3f49ffa9424038f19d0e8f . + "false"^^ . + . +_:N594fe9b15db241408a1410b03221caa3 . + _:N35b4a0455d894fa3b3a6e0786745f024 . + _:N846be59b67e24a69a62c4fa020966359 . + "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s." . +_:N83ec9068c56c446f95d7792495a3cd9b "FUNCBASE.MOUSE" . + "^PATO:\\d{7}$" . + _:Nddb831a47ae34e56bb4738544ba6e387 . +_:N4feb9ec1379b4809ae9f15e68c602d87 . + _:Na2560cc8aeff43b08982d5b615486ad2 . +_:Ne0006543ab874a8bb50089f72bfb1f15 "ogi" . + "https://www.ebi.ac.uk/ols/ontologies/srao/terms?iri=http://purl.obolibrary.org/obo/SRAO_$1" . + "284196006" . +_:N2b391fd5963e475b9c380c052b34db86 "PSO" . + "Groundnut ontology" . +_:N84aaee18a17d400dbb48b115579ed563 . + "https://www.ebi.ac.uk/ols/ontologies/aism/terms?iri=http://purl.obolibrary.org/obo/AISM_$1" . +_:N1ac7404b56fc4e358b3e21a9b03f7763 "ceph" . + _:N806bd5b7f58542eeb8da5dfa64c643fe . + "false"^^ . +_:Nddb1eb2cb0ab4db28974ba6698f29215 . + "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm" . +_:Nbff79f3a31024f4abc7c5f2ff8438091 . +_:Nea724f52f44743de80af90cf8fabed37 . +_:N3eda0f9c1acb4d59814e8b5b833e0dd0 . +_:N8b3e91b707c141b0a8717e5fd5693bb2 "vmhreaction" . +_:Nada682e4394142e88850265be1c456e5 . +_:N3b33510e97774c2582946300c5886115 . + "None" . + "DUO is an ontology which represent data use conditions." . +_:N3b28771c5b814b459243886638d419d6 . + "BAC045" . +_:N164195cec4df48098650a1c895078b6b . +_:Ne56c0dce8aea4948b29cd811236f6b3b . +_:Nbeb7096cd66049d39ec197d6d1c1892c . + _:Nfed4de3661b84648b10daf36aa6283d5 . +_:N2d7e38d6d55f4bfaae8fef8cb8734149 "IMG.GENE" . + _:Ncca253885cfb4646b321ca366f542844 . + "ChEBI Integrated Role Ontology" . +_:Nd84a6d38db024ba8bb8563eb9a169f67 . +_:Naced988e6a854c568765acd25caa71e2 . + _:N26bfafb341f044e1ae3b88a832f4f3e5 . +_:N35d35dd969724cbca25ff7040dbcec99 . +_:Nad3c10d3c43845bd9c3c20e0c7909af7 . +_:Nb58e6069292b4eb7bfc22662b36536a4 . + . +_:N98e42b19638e4318afd9e9f5e5201574 "coriell" . +_:N5b2d34296fc240f99c5d19b1e619ebb4 "proteomicsdb.peptide" . + _:Na5b48cbb7b4c479b8cee9ca6ba0330ba . + "None" . +_:Ne0f95a77c3ae440fafc3cba482a97c18 . + . +_:N9834464effb3400681dbebe097d8dd77 "CTX" . + _:Nd1bd265d11be4daeb98adf2207550327 . +_:N4867552bc0ad470381d1eb955cf6daeb "knapsack" . +_:Nc04e9589a9dc451d9009071a57ebae03 "UMBBD.REACTION" . + _:Nde238c6e5dc9469fb9643ee5a08e13d2 . +_:Ne892a26719464c42ae5603185440195a "UNITE" . +_:Nab02d816468b4819a22be102b2de09a0 . + _:Na5cad4e125ff4778b355bb3ea14b2121 . +_:Nb2c40c14ca5a4900be17d39a2555e13e . + . +_:N44b6ee31bf1d4313a6c0cc9e19a59aa7 "CATH.DOMAIN" . + "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data." . + "Gramene Gene" . + "^\\d{8}$" . + . + _:N93e020b3b5b846d88bc89ca190b65e29 . + "Life cycle stages for Mus Musculus" . + "https://genome.ucsc.edu/" . + "^\\d{7}$" . + "https://identifiers.org/genprop:$1" . +_:Nc35d45a975334c2580f165692718bd74 . + "1868" . +_:Nd4a0f507306e452d945b371ada521188 "neurovault.collection" . + "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data." . + "CAE46076" . + "1351341" . +_:N9f6ab38300fa4dd5863dced510bfeb58 "DUO" . + "Homeodomain Research" . + . +_:N64e4aeabaabb48a2a0cbed49d01a0069 "CLINICALTRIALS" . + "None" . + "None" . + _:Nc32c996d1afc4b89a6c50d9d4df9e391 . + "FlyBase" . +_:N3991fb870fba4ddabecb19a86b2b366a "AOP" . +_:N73fac5ece78b419eb2110780bb9bd95a . +_:Na4577d31addb44a69c9007cf3b3e5011 "EHDAA" . + "^\\w{2,4}\\d{5}$" . + "MF_01400" . +_:N66be02c904b945ec878a06d233a592e5 "NBO" . +_:N8584e3a431764315a6382f33f91a2a0a . +_:Nb5dd2ef4da8b44bc970c339408366c7b . +_:N96c387e66616436d9fe1ec9105fbc30f . + "MarFun" . +_:N7f70ee37e1374386969a9306e841f3e8 . +_:N3fbd3e5cb7e24929ae23fde197128220 "P2057" . +_:N34383e16f7c947e9bed1d65f62bad5f8 . +_:N1024cd858750460cb6ab48e667ec01c1 "RFAM" . +_:N6754eae8b2ba4eda9f97849935ef7a6f . +_:N6c3f13ab838b417aaeed5a5e758df935 . +_:Ne0006543ab874a8bb50089f72bfb1f15 . + _:N44b07bc1622f421e97f89697a42a7c06 . +_:N4adbe7f516a8422086c6b833cbc802e7 "gramene.growthstage" . +_:N19c51fa3ed6b42c2b2ff855e45181dde . +_:Ned9d63a7b5db485e87ec35fb9af8511d "ELM" . +_:N0c840f41d6434c50a1cf4c7caab8b139 . +_:N3b8479c6ba30424db45bef3b67bc833f . + "https://identifiers.org/pocketome:$1" . +_:Nb55c1549aacf4a4ebfa326cadbdee917 . + "Performance Summary Display Ontology (PSDO) (pronounced \"pseudo\" or \"sudo\") is an application ontology about charts, tables, and graphs that are used to communicate performance information to employees and teams in organizations. PSDO's domain focus is on healthcare organizations that use performance summary displays in clinical dashboards and feedback interventions for healthcare professionals and teams. The displays commonly show information about the quality of care and health outcomes that has been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is not peer-reviewed." . +_:N226cb7dce9b6413298eb11eb3021606c "mdm" . + _:N7a01610c10b149c98907a8e3bc48f12e . + "https://identifiers.org/merops:$1" . + _:Nd44f9958fa27402a84e1fb08155ebff3 . + "false"^^ . + _:N84aaee18a17d400dbb48b115579ed563 . + . + _:Ne6bafaab2a0045d9ab0cc28681134c58 . +_:N9f1e6406c06041b9a7a9a55aa90ce055 . + _:Nfa701f51200f40dca72e6f6f8d34bd4f . + _:N45b31a5d5f9a4026926f09580e207b15 . + _:N78520561e09e4916b60c464a80ccaf3c . +_:N2097ef34229945e49001ba9255ceed45 . + . + "https://github.com/obophenotype/human-developmental-anatomy-ontology" . +_:N418d2b792918482ba91b8b79b5fc8a87 . + "false"^^ . + . + "ST000900" . + "Bgee organ" . + . + . + _:Nc02f37ddef8c4bc8950257f460d0aa6c . + "https://identifiers.org/vmhreaction:$1" . + _:N1e75f09f2c9444db98de62b6965f0ea4 . + "SASDAX8" . + "^\\d+$" . + "https://identifiers.org/ardb:$1" . + "None" . +_:Nc0f64d6f9c1c4beab251b8a0f7345f45 . + "https://www.ebi.ac.uk/ols/ontologies/pdumdv/terms?iri=http://purl.obolibrary.org/obo/PDUMDV_$1" . +_:N8495fc8b8bf64845bbdef28e68abae40 "NDDF" . + _:N8af197dc8365447ca6e8d44a51ecde4a . +_:N21f259c90025417d8a71792d10ee8480 "SUPFAM" . +_:N317bd62724834b99b7d9179a6b34035d "chickenqtldb" . +_:N8ad70a18e3e84627b57a22830d6af161 "XLMOD" . +_:Nfa62ef6bc8724e63809573c3c334a48f . +_:N12c109098ec7423bad745776bb38f022 . +_:N1ba5f287bf214bf3953352f3356a3094 "spike.map" . + . + _:N3f74855957cc4290b5553ec37b98e070 . + "https://identifiers.org/metlin:$1" . + "false"^^ . + . + "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina." . +_:N0c92afc350924ea1b2f2434d1ab40971 "PATO" . +_:N766c1557f3c14775ba557ca92c663a12 "ttd.drug" . + "false"^^ . +_:N7e779451696b4ce698462311c99695a0 "paxdb.protein" . + "Pearl millet ontology" . + "false"^^ . +_:N12aca4ef679743d19046917d38914910 . + "false"^^ . + _:Ndf5f55b512144bda9b29b6997dd869d2 . +_:N8af0d8f3d2c44b169cf209958a9b1a5c . +_:Nb7f0fa8d803944f6904e1e1c6afcd174 "exac.gene" . + "false"^^ . +_:N41e0bd69c8c64d4493e92209284e925f . +_:N26c0e60ce03949ddbf809b2a81c5fb5c . +_:N4b59b891111e4cfca1a7edc28acdd398 . + "http://ecogene.org" . + _:N78d0fb9821b94e8fb4eec2860649cad3 . + "J.Bard@ed.ac.uk" . + _:Nbe46fc091bdd41ceb970b580d4811f09 . + "^(\\w){3}$" . + _:N6771101abe0244b2a2b972a500ff4849 . + "None" . + "None" . +_:Nae49ec024c0d411782983f04a9bc39f6 "snomedct" . + . + . + "Animal Genome Chicken QTL" . + "false"^^ . + "john.garavelli@ebi.ac.uk" . +_:N055efb0566a2480eae78ecc9075d4bb9 . + "https://identifiers.org/MA:$1" . +_:N1b06e0e75e0b4eb5868f507fb3b87416 . +_:Ncc6d3760b3dd4100bd5a548d7d6f315b . + "false"^^ . +_:Ne8f8a4fade904a5fbd45934a4076a8e5 . + "Database of Escherichia coli Sequence and Function" . + _:N69df722cca974b768f0f25eab326467f . +_:N659bd0ba929348f781fd662863058a2f "nbn" . + "^MMP\\d+.\\d+$" . +_:Ne3cafdab25b24746b4c79a6af752cc91 "idomal" . +_:Nf4a90a0c4bb545dcbfed5eb502003388 . + "false"^^ . +_:Nf0a033623e904527967fa7dfe1fcb61b . +_:Necb0716988364380941ce17185e58b1b . + _:Na3c6524910eb4d528e5800c6aa808111 . +_:N0cd29525d4d04c5ebf701a1eb8af2d5c "MFOEM" . + "false"^^ . + "false"^^ . + "http://sabio.villa-bosch.de/" . +_:N71f67e6603874533b9d0f187b3b79b2f . +_:N28c0833db85e469cb2ccc1e3d81f0d13 . +_:N43ba2ab1a23840ac90812c12b47d746f . + "^\\d+$" . + _:N4b59b891111e4cfca1a7edc28acdd398 . + "VFDB Gene" . + _:N11b1c25da383430c88c731293ed4273c . + . + "false"^^ . +_:Nf76381c6d0374fe097a56708ae07a986 . + _:N6138a792c33b4fe4805274fd8bdb6740 . + "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field." . +_:N0bba5aa79eb141dbae0ff4ab1e848447 . + "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data." . +_:Nc410bd1772e241b1879847652cb4ebae . + "^[0-9][A-Za-z0-9]{3}$" . +_:N2f8f2e31e9da4d7b8d572ba44649d98f . + _:Ndd0d12d9599742ad9f288954de40644c . + _:N6f311f9d52294ba4800c86a5dbde5dc2 . + " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB." . + "https://www.ebi.ac.uk/ols/ontologies/ohmi/terms?iri=http://purl.obolibrary.org/obo/OHMI_$1" . +_:N33a9a21d88fb472ebfa383158d894276 . + _:N76296288a50f44359cd1be38e108157d . +_:Nd8b214182fb8404c8d1be69a6c3423f3 . +_:N0da49d7a03564dc59df13a8e56052fdd "vfdb.gene" . + . + _:N1894dc0ed22e4b8794222b29a3ec45b1 . + "https://www.ebi.ac.uk/ols/ontologies/gexo/terms?iri=http://purl.obolibrary.org/obo/GEXO_$1" . + _:N141ba1c031d94a52896a95780ae6c7bb . + "https://github.com/OBOFoundry/COB" . +_:N855bcb5ba5e441a6b0f12f515aa84521 . +_:Nec8dca041d08498c9316f38f7d0eaaed . + _:Nd66811e5c0ce405f80e26845a04c7464 . + "^\\d{7}$" . + "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information." . + "false"^^ . + "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier." . + "^[A-Za-z0-9\\/]+$" . +_:N650b607c0fe64b4699babf3345c87407 . + "false"^^ . + "None" . + . + "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions." . + "true"^^ . +_:Nd54461361c494cf082e826139e23b742 . + _:Nce0a1fd61c1348f4acbf73e64012b461 . + "https://identifiers.org/encode:$1" . +_:N15345c852cec43f5be22c82af37189f2 . + "None" . + "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies." . +_:N40a5ced526b84858a611f94ac2c19fd2 . + "http://www.animaldiversity.org" . + "None" . + _:Neb135005b6dc42c4915fd74fb790a89d . + . +_:N06a9b2e521c841fcb79cc3b04625453f . +_:N812ca9ddccbf4adb8bbd189344a9dfde . +_:N30f201166c8e451d95a262fde94d15cd . +_:N5a12aa340d384cd88953bbf378555d1b "sgd.pathways" . +_:N21ff48392041431898b89b081c3d324b . + "IntAct provides a freely available, open source database system and analysis tools for protein interaction data." . + "https://identifiers.org/geogeo:$1" . + . +_:N0deb866b165e4d9aa67ed845f5dd4d2b . + "https://identifiers.org/spdx:$1" . + _:Ned01603c34294e689fceb23847d85619 . + "^UDB\\d{6}$" . + "a.chang@tu-bs.de" . +_:N7f965a343da544af956187768633dead "MP" . + "\\S+" . +_:N73e5f388bb8b4fc4bb0d363af6cb871b . +_:N1498a7523e6143ac9448a6e9aa05a86f . + "https://www.uniprot.org/unirule/" . + _:N4165a4d0dc3a4c21bcc7a612ed1e58c1 . + "false"^^ . + "false"^^ . +_:N9c8ab7b02afe4a02aa187774a8336580 . +_:N5a0b0117d91d483e86dc8d7a6677bd23 . + _:Naa0cdf5feeac415084c567d26f0421bf . +_:N48efc1343f67475e8dae8557faaf861a . +_:N6f08ce6ed1e348de98162382ed230dac . +_:Ncae6bc33145a4ac09e0848c94b2f7e3e . + _:Nee49069bff224f16ac594e27da966619 . + "None" . + _:N7579e4289b0244808c46bdd32eb87eee . + "None" . +_:N79d06e6ce47f49a097bfef701ad40203 . +_:N826957724ab44793bf01709efcb3abde . + "^NOR\\d+$" . + "false"^^ . +_:N0f6f666d8ee7487a9d7c17aa7ed80a03 . + "16793" . + . + "siiraa@umich.edu" . +_:N4eec6012491f4414873a36beea6c0cb4 "atfdb.family" . +_:Nfb67ce57a0f44f54b1e10500bfae963e . +_:N86c79df87da640be9b95e15c210000e2 . +_:N4230a9e838ea4f1da73859d9b722df1d . +_:Ne739ba7d49e44a29b5ca52526c37e5f4 . + . + "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models." . + . +_:N044a22f95aeb417aae625ef33f90d036 . + _:Nbdbe321b30fd4b7b9a3b6bb44ab3bdbd . +_:N71a35519c51348a489d81324696f210a . + _:N202ad33ee36d4e1ca0d284cb481bd0da . +_:N51298b78bf604154a89e8932f7b1dc3c . + . + "None" . +_:N759ac3708e3740aaa9ade081a84f3fd7 "RefSeq" . +_:N37b65e688c914774b047e5901ec4804c "co_323" . +_:Nf494234c875340f787e0e41ebcc829a7 . + "GT10" . + _:N0c5c6f13dba04e61aa41e35c5d77c367 . +_:N64963c5171cc4298ba2b3d7c8f674f23 . + "None" . +_:Nf7126788d8b94331b0b36353f277a4aa . +_:Nbf3080bb6ad143e18c5bc214bda48c86 "sgn" . +_:N226cb7dce9b6413298eb11eb3021606c . +_:N60be8fe58bc04c61b1598ea960df817c "ONTONEO" . + "None" . + "Microbial Protein Interaction Database" . + "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones." . + _:N285691ac1ef84fc68c4e12b89e22fa35 . + . + "https://identifiers.org/ecyano.entity:$1" . + _:N7e079376a40d4bc8a8fab39e6c2a86e2 . + _:N269469a9bd474b478eab394efaac8a2f . +_:Nf952081e14bc4670a9e6d69f2fa5150d . + "false"^^ . +_:N3fdb5811d37d4a9eb2666d753cb2f658 . + _:Ndc5f848b7f4e4156a2ba11d86b4120fc . +_:N1fce305b786547bba5548a009597a653 "CDAO" . +_:Nbd80b112bffb48d5b2d687dc5db2fe95 . + "IID00001" . +_:N2171494281d940b189f9173d888ac7b5 . + _:N820269b40e62466faecbbca02b104ccf . + "false"^^ . + _:N8d3e7b76c5364aa095d4169d98051503 . +_:N6472b7c7faaa496c9706d5c9a7e0b947 . +_:Na00bfbf203fc40fbb63ecc2527a493f9 "GLYCOEPITOPE" . +_:Nf7126788d8b94331b0b36353f277a4aa "gmd.gcms" . + . + _:Nf63e43b34ec341df9aa4bc8e3d3e6f03 . + "https://identifiers.org/chemspider:$1" . +_:Ndaff5e3409514ca28492409d110bb9a6 "ChEMBL" . + "false"^^ . + "BioNumbers" . +_:N3ac4ecff269f47d299609dab38f43cb6 . +_:N0cd29525d4d04c5ebf701a1eb8af2d5c . +_:N2d77f58044624c2681e6727015a9c1c5 . +_:Nf7aa182e750f4f9ba4de28382494c883 . +_:Nf931aa5914ce46c78d44d69cf925925a . + "International Standard Serial Number" . + _:N0e12672811fb4e589033a49b062f56a9 . + "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology" . + "^\\d+$" . + "false"^^ . + "false"^^ . + "false"^^ . + "https://www.ebi.ac.uk/pdbe/emdb" . + . + _:N4a1d1ea8176843d5819b4aad60ba04bf . + "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome." . + . + "https://www.ebi.ac.uk/ols/ontologies/dicom/terms?iri=http://purl.obolibrary.org/obo/DICOM_$1" . + _:N29bcabd8a02d4a7dbf655ffd140b4249 . +_:Nbc138365347c48219d67bd2bd8115cff . +_:Nd8ba000443424d658d14b228bba91fef "EPD" . +_:N2f06741179c14e30bbc9ebb6d0fce262 . +_:Nd58c6b898a6c45d88f19680160c0a00c . +_:N8ea3b8969db84d00b95c4188dbde1dc9 . +_:Nd9d8d71fe0f445109c512c52ccf34e05 . + _:Nc82f8016683345dbbf212386fd1c94ac . + "UniProt Isoform" . + "false"^^ . + "https://identifiers.org/erm:$1" . +_:N2a0049d3c12c49ff982026591a8b2538 . +_:N95fb0953b0f34245b14692ca00dcc6f5 . + _:N94426dd100154efdb1fd9d2cbc451dde . + "fd8d0743-344a-4758-bb97-f8ad84a37357" . +_:N7932e26556314c34a1abdd233232306e . +_:N9cd1d1d0b0e445f8897b27384270dff3 . + "2639" . + . + "true"^^ . + "https://identifiers.org/snp2tfbs:$1" . + "Ontology for MicroRNA Target" . +_:N536d0cdebd57448a8548e31739dd7cc6 . +_:N656272c74607400294159953e2bc6bb1 "RICENETDB.MIRNA" . + . + "None" . +_:Ne92b5a55ea4948ae8ed5bd896b7994e5 . +_:Nb381c8f829104436a233803b4f678538 "oma.grp" . +_:Nc0ab54e7c8834494a4ad91e220ac2595 . +_:Ndbbf08a0f722427a96424925bbb74fc7 . +_:N32ba8a305ccc45caa246192a7be83bf8 "dip" . +_:N40718bec5b2d4dcea9479edba9b1a26f "neurovault.image" . +_:N1d5138d4d40d4ada821c956b353c5c14 "mesh" . + "Internal OBO and PyOBO Relations" . +_:N057a2faa4307406ea7d53ea9633e444c . +_:Nfc6bdb142017498fad2dd78b18c01382 . +_:N4696a2cb81d04488acfbd975a3bba171 . +_:N91e02b43aa18490f8952c1c4892924e2 . + "Berkeley Drosophila Genome Project EST database" . +_:N8e6a9a8f85cd430e8099266a1c5e8301 . +_:N75b355a4453a454a842dd019070145c2 . +_:Ncea8c147ce8f426da86a9b4f317ae106 "ma" . + "^\\d+$" . +_:Nd65cfb982d5a4c4ebcf4f4c8d5cbaca9 . +_:N1fce305b786547bba5548a009597a653 . + "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures." . + "None" . +_:N79627d04fc054db195c347e9acc6e1fd "neurovault.image" . +_:N40007344bc604057b0f13f267abf5e85 . +_:Nc91fdb6f9d724a3ca5a00a10c35d5d1c . + "3304" . +_:N7ae193095b0d43f9bafd5472ee83a999 "odam" . +_:N80bff3e13c5e41288ae890f663fecc53 "mirbase.mature" . + "None" . + "hescriva@obs-banyuls.fr" . +_:Nfb14c5b77e8f409b807fc76cfdc72dfd . +_:N112c471e69ad4dfcab2b0174e41fe25a "xenbase" . +_:N96ed0b70d7ac4f07a062964bff34cd27 . + . + "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology)." . +_:N2b23a8ecbed54a35b3e9bb60fadf0819 "ICO" . +_:N899244c3c6f84691981e22cffb56994d . +_:N3c9f9153d9c2483cae91a9021e9bf975 . + "p.buttigieg@gmail.com" . + "0000021" . + _:N8aa8089cb5474b5796a93089d0c67a5c . + . + "http://www.ebi.ac.uk/GOA/" . + _:Nbe5f345e330a4e8180397c50c1b91a72 . + _:N2c4e8d870cd549af8fafb07f2260b16d . + "None" . + "An application ontology designed to annotate next-generation sequencing experiments performed on RNA." . +_:Nd55c236bee914b1d84274e08322cdd54 "NDDF" . + . + . + "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored." . +_:Ne98b0da091454eee9cd756a83991a496 . + "PMC3084216" . + "daniel.c.berrios@nasa.gov" . +_:N5cae092f195a4680a6f30fbb020aac4e "MAT" . + "https://identifiers.org/vbrc:$1" . + . + "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$" . + _:Nbbc2a36133e14118a15f9b6d1c468935 . +_:N45aca29a83fb4bb9a80209d6f8584ac8 . +_:Nc9f511531adb4f93bc69f67dd80afb3f . + _:N0f0b9c1def8649e89a6365d94e3f628d . +_:N509871f15f0f4e2da2e7c91601585810 "CHEMBL.TARGET" . + "ArachnoServer" . + "None" . + _:Nb21c28642a61408cb9128902dc3a7d01 . + _:N7a26b0dde44c4a01a35029dbd29c0385 . +_:Nc1e87ec9e0d8472ebc93f2cc48d0719b . + _:N9f6ab38300fa4dd5863dced510bfeb58 . +_:N9fd6f3fc85e744d8a247ea326087e160 "splash" . + "An Archival Resource Key (ARK) is a Uniform Resource Locator (URL) that is a multi-purpose persistent identifier for information objects of any type." . +_:N839f5b9f6e4d451eaf1ef9dafed7bfc0 . +_:Ndec2a71fc31d4e779b53479352e7b943 . + "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression." . + "None" . +_:Nd4c761c6c7dc4b2ebfd69b6065856ac4 . +_:N13e02bf6ddcf40fa9a53f047ac9ab640 . +_:Nd1a86837bf2d4d16b7665d9033e150d3 . +_:N5e125f21b43944f6baf8616e1efb41dd "PO" . +_:N750490d050564bc4b597cd8d938c5428 "funcbase.human" . + _:Ncaf0a4b9b03c4b8fb4e8773e1f11e89e . +_:N84684d603c194259a311d8cbe0666f57 . + _:N4f17083da64e4156a05f2d24d1d19281 . + _:N945b9472bcf34f6b8d9500b340c0b5e2 . +_:N85d987fe12614a5cb0546fb30b21c7be "CPC" . +_:N6db6da6423bc4d25b67887d4a0bca78e . + "None" . + "None" . + "CutDB" . + "https://github.com/insect-morphology/aism" . +_:N78e61a42273d44a3945b9664cdb67499 "genecards" . + "false"^^ . + _:N6598f9494add4988b024ba83da504b2a . +_:Ncf3db61bff6d46e99d5595a4de0f1794 . + "^[A-Za-z0-9-]+$" . +_:N991ac5f9a9774815823cddf2440ee514 . + "None" . +_:N423adc2a6d4041fa9b39304f87e99e8e . +_:N63b50ff859da4c35bc79ed2cfd16dcbe "MFOEM" . +_:N98cf09b87c7544ca9b5c3ed3c04d9ce5 "P4495" . +_:N3e3eacbc026e4abeb5fd8dd4d92b67f0 . +_:Nfad10b490ea648cf91a8547bc48e25c1 "idot" . + "^\\d{7}$" . + "yongqunh@med.umich.edu" . + . +_:Na06c2dd180014d2094d14168c95c9cde . + _:N3044c041ff8e4a9d8ef3046622f0b66a . +_:N1f2283aea700427b94483c979d2e74f2 . + "MarCat" . + . + _:Nf7ac5d114a4147c6a660fac919844aa6 . + "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort." . + "BioSimulators" . +_:Nb6baaf1a91144a9a8f33e1d79fc939bc . + "https://www.ebi.ac.uk/ols/ontologies/hpath/terms?iri=http://purl.obolibrary.org/obo/HPATH_$1" . +_:N3b522cb46ed346fb90b2ca5fb80dc94e "P594" . +_:N7564a1a6fa1142a898ee1118930ebc0a . + _:N509871f15f0f4e2da2e7c91601585810 . + "Medaka Developmental Stages" . + . +_:Ne3997cf237c242438b9ab28759ead683 . +_:Nb6eef29bb1924ca9a085eb3051c0da0f "cst.ab" . +_:N0454b37affda4e038c8d06c8c1494323 "swissregulon" . + "https://github.com/flora-phenotype-ontology/flopoontology" . +_:N71dd678147ab4664bbfc578e83ff87ad . +_:Nb127271f1f94424ba01d9be08542b6df "OBI" . +_:N52faa86f145344ef8440b6e63f6993aa "apd" . + "false"^^ . + "false"^^ . + "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017." . +_:N27e969ef47a44281a75fbc72157ca550 "multicellds.snapshot" . + . + . + "The upper level ontology upon which OBO Foundry ontologies are built." . +_:Ndeefffe214284e008172ddba12f0e5c1 . + "https://identifiers.org/transyt:$1" . +_:Na2abe485b2ca4444b51e680ef2f89df9 . +_:N10cede9fc93e4149a111c779ee7f4af3 . + . +_:N36b3d242eeca4ecc80248c4408cdb016 "TCDB" . + "^EBI\\-[0-9]+$" . +_:N3dfce6339c4447d990ec1fa5c85cb74d . +_:Ne8f8a4fade904a5fbd45934a4076a8e5 "NDC" . + _:N0a31812b3fad4f9f9f3c1f5edea9c134 . + _:N66fd7a4f63a347a19e93038411bd6527 . + "https://identifiers.org/myco.lepra:$1" . +_:Ndf5f55b512144bda9b29b6997dd869d2 "go.ref" . +_:N51cf4fc7cfda46acaab75ead6f264fe9 "CHEBI" . +_:Nb21c28642a61408cb9128902dc3a7d01 . + "http://geneontology.org/docs/guide-go-evidence-codes/" . + "https://www.mmrrc.org" . + _:Ne1bd9c1a0abc4becb989128b2c367f80 . + "balhoff@renci.org" . +_:N9194d61945c14b6b8c969daabe1f050c . + _:Nbdd66b6ba1af4401b9c194c560da6f4f . + _:N15a465d5f82642b1847a855d886e7b78 . + "false"^^ . + _:Nb03642c9ea6a4b5b88ce629411d65756 . + "false"^^ . + . +_:Nbab5d5d813ec4160a367f91a0e549bd3 . +_:N57997db450d3466ea9fc812bf2e7dff6 . +_:Na6b12a3a2e33474b9a0bd73905a7b782 . +_:Nc4dd80a36e214f148cbe353bd5047ffb "GRAMENE.GROWTHSTAGE" . +_:Nd02590a865404912a2f8c213bfeab02e "GECKO" . + _:N4040e1c6944c40cbb4fd717a0c26c142 . +_:Na128b929425b47139fccf49a581d104c . + "false"^^ . +_:N6261bf3c7aa04edfa9f2c1dc5fc91c95 . +_:Nc2abf192253d4c7784675dc8755fa6ea "NCBIGene" . +_:Nf133c37b3c6547e69ffc4745c249187e . +_:Ncd7171f406934084af3afd5c32fe2410 . +_:N76fbd4da362e45179fb96c955303a067 . + "None" . + "InChIKey" . +_:Nd6d1d9333a3044f89652e53000ec71b2 "oid" . +_:Nef04b86438174a12b6dff350264aace3 . + _:Nc410bd1772e241b1879847652cb4ebae . + . +_:N5eb449522ddc45bcae79e376ff6def6b . + . +_:N7fa67ed4257b4cccbae45e610131cb80 . + . + "^\\d+$" . + "MicroScope" . +_:Neeb212598b644712aba55ef96e4c3480 "pseudomonas" . + "false"^^ . +_:N2366dc52b8f24c58a6fe8dd53cd8b494 "dragondb.protein" . + "Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse)." . +_:N5abe586a9a3a40a5b1ebc0b8f1170470 "pubchem.substance" . + "https://github.com/jannahastings/mental-functioning-ontology" . + "None" . + "false"^^ . +_:N3991ca075dcf451f8b3c9900172b3092 . +_:Nf1c99fdd0cd24b3cbe9c83fb1b0a8714 . +_:N881c18eecd944ea3858f4a228961dcf3 . + "4685" . + _:N0202c6819a224e6992d168869a8bd9f9 . + "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps." . + "Complex Portal database of macromolecular complexes" . + "None" . +_:N135138374f76493b853f3fac24fb9305 "rs" . +_:Na1161b67b4e84cfc8d2eccb24120ad64 . + "^\\d+$" . + "http://vertebrate.genenames.org/data/gene-symbol-report/#!/" . + "https://identifiers.org/oridb.sacch:$1" . + _:N187829e6013f42abb745c5d1914e8799 . + _:Ndd127b9ef073421cb1d8e7e3598be65d . +_:N005d24db993144cc976862b884b3cffa "orcid" . + "Coriell Institute for Medical Research" . +_:N0b3c9abeb49a4d77b36d2b8c31c9f97f "merops.inhibitor" . + "PathBank" . + _:N98dc1f55a303402c8e42b081b6522fb8 . +_:N7c0a5be67b964aeb90114c3d5dc0c0fd . +_:N40007344bc604057b0f13f267abf5e85 "VBRC" . +_:N1bdb3eee7f384195a54508956df78ec8 . + "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies" . +_:N717ca6d2814e4ef1929a38e9d5017c8b . +_:N45badbc31f5a411c801f780cd95125c7 "SUPFAM" . + "Database of homology-derived secondary structure of proteins" . + "^\\d+$" . +_:Na07de80a99aa447eb45fe60ce3ac2625 . +_:N1114af658b8849c7bcf120b9138f9262 . + _:N809c3ab6cfc6451ca994fcfbb2525c24 . + _:N2deb41c404eb4459a20814454ff42b53 . + "Genomic Epidemiology Ontology" . + _:Nd7af4c542a2a4a82b18efc93a4bc1d4d . + "helpdesk@cropontology-curationtool.org" . +_:Nc23aa18cba354cd0b8e67c7b6c6c83b2 "BTO" . + "https://smpdb.ca/view/$1" . + "ArrayExpress Platform" . + _:N32cf077ceb9f4247b8ab2ae0841409db . + _:Nc74bb1a1900a477492d0713423e882f7 . +_:N3c0a6a09bf6f49fea5846e46cf512bd3 . +_:Ne6b18db105c74a33b4472b8d24f4a638 . + "UniPathway Compound" . + "^\\d+$" . + "https://identifiers.org/signaling-gateway:$1" . + "https://identifiers.org/rfam:$1" . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra." . +_:N3d51ddc8573f444c9c4f1d882a811b7d . + "https://identifiers.org/reactome:$1" . +_:Nc4dd80a36e214f148cbe353bd5047ffb . + "Transcription Factor Database" . +_:N345bf0e665af44aa9d997429871df789 . + _:N4dce410c17c44a389b606ae745fc7f9e . +_:Ne78b15ff7e0e437ab5e3000eb641cbe6 . +_:N11c317245c0b429d94b1e0d55cfe3551 . + . + "None" . + _:N4b8040cff25e44fd8b2bca17a798a5be . + _:Ndf7e26d289e041c2abb04859975bee27 . +_:N99d7c4231c4e41bf8e8bc314beb93a21 . + "992" . +_:Ndaaa12bbdd6c4f4da590d8aa200cfc77 . +_:N800e5de3b3554437a7c28aac7a4d1da0 . + "None" . +_:N60a7f0e71cb645b1ad9176fe2cebf771 . +_:N12c109098ec7423bad745776bb38f022 . + "jrsmith@mcw.edu" . + "true"^^ . +_:N622a7778f7b14162accd9c403fdb5f91 . +_:Nbbbb026372da489baadb376a52feec1f . +_:N122d02017f7445c5aa11794d28996ec0 . +_:N1dac07e93cf246ec99621eae7e6409af . +_:N166d2b0707fe4488b011c77ad5c67963 "sugarbind" . + _:N1c4b9df7d2f8461cacd3e6a44c49b9c1 . + "false"^^ . + "https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv" . +_:N0169e4999f994aeb8197bdbafec9b206 "nmrcv" . + "true"^^ . + . +_:N60bdb6f62c914c2688809b8c0ed4d0c0 . +_:N1faa6b5dd0a64f45b491b2ff735e3639 . + "false"^^ . + "^([A-Z]+)?\\d+(\\.\\d+)?$" . + _:N9f58eb2dd67e47c1b4203257529a1065 . + "false"^^ . + _:Na7f5c8df559a4cb79c7069d14136c584 . +_:N424756c79f534aaeb40e173ab5597e77 . +_:Nd66811e5c0ce405f80e26845a04c7464 . + "false"^^ . +_:N19159d206c124ea3b5a68f64e47bd6b5 "CAZY" . + "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum." . +_:Nc1e85fe48d6e4c9696eec3317dbff513 "protonet.cluster" . + _:N7ed2a7767af0445c98afe25e05c38eb5 . +_:N8edca9bf35e242e98110972591f8eced "yeastintron" . +_:Nd36d36c03f5041f5b3bfad3fd819d9c2 "covoc" . + _:Nc04d65c6d17c4aacade086e676f6ba2b . +_:Nd9f28dc9542d407c931e6459f926e797 . + _:Ne5abbadd1e1146e4b053d1f85d156dd5 . +_:N3c06a7d0a6f54e3f940146e2f1ddf077 . + "false"^^ . + "KEGG Pathways Database" . 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"true"^^ . +_:N3d8196bb244642f89f49cdd7f93fb992 . + "http://variationontology.org" . +_:Nd90314d82fbe4893855788a96f7d5324 "BITTERDB.CPD" . +_:N1c4b9df7d2f8461cacd3e6a44c49b9c1 . + _:N146d4ed0323a4445aba657362eec2209 . +_:Nc3da6d65562e42ac9baeac0e84ea1827 . + _:Na9cabeb8f977496483ff483a3cd2645f . + "None" . +_:Nf5dca0c53a32426ba5624f5432cd9803 "TAXRANK" . +_:Ne8e6b92a357d4087a11314b6fc56b6f0 . +_:N4b9c015ef7c8401e8448a715b201ce6b . + _:N3eda0f9c1acb4d59814e8b5b833e0dd0 . +_:N0911246b45e64e239992abce57091627 "GRIN.TAXONOMY" . + _:Ncf095d3632bd41c386679905cdc3f692 . + "0058" . + "4544" . + "None" . + "Ontology about C. elegans and other nematode phenotypes" . + "false"^^ . + "SwissRegulon" . +_:N17f7ee79c8d948f3b2e54fce61d96dd3 "MDM" . + _:Nc4ed6289c3a14b80906d5571b50818ea . +_:N73b31b692997431387a08f0938dde443 . +_:Nca5614f64e7d489fa89bbc308bd8d291 "narcis" . + "https://github.com/obophenotype/planarian-phenotype-ontology" . +_:N4319ca1129624791a30168f78221f40b . + 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Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms." . + . + "helpdesk@cropontology-curationtool.org" . + "Bacillus subtilis genome sequencing project" . + "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products." . +_:N2f6cfb400f6e4844a8ee071c612fbe29 . +_:N146d4ed0323a4445aba657362eec2209 . +_:Nb8ed4b26225547869cd8e00e90427a7d . +_:Na7d0740be17d43669e11f88be73e54f9 . + _:Ncd11b4372c99419dbace89d888d6520e . + _:Nace1a7e21ee043f29ae929dacd46f4e8 . +_:Nc8dcd652c91f46be9698e18322908dd0 . + _:N794a3035514a46ffb8b213a1714fbbc2 . +_:Nd05b0508ad72487c8e6a7b8ea798f7f9 . +_:N47ab278a23ef4431bbc212d37b2cffb4 "obib" . +_:Nb9f9862e4d19401b88b992576b79ee08 . +_:Neffe489d8ca4421c84745a9cd2a7cf5e . +_:Nf03fb811408b451cab00390f5a375d78 . +_:Nd74728cb9508436a9cbf4cd6a0701c9c "ecyano.entity" . + "oct 2016" . +_:Nfec4e4a6ee8546e8be40accd68f26d7e . + "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$" . +_:Nfef5796faf964fecb01d5059838f3ff4 . +_:N55358003352e42f4b0440ff38c0d23ab . + "BiGG Metabolite" . +_:N56bc08278d364f4192fe6ce4b2103c50 . +_:Ncba8f9df0033412f84fcc18df8abab97 . +_:N9cd1d1d0b0e445f8897b27384270dff3 . +_:Na2abe485b2ca4444b51e680ef2f89df9 "qud" . +_:N52faa86f145344ef8440b6e63f6993aa . + "https://identifiers.org/ccdc:$1" . +_:N984648f01f624e8592e8f1d14da97e15 . + "jrc-eurl-ecvam-chemagora" . +_:N79072d7d1cfb4b7d8f8600c0a91d4c8a "biodbcore-000989" . +_:N51b9555d52774d41be34b2033225166d . +_:Ne80a8417b03b484ca5e9aa69d0489fad . +_:Nb785409ba42747c0bb4ca39eb6218187 . + _:Nf1ca5b113a6e487b86cecca493e8dd7e . +_:N834877a0b3cd49798da47b540665245a . + "0007807" . +_:N2deb41c404eb4459a20814454ff42b53 . +_:N50c1c070b34a45948a3d3be2872f9b40 . + "PharmGKB Disease" . +_:Nb875ee702fde4066a5774fe232aaaec7 "BFO" . +_:N4442d33de0b64131a04b90b8899950d6 . + . + . + _:N73df4db795244208909f2a3424000513 . + "An ontology to support comparative effectiveness researchers studying claims data." . +_:N3f89482dbae84bc4b2255ea879614575 . + "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element." . + "H3.03.00.0.00007" . +_:N86a33aab224f4bfc8428c1107a64bdb7 . + "true"^^ . +_:Nfb14c5b77e8f409b807fc76cfdc72dfd . + _:N725967693a2547549370205befcd2dc5 . + . + _:N70eb0749dd6a4cb7b494767f9cf5052e . + _:N59aa946b5b254fcf9bc519ff2b45513c . + "true"^^ . +_:N1bea2f090c09451188a62e4251b8af4d "CAS" . +_:Nde98f3e8254d4bb79611b229db311f7a "gramene.gene" . + "MultiCellDS Digital Cell Line" . + _:N6f3ba733aa9a4f2fb8e817909050b1b9 . +_:Ne76919bead074849ac7560db0fd06a5b . +_:Na7b4be97d7024cc79f78ac88dfbe741f "gmd.profile" . +_:N899244c3c6f84691981e22cffb56994d . + . + _:N776b4781d4df427d9ea4477f4663d65c . + "https://identifiers.org/ega.study:$1" . +_:N96d50ada165f43239347a3911fef3a96 "LOINC" . + "^CE\\d{5}$" . +_:N4320457477d64cb8a02d58c552439134 . + "Agronomy Ontology" . +_:N76c00db8ef44470c8db7626f50ac7469 . + "https://www.ebi.ac.uk/ols/ontologies/om/terms?iri=http://purl.obolibrary.org/obo/OM_$1" . + _:N658302102dbf4549b3bba90e9a3066a9 . + "https://prosite.expasy.org/" . +_:Nb74cec01d13e4169afd359ffa52ee0fa "cath.superfamily" . +_:N9209fa1bf1f54d978b038d3ecf853153 . +_:N29a65518c1ec40fbb4e7de75f39e2e8c "grin.taxonomy" . + "None" . + "50018" . + _:Nef961de87487406f8789c84d0cd7e574 . + _:N9cea9c81be6f4e299f214541794b6fec . +_:N711480100f0345e1a57dfc0e8943ea53 "mmdb" . + "http://www.ncbi.nlm.nih.gov/" . +_:N4504e5cd520a46f08688bf447a0a215c . + "https://identifiers.org/envipath:$1" . +_:N949e91ceb5954ba1a1f2fb725a99911e . + _:Nd1792c902ef14e6380eb65dede96e971 . + _:Nd8707932d0e8475cbbcbdbbcfd2f41b2 . +_:N5591cc074ff34bacb64e5405ad176dcf . +_:N7f36ee1f759241038a793ff9a2bca20f "ark" . + "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features." . + _:N2a4d705f23374ec2bfde74cd426e8090 . +_:N41e4c000c46c49368ce1d19e9ea20d6e . +_:N9664a7d6ef954190b1c77e2ac3044605 "vfdb.genus" . + _:N2e739d579ff54254a1d6400afdb19709 . + . +_:Nca1d8a25db384622ac2386b38baf9fd2 "GEO" . + "DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides." . +_:N6a1ef76f4be248d4b33f222268ad117b . +_:N4aaa4fc21d4e41f7a12672842f9ab9e5 "P231" . +_:N3afdacbcad414f0ba516d1957b9bda68 . + _:Ne0c896ec02d74d0a890f6e1583856eef . + _:Nd3f7c3a1ffdb4a509f0829395862ecb0 . +_:Nc2fbabb480c14aa1857123b74bc9d189 . +_:N56ee88f98f5246af92269006d0fe1ecc "P3289" . +_:Nca6b27c8755e4fceb590f12deaba6617 . +_:N5613984adcb348139db2d0f9061ba0e3 . + _:Nfd72bc7032174dca8d111cf42d4417fd . + "dr.sebastian.koehler@gmail.com" . +_:Ndec2a71fc31d4e779b53479352e7b943 . + "https://www.phe-culturecollections.org.uk/collections/ecacc.aspx" . + _:N239890447b5949498bee92396c4169b2 . +_:N27a273ff07a043ceb16bd6689b62959d "tair.protein" . +_:Nc4894a582f0e4401bc4160cb75add960 "PR" . +_:Ndcc44a474bfa4de4ae724df3ef6dec24 "P496" . +_:Nc8dcd652c91f46be9698e18322908dd0 "Orphanet" . +_:N18d1a4c7053e487dab802c4358633aa0 "PDRO" . + "Paleobiology Database" . +_:N93de351c5d0a433e9a3e4b963ac9f8db . +_:N89b1ab1d5ad24707b3e19f0dd394f7e6 "wb.rnai" . +_:N3e528d3797de47bba86d2ab40196e725 . + _:Ne29254c63a404a84b5b1ff429fc6999c . + _:Nba92a07344c4470292fff1ddf67fbe8e . +_:N78520561e09e4916b60c464a80ccaf3c "ark" . + _:Nae717fa3f839400db7a655c60380ca3c . +_:N14c08727ee9f4d11bae8c77e6225b180 . + "Genomics Cohorts Knowledge Ontology" . +_:Na9ac292012944664887b4ab7b51978db . + _:Ne0c109e23c3949a187bf6db11e6d9c1e . + "false"^^ . +_:N86b64e5764044507b31fa88542c1b2b7 . +_:N70139ef06c9b4eeb9a948a9857ae5a5b . + "https://identifiers.org/sugarbind:$1" . +_:N9ac8a3e20d46453d8f50b1222834b6c0 . + . + _:N90ddd29a109248cdaff91a27f86c46af . + "false"^^ . +_:N162eb5e296a046049ea6203e29c01aba "CID" . + "Basic Formal Ontology" . + . +_:N9068c2d7575f452a8f349467fc8a1222 "eu89h" . + "BioCatalogue Service" . +_:N808a59fc699a4343bb7c0814f83963d7 . + "^\\d+$" . +_:N139ae57b88ad4cfab078c5661d71ff31 "FBcv" . + "Allotrope Merged Ontology Suite" . + _:N2d60432c616b4edc9fd039c65b8ae5ef . +_:N667ccf0d4f1c4d2a87ea3cba1db6032c . + "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target." . +_:Ndb9b7d5b54fe413987b692fe15e9be23 "kaggle" . +_:N2097ef34229945e49001ba9255ceed45 "doqcs.model" . +_:Nd458b6010f6b4a1799c200028d6c12ce . + _:N363562ae495c440695526cc2d8d5d78d . +_:Nf549131f774d4d91aeb792bd31dba447 . +_:Ncf9c4e20ea9b4b77b552ec63e79b4e9c . +_:N7564a1a6fa1142a898ee1118930ebc0a . + . +_:N72306aebbcab4125b79c078ec85f822e . + "728" . +_:N89ecc392a94642438a2aa9b57419a392 . + "Database of Quantitative Cellular Signaling: Pathway" . + "https://identifiers.org/probonto:$1" . + "stoeckrt@pennmedicine.upenn.edu" . +_:N0b681a875856491ab7747eb6afaf6cbc "panther.family" . +_:Necd37b11f2df40d5b7e5b916ab4616bc "XPO" . +_:Nef41afd929994c2995c18098fd7a9d16 "eu89h" . + "None" . + "http://www.cropontology.org/ontology/CO_320/Rice" . + _:N21754c88bb2440e1a3b2a2596876536e . + "^TTDS\\d+$" . + _:N492d8b595fb24237a04bce5fcaa28c93 . + "G protein-coupled receptor database" . +_:N13be46b2193c4f5b80a386246e86cac4 . + _:N48358444510c4641bb66d3246ae30b9b . +_:N9813954146124bde8e11424bc6ede5e9 . +_:Ndeefffe214284e008172ddba12f0e5c1 . + _:N0146e927f987485bb576161c02fc7b8e . + "None" . + "http://www.ymdb.ca/compounds/$1" . + "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities." . +_:Ncfdce173db2047a6a4f6e83d56ba5e9f . + "false"^^ . +_:Nb415e3f46a784bd3a81f5790298424b6 "ydpm" . + "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . +_:N57974e5fb46c47f789710108686ae232 . + _:N254320dde07542bd8f5f44f41fbd180f . +_:N57a7d67e4a9b425b9b8cd7319931c020 . + "false"^^ . +_:Nd8569863234046bda21946867c958e0d "gold.genome" . + _:N3de3ff078c054ce7a6cacbba245a5200 . + "The VIAF\u00AE (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web." . + "false"^^ . + "^([a-z]{3,5}_)?M\\d{5}$" . +_:N2979938d7b634a3a9e1a59c1f253387b "flowrepository" . + "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis." . +_:Na9dcc74989624a2589d1f5c4c423c142 "INSDC.SRA" . +_:Nb21c28642a61408cb9128902dc3a7d01 . +_:Nb41f2e48d2e14d31b830d0bbb18385d7 "ENM" . + "ENSG00000169174" . + "Gene Ontology Annotation Database Identifier" . + "^SAM[NED](\\w)?\\d+$" . + "None" . +_:N79102903d6984b6e869d233f5faa8f51 . +_:N44f120792a474404b940746620a6c6bb "doi" . +_:N542393045dc547798b7494d2c2b1c2d9 . + "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch." . +_:N372eccb23ea144b1a24154b889f74a4e "metacyc.compound" . + . +_:N4418062faa734449ab3bc1270fcc5bc6 . + "None" . +_:N307bc5e5705a46ab8249f6a51548e02b "owl" . + "false"^^ . + _:N68f0b6b0f167418ba7e9cca96697dd04 . + . +_:Ndeff8991108b45f3967d4b0e7bc55f5a . +_:N9c55effd3a384cf3a938f05e0e18f398 "pombase" . +_:Nf5e729df716849a7b307ea7f091a6869 "BUGBASE.EXPT" . + _:Nfdca8cd53df0492fa467d904eb20c195 . +_:N7447f17e798641e18616d6fa31d1e4b6 "CCDS" . + . + "Phy000CLXM_RAT" . + "4214" . +_:N015713ab9c334a90809010d27ef10169 . + _:N43c9c690a48c4e658126458424ab7fd4 . + . + _:Na849e2d5eb284c13a154741aae47d252 . + "true"^^ . +_:Na2a6893f33914e95baecc00eef17a588 "zinc" . +_:Nba954ffb4abe42c9bae4fb9478d22466 . + "04240" . +_:N24eca749706f4c7e8468f5ceb566db37 "lincs.protein" . + "BeAn 70563" . + "^[A-Z]{2}[A-Z0-9][0-9]{5}$" . +_:N3ad59e42043d4cf88f9a2ce1b9b6f16c "HANCESTRO" . +_:N1d2eacc818094384b0c873f04decc7bb . + "https://identifiers.org/oma.grp:$1" . + "None" . +_:N7ceeb713ba45458487ed25c7730e032e . + "^T3D\\d+$" . +_:Nf549131f774d4d91aeb792bd31dba447 "DOI" . +_:N6b8b9d899d6749b29e6dbf371dd5ff31 "TARBASE" . + "yongqunh@med.umich.edu" . + _:Ndd8265a488dd4993a5a32f66b8ee6445 . +_:N42ed030fcd494e138ee0fcefb8b43ba3 . +_:Nddb831a47ae34e56bb4738544ba6e387 . +_:N54baafdd6440408d8929019bc020d3a5 . +_:N48a2099964e74bbaaf167dfb18fa9f59 "ccds" . + "CTD Gene" . + "^LOC\\_Os\\d{1,2}g\\d{5}$" . +_:N26889da119294fdb9b088f308afdcb85 "ndc" . + "SABIO Reaction Kinetics" . + "Gene" . +_:Nfce3de0116f444de9c234e245fbba73e "srao" . +_:N35f4354a663a4f49ada249323642d768 . +_:N7d31d5a689194d8da7b2a6bb65634dee "hgnc.genefamily" . + "16333295" . + . +_:N1293f73624ea40d290b3f3c140dd59da . + _:N6e02c3b2f7f9423bbd0f453754a89970 . +_:N38e64c41920e4159ab87e0bc28a1a430 . +_:N36ff76a49e9e4184afdc3a8b64d840b2 "BEGDB" . +_:N168db5aa638a42f8801c8319f562791c "CTO" . + "false"^^ . + _:N741b002591c84018a4848d5aa4d3d1b4 . +_:N0c6d2fa4df874c1f8ba12536170db208 . +_:Ndb791e987bc74ca1a2d1c80cff67dabb . + _:N75f2fb47759c4edd923892aa39f5416b . +_:N2117d326d9554a74a9a0c534de46de44 "OLATDV" . +_:Na3e73f719eeb4cec80fcc44f553a7f6c . + . +_:Nded113b7b9344ff5812d3aca79d5c320 . +_:Nc0f552779baf4b719bd84b25e682ab38 . + . + "^\\w{14}$" . +_:N5dd40a9dfe234ba685da08cfdb795448 . +_:Na032a97bf22547cdad8ea77c5ae5a02d . +_:Nd04d0d87761c4c4181a5b3d58ebaf355 "sio" . +_:Nee375e455aa346818ff573edba18cc1d . + "https://identifiers.org/rgd.qtl:$1" . +_:Nf68d350653f841409286d87c9ce82589 . + . + "https://identifiers.org/iuphar.receptor:$1" . + _:N49d788d083e74a20a4d40dd53e7bee94 . +_:N9834464effb3400681dbebe097d8dd77 . +_:N3f9e612076734012911d0a2e45420c96 . +_:Naf2474d9e6fd44e3a11f4ef6b3299840 . +_:N7f5a30b414964015809a1dff862fff1e "GO" . + "A structured controlled vocabulary for the phenotypes of Ascomycete fungi" . + "None" . +_:N3d51ddc8573f444c9c4f1d882a811b7d . + _:N9e39018a1f1b4702b07b3fa6022eedb2 . +_:N131f6f5e08fe41ecaae9f74fb8cb9710 . +_:N71ac685141744792b168de63c2609c13 . + "^\\d+$" . +_:Nd17fdf20e3ce472e8d142b9b91c40b05 . + _:N306744fd6891485baa0314f63b446431 . + _:N388173c734e04915b1a46269608ab6ee . + "http://purl.obolibrary.org/obo/ncit.obo" . + _:N90d257235fc64a51896afe120435496c . + "http://www-is.biotoul.fr/" . + "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors." . + _:N9cd1d1d0b0e445f8897b27384270dff3 . + _:N94f05aac83ca4ad28bd56ce6349e4fae . + "^[0-9]{4}$" . + "false"^^ . + _:Nb458d227e2304499b8e84fe01d9aa1b1 . + "^MSMEG\\w+$" . +_:N46d2f9848ec74b80bc4e8c1a95f5fd18 "amoebadb" . + "false"^^ . + "false"^^ . +_:Nd09f04b4adc64cf880e693d03603511b . + "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species" . +_:N39833ee89bd347a6aeba7353b4dfcd77 "clinvar" . + "^\\w\\d+$" . + "Electrocardiogram Ontology" . +_:N72c36336b67f40fe8797ce2f926cb00d . + "carrine.blank@umontana.edu" . +_:N09239cf8262c4eaf9e2386a97faadbc3 . + "https://identifiers.org/cath.domain:$1" . +_:N8c177aff19574296bd14b874e356d31e . +_:Nc82bcfa378474e28b59688ef4a3802b6 . + . +_:Nfe7b12fc66a5488dae523a179a0e0356 . + "Cephalopod Ontology" . + _:N516e407347ae4749ab2231b04742eb04 . +_:N95fb0953b0f34245b14692ca00dcc6f5 "PMAP.SUBSTRATEDB" . + "https://github.com/BgeeDB/confidence-information-ontology" . +_:Nab5a3a77c6d946acac03d8d92fa8d745 . +_:N9b7038963fb443e589f1f41412625cbe . +_:N8100f09f4a4b480eba05701cb43859d6 "oridb.schizo" . +_:N60e999adb28748a09eafec120964b4e4 "kegg.genes" . + "0000001" . +_:Nbf5387235ae6425796f549b9f0dd485f . +_:Nd4ffd9ab70c84e4f834270290d94a8aa . +_:Ne61c31f0777c487cb961657663152195 "dictyBase" . +_:N1af2bdb842d34bf0b623a4afc9535664 . + _:N6b70dee5422f49a9b89cc06cab793bb1 . + "false"^^ . + "https://identifiers.org/kegg:$1" . +_:N2bff70e3c5894552b5ab5384c6285eb7 "gdc" . +_:Ncca253885cfb4646b321ca366f542844 . + "NONCODE v4 Transcript" . +_:Nbcdf360f10c744c4b4151f6ed946e80e "FSNP" . + "None" . +_:Nc2e25b9504024b1c961b5377a81007b2 . + "None" . + . +_:N9955b7b5cfe8458f96e70207f051240f . +_:N4a964e50e172432499244a2a656473a4 "gsso" . + "None" . + _:Na3789ffd6a9d498a85a282ce00dc2f8e . + "https://identifiers.org/vbase2:$1" . +_:Nff2b975dad774c0c9c2ec8441d38dfe2 "unipathway.reaction" . + "false"^^ . +_:N46add195817a49598aaedcaed4274071 . +_:N242840184b83435fb18a2689dbc145f6 . +_:N48f78e6d0955474a9e3220fa58c5b55c "ZFA" . + "^[A-Z]+[0-9]+$" . +_:Nfed4de3661b84648b10daf36aa6283d5 . + "^\\d+$" . + "^GPST[0-9]{6}$" . + _:N8851d4dbf2fb49e5bf0de00ab3119041 . + "NX_O00165" . +_:N39833ee89bd347a6aeba7353b4dfcd77 . + _:N1edfccad176f4aa09c8d5e8cca9e4b78 . + "false"^^ . + . + "https://github.com/monarch-initiative/SEPIO-ontology" . + "Linear double stranded DNA sequences" . +_:Nef4e4f1daa5a42519ee95b2f05239a15 . + _:N020abf6bfce54d76bb9366614aa89b39 . + "false"^^ . + . +_:Nd45a6d688de24e94896e0b082f10e365 . + "https://identifiers.org/google.patent:$1" . + "false"^^ . + "false"^^ . + _:Neca7cb8c0122483d978a9d352217c03c . + _:Nbee52ce82174462c8e862d934ba961c0 . + "FooDB is resource on food and its constituent compounds. It includes data on the compound\u2019s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds." . +_:Nc23aa18cba354cd0b8e67c7b6c6c83b2 . +_:Nf85abce4160e4011b1d27f4130b6c2c7 "dragondb.dna" . + "false"^^ . +_:N67c70e69948b4b04909cd08115ebd1b3 . +_:N92c0d88a7a804053b19ceebbe80a1000 "RXNO" . +_:Nec1c6d13a5f64547b65e854ba171d8cc . +_:Ndaf5ba0656ac494bbb57c71dcb090221 . + . + _:N7d31d5a689194d8da7b2a6bb65634dee . + _:Nb3e43bdf576a427cbd4f0ae69a61b381 . + _:Nd4fb9dad5ac749869a9e97d671935e6c . +_:N9280ba9491d74bc2b799d361c62ea5ac . +_:Nd81a4dc4e732489f9ffc3d0554cc67de . +_:Nb3d50b8db9184f2dbfabb4083d9eaaee . + "65" . +_:N222e2ee8a6774a23be7daf7549f7edcc . + . +_:Ndfc7ada3dcd94964906539f710708cf0 . + "https://identifiers.org/dlxb:$1" . + "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications." . + "World Register of Marine Species" . +_:N37dcd37869d04075ac14a42ce6c901ad "idr" . + . +_:N5e3034045dbe4c0f8af997c603a4ed17 . + _:Ne622fbe53310440e862f54ca6fdde788 . + "0000001" . +_:N1d3fa651d95842c3b2402419b8ec1dbb "ngl" . +_:N52d82bf701a046d29c5dbd5f511e5e52 "GEO" . +_:N7f9fee758f5d4e23841b7cf61492dfa2 . + "false"^^ . +_:N0454325ce9ec44b1a18750de59970986 "mp" . +_:N46e39a8d4fcb42838e3fb0cc0da28c21 . +_:N67443bb5b82346b4b8273495a126f3c2 . + . + . +_:N590075a9bef648309a3a11d26b03f5ae . + "false"^^ . +_:N848215682e444edd9d30fd15b9036539 . +_:N145c70201436477abc8250897e5ea694 . + "https://identifiers.org/bdsc:$1" . +_:N52aa22a0bbda4d4f920831f665516a1a . +_:N9030a1777fe14c53a6faad91e1a0fa53 "mod" . +_:N6bb922e3c2fe42628987e94acd67249f . + . +_:Ndb9b7d5b54fe413987b692fe15e9be23 . + "https://identifiers.org/mirex:$1" . + "^\\d+$" . + _:N5f9e2cddcf1c4dc0afc6b5ea2df42661 . + "^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\\d+$" . + "http://purl.org/dc/dcmitype/$1" . + _:N552d2e802ff14b3ebf6fbaece4567398 . + "false"^^ . + . +_:N728ce796275b4863964b48c17902e518 "NEUROLEX" . +_:N1ac7404b56fc4e358b3e21a9b03f7763 . + "^[CD]\\d+$" . + _:Nb41f2e48d2e14d31b830d0bbb18385d7 . + "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$" . +_:Ne145950fa2aa45b38647a9ef2f2adbe5 . + "https://www.ebi.ac.uk/ols/ontologies/co_324/terms?iri=http://purl.obolibrary.org/obo/CO_324_$1" . + "false"^^ . + "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc." . +_:N637ba7877ea84cb6a79517357caa5ca6 . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs." . +_:N15a465d5f82642b1847a855d886e7b78 . + _:N5e125f21b43944f6baf8616e1efb41dd . +_:N5f61c955b8e844d8880129ef1306fe32 "VBASE2" . + "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$" . + _:N065c8d4b17f34b7ebb306b731394ae34 . + "http://matrixdb.univ-lyon1.fr/" . + "Ontology of rat strains" . + "None" . +_:N8af197dc8365447ca6e8d44a51ecde4a . + "MAMO_0000026" . +_:N49f2ebc6b927488b99f758efa9b71187 "P7333" . +_:Na5b3858eb28c4f54b8e93462535b8508 . + "https://identifiers.org/phosphopoint.kinase:$1" . + "https://identifiers.org/neuromorpho:$1" . + . + "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms." . + _:N3f4df2a15c87461f923bb0a06031c1b4 . +_:N9e3328d4ee5e4edda7e54d688de69a31 "LIGANDBOX" . + "000017" . + _:Nafd05e5d8008495094f123c705d1833b . + "PolBase" . +_:N1548722f7e2744d5bcda937ccfc28309 . +_:N26e059824d9c4319ba8f360e20cf38fb "GSSO" . + "false"^^ . +_:N8087e5df8dcf415ba0ab62206a4e49c1 "rhea" . + "CE28239" . + "None" . + "https://pathbank.org" . + "Fababean ontology" . + "P10636" . +_:Naee6ad67a64a4d8dbc7cc569f247b349 . + "E. coli Metabolite Database" . +_:Nbb28e523aa2f44e9bfd9f9d3e772d88d . + "https://www.ebi.ac.uk/ols/ontologies/chmo/terms?iri=http://purl.obolibrary.org/obo/CHMO_$1" . + "^\\d+$" . +_:Na519e370be7743ceabe180b384f2a0db . +_:N98c8e2020b834bc5b07ece4655137ad5 . + _:N09dcabf190bc45b98a7c996229f60a49 . +_:Nd7e7405d791c45908c3a9d354fa3f281 . + . + _:N3a7f3921409842fca32fbd8fe2dc9dea . +_:N0db4a45cf66e454084a841ef77f1a0d1 . +_:N7a7c46fe5fbd4092bdf2af3429d887ea . +_:Nc28c7af3c1634cbcbf197adfefa02c7c . + "http://omit.cis.usouthal.edu/" . +_:Ne98b0da091454eee9cd756a83991a496 "FAO" . +_:Nb8b60dc00e9c4a729e546e811c6cc1ff "sitex" . + "None" . +_:Nbbc212293c174933abac640da15960c0 . + _:N7b71e25f39bb40f6a44760cdcd7407e2 . +_:Nd37d7bca37ca4048a7a659d734bb3a12 . +_:N8a1c552d2fc34483b924ae1f6e9fb79b "bcio" . +_:Na9ac292012944664887b4ab7b51978db "GWASCENTRAL.PHENOTYPE" . +_:Nf0c42a4c56bc462a81021e592631db44 "bgee.stage" . + "http://www.genenames.org" . + "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Prot\u00E9g\u00E9 frames. BioPortal functionality includes the ability to browse, search and visualize ontologies." . + "https://github.com/monarch-initiative/GENO-ontology/" . + _:N97c62620ca16409fa4c3747e12e4da93 . + "https://identifiers.org/jws:$1" . +_:Nbbbb21222628430dadb9d4f764642665 . + _:Na07a0e1f9a514992a9d3a9d551f50a6f . + "^PS\\d{5}$" . +_:N5abb71e526df4844b17eaa97cf83c0fd . +_:N04436163e681432d8234a61f0b957ce1 . +_:N6771101abe0244b2a2b972a500ff4849 . + "false"^^ . +_:Na4a049dd5cbc49c59471439e68bb54f2 "pfam" . +_:N991ac5f9a9774815823cddf2440ee514 "FBbi" . +_:Nd4670f4d3e914ef9b3842ff61c1f8914 . +_:N365e340e00564b1ba3ce76b90304dd0b . +_:Nd3eba3ebb05e4a818cdd04ce8a31cbe1 . + "^\\w+$" . + "2gc4E" . +_:N2dbb8c291a384f878fc5c9f1a9ff2f51 . + "^\\d{1,5}$" . +_:Nd6cb0bb3c3de40c09d4c0327f8996b60 "CLO" . + _:N22771823a3594304b5bf38d38fea81ae . + "false"^^ . + . +_:N6b943f2c7ee942d3ad50bc555fa485a9 . +_:N54f3402d9ad1426485a4e535eb6cdf98 "apid.interactions" . +_:Nb8ed4b26225547869cd8e00e90427a7d . + "AT1G01010" . +_:Nc3ca6ab2f76c4e93bdc3c6a1953e1c06 "mro" . +_:Nd29c2bdd613b409fb8500e0ac48880e4 "ohmi" . +_:Nb9f9862e4d19401b88b992576b79ee08 . + . + _:N5d636c0fef24467994c25a000edc8541 . +_:N79a616c455804ac59e4ef20dac34ba8d "beetlebase" . + "Protein Ensemble Database" . +_:N299381a71bb240c9956e7c18d79c2c52 "planp" . +_:N59aa946b5b254fcf9bc519ff2b45513c "gxa.expt" . +_:Ndec3f37cd9044bc8b1fb44fcf54b2b7c "MF" . + _:N4f88af56a8b642e49e24184b4c4db4b3 . + . + _:Nb73f04a5fc6c4d27a6807072bb7a6c04 . +_:Nfd1a6e0b22d64f11ab9b4a212ca4b82e . +_:N55358003352e42f4b0440ff38c0d23ab . +_:N58b533132874457bad1ced712d51fcf8 . + "https://identifiers.org/caps:$1" . +_:N50ff1c8461eb406f98b3b83ac7375080 . + _:N647202dfb0164e4fb092136b1a1e144e . +_:N0127cafdc411485280a041aab3123709 . +_:N000df9d421ec44b4827291b1912bbbdd . +_:N534fba2da0324761a73c3c7d219bfd1d . + _:N44c742fb19b5427c8d54290acabc6fa8 . +_:N6e7b913763004999855db336399a53b9 . +_:N8265be4e39864793b3a8073551ad458e "FLOPO" . +_:N0c627110bf0a4d58b03b4cdd3b1127b8 . + . +_:N45aca29a83fb4bb9a80209d6f8584ac8 "GDC" . + _:Nc2fbabb480c14aa1857123b74bc9d189 . + "Platynereis Developmental Stages" . + . + . + . + "A vocabulary of taxonomic ranks (species, family, phylum, etc)" . + "false"^^ . +_:N9922564816cd43a2983729532f81e17f "RXNO" . + "https://identifiers.org/kegg.genome:$1" . +_:N834877a0b3cd49798da47b540665245a . +_:N30620bc76862481384d7735e16c61852 "pride" . + . + "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins." . + "T06648" . +_:N7ceeb713ba45458487ed25c7730e032e "nextdb" . +_:N60e7207a03ef4af2bd6742dc3613229a . +_:N7a6be50c636d45de8afff291b21a46fd . +_:N32c6d012614e450e932e5c056ade85b3 . +_:Nf8a4e935a6fd4c09b498930d44642abf "OPB" . + "false"^^ . +_:N55108c393e2640b0b162c2d00f54faf7 . +_:N03d4c5f75314466f914e575bac5a0764 . +_:Ne7d9e9b1cd8a47dc8f09566b09980b3c "P2871" . +_:N39dd6587cbf444beb2f649cc0b3aada3 . +_:N224045c014a04fcbbad1dd50565f9147 . + "19-T4" . +_:N125c33fa4486418ebdbb8ec90a500168 "eggnog" . + "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank." . +_:N259d1b905fbe4583be705da629ca7c48 . + "false"^^ . +_:N9c8ab7b02afe4a02aa187774a8336580 "bigg.metabolite" . + "Ontology for Parasite LifeCycle" . + "false"^^ . +_:N439218aaec214380b719c999fd554f2b "PDB-CCD" . +_:N70eb0749dd6a4cb7b494767f9cf5052e . +_:N61883989ec534272ab702ac093b451bd . + . +_:Nfcf42d2a7bf34ceda665b4037e791fce . +_:N60e7207a03ef4af2bd6742dc3613229a "phytozome.locus" . +_:N36d875333f7e41428c638cac00f4da72 . + _:Nc23aa18cba354cd0b8e67c7b6c6c83b2 . + "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks." . +_:N5e4e76ce213f49e8a888aab55512d080 "ZFS" . +_:Nae4585bf5d8640a88dfd63c590ba70ea "CIO" . + "Open Data Commons for Traumatic Brain Injury" . +_:N979906e2029142dbab2a906081b1c9b4 . +_:N76c00db8ef44470c8db7626f50ac7469 . +_:N782cbba78b5c45a48c792de0021c06f2 . + "21393" . + _:Nd3cf6c2f04f94b15bd4d12fc6ddf55b8 . + "None" . + . +_:Ne5546b34adde42fe9b8f68c875e62705 "exac.variant" . + _:Neeb212598b644712aba55ef96e4c3480 . +_:N3aa6d3817ca445138bff42f85a4f18e7 . + _:N3ea8ad5d36ca484fb25448665c4860ba . + "Genetic Code" . + "https://identifiers.org/bdgp.est:$1" . + _:N5fe7e41a246944c7a35465ecc078744f . + "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$" . +_:N0d02b88e5feb46a6a1965f09435fc0eb . +_:N617c2e4f9c7742cbb5b2ec5911bafec8 . +_:N19d01116c0f54598a775b358304a5a85 "GMD.ANALYTE" . + "ICDC000101" . +_:Na06c2dd180014d2094d14168c95c9cde "uniprot.chain" . + "13GS" . + "false"^^ . +_:N50ce5a5b2a754c029b894e69b83db512 . + "n.lenovere@gmail.com" . +_:Nca6b27c8755e4fceb590f12deaba6617 . +_:Nfb3fb2dfd41042ca8102dfe58ae938b6 "compulyeast" . +_:N2a808f990d2248fe80b94d63c612bd9e . + "3SBPLMKKVEVR" . + "119514" . +_:N85e9749827804dc0b936fe8ca12ea7c5 . +_:Nbbc5c21da6904ce5b1359776169b3843 . + "None" . +_:Nbf9b56f0b470423f8dcf1afc9daac3cf . +_:N0ad5f03fdf8b49caae82472cdff34b9c . + "https://identifiers.org/splash:$1" . + "false"^^ . + "lynn.schriml@gmail.com" . +_:Nf58c09af51144f978859b6c12b9f9ea4 . +_:Nfe08d17af3ab4d0981da9e7da14ec4ca . +_:N93de351c5d0a433e9a3e4b963ac9f8db . + "https://identifiers.org/UBERON:$1" . + "dorloff@ncmir.ucsd.edu" . +_:Na268d3aa8c8e4dfa9ed18c3326f3996f . + "false"^^ . + "^\\d+$" . +_:N7e308e66230b4e0ca203efe9ea0697fc . +_:N8087e5df8dcf415ba0ab62206a4e49c1 . + "LCSCCPN" . +_:N7d40f3be50de4778a60ba69a5af91763 . + "^\\d+$" . + "^\\d+$" . + "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots." . + "https://identifiers.org/pirsf:$1" . + "The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. " . + "false"^^ . + "International Standard Book Number" . +_:Nce0049f736bc4eb4940186f90c3bc881 . +_:N2cb98ddb0b2649b1a8f7b2036dbe883d . +_:N973d5f75197f4e62b4151541b0530d78 . + _:Nb4a2e4f6f8d3479db2ca2b6df00cb379 . + "e999" . + _:N012e73e24e164d5091f2ef68add1076a . + "NameRXN" . + _:N0fd9b1dfdd8646aca531f064733f28ae . +_:N1bea2f090c09451188a62e4251b8af4d . + "Homologous Vertebrate Genes Database" . + "The International Standard Book Number (ISBN) is for identifying printed books." . +_:N46dcdbddcb1942f0b79061945fd06503 "ARK" . + "National Bibliography Number" . + "false"^^ . + _:Na8c6e570066946c68942cb221af2163b . + "https://identifiers.org/genpept:$1" . +_:N6d46bd4705634a3e9adc95e9eb432350 "SABIORK.EC" . + _:N0454b37affda4e038c8d06c8c1494323 . + "g.gkoutos@gmail.com" . + "https://identifiers.org/ENVO:$1" . +_:Nffde36c529054a96914c98c93db8f016 . +_:Nf15decb833154cae87f3f4d07e15aa74 "wikigenes" . + "None" . + "Gene Expression Ontology" . +_:Nfbf6ff83ae2b4119870b66ebf4a48c09 . + "^\\d+$" . +_:N57b6b7e4c1084d308230bceb2d9bad77 . +_:N8b937fee15c744ed8a92f6f7bbb44884 . +_:Ne11d4ccd13984d038985d6546688aa47 "JAX" . + "https://identifiers.org/glycopost:$1" . +_:N733a773d8fc943efa28c07e6dec2d923 . +_:N6bb9fbe883d64230b76057046bf70ed1 . + _:N90e1b6296d3b465fadaa34eb45047a38 . +_:N52fec8905ad74f48b5ffc646500ecf94 . + _:N4796522668eb4124aedaa60b2086b711 . +_:N5fadf7ddf5da4432bbbd3a7e70bbee88 . +_:Na6d240cd70984c5385127903a354ff4f . + _:N983ad9459f9a405e96dedc39afd614ab . +_:N84a01dd6e2984a7e903fd1e2eea80fc3 . + . + "Astrophysics Source Code Library" . +_:Nc2588b3f24994de783b1538e86102fee . + "European Registry of Materials" . +_:N71fae18547fc4dbb8391397f7162df90 "mo" . +_:Na8c6e570066946c68942cb221af2163b . +_:N40a5ced526b84858a611f94ac2c19fd2 . + "None" . +_:Ne9b96a1c5f7941eb8638bc5e264ca6b2 "GeneTree" . + "false"^^ . +_:Ne72300ff0a2e4097b7a78fdd194d6813 . +_:Ne13ae73a4e754aaab4d5162ebe22f2d1 . +_:N9813954146124bde8e11424bc6ede5e9 . + "Human Endogenous Retrovirus Database" . +_:N42ed030fcd494e138ee0fcefb8b43ba3 "panther.pthcmp" . +_:N39334e80cb4343119932fb162b45ff65 . +_:N587324241b8144eda5115471adecb0ec "vectorbase" . + "Orphanet Rare Disease Ontology" . + _:N2ff141dd4f1143e58a0427939ef4235e . +_:Ncfdce173db2047a6a4f6e83d56ba5e9f . + "CCDC Number" . + _:N8b373ba7ca25416f96c2e452b4980d35 . + _:Na041801c9c7a4b43b87c187f51050469 . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene." . + _:Nd7e2d455d09c4dd487ffb79ef633fafd . + "https://identifiers.org/glida.gpcr:$1" . + _:N6b8a4afb0b7341afa8934882cec3cebf . + "None" . + . + "None" . + "https://identifiers.org/ttd.drug:$1" . +_:Nc763a70f58794bdab2c0dac66d81425d . + . +_:Ndb9a523f2f974dc49dcf172fde857588 . +_:Nbed33e436062464fa66762d822a9898e . + "603903" . + "ECU03_0820i" . +_:Ne538eeff909d4f06ac7cf995b7c5f246 "HAO" . +_:Ne0414767a77d4517ae56839c9b744329 . + _:Ne89b15d47a704a3aade69182927b50c8 . + "None" . + _:Nd588fc77e94648a086ef4e5724b37f0f . + . +_:N940d146e5c4749fda1c7419cc32e8dc9 . + "None" . + "false"^^ . +_:N4418062faa734449ab3bc1270fcc5bc6 . +_:Na88e7dd51d0144fc996c0713c7e206ab . +_:N652c67cd8a8a4d81854b26eebfa8099a "fbql" . + "hsa-mir-200a" . + "false"^^ . + . + . + "false"^^ . + _:Nf84b13d2096043299b21a882561e62ba . + "https://www.ncbi.nlm.nih.gov/genbank/" . +_:Na5052cc091484ab1ad8b15db0350eae5 "kegg.glycan" . +_:N2319db45c3bb477e98e016398e3d25d6 . +_:Na8c6e570066946c68942cb221af2163b "SO" . +_:Ncf36da17a8df457fb7b67b1004112d67 . + . +_:N0e19a352a4374baebb493df47f56750a "neXtProt" . + _:Nd528415861074290861426500f875290 . + "https://www.gwascentral.org/studies" . + "None" . + "Vitis ontology" . + "^\\w+(\\.\\d+)?" . + "GlycoEpitope" . +_:Na9ca0e1443994d01a34c49549183d3cd "TTO" . +_:Ne3e681233b06478c9387b472084661dc . + "false"^^ . +_:Nfbe6d559c85f45e7b590f21defea7db5 "P1579" . +_:N8945ee0289b54c40bee015e0c1854eb2 "MFOMD" . +_:N363562ae495c440695526cc2d8d5d78d . +_:Nff2b975dad774c0c9c2ec8441d38dfe2 . +_:Nc045372c7ac5482bb3d7279202d25a74 . + _:Nfbf0048075cc4d42bfe5a3872abd5bfe . +_:N8945ee0289b54c40bee015e0c1854eb2 . +_:N53a5148bf47047ad8c626efbc85e7212 . + _:N00037643accd467a8559313fb4807674 . +_:Nc1e85fe48d6e4c9696eec3317dbff513 . +_:N5cae092f195a4680a6f30fbb020aac4e . + _:N3aa6d3817ca445138bff42f85a4f18e7 . +_:Nba92a07344c4470292fff1ddf67fbe8e . + _:Nb5c540e60db44f41a001bb2305bc3968 . + "https://bioportal.bioontology.org/" . + _:Ne797098ef77246fba87a7c8c90621126 . +_:N94eb63e92a3e490bbdc1b5fc1ab5bc9d . + _:N73c8fefa6592460382a50a9d3ed2fb72 . +_:Ncbc378964c284b64b04379b7d2a4f250 . + _:Nd4529167aa644b3eb719224627c2b82a . +_:N4875c9bb414d4e0fa0dbf590a9fd7d6d "clyh" . +_:N5a12aa340d384cd88953bbf378555d1b . + _:N25dfcabf43cf4d898a84416f0a697e30 . +_:N66aef776d24640c28d93ca52d10b326b "BRENDA" . + "K00001" . +_:Ne13ae73a4e754aaab4d5162ebe22f2d1 "OMRSE" . + "CHEBI" . +_:Nd7e7405d791c45908c3a9d354fa3f281 "TEDDY" . + _:Nec45299bc1e54f3c8bf8982ee5c7d22e . + "[A-Za-z0-9]+$" . + "DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature." . + "Image Data Resource" . + "helpdesk@cropontology-curationtool.org" . + "CNBG_0001" . +_:Nec390dd0f7eb40d28bdcd879c4658668 "go" . + _:N6fcadfb2fc5d4ae99bdc033a0d4450b8 . + "CH_001923" . + _:N7ea9597be16240a993aa8f6d364447b5 . + _:N39833ee89bd347a6aeba7353b4dfcd77 . + _:N40532a85852e498bb5efa9397f28ef11 . +_:N66178f6697bc4a1bbfd8712ff0af0688 . +_:N6bf5ba0eed83426683d8d888d3aea6f0 "IDEAL" . +_:Nd9f28dc9542d407c931e6459f926e797 "BGEE.GENE" . +_:N227633bce6834a9a8ed09b3f5382d44e . +_:N9f6ab38300fa4dd5863dced510bfeb58 . +_:Nddbe40c14fd446c892222b256b232a4f . +_:N37b65e688c914774b047e5901ec4804c . +_:N4e33bec2935245e49ba76a0f40376907 . +_:N4db803738d0e4581a73829b37558ce0a "hgnc" . + "National Library of Medicine (NLM) Catalog" . +_:Nc7ead78f26c54aba974a4648e071de30 "KEGG.ENZYME" . + "https://www.ebi.ac.uk/ols/ontologies/oae/terms?iri=http://purl.obolibrary.org/obo/OAE_$1" . +_:N72602d13bbfe4e09bbadfc4696541050 "neurolex" . +_:N313b29bdb32b4b9bbeaeec66cb90157a . +_:N5a1ca115ce0347669030c5f631f04de3 "genecards" . +_:Nfdef520f28ca4baca722eb3c5b8da1f3 . +_:N4edc50277cd94e37b82f32d79958c6cf . + "None" . +_:Na52b277bee7b441e8e70b55d1f12cf58 "SEPIO" . + "None" . + "Cell Image Library" . + _:Nc228b05e90ea491c921b7af964f47358 . +_:N487d8b81347940b8a6b4cfdd917cdb52 . + _:N9298512f00bc4ae98d4eb2a4773b1b6e . + "AAA35559" . +_:N8d7b1bcc65e043f789056fc6938c62d0 . + _:Ndd7810b6d6874c8caea6bc9ffc98dd06 . + _:N68022e2b731d407e91d3ed7aced722b0 . + "splash10-0zq2000000-77302b0326a418630a84" . +_:Nf820109c6cef4fb0b1d2a628865a317a "protclustdb" . +_:N8bb84703445a43d2b6649de47ddfde05 . +_:Nbc332be6c7764982b2ad92def6dcf2d8 . +_:N1e09e6945d314255869faa1e59ea950e "idoo" . +_:N203d16e663434909a42ceb8c8ab9ae49 "door" . + "None" . + "false"^^ . + _:Neaa407c4ccdb4addbfe7516c147b3a79 . + "^AASequence:\\d{10}$" . +_:N8024341cdc1f4df485803716766f6083 . + _:Na2412d83215f4fe69e57d5f0f2834786 . +_:N367f476fb54d4eefbd41285bab9e9b7e "OMP" . +_:N725967693a2547549370205befcd2dc5 . + _:N76f029a55cdb447891ac2e4b710d2c55 . +_:N67314cc7f32543e3bb67b4f2809fdf33 . + "Core Ontology for Biology and Biomedicine" . +_:N96df64d8a6cd4c71ba7aa5eefee82fe1 . +_:N12ef5f510cd44885b31b5fa46b533fa7 . +_:N73df4db795244208909f2a3424000513 . + "Comparative Data Analysis Ontology" . + "false"^^ . + "0000171" . +_:N89de7f8c9aa442f5badd1c3a8394493e . + _:N4ba31b4e506c4ec08c83661360f4c44a . + "false"^^ . + "D00001" . + "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information." . +_:N11373f57eb4940f9b4c60d20edec0b14 . +_:N90ae0a0b9295419987325b82d7a0f302 "ABS" . + "https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview" . +_:N9978b74ef2014287b10d6d56994f25f7 "zfa" . +_:N2a4d705f23374ec2bfde74cd426e8090 . +_:N5805a07526644a559ae7587ff6827d5a . + "https://identifiers.org/hpm.protein:$1" . + "https://identifiers.org/bioproject:$1" . + . + "S-EPMC6266652" . +_:N388bcdc34fb940bbbb5c64eba3eb2b44 . + . + . + "balhoff@renci.org" . +_:N6529be3816e4499a9858cb359e552b11 . + "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR)." . +_:Nd12199b9366e46b292d36bab16c76f1d "sgd" . + _:N867c315f547149a18b8e3768d1b6b2d5 . +_:Nae18cad1239c455cbfb166cd0baad183 . + "https://identifiers.org/pmdb:$1" . + "https://identifiers.org/PATO:$1" . +_:N152c31a785de4d839239b878070dc168 . +_:N839f5b9f6e4d451eaf1ef9dafed7bfc0 "biosimulators" . +_:N05140ee6e3184478a134ca3148422fcc . +_:N8defb2b4eda940dcac186a308c631b4a . + "1a24" . +_:N83f3d38ae5014773aaa4d17d59a54239 "gexo" . +_:N3afdacbcad414f0ba516d1957b9bda68 . + _:N994b14bff6c74c34993af78f7329bf1c . + _:N6f29b2fe8af5477fba9a3fc73b5324a4 . +_:Na626d5741925463084496898ea55ecb9 . +_:N6eabb81ff742437bb362085121372aac . +_:N8d4489bbaecf44e89b621da29818f095 . + _:N23145fa936ca425fb244256f342c3138 . +_:Nad15d1beb13a46f18bac2ce7bb58876c . +_:N582d53175ad84e0590996817c1c610ad . + "Biological Magnetic Resonance Data Bank" . + "Enzyme Nomenclature" . + "None" . +_:Nf8832a4e981c402db43b2df254068d2c . + _:Na981c06ee6cf4fdb8fce35bec170eb2a . + "http://purl.obolibrary.org/obo/go.obo" . +_:N0577be01af344496ac33bfd4f91da99b "MASSIVE" . + "Chemical Methods Ontology" . +_:N59c2caec69b947628900e847a437ef3f . +_:N76d7fff21f574c7695358d308cf3b5ec "CVDO" . + _:N060850a5f0a74d10a9fc93bbc13267c6 . +_:N47ab278a23ef4431bbc212d37b2cffb4 . + . + "^(T0\\d+|\\w{3,5})$" . + "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1" . +_:Ndd8265a488dd4993a5a32f66b8ee6445 . +_:N2d6f11e8c8674dc38e77b759b4c348ed . + . +_:N83f3d38ae5014773aaa4d17d59a54239 . +_:N28eb7697f1be4062b3b5adbeb58268c0 . +_:Na2fa668ec9a945c7a262c1d31a8eca89 . + "false"^^ . +_:N35e231fc3ea34a2eb9d106c3cd2d356b "IAO" . +_:N72998157bae248c49f7e49b0f92af384 . +_:N863ee136207f491bb0e5e7dd54e09fac . +_:Nebbf4cdff6dc44eb8a530ad6266987b5 "SWISS-MODEL" . +_:N8a7ad7b64a4b44ae933687b24f724c4f . +_:Nd81a4dc4e732489f9ffc3d0554cc67de . +_:N45c330cc1d1248c0aa1185e22abc8b14 . +_:N3a032929c1df4e47a3d4989bd6f7e028 "dbest" . + "OTTHUMG00000169812" . + "https://identifiers.org/vfdb.genus:$1" . + "https://github.com/NCI-Thesaurus/thesaurus-obo-edition" . + "Dublin Core Metadata Vocabulary" . + . + "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information." . + "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins." . +_:Nd1a86837bf2d4d16b7665d9033e150d3 . +_:N9e2a778e8f70486b93b5f9f11305697a "BACMAP.MAP" . + "MCDS_L_0000000001" . +_:N7ae65433d3344bd78cc8552ad1faafa5 . + "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions." . +_:N782cbba78b5c45a48c792de0021c06f2 "DrugCentral" . +_:Nfd0ec11e5a53471394f5f6c155b20971 . + "None" . + "https://identifiers.org/occ:$1" . + "http://www.genedb.org/gene/" . +_:N44b6ee31bf1d4313a6c0cc9e19a59aa7 . +_:Ne141d76c648e4e42813d0349137f62d4 "swh" . +_:N3106f42356b44121a5a49b3fc9ee6124 . + "^[A-Z]+[0-9]+(\\.\\d+)?$" . + "https://www.ebi.ac.uk/ols/ontologies/orth/terms?iri=http://purl.obolibrary.org/obo/ORTH_$1" . +_:N5755deeb9e2f4df999c7a65ae340d162 . + _:N8a171690f82e4ac9ba3835d975fe6783 . + _:Nc91fdb6f9d724a3ca5a00a10c35d5d1c . + _:N52d82bf701a046d29c5dbd5f511e5e52 . + . + _:Na24c4e905acc4a7d82d3d2e6815c4f56 . +_:Nedc4036818664f18bc3e236d1e114882 . +_:N119a4ece4cdc48419a0428ae173bc349 . + "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences." . + . +_:Nd69cf98f94c541c7aacd97bde43110af . +_:Nbe72e183e00048b3a84f8ec8ca797ac3 "CVDO" . + _:Ne4cf3ff7560a4ae29a11d34fe140a105 . + _:N7149d6baa1a24acabe738e51f25fb8b4 . +_:N8ee046eac27f4351a55c0783337f06c9 . + "http://www.pathbase.net" . +_:N239890447b5949498bee92396c4169b2 . + "^\\w.+$" . + "https://github.com/OMIABIS/omiabis-dev" . + "None" . + _:Ndec2a71fc31d4e779b53479352e7b943 . + _:N659bd0ba929348f781fd662863058a2f . + _:N7a62370addc946f29138fffdc3b4a519 . + _:Nc038c5433d954efc823f3fe368ad70c4 . +_:N48f25eaed1ec4987a5f7b06d41bc115c . + _:Nfd84f716ff75480fbeccd6904764af53 . + "false"^^ . + _:Ne302b25c29664de382a7a2cb64c99d21 . +_:Nc0ab54e7c8834494a4ad91e220ac2595 "CORUM" . + _:N49f2ebc6b927488b99f758efa9b71187 . + _:N4326544dcfe04c94b14b5b5399b843fb . +_:N6fa8ba1e749341ffa56ed021fd22f243 . + "https://identifiers.org/ricenetdb.protein:$1" . + . + _:N656e1ff5fb60431e94f638a80bae6a27 . + _:Nd09bce1b99064c489237ba0ae1e539c1 . + "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes." . + "https://www.ebi.ac.uk/ols/ontologies/afo/terms?iri=http://purl.obolibrary.org/obo/AFO_$1" . +_:N916c948b49754a83b4e10fbdf97f5d34 "RGD" . + _:N22ba4ed15345422ca502294a5c09b563 . + _:Ne998f0e823ed4f81a98b7b55dc6e8b49 . +_:N8382398e586c45068136eb545b6c2b34 . +_:N7bbc79ef2d2b46109b5c6c8823c6da15 . + "NCBI Protein" . +_:Nbc44e2bba07242e6b444d31aafe98d0f . + _:N23d46f733fb44683bbada310dc68e00e . + "https://identifiers.org/amoebadb:$1" . + "0000590" . +_:N7ab0d869c6ef41179deeb74760deac4d . + "NPC139585" . + "None" . +_:N0db4a45cf66e454084a841ef77f1a0d1 . + "^rs\\d+$" . + "00007294" . +_:Na457c72ce7e947c881cdf1011eacd558 "WormBase" . +_:N155a863599c34521a4450f6660013f70 "BGEE.STAGE" . +_:N91ace8334a294aa398c2a713e21fa948 "metanetx.chemical" . + "https://identifiers.org/hgnc:$1" . +_:N39f1fabf4ec74f9880c43e30e6a18312 . + "None" . + _:N0cb2bb2e5d0e4758a1d33707d39365bc . + _:N87d8cd5b2b16465f92a94236db1ded96 . + _:Nf3b9c457bfdf41e49c7b404dc10a76bf . + _:N57997db450d3466ea9fc812bf2e7dff6 . +_:N4f21a1c7504c41608aa0cb2b8b8c6c51 . +_:N3d954942b7bc450cacba12d1878179f5 "glycopost" . + _:Nd12199b9366e46b292d36bab16c76f1d . +_:N9512305efe7d4ac1afadf57416daea35 "uberon" . +_:Nbc12c52a0c2049a3aae769723e67f0ee "coriell" . +_:N76d7fff21f574c7695358d308cf3b5ec . + "false"^^ . + "Tool and data services registry." . +_:N9b0fc0e0f56c4faba3d6c4ab3868b5f8 "MGI" . + _:N7756fcb851e44df0a4be984b92490058 . + "Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models" . + "000048885" . +_:N492d8b595fb24237a04bce5fcaa28c93 . +_:Nbed33e436062464fa66762d822a9898e "PORO" . + "false"^^ . +_:N915213286aaf45949781fcfba0afc819 . +_:Nd8b87e83734b406b803d7cb5fa63e109 . + "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends)." . +_:Nd57d9e94855c48f38878f354bf4ea971 . + _:Nea36752324984e5abac9e503c0126c32 . +_:Nb12963e0cbdd47609605f78f49a760e5 . + _:N03f4ae15c09947f195d95176974d2004 . + "Sorghum ontology" . +_:N8e626bc42bbb40ce8aadc2472162692a . +_:N54243b25354245e281eaead2fce313c9 . + "https://github.com/aszool/oarcs" . +_:Nb9b3a9f8128c403a85568bbe3a23dbcd . + _:Nc62d38b9a24a4862acdd61927b996ae0 . + _:N2b39ae2a5bc84a4ebd12d56b5a376cff . +_:N240524b466d0432682478d146f4cf663 "abs" . + _:Nda64ad3fa41049ea883e5b2db5cb4559 . +_:Nf63e43b34ec341df9aa4bc8e3d3e6f03 "genedb" . + . + "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder." . + _:Nda9d3100808f44149d2f15f6e38aecd6 . +_:N41ad9a268bd1433081c334540ee0fa78 "UPA" . + . +_:N0deb866b165e4d9aa67ed845f5dd4d2b "HAMAP" . + _:N63faf99915f64df9a937ed7fcafcc668 . + "Search Tool for Interactions of Chemicals" . + _:N0eb55ec4396448b3b6334e76e6f0b1af . +_:N771e1433af004242ba317966eb61c1a6 . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/ehdaa2/terms?iri=http://purl.obolibrary.org/obo/EHDAA2_$1" . + _:Na47ca26d16064fa0b17050d68f86ff91 . + "Identifiers.org Ontology" . +_:N52d106caa6ef47b192e1dc1937bdaa6d "mim" . + _:Na081a87d2f5c40788ce5b0481872753e . +_:N86a33aab224f4bfc8428c1107a64bdb7 "AGRO" . + _:N51ea3473b94b411d955a9f4230391544 . +_:Nbe72e183e00048b3a84f8ec8ca797ac3 . +_:N67bfcf5981784b3e9abbae52e713a3fa "px" . +_:N57a7d67e4a9b425b9b8cd7319931c020 "OTL" . + "Integrative and Conjugative Element Ontology" . + "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information." . +_:N23e1d8616fd5403b98b89a0561232296 . +_:Na0bdfa4a175f44fa9e1fb8952f242f54 . +_:Na9816ba4366a48e8995d323fdcb74b0d "soybase" . +_:N83f469a2c47d43ddb5e1534bf7eadef5 . +_:N2e739d579ff54254a1d6400afdb19709 . +_:N66f493e467bf4c589bf70c3a132be9ca "miriam.collection" . + _:Nd211a06b19f045d0a8d2c74e82658cca . + _:Nf79f194efe014147b71f608bce06f7fe . +_:N5978367cb310406abea9498cae847d80 . + _:N42d9ca43b05846e7911a66cb21d20a84 . +_:N781c309c800d4614901fe6da57296fca . + _:Nf4bf294da0824f849f6ad26e82e04678 . + "BRENDA tissue / enzyme source" . + "BiGG Reaction" . +_:N6b7ba2bce3f14e7fa5ac785468c29b2d "gold.meta" . +_:N5d6c16ea970344718a391d7540ba7317 "VMHMETABOLITE" . + "Software Package Data Exchange License" . +_:Nd1327da44d344b6eaf5843d649f19e39 . +_:Na7715ab86bd5424a80ee6677a2e4b2ba . +_:N062fcc6442d34416834508977b8fcda4 . +_:Ne3393f00567040acabe21b35f95da854 "pr" . + _:N8d552fe43519487494f546c67a976418 . + _:N33fbbbe0f46f4da6a1faaf6899664711 . +_:N8e1f709e0ba4473b946a8834df4ee385 "chembl.target" . + "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information." . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBBI_$1" . +_:Nc7ead78f26c54aba974a4648e071de30 . + "None" . + . + "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis." . + "Barcode of Life database" . +_:N5f64cd63168b49c095767acbd3d5b6e2 "iceberg.element" . +_:N6f4f949a62694a73b983a073fdd5f2c5 . +_:N8ff8bc55f7234ef98c6378a56f07fcce "DIP" . + "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies." . + _:N5be3c89f13174c2fab5ceba9277531ce . +_:N07a2c9ded8a9468183f520a5134f3675 . + "https://github.com/rsc-ontologies/rxno" . +_:Ncaad05c21c4e434ebbdba254400e7dd9 . +_:N814485126d4f410f907d8e974e178b98 . + _:N855bcb5ba5e441a6b0f12f515aa84521 . + _:N61b9c512df0e4ce2834aab1152016871 . + "https://github.com/monarch-initiative/MAxO" . +_:N28218847d0304685a9c506c6d668b009 "aftol.taxonomy" . + "false"^^ . +_:N665f7872300c48058c17b4f561f1d23e . + "An ontology of human and animal behaviours and behavioural phenotypes" . + "NIST Chemistry WebBook" . +_:N0948ee83ec8a47c7af2463ec95e94fed . +_:N285691ac1ef84fc68c4e12b89e22fa35 . +_:Ndcce57d2d272434a97ac4f17160965bd "PID.PATHWAY" . +_:Nf58b7ecd91f144f0ac534ed175191d80 . + "C05G5/12462-12364" . +_:N85e9749827804dc0b936fe8ca12ea7c5 . +_:N287182f606e54b50abb164de685bbb25 . + . + "https://www.chemspider.com/" . +_:Nfe08d17af3ab4d0981da9e7da14ec4ca . +_:Na88e7dd51d0144fc996c0713c7e206ab "WB-LS" . + "https://identifiers.org/pmc:$1" . +_:Nf5360dbc35964ab4ba51357f7c4075f8 . + _:N3586e4eea34149a2b6ee6b921f2014c6 . + "https://foodb.ca/" . + _:Nbd53ca73eb664abf8da830c589cb156a . + . +_:Ne807677e0e1442e9a4550666596f8509 . + . + _:N50ce5a5b2a754c029b894e69b83db512 . + _:Nb0971deb12004cd8b78480ddf7fd91b6 . +_:N8d3e7b76c5364aa095d4169d98051503 . + _:N32a75dabcf7d48699fef1e73146cb010 . + "http://current.geneontology.org/metadata/gorefs/index.html" . + "https://identifiers.org/geo:$1" . +_:N02b71cd77b754dc2a88ecb8d37bc776f "UniProtKB-SubCell" . + _:N5d5b5652f2234437bf8cedfd310b4c51 . +_:N35e231fc3ea34a2eb9d106c3cd2d356b . +_:N7c53635044124c04ac1d3482c1b9584d . +_:N3b557a620bfb4681b8038a34ee623eae . + "false"^^ . + . +_:N70338455269d44b1beea469adfefa964 . + "cp390@cam.ac.uk" . + "^SLM:\\d+$" . +_:Na68349ad9534492dae26bbb7b4093832 . +_:N5bb4aa9d0dc64309a43ed7eaa3d7b260 . + "https://identifiers.org/biocatalogue.service:$1" . + "rs121909098" . +_:N55574a62bcaf4dc19cdf503f5c4010d4 . + _:N4f23d4eb1f7d44e9905785c028de617c . +_:Nd1bd265d11be4daeb98adf2207550327 . +_:N012e73e24e164d5091f2ef68add1076a "BSPO" . + "Protein Model Database" . + "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders." . +_:Nc3da6d65562e42ac9baeac0e84ea1827 . +_:Nd5f86ae572d444a0aa5420fb0ce16f38 "MASSBANK" . + _:Nd5e592c5822f49638166d467ab8e701c . + "false"^^ . +_:Ndf7e26d289e041c2abb04859975bee27 "img.gene" . +_:Nfa701f51200f40dca72e6f6f8d34bd4f . +_:Nd5e592c5822f49638166d467ab8e701c "BILA" . +_:Nc4e889fd9b194ef5b351ca059d853632 . +_:N25dfcabf43cf4d898a84416f0a697e30 . + _:Nbb1e92a438e549d2850dee2b56fa82d6 . +_:N6bb9fbe883d64230b76057046bf70ed1 . + "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms." . +_:Nb1af4bb46654468393bb703e5f2bc063 . +_:N8bb4b517eff642769334931eedc89a0d . + _:N55efb6909c634de3a7947cca14960121 . + "Gene Ontology Database references" . + "https://github.com/AnimalGenome/vertebrate-trait-ontology" . +_:N32cd267605f44a18848372d5fddec167 "P2892" . + "0807.4956v1" . + "None" . + "^P\\w+$" . + _:N00cd62fc213a4666ab6cd39529c5fd5f . + "https://identifiers.org/dashr.expression:$1" . + _:Ncfbfbf7adf6d467d93362b83f2f7d8d6 . + . + _:Ne26dec5ea2d04a29be75e76e1894782c . + "http://msi-ontology.sourceforge.net/" . +_:N0e9781630dd54101825eef9c65c08679 . +_:N7158587263b9475f860a87210ce77426 . +_:N39334e80cb4343119932fb162b45ff65 . + _:Ncd7171f406934084af3afd5c32fe2410 . +_:N3eda0f9c1acb4d59814e8b5b833e0dd0 . +_:Ncfda8f9bb4ea47278c38053aaea79b92 . +_:N0da1863a61c048ebb487fea4a5bd3e7c . +_:Nf755d864e0be4bd89147233a7844ff38 "MESH" . + "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST)." . +_:Nd8b87e83734b406b803d7cb5fa63e109 . + . + _:N345e94af83c24b8cb0f14a418927da5c . + "Ontology about the gross anatomy of the C. elegans" . + _:N03f07bb7a04f4961bfef860dc32eb081 . + "https://identifiers.org/wikipathways:$1" . + "robert.thacker@stonybrook.edu" . + "false"^^ . + _:Na591b75df5354042a42de6d8ef86618d . + "^HGVPM\\d+$" . + _:N4feb3d3c57e54db182fac3d8c17a93a6 . + "^\\d{7}$" . + "Cell Ontology" . +_:N1f8c85e279244e9ebec8471c6f06da5a "fobi" . +_:Nda0aa2eba30b470daf45a0b0446c4a5d . +_:Nbc68e66bc28e4fa2b3152cdfa2182137 "BCO" . +_:N8fb833c26a964905a9354d6d708ebb99 . +_:N52d106caa6ef47b192e1dc1937bdaa6d . +_:N8495fc8b8bf64845bbdef28e68abae40 . +_:N2e062a7e9b1742b1881527d05d3e404f . +_:N794a3035514a46ffb8b213a1714fbbc2 . + "P12345" . + "UniPathway Reaction" . + _:N2bff70e3c5894552b5ab5384c6285eb7 . +_:Nb9eb74e0dfe44c47864d6566e6a7f30f . +_:Nf3b9c457bfdf41e49c7b404dc10a76bf "CTENO" . +_:N34b639061bf543eaa12f958ac31d5c21 . +_:N58a41cc007c0482b9b2f6aa5f9ed9a16 "lgic" . +_:N4bc88d1ca1dc49dbada17959b03f2aea . +_:N2c7fd03289e540e9a540be779561671c . + "false"^^ . + "false"^^ . + . + _:Nc5ca5e38a35246aeac57025ad363afe4 . + "^\\d{7}$" . + _:N418d2b792918482ba91b8b79b5fc8a87 . +_:N40532a85852e498bb5efa9397f28ef11 "CRO" . + . + "NCBI PubChem database of chemical substances" . +_:Nc02f37ddef8c4bc8950257f460d0aa6c "myco.tuber" . +_:N4697d31a1fa04f13bd8fe8c751fbe8ef . + _:N40473e7a2d724b43843b62a40ad1be9f . + "georgeta.bordea@u-bordeaux.fr" . + _:N0c92afc350924ea1b2f2434d1ab40971 . +_:N7ae193095b0d43f9bafd5472ee83a999 . +_:Na3789ffd6a9d498a85a282ce00dc2f8e "napdi" . +_:N48ca195bbdcd4015979f43e949089b42 . + "^CAL\\d{7}$" . +_:N4d90418d6b7641bc9ca5d0d398602f24 "EFO" . +_:N5d27c91cd94a49ad86cd580600ee90bd . + "https://www.vectorbase.org/ontology-browser" . +_:Nb60d22eb00c047f1ad92598d37965608 "lipidbank" . + . + _:Na6af9bea5d1f4518b572a5055347769b . + "None" . + "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms." . +_:Nd588fc77e94648a086ef4e5724b37f0f "bigg.metabolite" . + _:N44637c91b29845e2884b97712eefbd70 . +_:Nbf7d970252ac43428b1aa7bd3086eb92 . + "false"^^ . +_:N74262afb39af447b9110268f32216abd "SNOMEDCT" . + "None" . + "Experimental condition ontology" . + "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction \u2014 as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities." . + _:N3798789ca4be472698f5066bf5666666 . + "190000021540" . +_:Nda9d3100808f44149d2f15f6e38aecd6 "COB" . + . +_:Nb82b01fb16bb46749b8023e2cb55a3f7 . +_:N9148dbf2d6fd4b1bb547161cbb512206 . + "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products." . +_:N964777c09c55406392372aaa9f69beb6 "REXO" . +_:Nb6ae6432829d43e3ab0ce427bc8e5f9e . + "https://identifiers.org/oryzabase.gene:$1" . + . +_:N17f98bd652e340eebc27d3044aeb34cd "GENEPIO" . +_:N66178f6697bc4a1bbfd8712ff0af0688 . + _:N6278c313b2e6425f82ffd6df7fe725cb . + "Woody Plant Ontology ontology" . +_:N7830bf9fde194237a9d1c4f0c627fc12 . + _:Ne892a26719464c42ae5603185440195a . +_:N72d26e6ab5be4050905fe2cc8c06e961 "biosample" . +_:N73c8fefa6592460382a50a9d3ed2fb72 . + _:N7d40f3be50de4778a60ba69a5af91763 . + _:N367f476fb54d4eefbd41285bab9e9b7e . +_:N2d1348fb25ba4fef86c0633ddf2871ed . +_:Ne45351f7025c43afad1c92133ddcd5fb "DRAGONDB.LOCUS" . +_:Nc2b000ad60f74e9395a167708ec91bdb "MEX" . + . +_:Nc677b50359f64594b3bd2315ed713a95 "cosmic" . + . +_:Nf48675db795d424384ba79101ba396dc . + _:Nfdef520f28ca4baca722eb3c5b8da1f3 . +_:Nd7fd07de534b45e9992745b5e852ecf6 . +_:N52fa8c08e69140bcb3dfe4ff04213e24 . +_:N0dce48583ed640b8a0d4f37edf3b2134 . + "None" . +_:N3991fb870fba4ddabecb19a86b2b366a . +_:N627860dba0144373830ebaaa57264fce . + _:N12d0c5071f6348bda4c794c315a90c68 . +_:N25b95c19c3574f67bd0f186bcc133784 . + "https://identifiers.org/irefweb:$1" . +_:N2e67d130099e43aa8df726f1adcbfa9d . +_:N1ceb52c768bc457e94ecbf83be96ab4c . +_:N44072a7f5e594d91890a4047658ee905 . + _:N889f340812924d4b9fc7651c93ab348c . + _:N3b1f353c3e03402aa0ac8cb4c96dc153 . +_:N9f1e6406c06041b9a7a9a55aa90ce055 . + "https://identifiers.org/opb:$1" . +_:Nfef5796faf964fecb01d5059838f3ff4 . + "MeSH 2013" . + "https://github.com/OGMS/ogms" . + "An ontology to capture confidence information about annotations." . + . +_:N03f4ae15c09947f195d95176974d2004 . +_:N7915c3b0cc3c4c79a2d079a8b98d0ffc . +_:Nb8035047343b406d8610abc4f03a4625 "NMR" . + _:Naf7963ae0084401283c4e462a9ae6a35 . + "None" . +_:N224ef3290e2246baa4ea6d1e88c3c8d1 . + "https://identifiers.org/bigg.metabolite:$1" . + "^PTHR\\d{5}(\\:SF\\d{1,3})?$" . +_:N27a273ff07a043ceb16bd6689b62959d . + _:N4b07372ff29c4def89704d7412f6dc5f . +_:N9451b951de064ae7958814d4125f9cb9 . + _:N94421bdef26f4ad18f93c9df9e2e70e2 . + "MycoBrowser leprae" . +_:Nbfc76ce25aba430c80140ddfbad50d96 . + "false"^^ . +_:N333a076b604c4ab482ac3ae9685a2504 "pdb.ligand" . + "^DP\\d{5}$" . +_:Ne226a73011ea4994b717b628edf842ac . + _:N32ba8a305ccc45caa246192a7be83bf8 . + . +_:N81ce6a32173749dcbe8191f8a243160e "cst" . +_:N9ec7a4d689a1478ba09792e2cf35cc77 . + "false"^^ . + "https://github.com/information-artifact-ontology/ontology-metadata" . + . +_:Ne83ac43832174917903a4d9e9f020d04 . +_:N04132de35eca4c01b154eecad7e92f2c . + "https://identifiers.org/genetree:$1" . + "helpdesk@cropontology-curationtool.org" . +_:N01ec2b9ef4b1437eb3dcf29fa25beb81 "EXAC.VARIANT" . + "false"^^ . + _:Ne145950fa2aa45b38647a9ef2f2adbe5 . +_:N124cf31cf4a44d6b93af688ed2884c4f "CHARPROT" . + "None" . +_:Na626d5741925463084496898ea55ecb9 . + "false"^^ . +_:Nd7fd07de534b45e9992745b5e852ecf6 "SDBS" . +_:Nad15d1beb13a46f18bac2ce7bb58876c . +_:Nd2d971c8139444d7a1360ff104c8bfe8 "MI" . +_:Nd6c0193ccadf4addbe15603e1f4b0eb9 "DBGAP" . +_:N955c4146e43947e587de3430290a3707 . + _:Nd37d7bca37ca4048a7a659d734bb3a12 . +_:N9f42df6e04df4b2bb40de916c01dda78 . + "false"^^ . +_:Ne4c692d9f7de404dbf4a96a63b97e13a . +_:N87d8cd5b2b16465f92a94236db1ded96 "RICEGAP" . + _:Ncee57d3136ae42a4b2870b660297a66b . + _:N596601e463194c57953e201b1acca057 . +_:Na5cad4e125ff4778b355bb3ea14b2121 . + "humIGHV025" . + "AU124" . + "https://identifiers.org/pmap.cutdb:$1" . + "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures." . + . + "Q-2958" . + "0000598" . +_:N31a558f1d8ea44d28dd9028c992b5335 . + "Nonribosomal Peptides Database" . +_:Ne856f73d66c542d0ad471c18c1468052 . + _:N122d02017f7445c5aa11794d28996ec0 . + _:N0f077154ab6545a5bda6324d65bd3928 . +_:N5be3c89f13174c2fab5ceba9277531ce . +_:N00037643accd467a8559313fb4807674 "P8691" . +_:N5c869dd7d037412fb27fea8a6514db92 "MFO" . + "false"^^ . + . + "None" . + "^\\d{7}$" . +_:N06a00c8ad2e540068b53550e71b9e475 . + "FBgn0000015" . +_:Ne0c896ec02d74d0a890f6e1583856eef "CGD" . +_:N91e9abecde844dd4a30e92080451677d "P3DB.PROTEIN" . + "^GO_REF:\\d{7}$" . + _:Ndacdbc34578e4416a9450ef060c5c81d . + _:N4c1498c4bdf04805be8ea6d509a52570 . +_:Ne0d3aa9422f442c7aea1876b0b69c3dc . + "The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion." . + "https://dublincore.org/specifications/dublin-core/dcmi-terms/#$1" . +_:Nac7be0bbeae947dabe2b4f837ec485f9 "VMC" . + "December 2019" . + "https://identifiers.org/rouge:$1" . +_:N66ce51d864b8498882ed8ef83e79f61a "glytoucan" . +_:N407790e5df3948d08fbcc558c5f2fa69 . + "false"^^ . + "https://identifiers.org/chickenqtldb:$1" . + _:N1c9e5ce2fbd941378a0611e3d8a79286 . + _:Nc11a35c85ea64cc8b27e282d6d0689fc . +_:N4e903f09b7024269a8cd84610be7e8f2 "tgd" . + "Brachiaria (forages) ontology TD v5 - Version Oct 2016" . + "^[A-Z\\-]+$" . +_:Nae18cad1239c455cbfb166cd0baad183 "WB" . +_:N19a7cb2639b24536bdae5f4756c534cb "co_346" . + "lynn.schriml@gmail.com" . +_:N0814801545304cfcaef94d6613788a33 . +_:N92372427453e4fa1be60121054a5a95d "UniParc" . +_:N7a1b545836704a7c9936c72bf3357aff . + "https://identifiers.org/lei:$1" . + "TreeBASE" . + _:Nd77fadeb3a46420fab9b68558de20ed7 . +_:N5d27c91cd94a49ad86cd580600ee90bd . +_:N146756b2d93e48b3abb5bdbf9d01a4d1 . +_:Nf50fbd8255724c19b09939923f406198 . + "Collembola Anatomy Ontology" . +_:Nd69cf98f94c541c7aacd97bde43110af . +_:N49c1fd816a3a4899bdc150b8feac23d7 . + "0000003" . +_:Nb4af43fc406d4536b7054b13c61d0bfc . + "https://identifiers.org/omia:$1" . +_:N41720a380ea74d43b4964ee5f5f11e0a . +_:N891a4928c2714e2d9f5dcf0e8c2e9128 . + _:Nb57dca6e55fd4c9ab697c757887499a8 . + _:Nc2f0c2ce375e404b92e2068b4b28cef5 . + "None" . + "Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015" . +_:N114bf2184337497387eaab666666d33f . + _:Naddb08f01e7b4a1daed40db479bd9c94 . + "None" . + _:Nd70f3c5e24c64cb5be22ae8b9b2fd5b6 . +_:Nd770bef2f4664300952b3b5b22824b6f . + _:N9ebc03e027e14672b42f82fddca4ef43 . + "KEGG Drug" . +_:Nb07ff3e7597e401eb8c7c81e0e7fc5a1 . +_:N72ba5b8677854d10a4d65dc5de7786e4 . + _:N38a21ba401994eb5b15a986efd37caad . + "None" . + _:N1aa7ac5978fa4cd3ae8dfa32da19b0d6 . + "https://identifiers.org/wormpep:$1" . + . +_:N4d90418d6b7641bc9ca5d0d398602f24 . + _:N72fa97d11f644205abd395a5d80ba913 . +_:Nb151f50c72eb4811acd8eb0511a7ca7d . + "false"^^ . + "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data." . +_:Nbad3d765e789425690b76f563722a8f7 . +_:N85291fbc09af40949d57534ecabedeea . + "PANTHER Node" . +_:Nca1d8a25db384622ac2386b38baf9fd2 . +_:N42277e7ccacc4b499caceb344bc8b416 . + "pfey@northwestern.edu" . +_:Nc7c5ec27739c4c61b1825b44052bbf32 . + "http://purl.obolibrary.org/obo/fbcv" . +_:N41b25c417d2447c9928cf5f496553225 "molmedb" . +_:N60a2a37d481348aa9be47d1629e99c36 "ensembl.metazoa" . +_:N74c1bc675fc14bbe9d62287e6dbcac81 . + "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates." . + _:N12c109098ec7423bad745776bb38f022 . + "eNanoMapper Ontology" . +_:N7bbc79ef2d2b46109b5c6c8823c6da15 . + "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments" . +_:N05b79e32af1e414c896f4bbea20ee587 . + _:Ndeff8991108b45f3967d4b0e7bc55f5a . +_:Nbdbe321b30fd4b7b9a3b6bb44ab3bdbd . + "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature." . + "Human Proteome Map Protein" . +_:Nf5e729df716849a7b307ea7f091a6869 . +_:Ndfa05b9d1b5b414db76e746f57e4fe28 . + "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT)." . + _:Nc6276c11ac514679b43e4c5355e3e48d . + _:N16cb1a295c124965884bb43d6a5b2652 . + "bpeters@lji.org" . + _:Nab270d80455f4cb2b796264e1adbda82 . +_:N23a42054bf754da186d6c11aed04410d . + "ExAC Transcript" . +_:N193384c354a043ba998f497e5f1b3aff "unigene" . + "false"^^ . + _:N0617042c5ce44fb39d8c7ab431b7e5d9 . + "101" . +_:Nd013f8df646c4a43b80e6e2b44761e99 . +_:N81506de719a34a85b4aecccc46696ca4 "yetfasco" . + "^[0-9A-Za-z\\-.]+$" . +_:N7508b7994b404b079ea74ec87238dc42 . + "false"^^ . +_:Nbfc76ce25aba430c80140ddfbad50d96 "CRISPRDB" . + _:N46ebb7d5e4fa414d860a094fe0a7ea16 . + "U49845" . + "EcoliWiki from EcoliHub" . +_:N0d6d631e7f124914ad91d658948b1a0a . +_:N6f3ba733aa9a4f2fb8e817909050b1b9 . +_:Nc3c4ffc882a143d29c9457ae75461ed4 "INO" . +_:Ncc7ed7bcdb184cb0a3362cebf2720121 "FAIRsharing.we2r5a" . +_:N5ef92a05e8ab4dbc8fd57ebf7a108395 "ccds" . +_:N57179732e4ab4fa7b09cae451e6903a7 . + "^\\d+$" . +_:N78082c543fc34f41922a5c64f1949702 "napdi" . +_:N019afee8c3f8421c906f24d086bb4903 . + "false"^^ . +_:N1742a07adb10402b93bcf196f9b6bd1c . +_:Nfe1f64f2df5346d2a37a1079c5e32e57 . +_:N345bf0e665af44aa9d997429871df789 "SCOP" . + "Animal Genome Pig QTL" . + _:N534fba2da0324761a73c3c7d219bfd1d . + "https://identifiers.org/dailymed:$1" . +_:Nb9eb74e0dfe44c47864d6566e6a7f30f "IDOT" . +_:N5ecb22c807ed41208f9581aa375b43ee . + "Brachiaria ontology" . + "^TS-\\d{4}$" . +_:Nca5614f64e7d489fa89bbc308bd8d291 . +_:Nca4642b26142463099c57ed83f590e5b . + "Universal Protein Knowledgebase" . + "None" . +_:Nb9b3a9f8128c403a85568bbe3a23dbcd . + "Xenopus Phenotype Ontology" . + "^MSV\\d+$" . + _:N1082d91f2e1f40cb829ccabeefb46da7 . +_:Ndbcb9f6e10e74e6f94bc95fd653f33a0 . + "GO Evidence Code" . +_:N87c80fbef24f43cabf97693af87ea44d . +_:N469b76f3473447609730cca7ec847bb6 . + "None" . +_:Nb4f5f41b435142b6ad96be59c0a0d9d2 "UNITE" . + . + "^[*#+%^]?\\d{6}$" . +_:N6e06fbecbb8b45838d482313330b93bc "BFO" . +_:N120771935c0d4dc0a11212b6c100c973 "CL" . +_:Nd98b3eaa973e4bb6b5d1636c8a6fb148 . + "https://github.com/phenoscape/taxrank" . + . + "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology" . +_:N7c62834e9e86429a9e0459bba3434bd2 . + "Eurpoe PMC Preprints" . +_:N42a644e3618943479ccd4f22e014aa78 "PECO" . +_:Nef89ae405eea49f0ad776cb9097f5775 . +_:N95bfcbaa98da4a81aac735adbb676fa0 "InterPro" . +_:Nb5c540e60db44f41a001bb2305bc3968 . + . + "Leigh.Carmody@jax.org" . + "P4355" . +_:Nf8832a4e981c402db43b2df254068d2c "PMDB" . + "None" . + "SIDER Drug" . + "hoganwr@gmail.com" . +_:Nbad88d6a0d4141638320792d356cdb1f . +_:N241ee78c18b74149bc646dcced099be4 . + "^MCDS_L_[a-zA-Z0-9]{1,10}$" . +_:N4504e5cd520a46f08688bf447a0a215c "d1id" . +_:Ne6bafaab2a0045d9ab0cc28681134c58 . + "^NONHSAT\\d{6}$" . + _:N92372427453e4fa1be60121054a5a95d . +_:Na591b75df5354042a42de6d8ef86618d "ped.ensemble" . + "jiezheng@pennmedicine.upenn.edu" . + _:Nb6d27919d42143d2a3a03f4491826906 . +_:N29b21a4d2b32496f934f1d9e44817b05 "ncbiprotein" . +_:N29dc67dc40a9472c89d57743f12ce6ac . +_:N062fcc6442d34416834508977b8fcda4 . + . +_:Nde85281448ac415798bffd45a69c0231 "REBASE" . +_:N5144616c219246999503a737332f7f3f . +_:Nc74bb1a1900a477492d0713423e882f7 . +_:Nca53cafa713c44a59b7842174655baf5 . +_:N15ede96e1769489ebce60bf258f2fab3 "MIREX" . + _:N4816541db8994fc08e1bcb5bab77affb . +_:N9c205263ac8d4d5a86322852eda2d271 . + "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data." . + _:N8fb833c26a964905a9354d6d708ebb99 . +_:Nea3cf25557bb4334b39365042bc20b5c . +_:N8e6a9a8f85cd430e8099266a1c5e8301 . +_:N8730ffe23764496b94649f3643c13ca8 "CAZY" . +_:Na1c021a6fd8e483f8634a8067c86f63f . + . + _:N9164accdaef6411cbe2467dc04dc1082 . + "^TIGR\\d+$" . + "https://github.com/OpenLHS/CVDO" . + _:N7158587263b9475f860a87210ce77426 . + "cjmungall@lbl.gov" . + "false"^^ . + "CranioMaxilloFacial ontology" . +_:N9ebc03e027e14672b42f82fddca4ef43 . + "VFDB Genus" . + "false"^^ . +_:Nd4af2fb99caa4b4594e1c596990848a4 "IUPHAR.LIGAND" . +_:N80848c91c42e43a9a1a26cbe53649ec4 . +_:Na15c520ef884474094b069bedc2480c6 . +_:Ne779e778063b41949b5b14179c9a65cd "genetree" . +_:N5e4e76ce213f49e8a888aab55512d080 . + "Integrated Microbial Genomes Taxon" . +_:N622a7778f7b14162accd9c403fdb5f91 . + "None" . +_:N8c7b905f620f49cfb51c38bfce50b7eb . +_:N7c0f88826f534403a0a6875565ddf259 . +_:Ncca253885cfb4646b321ca366f542844 . +_:N8b373ba7ca25416f96c2e452b4980d35 . +_:N6a72682a5daf4c3e871131e169c6a5df . +_:N63623274a28547de88fafc4ad70595c7 . +_:N285691ac1ef84fc68c4e12b89e22fa35 . + "https://asrp.danforthcenter.org/" . + . + _:N67d2c4575be7452884a26b5fb1a343f3 . +_:Ne04a898ad9884128b8b1d4be78b17136 . +_:N0b700b0c63084c0ab59ffa6edfd8a7f4 . + _:N90ae0a0b9295419987325b82d7a0f302 . + _:N46add195817a49598aaedcaed4274071 . +_:N6277cc43fce94764bab51dfcc66d4b0d . +_:Nd770bef2f4664300952b3b5b22824b6f . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." . + "None" . +_:N85c43a1bb5664bfab6a7640a3adea608 . + "SRS086444" . +_:Nf778f2447dbb479486b852c7faf6f275 . + "http://www.disease-ontology.org" . +_:Nc214d271b9674572bb86e0e0e3c1ae1c . + "Reactome - a curated knowledgebase of biological pathways" . +_:Nf627ce1c76f04551aaee7d159344902a . +_:Nde0151d00a7d41efb4b6a3a2abb3b664 "P354" . + "Protein Data Bank in Europe" . +_:Nc0ff0974d420469186842ffc145baf87 . +_:N22428da90b604d75a6a5ee5baa4c7175 . +_:N8d3e7b76c5364aa095d4169d98051503 . + "GlycomeDB" . +_:Nb4956f7720474bedb9d9363bc8535f97 "oclc" . +_:Ne771595791214681b333406c27d7441a . + "None" . +_:N863ee136207f491bb0e5e7dd54e09fac "IDEAL" . +_:Nd6457a3350794b458ce4c557f066df19 "wgs" . +_:N044a22f95aeb417aae625ef33f90d036 "emdb" . + "https://www.psidev.info/peff" . + _:Naa62aa6818f24bd4af16b91a3de40465 . + "false"^^ . +_:N19c0df0681754690bee2276edea3e4bd "UniSTS" . + "http://rgd.mcw.edu/rgdweb/search/strains.html" . +_:N21f259c90025417d8a71792d10ee8480 . + "https://identifiers.org/rebase:$1" . + "false"^^ . +_:N06caa60605644b2481de5c77a3f142c4 . + "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List (SAEL)" . + "^\\d{5}$" . + "https://www.vectorbase.org/ontology-browser" . +_:N983068dbae6b4fecb088a17bdbc75c62 . + _:Ne288f2e229fa44aba7226f7c4adc7f60 . +_:Nbb3f13e5992a45e3b9c92fb80457ea11 . + _:N448f6a69f7a04eb69992cf61b7c2ecfe . +_:N59574c1789384e2783a79fdf274eedd1 "ZFIN" . + "https://identifiers.org/bugbase.protocol:$1" . +_:N2e38048dcccb4f1f950630a53f8a6ef6 . + "false"^^ . +_:Nc4e889fd9b194ef5b351ca059d853632 . +_:N8a93951f8c574da9a55d66f3cc0683df . + "false"^^ . + "RNA Modification Database" . + "LipidBank" . + "^ENVO:\\d{7,8}$" . + "https://www.gwascentral.org/phenotypes" . +_:N6716763b145546d2b50ba627ebee5531 . +_:N339fe6cc92524b3e8b1ab691af31c308 "orphanet" . +_:Na874cdfca1ab4ab9bb97b82ed7adc1c7 . + "None" . + "https://identifiers.org/sabiork.reaction:$1" . +_:N1762a242ae1444ed87a44fa3a9f39f2e "BITTERDB.REC" . +_:Nec013b679fb34d1689c15e57aad10d1a "bionumbers" . + _:Nef41afd929994c2995c18098fd7a9d16 . + . + "NeuroLex" . +_:N46b6acfcf7ac4cebb631d47f08b48151 . +_:N791210333a40428b88537bd93ac1afec "hmdb" . +_:Nf0a033623e904527967fa7dfe1fcb61b "PMCID" . +_:N4998dced729d45c5bb9e3a35d18da197 "intact.molecule" . + "miRBase Families" . + "Arabidopsis Information Portal" . +_:Na5b4417819bb4c7b9fe33d2e76ab9ef2 . + _:Nc8ecf845bc064929bfbc6f8ad6c91e7b . +_:Na9ca0e1443994d01a34c49549183d3cd . +_:Na3e73f719eeb4cec80fcc44f553a7f6c "YID" . + "false"^^ . + _:N408e07ff62814e499b57f01673aebfa9 . + "https://monarch-initiative.github.io/mondo" . + _:N60e7207a03ef4af2bd6742dc3613229a . +_:Nffb65aab7cff46049bcb3845b7e54a32 "reactome" . + "false"^^ . +_:Nf6033d07d4d94c6da1ad5b9678bb51b1 "cbioportal" . +_:Nf487129af8264841b481d4f81e6e177d . + "The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology." . + _:N87d1c357772b428a8dea1597afa531c4 . +_:N238c7a37ec0c417e9338370b30eeb1e3 . + . +_:Nb60d22eb00c047f1ad92598d37965608 . +_:N14f44d02819b4f76910fbed5e611513b "tarbase" . + "None" . + "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data." . + "true"^^ . + "https://github.com/obophenotype/porifera-ontology" . +_:N2600717678a14e5297bbb6d6e414b694 "NEUROMORPHO" . + _:N9922564816cd43a2983729532f81e17f . +_:N71dd678147ab4664bbfc578e83ff87ad . +_:N7fe62b0105984f09b44d10bbb32a1a4c . +_:N3044c041ff8e4a9d8ef3046622f0b66a . +_:N8fb833c26a964905a9354d6d708ebb99 . +_:N2a46b4ab9e0040e6aa0b68e660536386 "medgen" . + "WP732" . +_:N63faf99915f64df9a937ed7fcafcc668 . +_:N127201fe304d4276b93546dd233f9218 "interpro" . +_:Nf35d168f193c4a37b75abfb5f7d767d0 "KEGG.REACTION" . +_:Ndacdbc34578e4416a9450ef060c5c81d "pathwaycommons" . + _:Nbbc63def8fb34bebbd61dd465e56c126 . + "Activity" . + _:Nd943c937207d44e88a8a4639d86a411f . + "https://identifiers.org/echobase:$1" . + _:Nafbcd0ad131248eea109b422c9cf855a . +_:N94eb63e92a3e490bbdc1b5fc1ab5bc9d "BACMAP.BIOG" . +_:N60e63b4b07394b248f0800876ab710a8 . + "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway." . + _:Nfe777c3588ab4d45be1875b9a35dbd59 . + "^\\w+(\\_)?\\d+(\\.\\d+)?$" . +_:N73df4db795244208909f2a3424000513 "JCM" . + _:N85704ef5c0f643b1a599f6364496ef37 . +_:N78e61a42273d44a3945b9664cdb67499 . + _:N9dfb4b5be783465b863a3338f2c756b8 . +_:N96d2f49abe5e4ef1a6ef09c19808f1db "GeneWiki" . +_:Nd7bc1fc257414dbeb5dfa03865680cb8 "FBcv" . + . + . + _:N005d24db993144cc976862b884b3cffa . + . +_:Nf45ce894a4964066bcf217d183fa1420 . + "hajo.rijgersberg@wur.nl" . + "None" . +_:N8578c234315947d38e493eb987891e4f . +_:N4917180a3d7b45f8993bbbae6bf3dc32 . +_:Nee49069bff224f16ac594e27da966619 . +_:Nce49de24f5db4abca9c19c7eab750f49 "prov" . + "^ACYPI\\d{6}(-RA)?$" . + "false"^^ . +_:N33fbbbe0f46f4da6a1faaf6899664711 "phosphosite.protein" . + "RA01.0" . +_:Ne8e6b92a357d4087a11314b6fc56b6f0 "CLDB" . +_:N16f9f38ef51b47b7bf680db307532bab . + "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer." . +_:Ncc18caaa7ffa49969433775f1fab6270 . + "WikiGenes" . +_:Nef89ae405eea49f0ad776cb9097f5775 "wormpep" . +_:Nbb41dd1e7ced4e03931f835a129041d4 "SEPIO" . +_:Nd63e1ad9eb3441d4a47db97cf647022f "multicellds.cell_line" . + "None" . + "^[a-zA-Z0-9][A-Za-z0-9_]+$" . +_:N94052b3b7e0a404c9da6d1fcff3cfcc6 "peroxibase" . +_:N11b1c25da383430c88c731293ed4273c . +_:N660ba1abd5c04ef8af1f70ad9187b689 "flowrepository" . +_:Nc431ae60df9a4a41817a6fa522f428f2 "co_322" . + "false"^^ . +_:Nbc7381c9d0874fad8a32e14a29bd5afa . + _:N072174f3d5ea4407a8d9b670c3ce3774 . +_:N949b4e181ef74b0483747738b2a8eb96 . + _:N1e09e6945d314255869faa1e59ea950e . +_:Nc0f8075427e7431589a59cb91de386db "odor" . + "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes." . +_:N26109b1a75e34fd0af16297a8a46dcd9 . + "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" . + "^\\d{7}$" . + "None" . +_:N0948ee83ec8a47c7af2463ec95e94fed "ECYANO.ENTITY" . + "https://identifiers.org/rapdb.transcript:$1" . +_:Nf9a64022b4f7461ba5090d35c202d74f . + "CADAFLAT00006211" . +_:Nc66b5b8d00274f79b830ae2a632fe46f "rhea" . +_:N957da5dfdf2640708c01dd56fb827342 "BIOMODELS.DB" . +_:Nf7f1b7e8a914408687303a804b8c745f "MCO" . + "None" . +_:N627860dba0144373830ebaaa57264fce . +_:N6cab9c7d976b48b9b78338ddb902c175 . + "https://www.ebi.ac.uk/ols/ontologies/co_330/terms?iri=http://purl.obolibrary.org/obo/CO_330_$1" . + "egon.willighagen@gmail.com" . +_:Nccc01f0e36964b9eb7428856fe990b35 . +_:N6aa48a8c17e149d3b7959f3593111219 "ORYZABASE.MUTANT" . + _:N3991fb870fba4ddabecb19a86b2b366a . + "AURKA" . +_:Nbeffd964b15e49d99ba68903a410160e "UMBBD.PATHWAY" . +_:N44072a7f5e594d91890a4047658ee905 . + "None" . +_:N8af0d8f3d2c44b169cf209958a9b1a5c "mzspec" . + "http://purl.obolibrary.org/obo/fbbt" . + "http://metacyc.org/" . + "^ENSG\\d{11}$" . + "^\\d+$" . + "^[a-z0-9\\-_]+$" . + "None" . +_:N7c77574c1a274acca091bb916218fe28 "GALEN" . + "adw_geeks@umich.edu" . + "false"^^ . + "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)." . + "^\\d+$" . + "https://identifiers.org/asin:$1" . + "Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa." . +_:N9f7c0478198346d39dc8c95d2dac92ae . +_:N18d1a4c7053e487dab802c4358633aa0 . + "Search Tool for Retrieval of Interacting Genes/Proteins" . +_:N6b470e9d06a8430991b36dcdaddca9e3 . + "https://www.ebi.ac.uk/ols/ontologies/ovae/terms?iri=http://purl.obolibrary.org/obo/OVAE_$1" . + _:N69b4b8ac3d9b4944b62211beaa334202 . + . +_:Nd0b06170313e4273bfdb47bbaa8ad097 . + . + "false"^^ . + "None" . + "00100037" . + "https://identifiers.org/gudmap:$1" . + "false"^^ . +_:N065c8d4b17f34b7ebb306b731394ae34 . + "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)?" . +_:N4eec6012491f4414873a36beea6c0cb4 . + "false"^^ . +_:N9ec7a4d689a1478ba09792e2cf35cc77 . +_:N3fe83730d48e4557af8ca597c69f6ead . + "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible." . + "http://www.evoio.org/wiki/MIAPA" . + _:N5a2f226f7f8141f78330635c94bcd38a . + _:N325431fe708f49e7b5d0450604963122 . + "https://identifiers.org/pscdb:$1" . + "https://identifiers.org/bold.taxonomy:$1" . + . + _:Ncf9071a20e0e41a3af87946672920bf6 . + "^UO:\\d{7}?" . +_:N0ee451b4bbc64761a685edb3bc2ee449 . +_:N1082d91f2e1f40cb829ccabeefb46da7 . + _:N935c8868a5a1424ba049aa0bda278232 . + _:N47b311b0f4304d4081f38ef3111f4cc9 . + _:Na6f9f4c911594efd956e93fed1657efb . + _:N18b48308f3f5493bbcee86294e1871cc . + _:Ne2b38b301c4e45bbb0914d6ef27da749 . + _:Nc0f48ce744b34fb2a4ffc9f601f110bd . + "false"^^ . +_:N4a9e2d1030ba456782bb447f1ebc2698 "GEXO" . +_:N955c4146e43947e587de3430290a3707 . + "https://identifiers.org/grsdb:$1" . + _:Nc7583a5c91384d9c8d27277a00187a73 . +_:N8f1c0c89c70d496db2abe09219940d22 . +_:N77045af58cdf47bb91a5c72303e6fe9d "ZFS" . +_:N9ab96fa413d640e9b0487d8ec5d51d44 . +_:N31a558f1d8ea44d28dd9028c992b5335 . +_:N626a8320525c4003a0157d9f37e33c9b . + _:N6472b7c7faaa496c9706d5c9a7e0b947 . + . +_:N4abe2e05da3e4c8683e99a8bea53bb24 . + "Data Use Ontology" . + . + "false"^^ . + _:Nb70186fe0e4a4c7395f0c3d041810346 . +_:Na9cabeb8f977496483ff483a3cd2645f . + "INSDC CDS" . + "helpdesk@cropontology-curationtool.org" . + . +_:Nd105344f5a674f8da40de58746a7a30d . + . + "true"^^ . + "^PD\\d+$" . +_:N91b61392e0464dc48453a09c55fc3d29 . + _:N98c8e2020b834bc5b07ece4655137ad5 . +_:N497341331c4747e998a19ac709517dc0 "piroplasma" . +_:N99d72295645a43b081d2bd862b138a38 "MONDO" . + "Gender, Sex, and Sexual Orientation (GSSO) ontology" . +_:Nd1e222dbee0d490e8d0b435c159bcf9f "ATFDB.FAMILY" . +_:N1bdb3eee7f384195a54508956df78ec8 "dashr" . + "https://ssbd.riken.jp/database/dataset/$1" . + . +_:N4c97ac86a14442b389378ce92527dd0e "vo" . + _:N53f26baa9bca49569e20d07fa4401455 . +_:N1edfccad176f4aa09c8d5e8cca9e4b78 . +_:Ne0d3aa9422f442c7aea1876b0b69c3dc . +_:Nd4963553bf81446a9d6b764d1e8afc9b . + "false"^^ . + _:N0bba5c28be574e35bdd2d70acca99355 . +_:N34eafb1932744c5a8d844b7d9528d346 . + . + _:Ne5fb57a24d7d4d1882e841971b4d995f . +_:N88b4aa90c60a46159a83cdb0b070ee23 . +_:N0832ad41adae406cac7e57d6393b4f1f "CELLOSAURUS" . + _:N74c690ba4a9348db9e21695da63acada . + "None" . +_:Nf33a5e43e0934ba3bdb81d6a84d213a3 "fovt" . +_:Nbb75a2fe2d694b8286d72e029c0cc5b7 "cattleqtldb" . +_:Nc25d42d228bb492798ce68c6f3027cb4 . +_:N59d9c3d1ec0c4b28a58ffad08fce0e43 "MICROSCOPE" . + "https://www.ebi.ac.uk/ols/ontologies/bfo/terms?iri=http://purl.obolibrary.org/obo/BFO_$1" . + "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways." . + "Mammalian Feeding Muscle Ontology" . + "https://open.med.harvard.edu/wiki/display/eaglei/Ontology" . +_:N33fbbbe0f46f4da6a1faaf6899664711 . + "https://identifiers.org/atcc:$1" . +_:N8ae0e5f0a2c042b8a3b038fb4778b4b5 "phosphopoint.kinase" . +_:N3d8196bb244642f89f49cdd7f93fb992 . +_:N728ce796275b4863964b48c17902e518 . +_:Na00bfbf203fc40fbb63ecc2527a493f9 . +_:Ndc814b6c4409407ca1a438cdcef5ed90 "ASAP" . + _:N3c4c438bbe504c8b999f6da1ba03a3fe . + _:N005aeea54d1b4e6fbd8387745c0491ab . +_:N7d3e131e25e54fa7b3f33a4a36e9d3af . +_:N955c4146e43947e587de3430290a3707 "snomedct" . +_:N0800c26950534dd4ae965d2e81217946 . +_:N8fda8622a27c4aff8eb4d686ccfaa1e8 . + _:N3991ca075dcf451f8b3c9900172b3092 . + . + "helpdesk@cropontology-curationtool.org" . + "PR000001" . +_:N46e757c864f1482dbdc184c735a61772 "ncit" . +_:Nc0a6a2cd57bf47ae90b6274eb0b9bdae . +_:Nf10ec361fd54475189057d3840b0721b . + "TTD Target" . + "^[A-Z_0-9]+$" . +_:N3e906588476740dcaa71f31f2f96e626 . + "https://www.ebi.ac.uk/ols/ontologies/rexo/terms?iri=http://purl.obolibrary.org/obo/REXO_$1" . + "https://www.ebi.ac.uk/ols/ontologies/co_321/terms?iri=http://purl.obolibrary.org/obo/CO_321_$1" . +_:N236c402bbf3643b1ae7d1b93420ab344 . +_:N69bca63a9d494699be602b578d1045ad "MobiDB" . +_:N5fa01e16d36244b4912bac69ef062b7d . +_:N4ebbd675e76f42b2a5e85d080c5098e7 . +_:N4113d057a87f4454846a017a11236278 . +_:N5a78dc600d7749b5a093e96d02acae97 "HANCESTRO" . + . +_:Nea6cb7fa3daf409e895112dd9abc80f6 "DARC" . + "^\\d+$" . +_:N1f05460b89ed4daa9a63d6ea28e58ae3 . + _:N084936afc5444ebe90c293157e1af78f . +_:N3da480d58f04497a9ea8d2898bbe6482 . + "false"^^ . +_:N5141597c30e9445187619b40776aaa75 . +_:Nb2dfba330b314a1aa94ac104d6025d1f . +_:N18ddfd1aff814021987ced35a12834e5 . + "http://www.human-phenotype-ontology.org/" . + _:N5a12aa340d384cd88953bbf378555d1b . + "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded." . +_:N5b90f6783d394007aeb0511b376f7db2 . + "false"^^ . + "None" . + "true"^^ . +_:Nd6d1a4cfac9a486fbf22867f2c363206 . +_:N0db4a45cf66e454084a841ef77f1a0d1 "ega.study" . + "false"^^ . + . + "Genotype Ontology" . + . + _:N5b3defdf5e5a48e8a1994ce61a66505c . + _:N0d4e150e6cf14312bfc05dcf34bc7b04 . +_:N6bbb4c8c9547422d96376b33bbd7386a . + . + "https://identifiers.org/neurolex:$1" . +_:N05b79e32af1e414c896f4bbea20ee587 . +_:N8c99efaf30e94f6fa41c3e8a7dd4eca0 . + "^[0-9a-zA-Z]+$" . +_:N8d552fe43519487494f546c67a976418 . +_:N6d271f483f1c46f4abc79b089de789a8 . +_:N82a83b8062d04366ad3c5f983c1161f4 "VBASE2" . + "F-SNP" . +_:Nabad437312b2484ebf923b430ff59075 . +_:Naf32b4c6aa954e8897151864369da756 . +_:Ne72300ff0a2e4097b7a78fdd194d6813 "SISU" . + "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies." . + "6017782" . +_:N932876cb55124ca490847a026e5fdbb8 . + _:Nd5680130fae24b6d8e476def451bdaa8 . +_:N059c0e55a70c4398b9057c67c7b5fee4 "ARRAYEXPRESS" . + . +_:N4c0650c2431e45d39bf1136ae1e1040b "zinc" . +_:Neb2e818566a1405cbd85df264e8c54a9 "BEETLEBASE" . +_:Nad97919a453841efa74914e62990be25 . +_:Ncfbfbf7adf6d467d93362b83f2f7d8d6 . +_:Nb429cb01cfdc4ff081febf56fc74f6df . +_:Nfff1e4ebcb7f45b9a5953f18143de8c3 . +_:Ncbecc85381294f758f19a2d6d9303324 . +_:Nf43178f152ec46eb85b442d91030d08d . + "TC010103" . + "PED00037" . +_:Nc9285dd3bea341a4919ee9021cfcd25d . +_:N41ace234ffe2411c8bf6c087276a0d0b . +_:N333b3190fc2041a7a2e0d89532782d09 "GOREL" . +_:Ne0006543ab874a8bb50089f72bfb1f15 . + "false"^^ . +_:N0f1b3873aea24d2789cf486e57647e10 . + "051" . +_:N93c1d5ef68e1407e89c361e9cc8a1418 "biosystems" . + . + _:Nab6e191a05414027bf0a70d9ae37b3f9 . + _:Na519e370be7743ceabe180b384f2a0db . + "AMDEFA" . +_:N24547db28e3e453e840cfe84166fb3e6 "CARO" . + _:Nd4dcb29e9b044e05a0dcea2a2e46ede1 . +_:N34c69bac7a1b460691a23737f2561b84 . +_:Ndbf4c6e662cd44c08a4c4921f247f7e0 . +_:N19159d206c124ea3b5a68f64e47bd6b5 . +_:Ncca253885cfb4646b321ca366f542844 "P3590" . + "false"^^ . +_:Nd682702553014dae959466074a9cf58a "mpath" . + "A structured controlled vocabulary of stage-specific anatomical structures of the developing human." . +_:N8d365642bb074b39aa26f60ff4125100 . +_:N63359f48580c440aba2da2a03f0750de "gramene.growthstage" . + "false"^^ . + _:Nbe9672f17377416c949e5507f66538a9 . +_:Ncfbfbf7adf6d467d93362b83f2f7d8d6 "UniPathway" . +_:N6dc88724e5f944e6b3644407aaf9c913 "LRG" . +_:N585dcf478e2545a09b891c5be3bfa302 . + _:N236c402bbf3643b1ae7d1b93420ab344 . +_:N593477ba105e4ff6b80fd24436836936 . + "^NONHSAG\\d{5}$" . + "false"^^ . + "^EG\\d+$" . +_:N2b39ae2a5bc84a4ebd12d56b5a376cff . +_:N86b64e5764044507b31fa88542c1b2b7 "mf" . + . + _:N114bf2184337497387eaab666666d33f . +_:Nde238c6e5dc9469fb9643ee5a08e13d2 . + "false"^^ . +_:Ncbd165bcf0df42b5b764116ce5448d0c "P1578" . +_:N0a9b0d406fdc46ef86915ca1167ac085 "ENSEMBL.PLANT" . +_:N1363c706f5134c61a9dc3d7ebbcd94e5 . +_:N7c62834e9e86429a9e0459bba3434bd2 . + "false"^^ . + "Tissue List" . + . + "PRINTS compendium of protein fingerprints" . + _:Nadd7f09834de4844b50fe7789dc2c57b . + . +_:Nef89ae405eea49f0ad776cb9097f5775 . + "None" . +_:N80bff3e13c5e41288ae890f663fecc53 . +_:N5fa01e16d36244b4912bac69ef062b7d "ASCL" . +_:N5ecb22c807ed41208f9581aa375b43ee "swh" . + "PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2" . +_:N4baa2608862c4b79a6ef4369fd011884 . + _:N21b125f1ad14411087a9668d58e59426 . + "https://identifiers.org/EO:$1" . +_:N973bf26e595b416f8d5d6508005ebb09 . +_:N2feac3e5a038471fac5d25e3cb0aebe6 . +_:N3586e4eea34149a2b6ee6b921f2014c6 "phosphopoint.protein" . + "^[A-Za-z0-9]+$" . +_:N501096689a83414a814a55e4c7ef2898 "dashr.expression" . +_:N07e2969bb90745f5969dc9f8ea47e453 "MMP.DB" . +_:N94052b3b7e0a404c9da6d1fcff3cfcc6 . + "^\\d+$" . + _:N6ff3e81989194bc2944afcea6dd3c20c . +_:N4dce410c17c44a389b606ae745fc7f9e . + "https://identifiers.org/neurovault.collection:$1" . + "https://identifiers.org/grid:$1" . + _:N449bcc3858d1470fb174be7c15f20575 . +_:N1cd4eef3ad3a43c2930489523c6ac90f "GXA.GENE" . + "https://www.rhea-db.org" . +_:N53847fc234244905948e07a9ffefe165 . +_:Ncf23c5bec81342eb824c467aec0ff76a . +_:N972bcc57b56442b3835a806b8400abea "HOGENOM" . + . + . + "http://www.w3.org/2001/XMLSchema" . +_:Nfba2cc228da441baa4e8c8010dfe152a "psdo" . +_:N71c29ee7a7a1443082ee2478ac524d87 . + "ICEberg family" . +_:Nb8de8d3388464cc383449485e8cf0a79 "SIO" . +_:Nc91fd7bd6b854d3b94e15efba9ad21ec . +_:N4014a7f386ce458ba2b30fce8df690b1 "GENPEPT" . +_:N71ffee4e55f64a5c8e58cfa30826c4f6 "sisu" . + _:N7ba1934fafd540b287979dc4c0c75f67 . + . + _:N815ca4a473924ad99be0ecc01b0e331c . +_:N0e12672811fb4e589033a49b062f56a9 "HSSP" . +_:Nc74bb1a1900a477492d0713423e882f7 . +_:N425f3ccf7e2c46f6abf9a54e5a480ef4 . +_:Nc8c3e12bada44fd4b96091e8fe6aeb5d . + "^\\d{7}$" . + _:N8ec108ff1a354742a1f86e34e1e27153 . +_:N008218aad4e14a4998886befe9aaffb7 . +_:N2cd0977b9a1541019bf7ff37b75f4760 . +_:N7a9447d649024e51b306637bad32c4a5 "CDAO" . + "^\\d+$" . + "^[a-z0-9\\-]+$" . +_:Nebbf4cdff6dc44eb8a530ad6266987b5 . + . + _:N10a41bd70c3b464287e4638739522678 . + _:N0676118ead1c4c1ea5ad6b30631b8995 . +_:Nfbf6ff83ae2b4119870b66ebf4a48c09 "RNAMODS" . + _:N711480100f0345e1a57dfc0e8943ea53 . + "^SO:\\d{7}$" . + "false"^^ . +_:N899244c3c6f84691981e22cffb56994d "worms" . + "^B\\d{5}$" . + "Pathway Commons" . + _:Ncf9c4e20ea9b4b77b552ec63e79b4e9c . +_:N8193de38a54d4827be41481ddca10a61 . + "https://identifiers.org/bioportal:$1" . +_:N197e4d79a0d741d696f5e906f7f9ae42 "UBIO.NAMEBANK" . +_:N8b373ba7ca25416f96c2e452b4980d35 . + "^[0-9]+$" . +_:N33eb544740724625b6686e04ff66b6b1 "dashr.expression" . + _:Nae9e38495d444c23ae6b635fdd549999 . 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+_:Nb4f5f41b435142b6ad96be59c0a0d9d2 . + "None" . +_:Nc9904fc018b34ade8d541da147791e61 . +_:Nc921a2d2555e456da17b5721278c12b1 "PATHWAYCOMMONS" . +_:N7d7fa6c269a944dcaf2ff1255f01108b . + "https://www.ebi.ac.uk/ols/ontologies/ppo/terms?iri=http://purl.obolibrary.org/obo/PPO_$1" . +_:N12824a2c768a44b6922571c6ed72d297 "METACYC.REACTION" . +_:N7dc87295db9547ad963027e8ec301f6c "ISFINDER" . +_:N407790e5df3948d08fbcc558c5f2fa69 . + _:N2e57a4f05cd44194b24678991345b487 . +_:N862eeecd326a42878fe01b828d743f1a . +_:N3b33510e97774c2582946300c5886115 . + "10142" . + . + _:Nd264557ca35a426f81b93acdcd7eee68 . +_:N3b28771c5b814b459243886638d419d6 . + _:Ncf5cea740cb041c5ab2887d99b87564b . + "MEROPS peptidase database" . +_:Nd3b86306ba8c4e979fedb61beac30fad . + "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information." . +_:N06caa60605644b2481de5c77a3f142c4 . +_:Naced988e6a854c568765acd25caa71e2 . +_:N4ae0eda0e1f34044ad9054b8aa8cadbc "PW" . +_:N68eea65049f742a7a02fa0817af74766 . +_:N3951549e824a4c27b94baa3a83d9ef41 . + "^\\d+$" . + "FlyBase Controlled Vocabulary" . +_:N501d0591b002410786e4ea0e2c11b44e . + _:N5033639141384a3a9bce665c29e26be3 . +_:N446050346538422aa24e6087deb42a9d . + "Small Angle Scattering Biological Data Bank" . +_:N2360cc03817c413a9617bea7a12246d3 . +_:Nef0af9916c2745c89eece2269cdd3bee . +_:N888c4ca365824b069d56738ded1eb5f7 . + _:N87c80fbef24f43cabf97693af87ea44d . + "jaiswalp@science.oregonstate.edu" . + "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community." . + "false"^^ . +_:N9ab96fa413d640e9b0487d8ec5d51d44 "tarbase" . +_:Nd29c2bdd613b409fb8500e0ac48880e4 . + "false"^^ . + "false"^^ . + . + "None" . +_:Nee5001ef656c4954803add1fbe3f8c54 . + "false"^^ . +_:N65e8379582234049b1e88ab1f073e82f "gabi" . + "https://github.com/MIT-LCP/mimic-omop" . +_:Ne85b7a95d724464cb4ada98855da93e6 . +_:N2e7dcac0ddff469989cb0cb8eed6a744 "hp" . +_:N9317a57cf53746b4b32b0632defec679 . +_:Ndd0d12d9599742ad9f288954de40644c "pigqtldb" . +_:Nd3eba3ebb05e4a818cdd04ce8a31cbe1 "INTERPRO" . +_:N8dae0ebddda74e6eac2d650e06f0d858 . + _:N07e2969bb90745f5969dc9f8ea47e453 . + _:N3f22814277af42608b5fae3d6b69b157 . + "Disease Class" . +_:Nf487129af8264841b481d4f81e6e177d . +_:N187711bb1f0e40dd91cda5a2836fce98 "STRING" . +_:Ne545a1af974c450a87f46019ec65e8c6 . + _:Na64ca7c8e1f743feb9047cddc3d178c1 . + "None" . +_:N89ecc392a94642438a2aa9b57419a392 . +_:Nf778f2447dbb479486b852c7faf6f275 "PW" . + _:Nad15d1beb13a46f18bac2ce7bb58876c . + "Ontology of Genetic Susceptibility Factor" . + . + "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies." . +_:Nf57ef7763459434c9ebc5f219e9e4036 . +_:N86c79df87da640be9b95e15c210000e2 . + _:Nc2e25b9504024b1c961b5377a81007b2 . + "curien" . + "haendel@ohsu.edu" . + "false"^^ . + "uBio NameBank" . + "^G(PL|SM|SE|DS)\\d+$" . +_:Nc6276c11ac514679b43e4c5355e3e48d "prov" . + "false"^^ . + "https://foodon.org/" . + _:Nf68d350653f841409286d87c9ce82589 . + _:Nfd3da05d3e7b44b0ace7fbfd36ce426b . +_:N5b246ef0360b4866a4902d33f8ef6000 . + "RAP-DB Locus" . +_:N5752f4045d874cff90fecee9ac78bfba . +_:Nc9382f5090b44f158a7caa22ed4ff326 . +_:N062ea13b48f84a4d90c5b64906161329 . +_:Nce751f5be2264af5bced296248a93f0e . +_:Nd8b87e83734b406b803d7cb5fa63e109 "Pfam" . +_:Nae4585bf5d8640a88dfd63c590ba70ea . + _:Ncfdce173db2047a6a4f6e83d56ba5e9f . + _:N8b1e383535154f698796c801b26e8d71 . +_:N946c1ab86ed146c9a3cdfe7a4b3832c8 . +_:N34fa1b0123384afaa68901b49e6e9e5b . + _:N93c1d5ef68e1407e89c361e9cc8a1418 . +_:Nfd84f716ff75480fbeccd6904764af53 . + . +_:N599fbc7b08e54f45bf0ba3f5740b3f02 . +_:N306ee873ec584fdca797204e08f48169 . +_:Nbf3080bb6ad143e18c5bc214bda48c86 . + "false"^^ . + _:N13be46b2193c4f5b80a386246e86cac4 . +_:N78e61a42273d44a3945b9664cdb67499 . +_:N7f70ee37e1374386969a9306e841f3e8 . + "https://identifiers.org/icd:$1" . +_:N613cd7a7aab3451bab9f2f2597b1c3cf "prodom" . +_:N73db0f2500494390aed18d8bf53dff4f . + _:Nc75b9d641ae646b2afbf36c12b5892f4 . + "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis." . + "GeneDB" . + "Genotype-Tissue Expression" . +_:N72face36a5f34d06ade62aecce227278 . +_:Nb785409ba42747c0bb4ca39eb6218187 "mpio" . + . + "Ontology for Nutritional Epidemiology" . +_:N263c9655958d46d99fd91409cc77ec75 "INO" . + _:N90e3371da6b44d8e8a2522f93d0d0de4 . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes." . +_:N493cec18ed004898b7fc74034f958e48 . + _:Nc2bb0c4f3f10404298d7c2d9b38d709c . +_:Nbb5ab6d476b64e079bb20e860ef64cbb . +_:Ncb83dfb88bb64008ae2a40355fc5382c "mgnify.proj" . +_:Nc384f38a27f24d7eb13afaa8f27448f0 "MIRO" . +_:N84b38c97f16f4cb1a422d8a2b724b769 . + "BacMap Biography" . + _:N9ad5bab90521489eb2f67ab0f615d5ed . +_:Nceeaeaf20be7423baaebdcf76d73153c "classyfire" . +_:N139cbbab8d4e46f69a4184069c907566 . +_:Na4f01d912e364f01b7f8c7dd820f3e1b . +_:N0fd9b1dfdd8646aca531f064733f28ae . + _:Na9816ba4366a48e8995d323fdcb74b0d . +_:Nb9ae12c56daf4929b8056fed7c64884d . +_:Nc91fd7bd6b854d3b94e15efba9ad21ec . + _:Na718214d4c3e4d70a253c8497f9668c2 . +_:N05c7cefb36324d4c8a303c3c722aef09 "licebase" . +_:N46206fa4e6f74295bc34fe9cdb6dcb4f "ascl" . +_:N8b12d55083bf4eb3a728907f1df3d94c . + "None" . + "http://euhcvdb.ibcp.fr" . + "None" . + _:N0b01242669a248988ebb3294b78738cd . + "^\\d{7}$" . + _:Nb1519e9f33924eb48cbd4d8abd0249a3 . + "None" . +_:N9a69dedfeb0c48059214303b842195f5 . +_:Naa0cdf5feeac415084c567d26f0421bf . + "3305" . +_:N8508ab4c454543fcaf5ab3c699277b78 . + _:N7c0f88826f534403a0a6875565ddf259 . + "^[A-Za-z 0-9]+$" . + _:Ne526831af9e14f78be026653faa083fa . +_:N34383e16f7c947e9bed1d65f62bad5f8 "cas" . + "Rice Genome Annotation Project" . + "D001151" . +_:Ne664aab8c2b84b869c9b0913a7e9224e "hdr" . + "^URS[0-9A-F]{10}(\\_\\d+)?$" . +_:N826cd6a56a694c2ab8c6f85e103b1507 . + . +_:N0ff15e29cdd74809a823b11a95c704f1 "LIGANDEXPO" . +_:N2876b4d9e67f4255a43362c31d5c1660 . +_:Nfab8239ec9044300bbb6b5d77f60f4a5 "ADW" . +_:N1f05460b89ed4daa9a63d6ea28e58ae3 "MEDDRA" . +_:N6b449dac218d4985a96c0d38bb7eb2ba . + "J55.713G" . + _:N9c441606434344d0aaa4057cec0155a2 . +_:N5d3fa466a46d4effa966d51bd865aa9c "kegg.compound" . + "0000006" . + . + "https://identifiers.org/arachnoserver:$1" . + _:N3464dc6632d74f52b5bbb85aa0d12aaf . + . + "false"^^ . + "https://www.ncbi.nlm.nih.gov/medgen" . + "1755" . +_:Nb1519e9f33924eb48cbd4d8abd0249a3 "MF" . + "Agricultural Online Access" . + "^\\w+(\\.)?\\d+$" . + "^D\\d+$" . + "0000001" . +_:Ne526831af9e14f78be026653faa083fa . + "Electron Microscopy Public Image Archive" . +_:Ncf5cea740cb041c5ab2887d99b87564b . + "batchelorc@rsc.org" . +_:N0fdcd9cfc3a340a2bec94f2e2ffbe211 . +_:N62f70f197fc14f119a36b5151844fcf0 . + "EchoBASE post-genomic database for Escherichia coli" . +_:Nd074d13c63424f3bb0b0b8cbb607b651 "protonet.proteincard" . + _:Nac6acaaa1f084d689529eea3035530f2 . + "12300" . +_:Ne8e6b1adcfcb458897cdf3b951ddb515 "modeldb" . + "bgee@sib.swiss" . + "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$" . +_:N005aeea54d1b4e6fbd8387745c0491ab . +_:Nd7bb90bf128848db8cf259384a834911 . +_:Nddc5591f60a243eb891c2c22d17aad4c "glycoepitope" . +_:Nc57bf558223342329242414f4f47860e . + "https://identifiers.org/csd:$1" . + "^[A-Z0-9]+$" . +_:Ndaaff266250c4fde9e96fde8ac2f11e0 "PSIMOD" . +_:N8ecf4bd22f64462f97cfd81781346d37 "RXCUI" . +_:Nb29d0f49f7384b8b8ed0d8d4df18ded5 . + "Cell Line Ontology" . +_:N1ab4affee697458089fa3db3b3f346d5 . + "PRJDB3" . + "Bio-MINDER Tissue Database" . + _:Nce751f5be2264af5bced296248a93f0e . + . + "None" . +_:N1dffa901799642f7ad505d4582b3f537 . + "None" . +_:Nc778a49f67714f3abee54c5565d10982 . + _:N30373bc4d6e04750b86d54f1364cfb56 . + "true"^^ . +_:Nf05fd9c782464f5584caaa70a6ac4d62 "HOM" . + "false"^^ . + "SwissLipid" . +_:N493a61e1743d49eb9fabdb8f302a11ac "hprd" . + "None" . + "false"^^ . +_:Nb55c1549aacf4a4ebfa326cadbdee917 "umls" . + "None" . +_:N3f5bb241e1e942b08ad828d950e27fac . + "eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories)." . +_:Nf1eddd7492504b01b129f077bd5c80c3 . +_:Nc02f37ddef8c4bc8950257f460d0aa6c . +_:N5bb6ef30f47e44e1b2d2ee2fea94a92d . + _:N029a2f9a7a674d42b0245e58f9e8c906 . +_:Nceb92dc1652349e8983e25009fede9b7 . + "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins." . + "pns12@hermes.cam.ac.uk" . +_:N3fe83730d48e4557af8ca597c69f6ead . + "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies." . + _:N5ef92a05e8ab4dbc8fd57ebf7a108395 . + "https://identifiers.org/worms:$1" . + "KIAA0001" . +_:N43ba2ab1a23840ac90812c12b47d746f . + . + "The SEED;" . + "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant." . + _:N5e3034045dbe4c0f8af997c603a4ed17 . +_:Na325059a1bea497f911bdc0d49e347fb "BCO" . + . +_:N192c789ea5fe45ba82ff48c1dc5cea98 . +_:N00037643accd467a8559313fb4807674 . + "false"^^ . +_:N1082d91f2e1f40cb829ccabeefb46da7 . +_:N63cc32604acd4d01b2845db259e7b50a . +_:N1ebc4df1cc5647698ce84e1dd3d6bc97 "CARO" . +_:N42a80997bac644fc9518f077a9a54670 "mex" . +_:Nd4ffd9ab70c84e4f834270290d94a8aa . +_:N12c109098ec7423bad745776bb38f022 "unii" . + . + "MU9_3181" . + "1801.012" . +_:N0b0d6daeebea460f8ae0eb74db3df685 "gmd.ref" . +_:Nb1e0969dd2a54e268d30a6c06303a52a . + "^IID\\d+$" . +_:Nf86770241770422eb4e5d1786330168d . +_:N141ba1c031d94a52896a95780ae6c7bb . +_:N423adc2a6d4041fa9b39304f87e99e8e "gwascentral.study" . +_:N4f23d4eb1f7d44e9905785c028de617c "WBPhenotype" . +_:Nbd2e633ffdf5408eaf049dbfbfd50587 "bacdive" . +_:N05d6c3d143ad4fe2a60d93103a713031 "inchikey" . +_:N1dabbbda973a4439b5b9d171058039ad . + _:N4a9e2d1030ba456782bb447f1ebc2698 . + _:Nbbbb21222628430dadb9d4f764642665 . +_:Na2bf0a0197db4e93958595c18695d0f2 "RDFS" . +_:N9a69dedfeb0c48059214303b842195f5 "3DMET" . + "^[A-Za-z_0-9]+$" . + "https://identifiers.org/topdb:$1" . + "^PR\\d{5}$" . +_:Ndcdc5bf451b346409bdc8b16a8085630 . +_:Na9cabeb8f977496483ff483a3cd2645f . + "https://identifiers.org/clinvar.submission:$1" . + "TVAG_386080" . + _:N7359d206964e4e979a7818af4318fc9c . +_:N270fe638aaef44fea93156c3cb6b8818 . +_:Ne3393f00567040acabe21b35f95da854 . +_:N6bb9fbe883d64230b76057046bf70ed1 "atcc" . + _:Nf0c42a4c56bc462a81021e592631db44 . +_:Nc6f01b6494294af0b8aeb9e61787bab6 . + _:N51ebf49827934f618b5e721aee4c13ec . + "https://ratmine.mcw.edu/ontology/disease/RDO.obo" . + "Obstetric and Neonatal Ontology" . +_:N7d3d1f9b0d7844128a2bbee95159ea08 . +_:N7411f1e9e29346f98db96fc1d53c782d . + "true"^^ . +_:N192c789ea5fe45ba82ff48c1dc5cea98 "SO" . + "UniProt Diseases" . + "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases." . + _:N3099ae174b3e47068c0c77789abd0ed1 . + _:N35da353cf0504adfbdd15bb1e28a6f02 . +_:N18ddfd1aff814021987ced35a12834e5 "nextdb" . + . +_:N34fa1b0123384afaa68901b49e6e9e5b . + "Animal natural history and life history" . +_:N09d018d562964490a9eb14b44120aac3 . + "^\\d+\\-\\d+\\-\\d+" . + "https://identifiers.org/mint:$1" . + "None" . +_:N18cb1c5e41dd480784b07346d12b5591 . + "cthoyt@gmail.com" . + . + "None" . + "The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF)." . + . + "^\\d{1,7}\\-\\d{2}\\-\\d$" . +_:N39334e80cb4343119932fb162b45ff65 "sgn" . + "false"^^ . + "miRNA Database" . + "http://www.w3.org/ns/activitystreams#$1" . +_:N05c625c40b2044f9859d8c305e0d35b1 . + "https://identifiers.org/cryptodb:$1" . + "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites." . +_:Nbf015f1fb9da4e378abad99b2403e799 . + "The Prescription of Drugs Ontology" . +_:N1363c706f5134c61a9dc3d7ebbcd94e5 "dbSNP" . + _:N628de0cc51d94c8db7f9c4db7929ca33 . + _:N703970fb68b14074a2a9ec741c0ba37b . + "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." . +_:N3ded3ae324d4494bb16086d6a8be7210 "spike.map" . +_:Ncdfccbb33efc468ba76c75d24ec1610d . + . +_:Nd2f43dfbafaa407eaba1351a0e0a5941 . + "false"^^ . + "PaxDb Protein" . + "None" . + "https://rgd.mcw.edu/" . + "false"^^ . + "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms." . +_:N4165a4d0dc3a4c21bcc7a612ed1e58c1 "TGMA" . + _:N31544f1720da4e938711dca47dd66850 . + "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene." . +_:Naee6ad67a64a4d8dbc7cc569f247b349 "PO" . + _:Nf6033d07d4d94c6da1ad5b9678bb51b1 . +_:N88ff848776274409b15d1a5b496d2b0c "genepio" . +_:N236c402bbf3643b1ae7d1b93420ab344 . + _:N631d26b02e154e229a15513dc1151c2e . +_:N8fd0c0ed6e83418687a5ca2a443e2277 . +_:N029a2f9a7a674d42b0245e58f9e8c906 . + _:N62617277de30484c942f860c2417d016 . + "false"^^ . + "false"^^ . +_:N4ebbd675e76f42b2a5e85d080c5098e7 . +_:Nb9f9862e4d19401b88b992576b79ee08 "rouge" . + "1" . +_:N384705bc64894489be660c76173f17a7 . + _:N0c7528299ecb4d3e85531f2ff754b34b . + _:Nf549131f774d4d91aeb792bd31dba447 . +_:Nd8a1ec81192247ab8f26499bc922bdf2 "opb" . + "false"^^ . + "false"^^ . + "FungiDB" . + "^10.\\w{4}/\\w{10}$" . +_:Nbc68e66bc28e4fa2b3152cdfa2182137 . + _:N848215682e444edd9d30fd15b9036539 . +_:N9b9bd50e2bb84b848e0dc75aa546074d . + _:Ne80a8417b03b484ca5e9aa69d0489fad . +_:N8a76711727364db987824a7ee964a8e5 . + "^\\d+$" . + "https://identifiers.org/isni:$1" . + "false"^^ . + "Protein Structural Change Database" . + _:Nd762fd1928764113854c5e34db862e30 . +_:N4f902af567dd4f769af48d4ae56beed3 . + "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts." . + "http://dictybase.org/" . +_:N80093443863a4eca874755cb85ef4489 . + "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community." . + _:N8ea3b8969db84d00b95c4188dbde1dc9 . +_:Na99f85bb64db40f48ec36fe170f39cdd . +_:N6261bf3c7aa04edfa9f2c1dc5fc91c95 . + _:N7c384fbfb1d04a1eaa1fdda352f0a11d . +_:Ncf6027a0d37246fcb2ce39e666aed170 . + "false"^^ . +_:N05c74a7241fc4c3caa374c175cf71112 . + _:N5a6857b4e7eb4cac8810ad2c7bfa3ebe . +_:N4580d59588024cf39f91202e8dade091 . +_:N6bbb4c8c9547422d96376b33bbd7386a . + . + "https://identifiers.org/oryzabase.stage:$1" . +_:N8c99efaf30e94f6fa41c3e8a7dd4eca0 . + "PhylomeDB" . + "cjmattin@ncsu.edu" . +_:N46d6f476e520492fbf099bdacf538e9a . + _:N1baac742c9ad49eebae953193ccb4a8f . +_:N98800fd6a425485094b1fc755d02794d "dictybase.gene" . +_:N50f216c0096045db92f099db7638a9a6 "kegg.pathway" . +_:N6b72f1a1cee04a2394cb1228813c3f85 . + _:N33b5a977faf54d9fb492269b2cd9aa6e . + "https://identifiers.org/lincs.protein:$1" . +_:N2aaf26fc444543c2bce896245eec3de7 "symp" . +_:Nabad437312b2484ebf923b430ff59075 . +_:N1498a7523e6143ac9448a6e9aa05a86f "pid.pathway" . +_:Nd329b7b32ac045eb8cdf745130936e1b "sdbs" . + "^\\d{7}$" . + _:N55057d84126040e1b5f522e3575ba051 . + "paul.fabry@usherbrooke.ca" . +_:N6acd567fcba447e59b54e241305f9e00 . + "1000000" . +_:N8ecf4bd22f64462f97cfd81781346d37 . + "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols." . + _:Nf7c3d868ac454e8ba97fe2ec93ef91ab . +_:Nb429cb01cfdc4ff081febf56fc74f6df . +_:Nfff1e4ebcb7f45b9a5953f18143de8c3 . + "false"^^ . +_:Nb58e6069292b4eb7bfc22662b36536a4 "SGD.PATHWAYS" . +_:N5d3fa466a46d4effa966d51bd865aa9c . +_:Ne3c2eba9f0874b7da11bf6f883171efe . + _:N37d27cd8c451497e976fd95175cfe685 . + "The Plant Stress Ontology describes..." . + "None" . +_:N0776bdf4abaa4e0f9f0dfc2582643dde . + "https://identifiers.org/adw:$1" . + _:N5a78dc600d7749b5a093e96d02acae97 . +_:N8d574d0645de448db7992734c2644e9f "iao" . +_:N98dc1f55a303402c8e42b081b6522fb8 . +_:N90e3371da6b44d8e8a2522f93d0d0de4 "COMPULYEAST" . + _:N3de32ce7be1f4ad9ba5b693c3ffbc19f . + _:Na65323a476cd4cf9b2d6fdb5942bc4e1 . + _:N55f2ff0d284341e8b9913caf1a9b5e04 . +_:N87b0e1677b964bceb0b36ee11cd19e82 "homologene" . + _:N127521249ff5476da457f7abb1d531ff . +_:N44ba8e25fd9441028f2f5fd62bc8581d . + "https://identifiers.org/datanator.metabolite:$1" . +_:N9291e4069462478ab2bc32a3f69bd76a . +_:Nb89cec5f53ea47dba47e2b1cc5e723fd . +_:Nef4e4f1daa5a42519ee95b2f05239a15 "REX" . + "false"^^ . + "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources." . +_:N5b74197f93f04a03afa0ba71726fa26d . + "https://identifiers.org/iceberg.family:$1" . + "false"^^ . +_:Neeeefb73d6a4438188c038d826624fa6 "genprop" . +_:N536d0cdebd57448a8548e31739dd7cc6 . + "cjmungall@lbl.gov" . + "https://identifiers.org/edam:$1" . +_:N0fc217b91d324527bef5a75168c74b34 . + "https://www.ebi.ac.uk/ols/ontologies/mfomd/terms?iri=http://purl.obolibrary.org/obo/MFOMD_$1" . + "165a" . + . + "DANDI: Distributed Archives for Neurophysiology Data Integration" . + _:Nde0151d00a7d41efb4b6a3a2abb3b664 . +_:N542393045dc547798b7494d2c2b1c2d9 "NEXTDB" . + "false"^^ . + "false"^^ . + . + "https://github.com/HajoRijgersberg/OM" . + "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept" . +_:N16120e5ec53343c2861916d342a1e316 "oboInOwl" . + "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections)." . + _:N76d7fff21f574c7695358d308cf3b5ec . + "FDB002100" . +_:N1fce305b786547bba5548a009597a653 . + "https://ssbd.riken.jp/database/project/$1" . +_:N9b6e5dd4c2a243e6b2f8eec3a37bb207 . +_:N26889da119294fdb9b088f308afdcb85 . +_:N49fa65d3fcff42babbae7af9851fc241 . + "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view." . + "https://www.ebi.ac.uk/ols/ontologies/ohd/terms?iri=http://purl.obolibrary.org/obo/OHD_$1" . + _:N0e36fbde5bf04dbea8fc67a2ab4ed6ed . + . + "^\\d{7}$" . + _:N6b9a1df959aa4c40b01ff8ef0cfe133f . +_:Ndbbed642fbc547e19817ddc91f1993b7 "gabi" . + "100101" . + _:Nf86770241770422eb4e5d1786330168d . + _:Ne45351f7025c43afad1c92133ddcd5fb . +_:N3464dc6632d74f52b5bbb85aa0d12aaf "bionumbers" . +_:N826957724ab44793bf01709efcb3abde "go" . +_:Nc04d65c6d17c4aacade086e676f6ba2b "TC" . +_:Nc8c280ea5ba84f1faea720abb402c55e . + _:N436744b48d6e4173bbb56938ef649195 . +_:Nd53b4acea8b045899a61c0609d37c2a6 . + "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\\d+)|(NZ\\_[A-Z]{2,4}\\d+))(\\.\\d+)?$" . + "false"^^ . + "bpeters@lji.org" . +_:N67bc7924f2d046d2bf3656c781cb4e04 . + _:N76c7b663427943f9abc4670955b376a2 . +_:N61b9c512df0e4ce2834aab1152016871 . + "None" . + "G-Rich Sequences Database" . + "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects." . +_:N8c0779a880fa4b8c8d282950a3b188f9 . + _:Nef1081ecca67416ea668afead073e068 . + _:N2aead8e3946f44219a390b88867b390b . +_:N7d31d5a689194d8da7b2a6bb65634dee . +_:N6b7ba2bce3f14e7fa5ac785468c29b2d . +_:N23a42054bf754da186d6c11aed04410d "co_348" . +_:N04436163e681432d8234a61f0b957ce1 "DDANAT" . +_:N6b9a1df959aa4c40b01ff8ef0cfe133f "CHEBI" . + "https://identifiers.org/GSSO:$1" . + "^\\d+$" . + "false"^^ . +_:Nb4af43fc406d4536b7054b13c61d0bfc "VARIO" . + "Datanator Metabolite" . +_:N696535c8979045f78f645bbf3ae2090a "vmhmetabolite" . +_:N76e38351b635431bbb9d1fbce1995a54 . +_:N6e0737958b9f43d385ece6a6bbad8079 "RICENETDB.PROTEIN" . + _:Nb0e5d698f3634ffbaa3360e39ea64c4f . +_:N3cd0c2ec07a446f5899a1af27c494ebe "WormBase" . +_:N0d4e150e6cf14312bfc05dcf34bc7b04 "SASBDB" . +_:N18961230ca284e4397b1951cac5fcdac "PMP" . + _:N96ed0b70d7ac4f07a062964bff34cd27 . +_:Nee8839f8d1054265a59cd9a209895ce4 . + _:N6716763b145546d2b50ba627ebee5531 . + . +_:Ned21d29a8997441aa7cff593e853a6ad . +_:Na9dcc74989624a2589d1f5c4c423c142 . + _:N840f7144e5c44117b168134a42a3a988 . + "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease." . + "helpdesk@cropontology-curationtool.org" . + "NCT00222573" . +_:N3173319686db41d1beb6a6623af3f821 "chickenqtldb" . + "http://environmentontology.github.io/gaz/" . + "https://identifiers.org/exac.gene:$1" . +_:N224045c014a04fcbbad1dd50565f9147 . + "634515043" . + "https://bitbucket.org/hegroup/ogg" . +_:N1b2445c3055748458f71ee0fd4b2e751 . + "PseudoGene" . + _:N3fdb5811d37d4a9eb2666d753cb2f658 . +_:Ncd738344806e453b99fb485d8c10ad14 . + "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view." . + _:N1cb5b37356b547c7af6b19f763fa50f1 . +_:N12d0c5071f6348bda4c794c315a90c68 . + _:Nea9de07ed76a422bb828c238e7904739 . + "3771877" . + _:Nad46ffa23356460d92cd5cd943527457 . +_:N7564a1a6fa1142a898ee1118930ebc0a "gnpis" . + "false"^^ . +_:N4f17083da64e4156a05f2d24d1d19281 . +_:N4ffc227255404fe7b1c3c17aee58c7dc "bitterdb.cpd" . +_:N36d875333f7e41428c638cac00f4da72 . +_:N65b8dcb490f3427caebc8f3f01dfb1c0 . + _:Ne49cff54c6fc42f7a2c967cfbc2b4006 . + _:N37f5fac491e94c42b6adbfdf63b151b8 . +_:N69df722cca974b768f0f25eab326467f . +_:N13c2a7e397cd4f1cb0943fe22845ac75 . + "None" . +_:Nb708e6eead714542b300b23f13dbe34e . +_:Ne0e7803396544095b379c0a972c48eb3 . + . + . + "false"^^ . +_:N31dfc30729434f92afce65821c4722ef . + . +_:N31e2876877c84f76b7fe856e84a69b04 . +_:Nbc3e1ab951f844db9ad59dbb2ea058e2 . + "Food Interactions with Drugs Evidence Ontology" . +_:N3106f42356b44121a5a49b3fc9ee6124 "ccdc" . + _:Nca1d8a25db384622ac2386b38baf9fd2 . +_:N94421bdef26f4ad18f93c9df9e2e70e2 "ttd.target" . +_:N19b70b870e834ec3afc92c956683c43f . +_:N65e8379582234049b1e88ab1f073e82f . +_:Nfe777c3588ab4d45be1875b9a35dbd59 . + _:Ncbecc85381294f758f19a2d6d9303324 . +_:N8f8b9758e164488297563d218a319351 . +_:Nfd1b6c4a1059450cafb066a57c836b09 . +_:N48e434b8d5834e888630659413fd230d . + _:N355d7c0c800847ebb811230d3fc4b4c3 . +_:Nf35b27a1d543449180b4aac7e8f8c1be . + _:Nf1c99fdd0cd24b3cbe9c83fb1b0a8714 . +_:Nb875ee702fde4066a5774fe232aaaec7 . +_:N50ff1c8461eb406f98b3b83ac7375080 "PPO" . +_:N6cab9c7d976b48b9b78338ddb902c175 "ardb" . +_:N4ff4ed80fd664d078a0ea31c8175d80b "cdd" . +_:Nd3b86306ba8c4e979fedb61beac30fad . +_:Nf2ab0ee9a5a54600b37586a0132b6f7e . +_:N7ff748328add482ab247138c2b766364 . +_:N658302102dbf4549b3bba90e9a3066a9 . +_:Nfc2cf66274e6459bba5c44f45eab645f . + "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found." . + _:N660ba1abd5c04ef8af1f70ad9187b689 . + . +_:N6b9c3740830840d0bc651c798a82ddf4 . +_:N8942d9255b1c45dd82b98e686b917476 "VANDF" . + "https://www.ebi.ac.uk/ols/ontologies/atol/terms?iri=http://purl.obolibrary.org/obo/ATOL_$1" . +_:N09d018d562964490a9eb14b44120aac3 "GenBank" . +_:N9607944cca1d451cb53d0e34fefde91d . + "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number." . +_:Nc07514333578449a9c4aff4e8de23160 . + _:Ne3c2eba9f0874b7da11bf6f883171efe . +_:N02b2bff400124f3d8cc411c4ff55e9b3 . + "https://identifiers.org/mmp.fun:$1" . +_:N446050346538422aa24e6087deb42a9d . + "1829126" . +_:N4816541db8994fc08e1bcb5bab77affb . + . + _:N321a12833aa34cd3b90bb40f99dc561b . +_:N365e340e00564b1ba3ce76b90304dd0b "unimod" . + _:N8f253e8685854c17b906a7669d207d98 . +_:Nc335e7ce4c8e45d7ac4edfa85d6b6c27 "P3841" . + _:Nca53eb92dd7c4800815ff81bf72173ea . +_:Ndd2f4cfcb24b4478a7affb4068720ce6 . + "false"^^ . + "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification." . + _:N7820678ded754ff681a11948f9571834 . + "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." . + _:Nd5d9234491fd4687ac4b7b69c7b20dea . +_:N0fa9baafec8a4276865040744a9f7273 . + _:Nd7fd07de534b45e9992745b5e852ecf6 . + "https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo" . +_:N30ff736917e5422fb3692ca45785409c "cpc" . +_:N96ed0b70d7ac4f07a062964bff34cd27 "ZFIN" . + "LINCS Protein" . + "SWISS-MODEL Repository" . +_:Nc22e4a7a8667439a8de989a01f484a71 "P846" . + "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information." . +_:N95646a2e675e49b1825abb327333dd7b "ligandbox" . +_:Ne545a1af974c450a87f46019ec65e8c6 . +_:Nad37c7e18f3f4109a8c46f2d2bc01edd . + _:Nafaa018f048e4907b743bd676a4a66be . + "false"^^ . + _:Ncaad05c21c4e434ebbdba254400e7dd9 . + _:Na1bbd468397340c1b1e9c55784929395 . + . +_:N1b195d8f46a249d5ad3829fc5d30d39c "napp" . +_:N61fe46d44a0348b58a178a9d6ac02292 "dev.ga4ghdos" . + "1354581" . +_:Nedb83935194c411ab485ff06753795ef "imex" . +_:Ndb7e5fc5540c49ecb76709cf8fca9e51 . +_:N0cecf057b24044c1ac8c6054050427a2 . +_:N5ec0a2e6e91447a08f96a8135fb6c60e . + "https://www.ebi.ac.uk/ols/ontologies/fypo/terms?iri=http://purl.obolibrary.org/obo/FYPO_$1" . + "None" . + . + "https://www.worldcat.org" . + "https://identifiers.org/bigg.compartment:$1" . +_:Nb3e99a7a716f4de6909cb89333a376fb . + _:N9bf12db119ef4c78b2581e756dac52df . + "false"^^ . +_:N843d74558c2f4dafb5e0354613e11923 . + _:Nf7aa182e750f4f9ba4de28382494c883 . + "None" . + . +_:N2a26e73621444961af1cf61b3dde7155 . +_:N5e0288c4a84d4da0a04b5d03d10e6b8f "WorfDB" . + "None" . +_:N59c602ec148447768beb5586d407b2fd . + "^\\d+$" . + _:N2516fcf841de4bc5a68b8666452b05fd . +_:N791210333a40428b88537bd93ac1afec . + "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning." . + "https://www.ebi.ac.uk/ols/ontologies/pdro/terms?iri=http://purl.obolibrary.org/obo/PDRO_$1" . + "false"^^ . + "^\\d+$" . +_:N30c70cc8b1764735b0f8660584468e35 "JWS" . +_:N5eb449522ddc45bcae79e376ff6def6b "envipath" . + "YOR172W_571.0" . + . + "GeneFarm" . + "COSMIC Gene" . + "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1" . +_:Na1161b67b4e84cfc8d2eccb24120ad64 . + "smr@stowers.org" . + . +_:Nbcbdbbf26f3a4f2497cf4725f6a7809a . +_:N2748778cdf614e80a162fb795826fc47 . +_:N0a31812b3fad4f9f9f3c1f5edea9c134 . +_:N36ff76a49e9e4184afdc3a8b64d840b2 . + _:N56bc08278d364f4192fe6ce4b2103c50 . + _:N83dccb6a4ea44307bdc69eac0ab24e12 . + "false"^^ . + . + "^\\d{7}$" . + _:N4dbb1d5c927e44ef900c84c36b3f544d . +_:N3f46815f56a34b0ea2eebb347ae2172e "bto" . + "true"^^ . +_:Nfc2cf66274e6459bba5c44f45eab645f "ecyano.rule" . + "ProGlycProt" . +_:N58a41cc007c0482b9b2f6aa5f9ed9a16 . + _:Na60bc7f9c104447b8209f39eeff20392 . + _:N4f196344fb3742efa96294fcc2829d2d . +_:N3bc1c0e5312d4195962f9b22cc395f81 . + "^\\d+$" . + _:Ndcce57d2d272434a97ac4f17160965bd . + "false"^^ . +_:N2ddf05d33ac14ca6a59f557f920d7ad2 . + . +_:N30c31161f00244049c2d5f7bf2283865 . + . + _:Nee8c09b7b6e44765a1f7d15e5ff3c634 . + "false"^^ . + _:N164195cec4df48098650a1c895078b6b . +_:N30373bc4d6e04750b86d54f1364cfb56 . + "raymond@caltech.edu" . +_:Nb28bfb68df7e422694c18fd0f01471b8 "dbg2introns" . + _:N5a1fe75009504de4b46c8c61a6a61d11 . +_:Nc3ce354e14e54e24ae58d9ef8c6abf06 "funcbase.fly" . + "https://identifiers.org/seed.compound:$1" . + _:N9050a6861ceb4822adfc9440378b818d . + "ValidatorDB" . +_:Nbdd2014d1c8a47a8aa7cd4921d40f5ca "GRIN" . + _:N36b3d242eeca4ecc80248c4408cdb016 . + _:N35a1dccfaae84e46924cc885040a2c4e . + _:N8686c56490a142a18abd9fef2c0d6878 . + "Decentralized Identifier" . +_:N505e89633da94ef4b61b691e705d8477 . + "0000031" . +_:N1c7a73fad7824b50813a9cf19e08aaed "molbase" . + "false"^^ . + "^\\d+$" . + "None" . +_:N019afee8c3f8421c906f24d086bb4903 . + _:N939c2f7edf224ca3af3e1512b04e9231 . + _:N52e792f0e76a401f862a97eaef71a60f . + _:N9aefc3b2f1e04b87adce08b5cb6156ff . + _:N65b8dcb490f3427caebc8f3f01dfb1c0 . +_:N0832ad41adae406cac7e57d6393b4f1f . +_:N020abf6bfce54d76bb9366614aa89b39 . + "^\\w+$" . + "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data." . + _:N31d1258994144cc8be7654ff7a988c67 . +_:N798b0047b2604fcba86c66560a9608ca . +_:N31544f1720da4e938711dca47dd66850 "dbprobe" . +_:Ne80a8417b03b484ca5e9aa69d0489fad . +_:Ne2d4f82a471d4394a3cc3f55600d1d63 "hpscreg" . +_:Nb785409ba42747c0bb4ca39eb6218187 . +_:Nbcdf360f10c744c4b4151f6ed946e80e . +_:Na280adb305d449ba8d438864b1633114 "hgnc.genefamily" . +_:N469b76f3473447609730cca7ec847bb6 . +_:Nbe49d29a577049cd9bb1ed28db6a8cf7 "pdro" . +_:Nb83ad953ed634896a5662808d3c08c00 . +_:Ndacdbc34578e4416a9450ef060c5c81d . +_:Ncf5cea740cb041c5ab2887d99b87564b . +_:Na5341915d15c4c6c9c123117f2c134c8 . + "vladimir.n.mironov@gmail.com" . + "MedlinePlus Health Topics" . +_:N45817e3b2f2044868838df91b6c86cc9 . + . + "^SEQF\\d+$" . +_:N5f3437f3d03d46ee9a36186c0c16a717 . +_:N1ef6c9b9cf6741f0be5946d0284b9b5f . +_:N0dbb683f7a04479fa940a59732ff9e79 "kegg" . + . + "^AA\\d{4}$" . +_:Nfaad8a6c407c434f9df70f510b3f2435 . + _:N9a255964ada54c21b51418592306ac2b . + "KEGG Genes" . + _:N000df9d421ec44b4827291b1912bbbdd . +_:Nd88c3b84c9224379935c31f37d823b7d . + "false"^^ . + "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information." . +_:Nfdef520f28ca4baca722eb3c5b8da1f3 . +_:Nefd104b4ed66483b85014041abb9615b . + "1257009" . +_:N701a88fb0cb54790bec1d15af99a2384 . + "None" . + _:N7c2867d684ea49a09daeacd51b28807d . + "Interaction Network Ontology" . + _:Ncae6bc33145a4ac09e0848c94b2f7e3e . + "https://identifiers.org/biocarta.pathway:$1" . +_:N26e172894ff04af3bfda4b79688d7f12 . + . + _:Nbbebf3a88e05429faa063c858ba17dd4 . +_:Ne21c66dca39d445ba56633b5af0dc19a "oae" . +_:Nc02f37ddef8c4bc8950257f460d0aa6c . + . + _:N7a9447d649024e51b306637bad32c4a5 . + "ZINC1084" . + _:N61883989ec534272ab702ac093b451bd . + _:N240524b466d0432682478d146f4cf663 . +_:N9be83a99530440689dc20222cc3137d3 . + . + . +_:Nf8667e22d6184eda8d4d09a197efa5cb . +_:N0f35ee7982034b658a0e32b16ac8a16e . + "^\\d{7}$" . +_:N0a9b0d406fdc46ef86915ca1167ac085 . +_:N3099ae174b3e47068c0c77789abd0ed1 . + _:N8c193499523840e895defc956b3bf4a2 . +_:N4d2937a770d74a058e4c5f83f79004b4 "KEGG_PATHWAY" . +_:Nb516f903d44b4c8cb14ebff25e8db193 . + _:Nf4559e715dc54311870651d5701fac2c . +_:Ncae1a398fccb457ba220d527cb7dc78d . +_:Nac7202322b6642e88ef206fa3373049d . +_:N4f196344fb3742efa96294fcc2829d2d . +_:Ne3c92ffcb8df480ea493e70537bcaa46 . +_:N240524b466d0432682478d146f4cf663 . +_:Nef961de87487406f8789c84d0cd7e574 . + . +_:Ne708ff73125e44b9bfae9022cffaf1d0 . + "true"^^ . + "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram." . + . + _:Na0bdfa4a175f44fa9e1fb8952f242f54 . + "None" . + _:N8ade180670884c63abca270e77476d2b . +_:Na5e74422172a43e4bfa95cbf01b4d0eb . + "neXtProt family" . +_:N7f235672351a4894b6417140f19edbe0 "GTOPDB" . + _:Ne93d354b97cd4eb2985480da65284f40 . + "false"^^ . +_:Nf86770241770422eb4e5d1786330168d . +_:N859680eb65df498293fb9c6596e4dc1f . + _:N926a938d00684749813761380882caae . + "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA." . +_:N9b6070b1a9fe4448976b74eb6983b8d0 . +_:N5897728f36b14220937df223f31ac564 . + "Bioregistry" . + "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$" . +_:N152c31a785de4d839239b878070dc168 . + "BugBase Protocol" . +_:N84b38c97f16f4cb1a422d8a2b724b769 "PRIDE.PROJECT" . + . +_:N46b6acfcf7ac4cebb631d47f08b48151 "imgt.hla" . + _:N38e64c41920e4159ab87e0bc28a1a430 . +_:Naa10a171a2014a8b90a6efa2f30f2938 "PSI-MOD" . +_:N380156fbd7f1486fa12c9dd8bf92a69e "depod" . +_:N86b64e5764044507b31fa88542c1b2b7 . + "HOMD Sequence Metainformation" . +_:N7e32e1ed31af4026b082674d7e02f0fe . +_:N890e05629e82418daae016ee5930abcf "oryzabase.reference" . + "None" . + . +_:N8d81152bbfa24c91b4752cb8a547e227 . +_:Ncaf94c6a021a443fad801167c68d752d "bigg.compartment" . + "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules." . + "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments." . +_:N5764acd03d954329b54ee5f1b40e9807 "P699" . +_:N8acd5f30c38b40e284415df8c8b9fdec . +_:N4570892026054af997ebc5af8dea465e . +_:Ne5d04b8e6e5440d6bc6ffcd13249ade7 . +_:Ncaab82f9bf5f4d059a23af71cc2498d4 . +_:Nd3cf6c2f04f94b15bd4d12fc6ddf55b8 . +_:N1d02e22c5de948cba0c0bb2295e6d998 . + _:Ne0414767a77d4517ae56839c9b744329 . +_:N84335ac5b5f54980ae1bcccfff340f6b . + "None" . + "ISCW007415" . + "false"^^ . + "baeverma@jcvi.org" . +_:N7ec6e0348ad640bf8278c48eb44aa651 "bspo" . + "1455" . +_:N44637c91b29845e2884b97712eefbd70 . +_:Ndcc44a474bfa4de4ae724df3ef6dec24 . + _:Nd6c0193ccadf4addbe15603e1f4b0eb9 . + "ABE-0009634" . +_:Na4d9b892b27f4ed7a5a89de7106b6063 "PubChem_Substance" . + "None" . +_:N45a0727b93e14ca68d98e0daf3a3870d . +_:N703970fb68b14074a2a9ec741c0ba37b . +_:N5d636c0fef24467994c25a000edc8541 . +_:Nd930711a60094fd9a11fbea0755928c6 . +_:Ncf5cea740cb041c5ab2887d99b87564b "img.gene" . +_:N22965f4568914cfebac7b43b7c81c104 "FAO" . +_:N4c014e5fe26f4780bb66c88bd65e921c "PeptideAtlas" . +_:N4c1498c4bdf04805be8ea6d509a52570 "zfin" . + "https://identifiers.org/bacmap.map:$1" . + _:N5a95d797771f46638265f8141b780d04 . +_:N8df5f0e08e894cfc9805fabefaa3faf1 . + . +_:Nd4dcb29e9b044e05a0dcea2a2e46ede1 . + . +_:N254320dde07542bd8f5f44f41fbd180f . + _:Nbdad26c0005b448793cb1f32ce4b2c05 . + "None" . + _:N861fdc6bafd7478e8ecc9bc9f1bc4a8a . + . +_:Ncf98a29ad9094b7d8d5fb1d38da2d299 . +_:Nfd99f0fe8eba4fd3b898d95bf4e80bf2 . + "false"^^ . + "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles" . + "^\\d+$" . +_:Nb458d227e2304499b8e84fe01d9aa1b1 . + "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made." . + . + "https://identifiers.org/phylomedb:$1" . + "false"^^ . + "^\\d+$" . +_:N21be85f7775846c4913812042440c067 . + "^\\d+$" . +_:N5e65a4c30d8642e584d9faa9eb51194d "asap" . +_:Na75df49a0fcf4e98ab31b3f9a44e80f4 "cameo" . +_:N9b9bd50e2bb84b848e0dc75aa546074d . +_:N37f5fac491e94c42b6adbfdf63b151b8 . +_:N3b3e8788c5ee4e4eafa9d6fef7b80caf . +_:Nca78c565bf754c9db435f2aedb173162 . +_:N21b125f1ad14411087a9668d58e59426 "dpv" . + "https://www.ebi.ac.uk/ols/ontologies/exo/terms?iri=http://purl.obolibrary.org/obo/EXO_$1" . + "iECABU_c1320" . +_:N83b18efb1f7f47edb3bd167d8a1908ad . +_:Na3e977ac3afa422da18a57fd817832e3 . + . +_:Nb70186fe0e4a4c7395f0c3d041810346 . +_:Nafaa018f048e4907b743bd676a4a66be . + "false"^^ . + "miRNA Target Prediction at EMBL" . +_:N7a54e1d09fa2401fb2117271fbe5bc3e . + "GDS1234" . +_:Nebdaa3e9a78f43faa6879f06f9b66aa6 . +_:N97ae41bb81904b36bcec5eb04da99201 . +_:Nf5dca0c53a32426ba5624f5432cd9803 . +_:Ne189ebbf25db421f9338ed42ad1b2998 . +_:N77916549a55a4a2ab7e9c8bb34d45c7b "ZP" . +_:N015713ab9c334a90809010d27ef10169 . + "MarDB includes all sequenced marine microbial genomes regardless of level of completeness." . +_:Ne288f2e229fa44aba7226f7c4adc7f60 "ido" . + "Biotin_biosynthesis" . + _:N4efac9c002d94966ae0029abce0053c0 . + "^[A-Za-z0-9-]+$" . + _:N2d28fd2bdb094b6886811234ea9032a5 . + "9606117" . +_:N88b207513d2b44629ef4f83563f92478 "cdd" . +_:N72c36336b67f40fe8797ce2f926cb00d "cdao" . +_:N478f4c6c28aa44edb6963961c029cf51 "hancestro" . +_:N03f6c58ce9dc4fd1b16763e62738fd9b "MGI" . + "chebi" . +_:N5a3d9157764c4c50860bf960aec94d1c . + "None" . +_:Nf9033b14674044899a9db6707d2c2dd8 "biolink" . +_:N600e889aea3f49ffa9424038f19d0e8f . +_:N4c1498c4bdf04805be8ea6d509a52570 . + "false"^^ . +_:N114bf2184337497387eaab666666d33f "biocarta.pathway" . +_:Nbbebf3a88e05429faa063c858ba17dd4 "idocovid19" . + "http://ensembl.org/glossary" . +_:N5e32f4a08c124d7aac9ac8fe94f4c3d9 . +_:N178f5e6c3d0d44678b64e58af14356b4 . + "false"^^ . +_:N8758777af13d4381bbc52f376fe3a4cc . + . + "batchelorc@rsc.org" . + _:Nd97d18aabab949708189cec6a5e385f0 . + _:N85c43a1bb5664bfab6a7640a3adea608 . +_:Nd04d0d87761c4c4181a5b3d58ebaf355 . +_:Na4b3a793e94b42968ca76d3f8e04e0b8 . + _:Nb9ae12c56daf4929b8056fed7c64884d . +_:Ncf9071a20e0e41a3af87946672920bf6 "edam" . +_:N4c5bc540b4bf4dd48674e6c6d2bad1c8 "signaling-gateway" . +_:N86c1485056024d7396547a794cddea17 . +_:N5026165633ee40a6b233c78a6eb00581 . + "^\\d+$" . + "false"^^ . +_:Na647065ea51f4a0eab7eab047f150d01 "GLIDA.GPCR" . + _:N44072a7f5e594d91890a4047658ee905 . + "https://github.com/ICO-ontology/ICO" . +_:Nf8667e22d6184eda8d4d09a197efa5cb . + "https://identifiers.org/mgnify.samp:$1" . +_:N008218aad4e14a4998886befe9aaffb7 "EXO" . +_:N0eb55ec4396448b3b6334e76e6f0b1af "BIRNLEX" . + _:N3c9fdf1a547449adb48d4d8c4182c772 . + _:Nedbbcf0b1389456fbc914f3969c52e4d . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" . +_:Nf68fbf715ea143e39cc54c45dc393a25 "IUPHAR.FAMILY" . + "None" . + "false"^^ . + "https://github.com/obophenotype/mouse-anatomy-ontology" . +_:N1f01c0ef875a4b429f6431c46b99bf01 . +_:Nd66811e5c0ce405f80e26845a04c7464 "ddanat" . + . +_:N5d6c16ea970344718a391d7540ba7317 . +_:N9b6e5dd4c2a243e6b2f8eec3a37bb207 . + "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology." . + _:Nd5df0329d19e499c9f02224689a11aa2 . + "ClinVar Record" . +_:N9c9fb0ab41b74e778166b044205c95a2 . + "http://www.genome.jp/kegg/pathway.html" . +_:N63f52e74a8b44e8da4b99cde6742d89c . + . +_:Nde1a34804050413faa027afc9020a051 . +_:N62c29c8160aa46b0a3faec728ce481d8 "asin" . +_:Neaf560210b5040838a0c1de8526b4341 . + "janna.hastings@gmail.com" . +_:Nb82b01fb16bb46749b8023e2cb55a3f7 . +_:Nc1255560ac2b4bf8843037f1a0e5d18c . +_:N72c36336b67f40fe8797ce2f926cb00d . + _:Ndd68281b550e42a0aa290f072baef954 . +_:N30ff736917e5422fb3692ca45785409c . + _:N95646a2e675e49b1825abb327333dd7b . + "https://identifiers.org/myco.smeg:$1" . +_:N46ebb7d5e4fa414d860a094fe0a7ea16 . + "^\\d{7}$" . +_:N6b7ba2bce3f14e7fa5ac785468c29b2d . +_:Nd943c937207d44e88a8a4639d86a411f . + _:N138b7930fe4d4312b987c113045bf374 . +_:Nbf5387235ae6425796f549b9f0dd485f . + "^[A-Za-z0-9\\_]*$" . +_:N0ad5f03fdf8b49caae82472cdff34b9c "cro" . +_:N63fee6d2ddc3449f88bea29553a96cce . +_:N76e38351b635431bbb9d1fbce1995a54 . + "false"^^ . + _:N13e9ce673dd44009bdebb01de73c1609 . + "^\\d{3}$" . + "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees." . + _:Nbf5387235ae6425796f549b9f0dd485f . + _:N6ac2eebe4b21400da1b5973cd7cbd4c4 . + "https://identifiers.org/pfam:$1" . + "None" . + _:N213b00a3151341df81813d4dbfaf3cca . +_:N94f05aac83ca4ad28bd56ce6349e4fae . + "http://www.w3.org/ns/oa" . +_:N7587e5d1dd104a5ab60d3d3ab253006a . + _:N11c317245c0b429d94b1e0d55cfe3551 . +_:N53627565aee547febdccf3c44b09694f . + "false"^^ . + "^TF\\w+$" . + "rateRule" . + "probonto.dev@gmail.com" . + . +_:Nfef75cdacff14b1ea81f7c42f86bc838 . + "None" . + _:N3d3049473b1e41c998ee2acbef8b5ab8 . +_:N1894dc0ed22e4b8794222b29a3ec45b1 . +_:N5a1ca115ce0347669030c5f631f04de3 . + _:N8b19bd4efd2b4c459beeea39c1cbec2c . + "false"^^ . +_:N242ff853929243fe8af42e112dc95de6 "flopo" . +_:N624b04e6eb184c82b91c74875912e9cd . +_:Nd1792c902ef14e6380eb65dede96e971 . +_:Nbc89a397dd4349ce8b52d1537e9d42e4 . +_:Nb1ae02a6ce014ecb8fa7ba49e0affd28 . +_:N5cbd0843365648eca21fb8447aa00087 "IDOMAL" . +_:N6fc67fd427474a8e808b7592459cd108 "co_325" . +_:N7fa67ed4257b4cccbae45e610131cb80 "PANTHER.PATHWAY" . + "https://oborel.github.io/" . + "1000" . +_:N9607944cca1d451cb53d0e34fefde91d "transyt" . + "None" . + . +_:N660e089d909c4ba69cc9184e8acf4dc8 . + "^C\\d+$" . + . +_:N7c62834e9e86429a9e0459bba3434bd2 "pharmgkb.drug" . +_:Ne61c31f0777c487cb961657663152195 . +_:N8acd5f30c38b40e284415df8c8b9fdec "RESID" . + "https://omim.org/" . +_:Na006aa5f3d0340069b474ff458e170f7 "PROTCLUSTDB" . + "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein." . + "Ligand-Gated Ion Channel database" . +_:N98c8e2020b834bc5b07ece4655137ad5 "neuromorpho" . + "Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019" . +_:N31e2876877c84f76b7fe856e84a69b04 . +_:Nd850a9f26d9b450da83d7b7eb36c6b46 . + _:Ndc4d598cd6da419c8cb5471a1de4cd6a . + "0002902" . + _:N025e241dae594e7f8279a4e0c45a00c8 . + _:N19edf8a029664b37b83b24d939f1b9e4 . + "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands." . + "None" . + "false"^^ . + _:N9f9e5e361adc4e17accb95bbb47e7196 . +_:N6f29b2fe8af5477fba9a3fc73b5324a4 . + _:Nd008e9bd65a14f82b505a7d6f262201d . + _:N5f293e52ff4a4e00b2883ee52edbd429 . + _:Ne7c42210ca994460ba3dacc1c36aec92 . +_:Nad122a58924f48b5bf192414cba0d2d9 . + "false"^^ . + _:Na4f01d912e364f01b7f8c7dd820f3e1b . +_:N711480100f0345e1a57dfc0e8943ea53 . + "Software ontology" . + "^EB\\d+$" . + _:Nfab8239ec9044300bbb6b5d77f60f4a5 . +_:N10cede9fc93e4149a111c779ee7f4af3 "pgx" . + _:N60a7f0e71cb645b1ad9176fe2cebf771 . + "4238" . +_:N19c51fa3ed6b42c2b2ff855e45181dde "genefarm" . +_:Nf58b7ecd91f144f0ac534ed175191d80 . + "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries." . + "false"^^ . +_:N91b61392e0464dc48453a09c55fc3d29 . +_:Nfc2cf66274e6459bba5c44f45eab645f . +_:Nd264de8f58274576890249203bb87e26 . + "8639.1" . + "https://identifiers.org/DID:$1" . + "Rhea, the Annotated Reactions Database" . + "None" . +_:Na76f7e7ba8004083a22786074dce1e7e . + _:Ne856f73d66c542d0ad471c18c1468052 . +_:N1df975d11dda4597b6a52b8655851ad2 . +_:N4113d057a87f4454846a017a11236278 "SAO" . + _:N3d98eb2ea084445b94de07f5894f89d5 . +_:N2b2fb1fb630f4aee94ddb6ca1ce70588 "VHOG" . + "sjwang@mcw.edu" . + "None" . + . +_:Ne295782a27d542cc9f96fa0f7c4ab7e9 . +_:N236f3925dab64a23b7d47fb4df870d9f "bacmap.biog" . + "van_slyke@zfin.org" . +_:N26e172894ff04af3bfda4b79688d7f12 "uniprot.isoform" . +_:Nd56898ea16cf4568b61bd43a80ccec71 . + _:N67bfcf5981784b3e9abbae52e713a3fa . +_:Ndd2f4cfcb24b4478a7affb4068720ce6 . +_:N7d91c9d8b77f4506a09b6f999f6388a9 . + "false"^^ . +_:N5d3e54ee9275493eb281ccf3bb801037 . +_:N79a616c455804ac59e4ef20dac34ba8d . + "None" . +_:N65e3223d2977407b892f41e3a94709cd . + _:N5e1b98bc344f461ba19d489cfe227335 . +_:N8f253e8685854c17b906a7669d207d98 . +_:N83b18efb1f7f47edb3bd167d8a1908ad "mamo" . + _:N1d2eacc818094384b0c873f04decc7bb . +_:N8bb4b517eff642769334931eedc89a0d "gnpis" . +_:Nd81bb6e0a0924d93a87113622371b621 "WB-BT" . +_:N6e06fbecbb8b45838d482313330b93bc . +_:N33caaa21e4004b489216baa837dfa8d3 "DrugCentral" . + "GPST000024" . +_:N4796522668eb4124aedaa60b2086b711 "chemspider" . +_:Ne37dbf4413fc4ea2b4f91c7d2a033ac4 "P2062" . + "https://sorgerlab.github.io/famplex/$1" . +_:Nbe9672f17377416c949e5507f66538a9 . +_:N39f1cd0adaa9465b9724cf11629ff8cf "biomaps" . +_:N50b4578135e541599ab0fd660b003eb9 . +_:N8d8de026f9cd404c8c3e4894b9f890ae . +_:N9e3328d4ee5e4edda7e54d688de69a31 . + "http://www.viprbrc.org/brc/home.do?decorator=vipr" . + . + "None" . +_:N5f60c22bfee94d1290367157e65d7d96 "UniProtKB" . + "false"^^ . + _:N120a35aff4544c16a603b8a8cece8a76 . + "^SBO:\\d{7}$" . +_:Nf5bf8136ffe7461d95e6a28c86ad0ee5 . + "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components." . + . +_:Nbff79f3a31024f4abc7c5f2ff8438091 . +_:N8a76711727364db987824a7ee964a8e5 . +_:N05c7cefb36324d4c8a303c3c722aef09 . + _:N1d4a248ceaa24e83a6d9d3a98c492357 . + _:Nadb66795053642739f6ad422f4d5d1ff . + _:Nec1c6d13a5f64547b65e854ba171d8cc . +_:Ndb7e5fc5540c49ecb76709cf8fca9e51 . + "Orthology Ontology" . + "https://www.maizegdb.org/" . + _:Nce2d12a386224a2f831cbba54672321d . + "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments." . + "false"^^ . +_:N9664a7d6ef954190b1c77e2ac3044605 . +_:N994b14bff6c74c34993af78f7329bf1c . + "None" . + "The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it." . + _:N81ce6a32173749dcbe8191f8a243160e . +_:Nca1feea8a17d4634be588310f37d4c7a "PANTHER" . +_:N1acf114c89cb4abe803f870e8b979bca . +_:N4b9c015ef7c8401e8448a715b201ce6b "dommino" . + . + . + "0001" . + "http://biohackathon.org/resource/faldo#$1" . +_:N35f4354a663a4f49ada249323642d768 . + "false"^^ . + "https://identifiers.org/umls:$1" . +_:Ne3abc5638c5346ab861f9862c32c36f0 . + "^MIR:\\d{8}$" . + "^D\\d+$" . +_:N3e4cdc36d049458f8cce52cdd4a20c78 "biosystems" . + _:N19159d206c124ea3b5a68f64e47bd6b5 . +_:Nf3136ccec9b04c91bf969e25e2f67994 "gwascentral.marker" . +_:Nca53eb92dd7c4800815ff81bf72173ea . + . +_:N013bb45c91c94c44b70855ab68523acf . +_:Nf4a90a0c4bb545dcbfed5eb502003388 "NOMEN" . +_:Neeb938500ed2466ea60aef8e20805781 . +_:Neeb212598b644712aba55ef96e4c3480 . +_:Nedc1b178faed4ec680b8e4f68628aac1 . + "^swh:[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$" . +_:N3e34e079a5274b909682181fca951e57 . + "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them." . + _:N55358003352e42f4b0440ff38c0d23ab . + "https://identifiers.org/erv:$1" . + "ModelDB" . +_:Nef49ba06e02541adae75ca5dca956a24 . +_:N3997abfb2d2a4f0a89da2ff446f99886 . +_:N7587e5d1dd104a5ab60d3d3ab253006a . + _:N1fd56e1e568642729a455ce2118ea0ac . +_:Nc53ff96b4cf947bca49b8e83914d9bdc . +_:Ne46307d4457d4a6caf0529b102ede6bf . + _:N0dce48583ed640b8a0d4f37edf3b2134 . + _:N7f9fee758f5d4e23841b7cf61492dfa2 . + _:Nc90e9b135bed424a8421c3e24628d8ab . + "false"^^ . +_:N23d46f733fb44683bbada310dc68e00e . +_:N83f18a32ca93429b9bc64a20b9de5b69 . +_:N1cdc3d391f934bac8d4ea029b3ddfcb0 "tigrfam" . +_:N5ec2840aa17a40698f6bc2d3dc490408 "AOP.STRESSOR" . +_:N6bd7246bc7d8426188033448e5dd568b . +_:N728a5511f3124f91996843d10a0616d4 . +_:N3f22814277af42608b5fae3d6b69b157 . + "https://github.com/futres/fovt" . + _:Nf8512b7ad2df4b3badedea9b45cdb572 . +_:N2a808f990d2248fe80b94d63c612bd9e "mmp.db" . + "https://identifiers.org/pharmgkb.pathways:$1" . + "https://identifiers.org/phytozome.locus:$1" . +_:N820269b40e62466faecbbca02b104ccf . +_:Ne2d4f82a471d4394a3cc3f55600d1d63 . +_:N79e05f406b514aad900187fd228270a9 "dragondb.allele" . + "false"^^ . +_:Nf22149e6330a47abb5ba82bf1a617855 . + _:Na07de80a99aa447eb45fe60ce3ac2625 . +_:N5e125f21b43944f6baf8616e1efb41dd . +_:N11274d1d2fd94996838431625ee3c127 "rexo" . + "None" . +_:Ndf629b36a2554fff9c907e08249a5b56 . + . + _:N8b795d19992b4ab0a8fe7f92907a10e4 . + _:N3984ebda21304b25b6aeed3951b12943 . + "None" . + "http://purl.obolibrary.org/obo/idomal.obo" . +_:Ndacdbc34578e4416a9450ef060c5c81d . + "false"^^ . + . + _:Nc0710d8f93504fd1a779cf43b5799797 . +_:Nc3ce354e14e54e24ae58d9ef8c6abf06 . + "false"^^ . + "Hepatitis C Virus Database" . +_:Na006aa5f3d0340069b474ff458e170f7 . +_:N55340fb273184a1c9634d7feaa41b491 . + "None" . +_:Nb2918255b714408899a810d2999b4d1d . + "Human Unidentified Gene-Encoded" . + "ocid:[0-9]{12}" . + "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1" . + _:N18ddfd1aff814021987ced35a12834e5 . + "false"^^ . + "false"^^ . + "Panorama Public" . +_:N4bc01410d8de4f83884ad79b4c8520b9 . +_:N516e407347ae4749ab2231b04742eb04 . +_:N4feb3d3c57e54db182fac3d8c17a93a6 "viaf" . + . +_:N0eb55ec4396448b3b6334e76e6f0b1af . +_:N46add195817a49598aaedcaed4274071 . + _:N7ec6e0348ad640bf8278c48eb44aa651 . + "https://github.com/obophenotype/xenopus-phenotype-ontology" . +_:Nd6cb0bb3c3de40c09d4c0327f8996b60 . + _:N4c97ac86a14442b389378ce92527dd0e . + "None" . + "http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1" . +_:Ne2ff16c0e2034430ad35a612dccd7df2 . + "http://www.narcis.nl" . + "http://soybase.org" . + "^\\w+$" . +_:N24eca749706f4c7e8468f5ceb566db37 . +_:N77afe172bc9f4518b3682b33aca0a139 "tair.locus" . +_:N90ae0a0b9295419987325b82d7a0f302 . +_:Nc989b1f549a948b5bc1bc3b1d85f57a6 . + "^\\d+(\\w+)?$" . + "miRNEST" . +_:Nae9e38495d444c23ae6b635fdd549999 . + "https://www.ebi.ac.uk/ols/ontologies/bco/terms?iri=http://purl.obolibrary.org/obo/BCO_$1" . + _:Ncf98a29ad9094b7d8d5fb1d38da2d299 . + "Ontology of Organizational Structures of Trauma centers and Trauma systems" . +_:Na981c06ee6cf4fdb8fce35bec170eb2a "SUBTIWIKI" . +_:Nc23aa18cba354cd0b8e67c7b6c6c83b2 . + "https://www.uniprot.org/unirule/$1" . + "https://identifiers.org/gmd.analyte:$1" . + "http://en.wikipedia.org/" . +_:N491f8e1938c5424e9065aaaa820146ab "arraymap" . + "Social Insect Behavior Ontology" . + _:Ne2cc1b8f475a4321ba152f923ba7d828 . +_:Ne5abbadd1e1146e4b053d1f85d156dd5 . +_:Ne3c92ffcb8df480ea493e70537bcaa46 . +_:N240524b466d0432682478d146f4cf663 . +_:N5d5b5652f2234437bf8cedfd310b4c51 "EnsemblFungi" . +_:N237fa065f36643309d5f2247a3871a45 . +_:Na5c6f621c5b74d9db3920b720aab4b32 . + "false"^^ . +_:N801fe1b6fe7749e6ac97035baaef3f7c . +_:N2ff141dd4f1143e58a0427939ef4235e . + "false"^^ . + "None" . + _:N86a33aab224f4bfc8428c1107a64bdb7 . +_:N71fae18547fc4dbb8391397f7162df90 . +_:Neab770d14ead4d9daac0697903df97bf . +_:N0d77b167161240d098f55b5f1bf7ae4a . + _:Nbf9b56f0b470423f8dcf1afc9daac3cf . +_:N7be786ea70a241c1bf175ac3166cef23 . +_:N0f338ff81db24e72a3707176351ba4ec "OGSF" . +_:N889f340812924d4b9fc7651c93ab348c "hovergen" . +_:N3eded30ccd064d07b3434f3f5ba0cd19 . + _:N957da5dfdf2640708c01dd56fb827342 . +_:Nf801b1d6f03d4d47bdeb3e63822756c8 . +_:N1c7a73fad7824b50813a9cf19e08aaed . + "Phenoscape Publication" . + "false"^^ . +_:N74c2287c8342434ca6f0e3af183b1f62 "ORPHANET.ORDO" . + "^\\d{7}$" . + "false"^^ . +_:N8b92803175b54ee8b8098fcc90c831c4 . + _:N8495fc8b8bf64845bbdef28e68abae40 . +_:Nfa701f51200f40dca72e6f6f8d34bd4f . + _:Nf82c08ebb61a4b0c8042102cd01a2e99 . + _:N10cede9fc93e4149a111c779ee7f4af3 . + "101" . + "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases." . + "http://planteome.org/" . +_:N534fba2da0324761a73c3c7d219bfd1d "UMLS" . +_:Nf3cec00c84ff44138980aba811d9d9e4 . +_:N6787034b7b734a298703d2c79ab3d6a8 . + "false"^^ . +_:N84cd67bde87a436291184ca53db79a64 . + "NASA GeneLab" . + "Dataset" . + _:N3d51ddc8573f444c9c4f1d882a811b7d . + "None" . + _:N6477a030f93d43708c3d17187cfeb44f . +_:Nd88c3b84c9224379935c31f37d823b7d "GAZ" . +_:Nb415e3f46a784bd3a81f5790298424b6 . + _:N862eeecd326a42878fe01b828d743f1a . + "false"^^ . +_:N8d81152bbfa24c91b4752cb8a547e227 . +_:Nf0c42a4c56bc462a81021e592631db44 . + "^[A-Za-z0-9]+$" . + _:N8193de38a54d4827be41481ddca10a61 . + "false"^^ . +_:N0911246b45e64e239992abce57091627 . +_:Nac5fc55ead0b4b52a4ba5634116a1adc . +_:N1c65b69b1d754336afb15ff111461c0e . + "Ontology of RNA Sequencing" . +_:N6aa6fd3b42bd4dbfb55bf279cc23afb1 . +_:Nb35c7d4b4bac431f9026211d8ac18eeb . +_:N301e4070a3d942b1b4e35d4ed95d8170 "vfdb.gene" . + "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results." . +_:N7f235672351a4894b6417140f19edbe0 . + "helpdesk@cropontology-curationtool.org" . +_:N6ac2eebe4b21400da1b5973cd7cbd4c4 . +_:N520122c3a7054fae86addd4f5c2da621 "BIOMD" . +_:N5267a5b556954ba8b4d8c1d54b9eccd5 . + . + "Human Proteome Map Peptide" . +_:Nc2ebbc050dc14e04804c1b51c127eaaa . +_:N19edf8a029664b37b83b24d939f1b9e4 "otl" . +_:Nf70a267aad174f9f8dfe8f659f5620dd . +_:Nfe0d784c5d4c4295928021e68388dcbd . + _:N0d77b167161240d098f55b5f1bf7ae4a . +_:Nefaedaf016264018aee2ccfe447ad0c6 . +_:Nca6b27c8755e4fceb590f12deaba6617 "cl" . + "false"^^ . +_:Nb41f2e48d2e14d31b830d0bbb18385d7 . + "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation." . + . + "https://www.ebi.ac.uk/ols/ontologies/ensemblglossary/terms?iri=http://purl.obolibrary.org/obo/ENSEMBLGLOSSARY_$1" . + "vasilevs@ohsu.edu" . + "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$" . + "helpdesk@cropontology-curationtool.org" . +_:Nb88b2c5086d948c8b6f665cca4912329 . +_:N96c387e66616436d9fe1ec9105fbc30f "multicellds.cell_line" . + "https://identifiers.org/bgee.organ:$1" . +_:N9f9e5e361adc4e17accb95bbb47e7196 . +_:N9ad5bab90521489eb2f67ab0f615d5ed . +_:Na3e977ac3afa422da18a57fd817832e3 "mmp.cat" . + "https://www.ebi.ac.uk/ols/ontologies/phi/terms?iri=http://purl.obolibrary.org/obo/PHI_$1" . + "^Os\\S+g\\d{7}$" . +_:N9209fa1bf1f54d978b038d3ecf853153 "SEED" . +_:N337ed5c2151d44a4a56c1448b6071a7b . + . + "C. elegans ORFeome cloning project" . + . +_:N4e84010357514ad0ad182a41eb75e04e . +_:Nac7202322b6642e88ef206fa3373049d "vbrc" . +_:Ned37ed6454594a9881ab631a56a3e010 . +_:Ne32aed7f42574597b34bb9d6bcca3adf "SPLASH" . + "50943" . +_:N3b1f353c3e03402aa0ac8cb4c96dc153 . +_:Nfdcf2f6a6be5499d83c9e52b88254120 . + . +_:N02a62e70e86540aa8ae20b21a10a5ecd . + _:N4504e5cd520a46f08688bf447a0a215c . +_:N964777c09c55406392372aaa9f69beb6 . +_:Ne2dac13471f74033bd061f46b2a150cb "issn" . + "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions." . +_:N7c77574c1a274acca091bb916218fe28 . + _:N8a80f4bd8cce4c7e802ef5b81688b9ac . +_:N5baa1db724c543b689cd650c476cb2f5 . +_:Nc141bd9e57c44d3c9cbfbf8541a77092 "bigg.model" . + "https://identifiers.org/hogenom:$1" . +_:N24c2f60c631e45f1af4c4e0fb80ec0f0 "bfo" . +_:N4f196344fb3742efa96294fcc2829d2d "P593" . + "^\\d+$" . +_:N7820932cdcab43ce847935d3dc8bff59 "ORPHA" . +_:N1ba7e9b994834ff9abe44f7672ce3e8f . + _:N36d875333f7e41428c638cac00f4da72 . + "FxnI151FMs" . +_:N9d42c58ecfeb4fb088a60a5f4086e26e . +_:N40809d3dd3f7452c9331a978ec2cc42e . + _:N51a763dfc61a469790f09a5bfce0216d . + _:N1f05460b89ed4daa9a63d6ea28e58ae3 . +_:Nb381c8f829104436a233803b4f678538 . + "false"^^ . +_:N801fe1b6fe7749e6ac97035baaef3f7c "FUNCBASE.HUMAN" . + "None" . + "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons." . +_:N2d86bee4ce134d5bbff8f57251304e66 . + _:Nce49de24f5db4abca9c19c7eab750f49 . +_:N1ebdf534165545cb91f54beee93ed9f5 "co_327" . +_:Ndaf5ba0656ac494bbb57c71dcb090221 "eco" . +_:Ne259d21f19a6401fa31720f2a506f657 . + _:Ndcdc5bf451b346409bdc8b16a8085630 . + "https://www.ebi.ac.uk/ols/ontologies/ddanat/terms?iri=http://purl.obolibrary.org/obo/DDANAT_$1" . +_:N13423f5ab2ac4318bba91218e3efafd3 . +_:N9c55effd3a384cf3a938f05e0e18f398 . +_:N55fa236fed974add9ed021eb9e9b977d . +_:Nbc852d0a0e4d4a5e950aad5f4f5f6dd9 "MIR" . + "Animal Genome Cattle QTL" . +_:N4c1498c4bdf04805be8ea6d509a52570 . + "RYYVLZVUVIJVGH-UHFFFAOYSA-N" . + "https://identifiers.org/efo:$1" . + . + "None" . + "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces" . + "false"^^ . + "None" . +_:N67d2c4575be7452884a26b5fb1a343f3 . + "false"^^ . + "http://purl.obolibrary.org/obo/rex.owl" . +_:Nc2bb0c4f3f10404298d7c2d9b38d709c . +_:Nd7e2c1828ceb4748af084ef363732e1b . +_:N115a07370ba7419bbb8df49a636d0b96 . + "HIT000195363" . +_:N867c315f547149a18b8e3768d1b6b2d5 "DrugBank" . +_:Nf0b2b3668f1a4cd9b2665ef3cc3e4af3 . +_:Ndfa05b9d1b5b414db76e746f57e4fe28 . +_:N58b533132874457bad1ced712d51fcf8 . + "false"^^ . + "https://github.com/carrineblank/MicrO" . + _:Nfd1a6e0b22d64f11ab9b4a212ca4b82e . + "janna.hastings@gmail.com" . + "^\\d+$" . +_:N23a42054bf754da186d6c11aed04410d . +_:N945b9472bcf34f6b8d9500b340c0b5e2 "VT" . +_:Nbee52ce82174462c8e862d934ba961c0 . + "false"^^ . + _:Nb9b3a9f8128c403a85568bbe3a23dbcd . +_:N4c2661c39dd64bcca13c951a8ff9b9d4 "MMO" . +_:Ndfb8b0672c6948b08f514fe7cde4901f "FLYBASE" . + "https://identifiers.org/jaxmice:$1" . + _:N141d67e9672b4a968a7dd49e0b4b4368 . + _:N771e1433af004242ba317966eb61c1a6 . + "https://www.ebi.ac.uk/ols/ontologies/bspo/terms?iri=http://purl.obolibrary.org/obo/BSPO_$1" . + "Taxonomic rank vocabulary" . + _:N9f0f6bf7559c408b832f5b2544f02df1 . +_:N5c5f8928bd43420dbdec197584fcac95 . + _:N4ed56ed51fd54850a5ee138a76be959d . +_:N878adb9451f5450e859da6fe14955ca3 . +_:N77f906046c05437a8f60984a797c29ec "KEGG.DRUG" . +_:Nbd3857d53da147299b20034349498033 "SPIKE.MAP" . + _:N2f98a5fb6d244d438e0fb6cc41a3e313 . + _:N3b3e8788c5ee4e4eafa9d6fef7b80caf . +_:Nb5fa84b3e1c1458195aee9d749b2f41a . + "false"^^ . + "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information." . +_:Nd5e5dfd1972f4609bbc5e5d4466b2935 . + _:N2325daad1d7f4f65a8036720b3362fcf . +_:N47b311b0f4304d4081f38ef3111f4cc9 "MZSPEC" . + "https://identifiers.org/pigqtldb:$1" . +_:Ne771078d3d5b4dbaa3795fa069139e3e . + _:N84335ac5b5f54980ae1bcccfff340f6b . + "https://github.com/DiseaseOntology/PathogenTransmissionOntology" . +_:Ne89b15d47a704a3aade69182927b50c8 . + . + "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene." . +_:Na9f92c0edcef44c99f39ffce4be611b4 . + _:Nd8a1afbffd9a4d56b8e9d61e2e028675 . +_:Na128b929425b47139fccf49a581d104c "neurondb" . + _:N1bdb3eee7f384195a54508956df78ec8 . +_:N84aaee18a17d400dbb48b115579ed563 "CHMO" . +_:Nabd131948fb547bcb3895bfa2bfa01fe . + "An ontology to describe entities related to cardiovascular diseases" . + _:N65d07f49b7f3479487e3323b6b79cbb6 . + "false"^^ . +_:Nc6692d044e634beab8a1f0d1e9adbe45 "aphidbase.transcript" . +_:Nfcf42d2a7bf34ceda665b4037e791fce . +_:N1b195d8f46a249d5ad3829fc5d30d39c . + _:Nb4f01873cc414bce9e25c71bbb0ab066 . +_:Nb42cec42ee7843428b87d3f854c1e505 . + "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date." . +_:N7d40f3be50de4778a60ba69a5af91763 "meddra" . + "false"^^ . +_:Nd5680130fae24b6d8e476def451bdaa8 . +_:N118b39ffec344e72983d760c451ff901 . +_:Nb1460160128b4e8f9af9499a6a28079b . + _:Nf86409038a46471db5fe61ed81074fd7 . +_:Nb0c033b3ea604ddcacffb144f565a22c "doqcs.model" . + "false"^^ . +_:Nf15decb833154cae87f3f4d07e15aa74 . +_:N4c0650c2431e45d39bf1136ae1e1040b . +_:Nbd3f011629524aacbf5ad68f6dcc94ed "CVDO" . + _:Nbbc2252186ad4bd9b79f568d8fc2a98c . +_:Nf9de609453484e21bc09be1bbf6accbf . + "ProteomicsDB Protein" . + "None" . +_:Nc921a2d2555e456da17b5721278c12b1 . + "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules." . + _:Na56dc6b8a2f34a63949274a8a04f8bfd . +_:N3ffc0317b4f14c27b94248a98bd105f6 . +_:N53627565aee547febdccf3c44b09694f . +_:N94426dd100154efdb1fd9d2cbc451dde . +_:N81fa2428bda3448b895115d1d3974b84 . +_:Nad40ac724b394e9597d3d4f2079ce9ca . + _:N9b6e5dd4c2a243e6b2f8eec3a37bb207 . + "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes." . + "http://dx.doi.org/" . +_:N5abe586a9a3a40a5b1ebc0b8f1170470 . + "https://identifiers.org/mmp.cat:$1" . + "CIAT Common bean trait dictionary - version August 2014" . +_:N09a4c8d5cb3e45c1ad495f3d3ee16692 . +_:N66ce51d864b8498882ed8ef83e79f61a . + "PRO_0000016681" . +_:N35087fb7ec79477abf56a36bb14cded4 . + "https://identifiers.org/bgee.family:$1" . +_:Nc8f0c36dcf544ddea1a31add9f2eed0f . + "None" . + "None" . +_:N5f64cd63168b49c095767acbd3d5b6e2 . + _:N1b2445c3055748458f71ee0fd4b2e751 . + "https://identifiers.org/phosphosite.residue:$1" . + _:Na95ca4a28e564c86884911f795a7e5a8 . +_:N00037643accd467a8559313fb4807674 . +_:N7149d6baa1a24acabe738e51f25fb8b4 "ECO" . +_:N40c0ccdd28b64deb99f1f929d4714554 . +_:N6f29b2fe8af5477fba9a3fc73b5324a4 "Xenbase" . + "https://identifiers.org/euclinicaltrials:$1" . +_:N8ae0e5f0a2c042b8a3b038fb4778b4b5 . +_:Na7715ab86bd5424a80ee6677a2e4b2ba "NCBITAXON" . + "None" . + "false"^^ . + "NOR00681" . + _:Na268d3aa8c8e4dfa9ed18c3326f3996f . + "Intrinsically Disordered proteins with Extensive Annotations and Literature" . + . + "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials." . + "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis." . +_:Na6f9f4c911594efd956e93fed1657efb . +_:N34eafb1932744c5a8d844b7d9528d346 "gaz" . + "00000000" . +_:N1dabbbda973a4439b5b9d171058039ad . + _:Nde840be0d20b4d0db8b6e1e8fca4e431 . +_:N60e63b4b07394b248f0800876ab710a8 "rouge" . +_:Nccb97b0bb0b34133a7cb8392563c34a5 "DIDEO" . + . +_:N8aa8089cb5474b5796a93089d0c67a5c "crisprdb" . +_:Nf4c7a5e7d855452ba93d0c2fc4e96a2e "CEPH" . + "https://www.ebi.ac.uk/ols/ontologies/tads/terms?iri=http://purl.obolibrary.org/obo/TADS_$1" . + "false"^^ . + _:Nd8ba000443424d658d14b228bba91fef . + _:Ncec40608eff04656bbea3a8f343351ca . +_:Ncdbeae57f26a4b4fb06ced401a30e440 . + _:Nc153e64b00d7408f9ebc1159b1ac1054 . +_:Ndd8b54a8f3e74b969d0185b8bcce0939 . + "GLIDA GPCR" . + "false"^^ . + . + "false"^^ . +_:N060850a5f0a74d10a9fc93bbc13267c6 . + "shimoyama@mcw.edu" . +_:Nb4adbfb194134a6dab7f1c8af6b071c6 . + "None" . +_:Nc214d271b9674572bb86e0e0e3c1ae1c . + . + "http://www.fao.org/gsfaonline/additives/details.html?id=$1" . +_:N91e7679b19bc484cbdb486fde626017a . + "None" . + _:N188daae7c3da47879d9345874c6381f2 . +_:N1e81e4602e914b48b428fe5ca302bd86 . +_:N000df9d421ec44b4827291b1912bbbdd "aspgd.locus" . + . + "http://snomed.info/" . +_:N8382398e586c45068136eb545b6c2b34 "DOOR" . + "An ontology for the description of Drosophila melanogaster phenotypes." . + "true"^^ . + "false"^^ . + "None" . +_:N55f2ff0d284341e8b9913caf1a9b5e04 "seed.reaction" . +_:N149bfa58f3574ba79a7b6099973a76d7 "MYCO.MARINUM" . + _:Ne771595791214681b333406c27d7441a . +_:N6477dac462b74a28a7d0f0f860102700 "SABIO-RK" . + "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases." . + "The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks." . + "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images." . +_:Nb80cff7db3cf40eb970bd79eba460b40 . + . +_:Nbe1fdcfca90d44e184da720b748d2d61 . + "CATH Protein Structural Domain Superfamily" . +_:N3d3049473b1e41c998ee2acbef8b5ab8 "ddpheno" . + "None" . +_:N8d8de026f9cd404c8c3e4894b9f890ae . +_:Nbd6b6515f64a48a19f289bf5f16b484f . +_:Nd02590a865404912a2f8c213bfeab02e . + "https://identifiers.org/oclc:$1" . +_:N44c742fb19b5427c8d54290acabc6fa8 "jstor" . +_:N7671decde6854dc286a318d53e2b2fdb . + "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor." . +_:Nf5bf8136ffe7461d95e6a28c86ad0ee5 . + "53504" . + _:N03f6c58ce9dc4fd1b16763e62738fd9b . + _:N2c037deb82184158beab989d8dd0101e . + _:N33eb544740724625b6686e04ff66b6b1 . +_:N49af0f91565841d28fe38a7d75281b11 "opl" . +_:N3798789ca4be472698f5066bf5666666 . +_:N1fb38188696b4280b64a58d6165bfa41 . + _:N8584e3a431764315a6382f33f91a2a0a . +_:Ned5b0a610bda4b0d80132e8f51ca5d0b . +_:N4e84010357514ad0ad182a41eb75e04e "EDAM" . +_:N42d9ca43b05846e7911a66cb21d20a84 "ICEO" . + "Fyler" . + "^WB[A-Z][a-z]+\\d+$" . + . +_:N2aaf26fc444543c2bce896245eec3de7 . + "https://identifiers.org/ncbigene:$1" . + _:N03c5436d9cdf42869e420ae9d29fa1b3 . +_:N0a1df3559a394cb8a947f1afcc6bc47b "MCO" . +_:N8945ee0289b54c40bee015e0c1854eb2 . +_:Na07a0e1f9a514992a9d3a9d551f50a6f "HPA" . + _:N41d2b2341fd34085b421d2999ac174af . + _:N49fa65d3fcff42babbae7af9851fc241 . +_:N4efac9c002d94966ae0029abce0053c0 . +_:N5cae092f195a4680a6f30fbb020aac4e . +_:N1aa7ac5978fa4cd3ae8dfa32da19b0d6 . +_:N9aabb1640155447ab460a29f51c623bb "clinvar.submission" . + "false"^^ . +_:N1acf114c89cb4abe803f870e8b979bca . +_:Neae9fba37c15477abf9cd02d4776e841 . +_:Ncfda8f9bb4ea47278c38053aaea79b92 "FOODB.COMPOUND" . + _:Nfa29d24b50b14399a6c3538dd1096fdc . + "false"^^ . + _:N71ffee4e55f64a5c8e58cfa30826c4f6 . +_:N436744b48d6e4173bbb56938ef649195 . +_:Ne4cf3ff7560a4ae29a11d34fe140a105 "hinv.protein" . +_:Nafbcd0ad131248eea109b422c9cf855a "dct" . + _:N21351ed635974c38a5ce1fc6a56e3c92 . + "^[A-Z0-9*:]+$" . +_:N26a7cc3a64ca4a229a0a125450fb1a45 . + "Measurement method ontology" . +_:N509871f15f0f4e2da2e7c91601585810 . + . +_:Nec29b08342a048da88d4b210c4cf62c0 . + _:Nf9033b14674044899a9db6707d2c2dd8 . + "SubtiWiki" . +_:N28cff03e97b44a23948e18af00ada044 . + "None" . + "1000001" . + "None" . +_:N4b8040cff25e44fd8b2bca17a798a5be . + "false"^^ . +_:Nedc1b178faed4ec680b8e4f68628aac1 . +_:N63f52e74a8b44e8da4b99cde6742d89c "BIGG.MODEL" . +_:N3e34e079a5274b909682181fca951e57 . + "h_aktPathway" . + "http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1" . + "false"^^ . + "GLDS-141" . + "https://identifiers.org/orphanet:$1" . +_:Nf10ec361fd54475189057d3840b0721b "stap" . +_:Na3e1224b196f40fd9f21ef0cd482d499 . + "An ontology for mouse anatomy covering embryonic development and postnatal stages." . + "0101963" . + "mhb120@gmail.com" . + "http://drugcentral.org/drugcard/$1" . + "https://identifiers.org/combine.specifications:$1" . + "None" . + _:Nc763a70f58794bdab2c0dac66d81425d . +_:N537a143ec5e343bd8b7e1329336d19e0 . +_:Ne0c896ec02d74d0a890f6e1583856eef . +_:N91e9abecde844dd4a30e92080451677d . + _:N055efb0566a2480eae78ecc9075d4bb9 . +_:Ne24719bbb59147159296dc9adefd92e7 . + . +_:N1a4ce384ba984484b674c3e5222cf2eb . + _:Nec390dd0f7eb40d28bdcd879c4658668 . + _:Nfc3ab88a7805431b847c97c4e1937d79 . +_:N6bd7246bc7d8426188033448e5dd568b . +_:Nab2602af8f344e0ca8627af6dba72ad7 . + "785" . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/oarcs/terms?iri=http://purl.obolibrary.org/obo/OARCS_$1" . + _:Nd329b7b32ac045eb8cdf745130936e1b . +_:Nee8c09b7b6e44765a1f7d15e5ff3c634 "OMIT" . + "^\\d+$" . + "false"^^ . + "None" . + "1433C_TOBAC_1_252" . +_:N449bcc3858d1470fb174be7c15f20575 . + _:Ne3c92ffcb8df480ea493e70537bcaa46 . + _:N224ef3290e2246baa4ea6d1e88c3c8d1 . +_:N88a3123acb21443a8c0c5afb50770fe9 . + _:N626a8320525c4003a0157d9f37e33c9b . + "FAIRSharing" . +_:N6211d2cbfb2d4a5f944626a97578df5a . + _:Nad3c10d3c43845bd9c3c20e0c7909af7 . +_:N88c27e96d1e7473b9d6cfd5020fc65b4 . +_:Nd32e69c5cb88482c8177ed48dfc9ba08 "MPATH" . + . + "engelsta@ohsu.edu" . + _:N12aca4ef679743d19046917d38914910 . + . +_:N146d4ed0323a4445aba657362eec2209 "ma" . +_:Nf9033b14674044899a9db6707d2c2dd8 . +_:Ne4c692d9f7de404dbf4a96a63b97e13a "NONCODEV4.GENE" . +_:Nd81b77e06dc9412da8f20140504fce52 . +_:Nc2b000ad60f74e9395a167708ec91bdb . +_:N5e560ed1223f42d5903d1c2a91dc3c29 . +_:Ncd9d1702468741f49ba5000caac24d32 . +_:N7f3fb7ccf01143759739311dc0318cea . + "PTPN1" . + "None" . +_:N4bc01410d8de4f83884ad79b4c8520b9 . +_:Na191b6d58fcf4de5a6382761588654c2 "P665" . +_:N5b582358d28642da9c19e580f92b4a0f . + _:N50a83ee7f12a4458a85f9fbfc4799be2 . +_:N94f05aac83ca4ad28bd56ce6349e4fae . +_:N6ef46042796f440dabcf977213eae595 "kegg.compound" . + "false"^^ . +_:N27ec583eaafd4399b035f01c72aeedf2 . + _:N1faf6d0016ae4fe08602b875e9763b4a . + "Mathematical modeling ontology" . + . +_:N6eabb81ff742437bb362085121372aac . + _:N54db11f1b25946898292055d79efeadb . + "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]." . + _:N83f469a2c47d43ddb5e1534bf7eadef5 . + _:Nc4c3ef5b746b46b5b4086305149dd82c . +_:Necde56132d744b3cb10aaa44740288a1 . + "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013." . + "^[AEP]-\\w{4}-\\d+$" . + _:N2d6f11e8c8674dc38e77b759b4c348ed . + "veNOG12876" . +_:Naee96f3dd90d42a982e3035c7b734e3f "FALDO" . + _:N782b62903ec14d7e9e2c9d8e07580edb . + "^ICDC[0-9][0-9][0-9][0-9][0-9][0-9]$" . +_:Nc2f0c2ce375e404b92e2068b4b28cef5 . +_:N6c3f13ab838b417aaeed5a5e758df935 . +_:N3b8479c6ba30424db45bef3b67bc833f . +_:N122d02017f7445c5aa11794d28996ec0 "peroxibase" . + _:Ne4c2df75b9bc4347bac793b6bb5ee7b4 . +_:Nf6033d07d4d94c6da1ad5b9678bb51b1 . +_:N4540c25309574c53a92b978c339898e6 . + "http://www.cropontology.org/ontology/CO_321:ROOT/Wheat" . +_:Nb8035047343b406d8610abc4f03a4625 . +_:Ne5abbadd1e1146e4b053d1f85d156dd5 . +_:N697593c66ca449168b5dc2171fe6d531 . + "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology" . + _:Nedc4036818664f18bc3e236d1e114882 . +_:Nc53ff96b4cf947bca49b8e83914d9bdc "DICTYBASE.GENE" . +_:Nd9d375fbedd242f0a6299a111e9f38b5 . + "https://identifiers.org/hgnc.symbol:$1" . +_:Nf3b88e2151e3455892fbcb4466cb6130 . + . + _:N73656ba2f59a4db983de8ce6b0816821 . +_:N6477a030f93d43708c3d17187cfeb44f . + _:N592ea8f608ab489d9210f37aecbff7f8 . + "AURKA" . +_:Neab770d14ead4d9daac0697903df97bf . + . + _:N5e4e76ce213f49e8a888aab55512d080 . + _:N640b034223eb44a894921b06e8bcaa90 . + "Small Molecule Pathway Database" . + _:N35957830ff214770a7298df7b944cf2e . +_:N87c99676568b466bb164b5a792a2f626 "iuphar.ligand" . +_:N96714499a7e04c0f8fc8a8ae254dc5f5 . + "false"^^ . + "RiceNetDB miRNA" . +_:N84484c37ee2d4e1f817a804a527a0be4 . + . +_:N7ae65433d3344bd78cc8552ad1faafa5 . + . +_:N193384c354a043ba998f497e5f1b3aff . +_:N25c7f052586b48e9b33b99c19deb7590 . + _:N89de7f8c9aa442f5badd1c3a8394493e . + "http://purl.obolibrary.org/obo/fbdv" . +_:N69b4b8ac3d9b4944b62211beaa334202 "dlxc" . + "https://identifiers.org/gxa.expt:$1" . +_:Neaa407c4ccdb4addbfe7516c147b3a79 . +_:Ndd35373e88bc426a918917a43dd83ccd . + "TIGR protein families" . +_:N3b830f0954bc457b941e0fd9ea19f6af . +_:N242ff853929243fe8af42e112dc95de6 . + "false"^^ . +_:N09df55f72d2046f38c039d64c7b4b239 . + _:Nc0ab54e7c8834494a4ad91e220ac2595 . + "Protein covalent bond" . +_:Ne3483c04792b4e808732e2ec9b63eb0a "arachnoserver" . +_:N451fe22cc507422cb55f0c7ca3fceed3 . +_:Nef3f813744054860917374aafb7f397a . +_:N23145fa936ca425fb244256f342c3138 . + "http://biomodels.net/vocab/idot.rdf" . +_:N4696a2cb81d04488acfbd975a3bba171 "mge" . + _:N22244989c630447d9fea929e53f9bdc5 . +_:N32c43bc0c40d41999ad2157a9c5b0fdb . + "^\\w+$" . + _:Ne771078d3d5b4dbaa3795fa069139e3e . + "KEGG Environ" . + "C138986" . +_:N6fc67fd427474a8e808b7592459cd108 . + "https://identifiers.org/agricola:$1" . + _:N5a55d8ee439a4ca293248119c5bf3bb0 . +_:Nd76dc6d8be22474a87807daa695b2ca3 . + "^\\w+$" . +_:N4ed56ed51fd54850a5ee138a76be959d "jstor" . +_:Na33b1c27f3d944f4ab43d0f4448f0e68 "umbbd.pathway" . + _:N0127cafdc411485280a041aab3123709 . +_:Nf68fbf715ea143e39cc54c45dc393a25 . + _:N165e8a378f9349208f6eed4fbf0386ec . + "https://github.com/Radiobiology-Informatics-Consortium/RBO" . +_:Nf1f8553106be48cf88a28c1a74925371 . + "Hymenoptera Anatomy Ontology" . + "false"^^ . + "^\\d+\\-\\d+\\-\\d+$" . + . +_:N8af0d8f3d2c44b169cf209958a9b1a5c . + "false"^^ . + . +_:Ne771078d3d5b4dbaa3795fa069139e3e "pharmgkb.pathways" . +_:N4319ca1129624791a30168f78221f40b "yid" . +_:N123d008c64c3454ea007bca0c42897e5 "UNIPARC" . + _:N8d65c06c4ba048c5bef45d6ec4ef9a6e . + "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context." . +_:Ne96ce534736d42eb983e89e9b7025f91 . + _:N8d0f731de1d54ba4a238b94e3a6bdb81 . + . +_:N560685b9f7fc424c9431c313d33289ae "MFO" . + "https://identifiers.org/pgx:$1" . +_:N2c4563ff5bbb455a8fdbcedc5e658ab8 "gmd.gcms" . + "http://caps.ncbs.res.in/pass2" . + . +_:Nefe38e24fc614cac83402fa6da9fbfd1 . + _:N0fdd0d6ca657410396fdef3dccfaea59 . + "false"^^ . + "false"^^ . +_:N6b470e9d06a8430991b36dcdaddca9e3 "RGD.QTL" . + _:Nb73511ea1f704e3d9a362feada7d7bd5 . +_:N22debf0534a543ac8bd37b7233a1f143 . + _:Nbcbdbbf26f3a4f2497cf4725f6a7809a . + "https://identifiers.org/mgnify.proj:$1" . + "PSEEN0001" . +_:Nc28463b3f2244e5b815e32109b5168a7 . + "58788" . + "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact." . +_:N44b9966bcaf8432b91ef2bf052542a2d . +_:N7626eea458c442239dc7df618ca5c645 . +_:N5f60c22bfee94d1290367157e65d7d96 . +_:N583840c8e9fe44b589c1bbb9a75037b1 . +_:N61883989ec534272ab702ac093b451bd "giardiadb" . + "false"^^ . +_:N3a5321d77d334ca7b2947ed66e01f7e6 . + _:Nbc852d0a0e4d4a5e950aad5f4f5f6dd9 . + . +_:Nb381c8f829104436a233803b4f678538 . +_:Nf931aa5914ce46c78d44d69cf925925a "biomodels.teddy" . + "https://identifiers.org/sdbs:$1" . + _:N91541985c3cc4936b30a976f5bb3fc5d . + "None" . +_:Nd2b5996fed224623bd6027e0d5b34902 . + . + _:N3f755840ee874912888758268a1873ed . + . +_:N31e069f0d87047248a4d0e831762caf9 . + _:Nd5977cfd97d4466b8992aaea1bcd0f1e . +_:N5ef49c39fa8e4408b6b8d107858616c6 "cadsr" . + "false"^^ . + "BRENDA, The Comprehensive Enzyme Information System" . +_:Nf3141642ca524bc8b9c2300dc8410a75 . + "None" . + . +_:N8f786b8d2e0b4bf99f4a6923213ef603 . + _:Nb564fba508a944db9ce629fd1af556af . +_:N13a737919a6241aba998e674d3c65f03 "gmd.profile" . +_:Nf06937b650cc4b9c8c8b476b4f021d0a . +_:N7579e4289b0244808c46bdd32eb87eee . + "false"^^ . + _:N67d62b0aab0b4c0a8ed0a40a50abdbbc . +_:N890e05629e82418daae016ee5930abcf . + _:Nc38707fed67444a18a6cd121040eb5df . + _:Nb80cff7db3cf40eb970bd79eba460b40 . + _:N5fa9e384b6c04f18bacd90a681501a50 . + _:N5b2d34296fc240f99c5d19b1e619ebb4 . + _:N627860dba0144373830ebaaa57264fce . +_:N21b9d586a4b1492db5faea1880a4cbd4 . +_:N17b7b5f8bd8e48fd8f1121a44348d89e "FBbt" . + _:Nae88c5b2ef314923b4238073336d5ffd . +_:Na8f622f95a6641c897f06ca3207119e6 . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/rnao/terms?iri=http://purl.obolibrary.org/obo/RNAO_$1" . +_:Nd1e5e7677dbf47ab94d8547e678d7e43 . +_:N94c4885d8eea428f9bebdd3857c14841 . + "Network of Different Plant Genomic Research Projects" . + "None" . + "None" . +_:Ne255a9b140df4cbf8a569f461cc8646c . + _:N2ea63690ee3c4421bbd531c45e80b777 . + _:N520122c3a7054fae86addd4f5c2da621 . + "false"^^ . + "http://pfam.xfam.org" . + "T3D0001" . +_:Na47ca26d16064fa0b17050d68f86ff91 . +_:N5c5f8928bd43420dbdec197584fcac95 . + _:N64bdeccd7c45488297e63bf9d24b5098 . + "0000066" . +_:Nca00206ad74f4779bb7a8b036f206d93 . +_:N1bebf4bdc80e431a90e6bb5682641a62 "WBPhenotype" . +_:N4adbe7f516a8422086c6b833cbc802e7 . + "cgrove@caltech.edu" . +_:N2d28fd2bdb094b6886811234ea9032a5 . + "BitterDB Receptor" . +_:N72602d13bbfe4e09bbadfc4696541050 . +_:N85704ef5c0f643b1a599f6364496ef37 . + "^\\d+$" . +_:N74c2287c8342434ca6f0e3af183b1f62 . + "Mouse Genome Informatics" . + _:N46206fa4e6f74295bc34fe9cdb6dcb4f . +_:Nab6e191a05414027bf0a70d9ae37b3f9 . +_:N4d0021b4cf294a14913a947a03056e04 . +_:N7508b7994b404b079ea74ec87238dc42 "GeneDB" . + "VB.Ob.3736.GRSM125" . + "https://identifiers.org/merops.inhibitor:$1" . + _:Nd074d13c63424f3bb0b0b8cbb607b651 . +_:N02b71cd77b754dc2a88ecb8d37bc776f . + "helpdesk@cropontology-curationtool.org" . + "https://identifiers.org/uniprot.chain:$1" . + . + . +_:N1b195d8f46a249d5ad3829fc5d30d39c . +_:Na8f622f95a6641c897f06ca3207119e6 "hgmd" . +_:N84cd67bde87a436291184ca53db79a64 "BTO" . + "M0001" . + "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)" . + "false"^^ . + . +_:Nc8416aadb1cf4368b6a5462ee8eb1794 . + _:Nf7126788d8b94331b0b36353f277a4aa . + "Medical Subject Headings" . +_:N42d33c75a2a142b88983e5d7af7c548f "aro" . + . + "None" . + "MNXC15" . + "false"^^ . +_:N6b9a1df959aa4c40b01ff8ef0cfe133f . +_:N715fc183968d463c8fcabd0b15d1b944 . + "http://www.cropontology.org/ontology/CO_350/Oat" . +_:Nec5d35256b0744948e66a9964c550fe3 . +_:N513f6a8014654db4b8eeb6cfd848c0c3 . + "Transport Protein Database" . + "false"^^ . +_:N044a22f95aeb417aae625ef33f90d036 . +_:Nc848288e34894435818273852c507d0d . + _:N5b7e71e17c1f4549ac4207d03ecbc799 . +_:Nf769bdef2ab7490690f238527a3e9b83 "P685" . +_:N94f1c346526741799e37c41ca97a276e "arrayexpress.platform" . + _:N99f02343684149afb417e452de205f21 . + "None" . +_:N859680eb65df498293fb9c6596e4dc1f "aphidbase.transcript" . + . +_:N5a9494b444844343a80c3c967a912b82 . + . + "https://github.com/BgeeDB/homology-ontology" . + . +_:N3ffc0317b4f14c27b94248a98bd105f6 . + "^\\w+$" . +_:N81fa2428bda3448b895115d1d3974b84 . +_:N1024cd858750460cb6ab48e667ec01c1 . + _:Na15c520ef884474094b069bedc2480c6 . +_:Ne0389e1c40e84f63ac122ca30b5368f6 "mw.project" . + "CRISP Thesaurus" . +_:Ne293cf9d442145209024c8ef08357646 . +_:N79efe7393aec45938e428ecb904a004a "taxonomy" . + _:Nedc1b178faed4ec680b8e4f68628aac1 . + "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue." . + _:N55ffc9a9f1b54573a766100fc961437d . +_:Nf2309524fc7c4afdb13aa6b32268839d "combine.specifications" . + "EMLSAT00000003403" . + "https://github.com/INO-ontology/ino" . + _:N3385bafddf2a45f6a1a9cae4e5f7d022 . +_:N926a938d00684749813761380882caae . + "The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems." . + "OMA Group" . + _:Nab2880ce604a44538e49d8ecc478966e . + . + "JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory." . +_:N35087fb7ec79477abf56a36bb14cded4 . +_:N2568221a60fa433ca6f565e121127eb7 . +_:N7e079376a40d4bc8a8fab39e6c2a86e2 . +_:N5f64cd63168b49c095767acbd3d5b6e2 . + "MassIVE" . + _:N13f5a7b5b7834639a87ed7d82091593b . +_:N2c037deb82184158beab989d8dd0101e . + . + "https://identifiers.org/rhea:$1" . +_:N4f196344fb3742efa96294fcc2829d2d . + _:N94eb63e92a3e490bbdc1b5fc1ab5bc9d . + _:Nfbe097d7e74a40da9ca97b4ae656efa1 . +_:N6377a245e98b45ab9ffdec4daec1fb2d "norine" . + "http://qudt.org/schema/qudt#$1" . +_:N8193de38a54d4827be41481ddca10a61 . +_:N164449f86942404a8e5af733514cf7bf . + "https://identifiers.org/swiss-model:$1" . + "^\\w{1,2}\\d+$" . + "None" . +_:N3458b2b01d2642c1b76f1290871fddc0 . +_:Nbc138365347c48219d67bd2bd8115cff . + _:N4fa636b2e2f343e1adc0205bb1e09053 . +_:N3db9de85e23a4630a6de196c2d3eec9b . + "http://www.jcm.riken.go.jp/" . +_:N815ca4a473924ad99be0ecc01b0e331c . + "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012. " . + "^[SED]R[APRSXZ]\\d+$" . +_:N478f4c6c28aa44edb6963961c029cf51 . +_:Nf11d63b473404ae2b980cdfa5e1e5720 "VIRSIRNA" . + _:N4a59ef54031d477d8194d9905374a87c . +_:N54643e830e2a48b9884ef65193ce8c81 . +_:N2dac40e822694d7bbcfa879e7299dffe . + _:N3997abfb2d2a4f0a89da2ff446f99886 . +_:Nb1af4bb46654468393bb703e5f2bc063 . + _:Nef4e4f1daa5a42519ee95b2f05239a15 . +_:N313f049fa07c42d2b8c4db33a79579d0 . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes." . +_:N139ae57b88ad4cfab078c5661d71ff31 . + "^[A-Za-z_0-9]+" . + _:Nc1e85fe48d6e4c9696eec3317dbff513 . + "Cellosaurus" . + "https://identifiers.org/pmap.substratedb:$1" . + "None" . +_:N7a1b545836704a7c9936c72bf3357aff "ARRAYEXPRESS.PLATFORM" . + "http://www.violinet.org/vaccineontology" . + "None" . +_:N7e087a58d1a8477bad9d7b86fa538da0 . + "false"^^ . +_:Nb72c2707323e41f9b45306fa978d4e02 . +_:N6b9c3740830840d0bc651c798a82ddf4 "gmd.analyte" . + _:N05a5d3a9dfcc413fa0f14a15d978f106 . + . + _:N5a0b0117d91d483e86dc8d7a6677bd23 . +_:Nea58fb47abac48b19109284e9097190e "pdumdv" . + "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1" . +_:N7158587263b9475f860a87210ce77426 . + "None" . +_:N5131b01dad7345f3ae0a2019463051b6 . + "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models." . + "^\\d+$" . + "MIRT000002" . + _:N60a2a37d481348aa9be47d1629e99c36 . +_:N9164accdaef6411cbe2467dc04dc1082 . +_:Ne56c0dce8aea4948b29cd811236f6b3b "T3DB" . + "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$" . + _:N622778198fee4607a2970c06bc70a7a0 . + "https://identifiers.org/img.gene:$1" . + "https://identifiers.org/greengenes:$1" . +_:Nd76dc6d8be22474a87807daa695b2ca3 "BIOCYC" . + "VAR_068078" . + _:Nf501d36f84574f1cba14ae6f21c06064 . +_:Nd7bc1fc257414dbeb5dfa03865680cb8 . +_:Ndcc44a474bfa4de4ae724df3ef6dec24 . + _:N659944b8038a4e7489693ca17d7c2dc6 . + _:N28c06f5a35ad4b20b244bad814fb7386 . + "MINT-10000" . + . +_:N1535adae405c4fda8e2de017844ab66a . + "false"^^ . + "Banana ontology" . +_:Nb1519e9f33924eb48cbd4d8abd0249a3 . + _:N3af91a2840d640fa87b0ddf879ddd7df . +_:N6261bf3c7aa04edfa9f2c1dc5fc91c95 "ohpi" . +_:Nd81b77e06dc9412da8f20140504fce52 "MRO" . +_:Nc3c4ffc882a143d29c9457ae75461ed4 . + _:Nfcfc70aa95fd4d999c722ca18324e671 . + "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis." . + _:N2d4dce4058d741618b9ece3ad2df4671 . + "None" . +_:Nd7dd9cc4b6f44b3681feb243ee296e33 . +_:N2d7e38d6d55f4bfaae8fef8cb8734149 . +_:Nd29c2bdd613b409fb8500e0ac48880e4 . + "false"^^ . +_:Nea6cb7fa3daf409e895112dd9abc80f6 . + "false"^^ . +_:Nee5001ef656c4954803add1fbe3f8c54 . + "InterLex" . +_:N0e22b53495a6467fbefd92bc16d9945a . + "2701" . + _:N729e3df9cee84b5289c1caf94c7b90af . + _:Ndd8427094a264af5bd90879585b7bfa0 . +_:N53f26baa9bca49569e20d07fa4401455 . +_:Nd5df0329d19e499c9f02224689a11aa2 . + "None" . +_:N22ba4ed15345422ca502294a5c09b563 . + . + "http://www.aspergillusgenome.org/" . +_:N7e4067c94be9475d81fce727a7d67f84 "insdc.gca" . + _:Nfc6bdb142017498fad2dd78b18c01382 . +_:Ncf3db61bff6d46e99d5595a4de0f1794 . + _:N42ed030fcd494e138ee0fcefb8b43ba3 . +_:Na93aa711212843539d6c51089873e9aa . +_:Nc8379d73c2744a94a75dfe1f6c8d9c2c "microsporidia" . + "None" . + "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships." . +_:N19477b0983a147109695bf3211e0b195 "WIKIPATHWAYS" . +_:N5252f51867e14d799a324047507ab116 . + _:N8983751d697942d98753b640fbef542b . + "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)." . + "ClassyFire" . +_:N11dcb98434144f8e9825ca72f8d08a62 . +_:Nb4a2e4f6f8d3479db2ca2b6df00cb379 "VO" . + _:N599fbc7b08e54f45bf0ba3f5740b3f02 . + "^\\w+(\\_)?\\d+(\\.\\d+)?$" . + _:N41e0bd69c8c64d4493e92209284e925f . + "http://www.cropontology.org/ontology/CO_343/Yam" . + "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information." . +_:Na15c520ef884474094b069bedc2480c6 "FYPO" . + _:N5def2c8ffe9e418e9d900c3ce6c073f2 . +_:N4b8040cff25e44fd8b2bca17a798a5be . + "https://identifiers.org/sider.effect:$1" . +_:Nf95c00c8b0b34fff8983bc5c0a83aa01 . + _:N83ec9068c56c446f95d7792495a3cd9b . + "^rs\\d+$" . +_:N4a96af6529a0486db7c78c2e7bbb7cd0 "ino" . +_:N2600717678a14e5297bbb6d6e414b694 . + "None" . + "^[0-9\\.]+$" . +_:N285691ac1ef84fc68c4e12b89e22fa35 "genedb" . +_:Nfef75cdacff14b1ea81f7c42f86bc838 "HCPCS" . + "https://identifiers.org/multicellds.collection:$1" . + _:N45aca29a83fb4bb9a80209d6f8584ac8 . +_:N6f2ac14b844f43469270fa8b2fcfaa93 . +_:Na9901f06306c44c4bcd541b81bfeeba9 "Q55118529" . +_:Nad42637882094a00b0fb382edfa60afb "ECO" . + "None" . + "false"^^ . + _:Nc9f511531adb4f93bc69f67dd80afb3f . + _:N0f35ee7982034b658a0e32b16ac8a16e . +_:N39828499f6c546bda7f28fee6b319c0b . +_:N5c98a3be823847878ae1630f7297e3d0 . +_:Nb822aca4c83a4b70ad49a34d3cefdcbb . +_:N939c2f7edf224ca3af3e1512b04e9231 . +_:Nda64ad3fa41049ea883e5b2db5cb4559 "oridb.schizo" . +_:Nc85b5255ecdb4fe98fafb8e9fe8b1039 "cbioportal" . + "https://www.wikidata.org" . +_:Nce93b8d621e64a7c9f48a21e9ddeb792 . + "An ontology of prokaryotic phenotypic and metabolic characters" . + _:N83530cc599b84fe7940d8ce3c983cf03 . + "false"^^ . +_:N1fd53614f0e34052adccc66f3b013f82 "aop.stressor" . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena." . + "false"^^ . +_:N76fbd4da362e45179fb96c955303a067 "PSIPAR" . + _:N0814801545304cfcaef94d6613788a33 . +_:N5026165633ee40a6b233c78a6eb00581 . + _:Na96b4e5161ff475881f33023e1879319 . + "Sweet Potato Trait Dictionary in template v5 - CIP - November 2019" . +_:N15ede96e1769489ebce60bf258f2fab3 . +_:N2c4e8d870cd549af8fafb07f2260b16d . +_:Nc7c5ec27739c4c61b1825b44052bbf32 "CHEMINF" . +_:Nb35d28b8ef394a28a86211becf876d8d "EUPATH" . + . +_:Nddbe40c14fd446c892222b256b232a4f "ecyano.entity" . + "false"^^ . +_:N7830bf9fde194237a9d1c4f0c627fc12 "RO" . +_:N28218847d0304685a9c506c6d668b009 . + "https://www.ebi.ac.uk/ols/ontologies/hcao/terms?iri=http://purl.obolibrary.org/obo/HCAO_$1" . + "false"^^ . + _:N76fbd4da362e45179fb96c955303a067 . + _:N491f8e1938c5424e9065aaaa820146ab . + "https://www.ebi.ac.uk/ols/ontologies/co_343/terms?iri=http://purl.obolibrary.org/obo/CO_343_$1" . + "false"^^ . +_:Nea524d2309e64b668303daeb4e073b02 "DUO" . + "^\\d+$" . + _:Nd83bc23440ce42da8f8c494c2cae5b15 . + "false"^^ . + _:Na935e6378d53423581f76a21e73cfb11 . + "https://glygen.org/glycan/$1" . + _:Nc8f0c36dcf544ddea1a31add9f2eed0f . +_:N1176479649ed47cfb8a325f45ad0bd6f . +_:N19edf8a029664b37b83b24d939f1b9e4 . + "false"^^ . + . +_:Nc78b49656b02413489fb6ab0e2b2817c "opb" . + "^\\d+$" . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$" . + "https://www.ebi.ac.uk/ols/ontologies/co_333/terms?iri=http://purl.obolibrary.org/obo/CO_333_$1" . + "https://github.com/obophenotype/upheno" . +_:N6b449dac218d4985a96c0d38bb7eb2ba . + _:N2d77f58044624c2681e6727015a9c1c5 . + _:N39f1cd0adaa9465b9724cf11629ff8cf . +_:Nbc852d0a0e4d4a5e950aad5f4f5f6dd9 . +_:Ne73a56f469ad4e368997179def7cfbd8 . +_:Nedb0b07e3c4c44e4bc0aec4352f3355a . +_:N5a0b0117d91d483e86dc8d7a6677bd23 "UNIPROT.ISOFORM" . +_:N251f9f99ef554df88d2b662ff04c25bb . + . +_:N5ec2840aa17a40698f6bc2d3dc490408 . + "https://github.com/AgriculturalSemantics/agro" . + "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol." . +_:N49af0f91565841d28fe38a7d75281b11 . +_:N77f906046c05437a8f60984a797c29ec . +_:Nd83bc23440ce42da8f8c494c2cae5b15 . + . + "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more." . + "e0333" . + . + _:N6832ffd9340e48ae9cc2a982c45933dd . + "https://identifiers.org/DOID:$1" . + "53504" . + _:Nff27a709af3a4fe8ae01cbece23d2e39 . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$" . + . +_:N9b495c2d5e8144bda92dfa7aef7d6ffc "MIM" . +_:N22dca894660a4e458bd02ad1da2e2630 . + "https://identifiers.org/gwascentral.phenotype:$1" . +_:N160cb4698ff044ef9e1a24c740f08a3b "dbsnp" . + "SBML RDF Vocabulary" . + "http://rgd.mcw.edu/rgdweb/ontology/search.html" . + "https://github.com/EBISPOT/ancestro" . +_:Nee77eba3e0bf468ab18c448e942987b9 . + "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'." . +_:N12d0c5071f6348bda4c794c315a90c68 "CL" . + _:N73e5f388bb8b4fc4bb0d363af6cb871b . +_:N04923ac2a58f48ccb25c6ce04da8578c . + "false"^^ . +_:N2dca6345da8143568c84744f4918eea9 . + . + "https://identifiers.org/pubmed:$1" . +_:N5be3c89f13174c2fab5ceba9277531ce . +_:Nf70925baf06540a1931af8a283077356 "grin.taxonomy" . + "false"^^ . +_:N7ddfa9fe4acd45a5898ff12424483c47 . + _:N270fe638aaef44fea93156c3cb6b8818 . +_:Nd588fc77e94648a086ef4e5724b37f0f . +_:Nd010ae96dead4ca09c7c1057583e0d8a . + _:Nfdcf2f6a6be5499d83c9e52b88254120 . +_:N881c18eecd944ea3858f4a228961dcf3 . +_:Ne0f95a77c3ae440fafc3cba482a97c18 "BSPO" . +_:Nf3b88e2151e3455892fbcb4466cb6130 . +_:N0d4e150e6cf14312bfc05dcf34bc7b04 . +_:N4a36bfe9b4da449da41632d19bc227a1 . + _:N54243b25354245e281eaead2fce313c9 . + "https://www.ebi.ac.uk/ols/ontologies/wbbt/terms?iri=http://purl.obolibrary.org/obo/WBBT_$1" . +_:Nd1792c902ef14e6380eb65dede96e971 . +_:N4165a4d0dc3a4c21bcc7a612ed1e58c1 . +_:N96714499a7e04c0f8fc8a8ae254dc5f5 . + "false"^^ . +_:Nedc4036818664f18bc3e236d1e114882 "pgx" . + "https://www.ebi.ac.uk/ols/ontologies/mpio/terms?iri=http://purl.obolibrary.org/obo/MPIO_$1" . + _:Nd6466d84cb6f488483fc7e14a2b4bc38 . +_:N37d27cd8c451497e976fd95175cfe685 . +_:N193384c354a043ba998f497e5f1b3aff . +_:Nc9f8b6f4f3e642f99b6bbf7ae97f4eb7 . +_:N25c7f052586b48e9b33b99c19deb7590 . +_:N52aa21f0fc3642a2abb7102e5a15bc62 . + _:Nf801b1d6f03d4d47bdeb3e63822756c8 . +_:Ne69cf62b7aaf4843b421cb2cecf3b1d2 . +_:N3ffc0317b4f14c27b94248a98bd105f6 "hinv.locus" . +_:N5a0941b6a2e045b2a303aa35c0a67e7d "FAIRSHARING" . +_:Na5c6f621c5b74d9db3920b720aab4b32 . +_:N98d9751741d14917b3d7fe23e9746a73 "EFO" . +_:N015b494fa305448c86e2bcb132b5eab7 "ega.dataset" . +_:N2b2fb1fb630f4aee94ddb6ca1ce70588 . +_:N81506de719a34a85b4aecccc46696ca4 . + "false"^^ . + "https://identifiers.org/chembl.target:$1" . +_:Nbbc63def8fb34bebbd61dd465e56c126 . +_:N3b830f0954bc457b941e0fd9ea19f6af . + "UR000124451" . + . +_:N213b00a3151341df81813d4dbfaf3cca . +_:Na4a049dd5cbc49c59471439e68bb54f2 . +_:Nef3f813744054860917374aafb7f397a . +_:Nec1c6d13a5f64547b65e854ba171d8cc "glycomedb" . + _:N60e999adb28748a09eafec120964b4e4 . +_:N2ddf05d33ac14ca6a59f557f920d7ad2 "BIGG.METABOLITE" . +_:N617c2e4f9c7742cbb5b2ec5911bafec8 "UMBBD.RULE" . + "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability." . +_:Nfd1a6e0b22d64f11ab9b4a212ca4b82e "KEGG_REACTION" . + . +_:Ndaaa12bbdd6c4f4da590d8aa200cfc77 . +_:N63109f81ba144f1cbd35c231fe1c329d "comptox" . +_:Nd81bb6e0a0924d93a87113622371b621 . +_:N12824a2c768a44b6922571c6ed72d297 . + "None" . + "true"^^ . +_:N9bf12db119ef4c78b2581e756dac52df . + _:N8e6a9a8f85cd430e8099266a1c5e8301 . +_:Na9467ae1f86c4b2b9a95ba8582100fc8 . + "false"^^ . +_:Nbff79f3a31024f4abc7c5f2ff8438091 "FAIRsharing.mya1ff" . + _:Nc66b5b8d00274f79b830ae2a632fe46f . +_:N122d02017f7445c5aa11794d28996ec0 . + "developed by ICARDA - Dec 2018" . +_:Nb151f50c72eb4811acd8eb0511a7ca7d . + "https://identifiers.org/pdb.ligand:$1" . +_:Na3c6524910eb4d528e5800c6aa808111 . + "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information." . + _:N227633bce6834a9a8ed09b3f5382d44e . +_:Nca1d8a25db384622ac2386b38baf9fd2 . + "https://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_$1" . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." . + "0000564" . +_:N407790e5df3948d08fbcc558c5f2fa69 "FAIRsharing.LYsiMd" . + "^HIT\\d{9}(\\.\\d+)?$" . +_:N18cb1c5e41dd480784b07346d12b5591 . + _:Na7b90f5c91d84eda98405a4509c32360 . +_:Ncbd165bcf0df42b5b764116ce5448d0c . + "TIGR00010" . + "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN." . +_:Ndd68281b550e42a0aa290f072baef954 "jaxmice" . +_:N172e9923a2064c978fc42ba3b1f3217e . + "https://identifiers.org/aceview.worm:$1" . +_:Nb1ae02a6ce014ecb8fa7ba49e0affd28 "string" . + _:N0648155cb06c4694bd24bd8fb7ee8924 . + "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature." . +_:N8d73ac8ae58241ebb2b52bae93a78b80 "AAO" . +_:N9aabb1640155447ab460a29f51c623bb . + "^\\d+$" . +_:Nf100bba0899a4dbd94602e7081c50a47 . +_:N13bd727b738d42a1b8cd3935da53532c . + "0001998" . + "CAL0003079" . +_:N5fa9e384b6c04f18bacd90a681501a50 . +_:N3a5321d77d334ca7b2947ed66e01f7e6 . + _:N8b92803175b54ee8b8098fcc90c831c4 . + "^\\w+$" . + _:N637ba7877ea84cb6a79517357caa5ca6 . +_:Ne0d58ea4554f4334a4a27cfc6fe0ba13 . + "vasilevs@ohsu.edu" . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information." . +_:N7ff5e27c39a9477992e64f1edc9ff65a . + _:N7932e26556314c34a1abdd233232306e . +_:Nffc1e04a230c4648a36ef0d3a80e56bd . +_:N806585aa73de468485660ac890b4f0b0 . + "BitterDB Compound" . +_:N4998dced729d45c5bb9e3a35d18da197 . + _:N4d2937a770d74a058e4c5f83f79004b4 . +_:N890e05629e82418daae016ee5930abcf . + _:N1ebdf534165545cb91f54beee93ed9f5 . + "https://www.ebi.ac.uk/ols/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_$1" . +_:N138b7930fe4d4312b987c113045bf374 . +_:N3be8f991ff2f40649de52d6964d9160a "XAO" . +_:N69cd46d39dfa431daf6a6187977e87a2 . + _:N5d27c91cd94a49ad86cd580600ee90bd . +_:N4c014e5fe26f4780bb66c88bd65e921c . +_:N52165dde142b4fa2894e163f44dc0793 . + "cooperl@science.oregonstate.edu" . +_:N2ee972084bd241859f5af66405574477 "issn" . +_:N7f965a343da544af956187768633dead . + "https://www.ebi.ac.uk/ols/ontologies/ogg/terms?iri=http://purl.obolibrary.org/obo/OGG_$1" . + _:N98cc88af9dd4416690a86ae4e3dc26c1 . +_:N940d146e5c4749fda1c7419cc32e8dc9 "FAIRsharing.g7t2hv" . + "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1" . +_:N0dce48583ed640b8a0d4f37edf3b2134 "ricenetdb.protein" . +_:Nf12bb0b66bdc4afcb936b1511512ea97 . +_:Nd4aa2c0272d04b3a8672c37830698ad0 . +_:Na709d50f045848419bc52dca22c7c979 . +_:N60270bbe69ae4608b3aa6c251bbf0e0f . + "Cellular Microscopy Phenotype Ontology" . + "GO Relations" . +_:N9ea1d869db4042758a0d2f4c4c8880f5 "antweb" . + . + "Plant Phenology Ontology" . + "https://www.ebi.ac.uk/ols/ontologies/co_357/terms?iri=http://purl.obolibrary.org/obo/CO_357_$1" . +_:N667ccf0d4f1c4d2a87ea3cba1db6032c "chembl.compound" . +_:N0c7528299ecb4d3e85531f2ff754b34b . + "AT1G73965" . +_:Nb55c1549aacf4a4ebfa326cadbdee917 . +_:Ne895005481e5471eac010fbc02f792c8 . + _:N8d81152bbfa24c91b4752cb8a547e227 . + _:Nc9f8b6f4f3e642f99b6bbf7ae97f4eb7 . +_:N4adbe7f516a8422086c6b833cbc802e7 . +_:Nd5f86ae572d444a0aa5420fb0ce16f38 . +_:N8510b6616ffc47799cf8972ec149945c "ORYZABASE.GENE" . +_:Nfcc7f2094e974d4683567c1d2c3c3da9 . +_:N91fe0c3a6ab046cb8bb2c0a38e4e1246 . +_:N72602d13bbfe4e09bbadfc4696541050 . +_:Na647065ea51f4a0eab7eab047f150d01 . +_:N67d62b0aab0b4c0a8ed0a40a50abdbbc "panther.pathway" . +_:Ncaa8161738004584ae77962f7ecf65e4 . +_:N44ba8e25fd9441028f2f5fd62bc8581d . +_:N67bc7924f2d046d2bf3656c781cb4e04 "PMID" . +_:Na9467ae1f86c4b2b9a95ba8582100fc8 "proteomicsdb.protein" . +_:Nad4d2ef1f7d3422c9ea8ab0c947a0d49 . +_:N8e6a9a8f85cd430e8099266a1c5e8301 "xlmod" . +_:N7658294214fc4051b05ad5d5c11d2454 . +_:Nef3f813744054860917374aafb7f397a "uo" . +_:Nf501d36f84574f1cba14ae6f21c06064 . + "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources." . +_:Nf05fd9c782464f5584caaa70a6ac4d62 . + _:N4e0d3601d21540ebbc2e9bde6a191a34 . +_:N4d0021b4cf294a14913a947a03056e04 . + _:Nbb1c87d6d6dd4053adc837ab25f64cc7 . +_:N3834e6238e6d45e6aba6b45f32b21c82 "dbgap" . +_:Nb03642c9ea6a4b5b88ce629411d65756 . + "https://identifiers.org/ensembl.bacteria:$1" . +_:N652c67cd8a8a4d81854b26eebfa8099a . + . +_:Nb6ae6432829d43e3ab0ce427bc8e5f9e "PHIPO" . +_:N9b125052071540008908f2259114dfb8 . + "https://www.ebi.ac.uk/ols/ontologies/cdno/terms?iri=http://purl.obolibrary.org/obo/CDNO_$1" . + "P00266" . + . +_:N437906cbf04b4deaa1ce22e58219eb38 "BAO" . +_:N07b3c36d14ef4c039c2c09c0d599d421 . + "None" . + "None" . +_:N7639323a45cf4d31952ab46597c6d2d4 "P932" . + . + "false"^^ . + "AmoebaDB" . + "false"^^ . +_:N4d349fd5393642cc9cb06cd449a5898e . + _:N878adb9451f5450e859da6fe14955ca3 . + "C. elegans phenotype" . + "1466" . +_:N6598f9494add4988b024ba83da504b2a . + "None" . + "None" . +_:Nb21c28642a61408cb9128902dc3a7d01 "chembl.compound" . +_:N93e020b3b5b846d88bc89ca190b65e29 . +_:N7d7fa6c269a944dcaf2ff1255f01108b "ICDO" . + "0000144" . + _:N7e779451696b4ce698462311c99695a0 . +_:N2108c32a22e24fdbba8581aa967735ac "oclc" . + "alayne.cuzick@rothamsted.ac.uk" . + "false"^^ . + "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways." . +_:N5a9494b444844343a80c3c967a912b82 . +_:Nb2dfba330b314a1aa94ac104d6025d1f "ANTIBODYREGISTRY" . +_:Ndf972beb78f941589f1a64e1ac016baa "degradome" . + "van_slyke@zfin.org" . + _:N0800c26950534dd4ae965d2e81217946 . + _:N890e05629e82418daae016ee5930abcf . + "schober@imbi.uni-freiburg.de" . +_:N2847c10d0eb042388a1c5d6ffde69ded "ecyano.rule" . + "Geographical Entity Ontology" . + . + "HIP000030660" . +_:Ncb16fad83be449218464ecddbbd11f78 . + "None" . +_:N64bdeccd7c45488297e63bf9d24b5098 "oryzabase.gene" . + _:N19477b0983a147109695bf3211e0b195 . +_:Nab25b703fdcb43f596dc22cb65347ad0 . +_:N42277e7ccacc4b499caceb344bc8b416 "mzspec" . +_:N190da5d0c364409b9e011466fbd8c1cd . +_:Nb38a145bd3a64dee827940918ab21298 . +_:Neafa91395800491db2e362ff2c7563e8 . + _:N46d6f476e520492fbf099bdacf538e9a . + "https://identifiers.org/ensembl.fungi:$1" . +_:N0fdd0d6ca657410396fdef3dccfaea59 . + . +_:N2ebfcd2007f648a2b31f385c3ed0932f . + _:N26e059824d9c4319ba8f360e20cf38fb . + "0002" . +_:N44359ba95db34caf92717ec8faa66d75 "ctd.disease" . + "^PF\\d{5}$" . +_:N45b31a5d5f9a4026926f09580e207b15 "metanetx.chemical" . + "0001410" . + "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results." . +_:N6ebb5b62da3e41f182ce80060bb75670 . +_:Ne0c109e23c3949a187bf6db11e6d9c1e "Araport" . + "None" . + "FR-FCM-ZYGW" . + _:Naced988e6a854c568765acd25caa71e2 . + "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1" . + "https://www.ebi.ac.uk/ols/ontologies/hancestro/terms?iri=http://purl.obolibrary.org/obo/HANCESTRO_$1" . + "false"^^ . +_:N71ffee4e55f64a5c8e58cfa30826c4f6 . +_:N8e626bc42bbb40ce8aadc2472162692a "XPO" . + "false"^^ . + _:N4c5bc540b4bf4dd48674e6c6d2bad1c8 . + "CIP - potato ontology - november 2020" . + _:Nc977f42979984b418fc3efca2d070f35 . + _:N30c70cc8b1764735b0f8660584468e35 . +_:N656e1ff5fb60431e94f638a80bae6a27 "noncodev4.rna" . + "false"^^ . + "HWUPKR0MPOU8FGXBT394" . +_:Na1bbd468397340c1b1e9c55784929395 "OPB" . + "^\\d+$" . + "None" . +_:Nc9ae3f87817144339bfa48bd41b34446 "hom" . + . + _:N6238198377c342e6b92a5629ac801b0c . +_:Nc2abf192253d4c7784675dc8755fa6ea . +_:N815ca4a473924ad99be0ecc01b0e331c . + "http://www.genome.ad.jp/kegg/" . + "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools." . + "Drosophila RNAi Screening Center" . + "https://identifiers.org/minid.test:$1" . +_:N17a29042c93b4657913cbfb3ea0279dc . + . + . + "Thorsten.Henrich@embl-heidelberg.de" . + "https://identifiers.org/huge:$1" . + _:Nc1ca6602dbaf4671ba585c4789055c0b . + _:N20f14c8b012d4622a71bc33191f81a26 . +_:Nf1e2e126374c498c86efba0d07be6da4 "TISSUELIST" . +_:N7a54e1d09fa2401fb2117271fbe5bc3e "ComplexPortal" . +_:N846be59b67e24a69a62c4fa020966359 "CRO" . +_:N0ff15e29cdd74809a823b11a95c704f1 . +_:Nc4894a582f0e4401bc4160cb75add960 . +_:N32c43bc0c40d41999ad2157a9c5b0fdb "CHICKENQTLDB" . + "https://www.ebi.ac.uk/ols/ontologies/bcio/terms?iri=http://purl.obolibrary.org/obo/BCIO_$1" . +_:N6dc88724e5f944e6b3644407aaf9c913 . +_:N2dac40e822694d7bbcfa879e7299dffe "INCHIKEY" . +_:N2ec7786e25ca4f5090642f21b068782c . +_:Nfcfc70aa95fd4d999c722ca18324e671 "ornaseq" . + "None" . +_:Nf3feb006bf1145f4b171b4eda07e6e85 . +_:Nab2880ce604a44538e49d8ecc478966e . + . + . + "None" . + "^PR:P?\\d+$" . +_:N55e505922c42443e8c55c6b970637e81 . + "https://identifiers.org/ttd.target:$1" . + _:N0948ee83ec8a47c7af2463ec95e94fed . +_:N02f0f0c0290f41df94fa06e89978fdac "TreeFam" . + "00050" . + _:N501096689a83414a814a55e4c7ef2898 . +_:N1c843245544c40d2893f436ce8d1e763 . + "RAP-DB Transcript" . + _:N9148dbf2d6fd4b1bb547161cbb512206 . +_:N09dcabf190bc45b98a7c996229f60a49 . + "https://medlineplus.gov/genetics/condition/$1" . + _:Nffb65aab7cff46049bcb3845b7e54a32 . +_:N316e130d0ba04dada83e1847b32c3364 . + "09200010" . +_:N4c014e5fe26f4780bb66c88bd65e921c . +_:N7587e5d1dd104a5ab60d3d3ab253006a "CAZy" . +_:N251f9f99ef554df88d2b662ff04c25bb "ncbigene" . +_:Nc384f38a27f24d7eb13afaa8f27448f0 . +_:N83bb299c24b94eb19b289c9e8582c092 . + "FuncBase Mouse" . +_:N4346551db72549b792b04b09ad0ca006 . +_:N0cecf057b24044c1ac8c6054050427a2 "vipr" . +_:Nc04d65c6d17c4aacade086e676f6ba2b . + "https://identifiers.org/bigg.model:$1" . +_:N8d376c31a4e2430ca2210d512ddcf09d . +_:N766c1557f3c14775ba557ca92c663a12 . + _:N7c62834e9e86429a9e0459bba3434bd2 . +_:N36cda1b7b1784235a72ab25a1d1133bd . + "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . +_:N0752d4e8c2614fb6ad634c5b9759bdf9 . +_:N3ccf71a3353f4ecb992ee3c6216b5dbd . + _:N17f98bd652e340eebc27d3044aeb34cd . + "false"^^ . + "https://dublincore.org/specifications/dublin-core/dcmi-terms/" . +_:N1498a7523e6143ac9448a6e9aa05a86f . + "false"^^ . +_:Nc364ae0ec4be43bc9112ae43016e86e3 . +_:Nc939984fbdd348359bc06b241f94a697 "mw.study" . + "^\\d{7}$" . +_:N9cd84d74eeb34485a1d04e55763044be "co_334" . +_:Nbd77f1cf9f4f4fb2b17641592d0004ce . + _:Nb8ed4b26225547869cd8e00e90427a7d . +_:N4917180a3d7b45f8993bbbae6bf3dc32 . +_:N516e407347ae4749ab2231b04742eb04 "ODOR" . +_:N2c74e6536a7640da9829a1db86b3561c . +_:N162eb5e296a046049ea6203e29c01aba . +_:N52d82bf701a046d29c5dbd5f511e5e52 . + "^CVCL_[A-Z0-9]{4}$" . +_:N39fc3df53c004ad09ee2a5880561db3d . +_:N8853b3e109af4ac6b5ab76115bad8efe . + . + . + "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments." . +_:Ncc49ec63cb0e4549b02b11fe56c7ac3b . + _:N3da480d58f04497a9ea8d2898bbe6482 . +_:N806585aa73de468485660ac890b4f0b0 "ARO" . + "^.+$" . + . + "Molecular database for the identification of fungi" . +_:N7256ea7096f24be392df8d2a45c95901 . +_:N5ec0a2e6e91447a08f96a8135fb6c60e . +_:N498ec71c672c487faf82e641d72ad168 . + "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships." . +_:N9be83a99530440689dc20222cc3137d3 "UPHENO" . + "http://bioassayontology.org" . + "None" . + _:N24eca749706f4c7e8468f5ceb566db37 . +_:N19b3ec8f9bbd49e4b716b7ca8a5b3db1 . + _:Nd1e5e7677dbf47ab94d8547e678d7e43 . +_:N0b3c9abeb49a4d77b36d2b8c31c9f97f . +_:Nea9de07ed76a422bb828c238e7904739 "ASPGD.LOCUS" . + "^\\d+$" . + "true"^^ . + "false"^^ . + "Metabolomics Standards Initiative Ontology" . +_:Nf95c00c8b0b34fff8983bc5c0a83aa01 . + "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI)." . + "None" . +_:N6832ffd9340e48ae9cc2a982c45933dd "hgnc.symbol" . + "^\\d{1,2}(\\.\\d{0,3}){0,3}$" . + _:N61fe46d44a0348b58a178a9d6ac02292 . + _:N365504ed7b3145e99f7cd4d8c7fb6fb3 . + "National Academic Research and Collaborations Information System" . + _:N19d01116c0f54598a775b358304a5a85 . + _:N5f60c22bfee94d1290367157e65d7d96 . + "None" . +_:Nc1ca6602dbaf4671ba585c4789055c0b . + "Ontology for Nutritional Studies" . + "https://sorgerlab.github.io/famplex/" . +_:N0118a94bbb2142ad8c753d1e313066f9 "P3853" . +_:N5a9494b444844343a80c3c967a912b82 "ricenetdb.mirna" . + _:Ne06d395c01a24e829777658a2b7b7534 . +_:N059c0e55a70c4398b9057c67c7b5fee4 . +_:N8983751d697942d98753b640fbef542b . +_:N003db58e80a2489a84da197acb8ad8ac "jws" . + "^ST[0-9]{6}$" . +_:Nc62d38b9a24a4862acdd61927b996ae0 . +_:N1dffa901799642f7ad505d4582b3f537 "polbase" . +_:Nc2bb0c4f3f10404298d7c2d9b38d709c . +_:N3ed8e73d31c04ee8ba0bb30b19e5ee45 "RBK" . +_:N0b3788d004e74875be5786469829ba7b . +_:N8da54c6e2666448d852bc3cbc2df9f06 "unipathway.compound" . + "false"^^ . + "https://github.com/luis-gonzalez-m/Collembola" . + _:N7658294214fc4051b05ad5d5c11d2454 . +_:N721c8924a87a45f68f45ec8eb6308c05 . + "XUO" . + "TopFind" . + "2.7.1.1" . + . +_:N6ebb5b62da3e41f182ce80060bb75670 "SHEEPQTLDB" . + _:Nbfc76ce25aba430c80140ddfbad50d96 . + "J.Bard@ed.ac.uk" . +_:Na06c2dd180014d2094d14168c95c9cde . +_:N53968c86dbd8451e84df728fdb1a6280 "bindingdb" . + "^ENST\\d{11}$" . +_:N6bc4d6b3a8904edd88460f7c01926fe0 "DCTERMS" . +_:N287182f606e54b50abb164de685bbb25 "splash" . +_:N2f06741179c14e30bbc9ebb6d0fce262 . +_:N369f2f3b1bb04f82a3dbc2d819ca57c6 . + "PANTHER Pathway" . +_:N559ec30784d6436d819eb07c2314164e . +_:Nb5fa84b3e1c1458195aee9d749b2f41a . + "^\\d+$" . + "https://identifiers.org/biocyc:$1" . +_:N227633bce6834a9a8ed09b3f5382d44e . +_:Nfe0d784c5d4c4295928021e68388dcbd "ideal" . + "0000184" . + "MEROPS Inhibitor" . +_:Ne56c0dce8aea4948b29cd811236f6b3b . + _:Nf58c09af51144f978859b6c12b9f9ea4 . + "0000029" . +_:Nb9e1130524a7437496f06068c42d61d0 "oid" . + "http://vocab.deri.ie/void" . + "None" . + "CLV_MEL_PAP_1" . +_:Ncdb0dc213bec430b9c64fd9aa2189794 . + "None" . + "http://www.fungalbarcoding.org/" . +_:N35957830ff214770a7298df7b944cf2e . + "^[1-9][0-9]{3,6}$" . + "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences." . +_:N7895364633cd4d83a51bedf952e7314e . +_:Ne49cff54c6fc42f7a2c967cfbc2b4006 "bgee.family" . +_:N6ac2eebe4b21400da1b5973cd7cbd4c4 "NGL" . + "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes." . + "COB brings together key terms from a wide range of OBO projects to improve interoperability." . + _:Nee375e455aa346818ff573edba18cc1d . + "None" . +_:N35087fb7ec79477abf56a36bb14cded4 "myco.lepra" . +_:N251f9f99ef554df88d2b662ff04c25bb . +_:Nd6d1d9333a3044f89652e53000ec71b2 . + "^\\d{7}$" . + "None" . + "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration." . +_:Nf2c239f7e4164a2b80e7015feff4d352 . + "https://github.com/OPMI/opmi" . +_:N1095f176851840d19ae18c45b21225d2 "KEGG.MODULE" . + . + "EG10173" . + "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes." . + _:N2f6cfb400f6e4844a8ee071c612fbe29 . + . + "S7000002168151102" . +_:N7ceeb713ba45458487ed25c7730e032e . +_:Nf133c37b3c6547e69ffc4745c249187e "FAO" . +_:Nc11a35c85ea64cc8b27e282d6d0689fc . + "https://www.uniprot.org/locations/" . + _:Nc4e49c68f91547e1bd952534a656caa0 . + "http://www.uniprot.org/keywords/" . + "https://identifiers.org/epd:$1" . +_:Nd010ae96dead4ca09c7c1057583e0d8a . + "5688061" . + "https://identifiers.org/iceberg.element:$1" . + _:N594fe9b15db241408a1410b03221caa3 . + "https://identifiers.org/complexportal:$1" . + . +_:N4a36bfe9b4da449da41632d19bc227a1 . +_:N4eefe27c74444613823355be9e2f7879 "rebase" . +_:N2516fcf841de4bc5a68b8666452b05fd . + "Terry.Hayamizu@jax.org" . + . +_:N69337b4a0f984edb9b6957fb9366ec1b . + "^\\w+$" . + "^GSSO:\\d{6}$" . + "^\\d+$" . +_:Nb127271f1f94424ba01d9be08542b6df . +_:N095540f9f12247789df5af949bdc1243 "cosmic" . +_:Na621025518924fae95303b47b92bcb23 . + "https://ssbd.riken.jp" . + "Assists in resolving data across cloud resources." . +_:Ne46dea69930a412b845d197b70b80340 . + "https://www.ebi.ac.uk/ols/ontologies/flopo/terms?iri=http://purl.obolibrary.org/obo/FLOPO_$1" . + "None" . +_:Ne4c0c7a02be24cb0b3625787c3e75965 "adw" . + "https://www.ebi.ac.uk/ols/ontologies/fovt/terms?iri=http://purl.obolibrary.org/obo/FOVT_$1" . + . + "Feature Annotation Location Description Ontology " . +_:N9aefc3b2f1e04b87adce08b5cb6156ff "PLANA" . + . +_:N78a37736ae5341579e88dc7b83e18477 . + "^rxn\\d+$" . +_:N9aefc3b2f1e04b87adce08b5cb6156ff . + _:N6d46bd4705634a3e9adc95e9eb432350 . +_:Nca385fd5d04745028ece2fcfc64dd279 . + "https://github.com/obi-ontology/obi/raw/master/views/obi.obo" . + . + _:Nc62deebe6ace4920ab7fba6581377589 . + "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein." . +_:N6754eae8b2ba4eda9f97849935ef7a6f . +_:N86953624bca34ef581b96348b228aefc . + . + _:N259d1b905fbe4583be705da629ca7c48 . +_:N4d1156a1f21d45a9acdd599c927ba33a . + "false"^^ . + "The Cell Line Ontology (CLO) is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns." . + _:N29dc67dc40a9472c89d57743f12ce6ac . + _:Nfbb76729fce34b61ad3b2f3bda2359ef . + _:N583840c8e9fe44b589c1bbb9a75037b1 . +_:Nc38707fed67444a18a6cd121040eb5df . +_:Na4577d31addb44a69c9007cf3b3e5011 . +_:Na4a049dd5cbc49c59471439e68bb54f2 . + _:N88c27e96d1e7473b9d6cfd5020fc65b4 . +_:Na6f9f4c911594efd956e93fed1657efb . +_:Nb0227452710445a1a5790688d5189c6c . + _:Ne5546b34adde42fe9b8f68c875e62705 . + "dsonensh@odu.edu" . + "false"^^ . + "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . + _:Nc4024776fb7648dcbcec67770a01c4e2 . +_:N5a95d797771f46638265f8141b780d04 . + "IMGT/HLA human major histocompatibility complex sequence database" . +_:Nc91fd7bd6b854d3b94e15efba9ad21ec "GO" . + _:Nfe0d784c5d4c4295928021e68388dcbd . + "^\\w\\d{4}\\w\\d{2}(\\-[35])?$" . +_:N9bf12db119ef4c78b2581e756dac52df . +_:N9e2a778e8f70486b93b5f9f11305697a . +_:N02d95146905e47148382c08b8b519a65 "ENSEMBL" . + _:Nf78725e11a2f42f7a98b81f71e307e81 . +_:N408e07ff62814e499b57f01673aebfa9 . +_:N418d2b792918482ba91b8b79b5fc8a87 . + "None" . +_:N8992e8edc9224c6d9f95c5fb1b27488e "GIARDIADB" . +_:N62617277de30484c942f860c2417d016 . +_:Nd7e2d455d09c4dd487ffb79ef633fafd . + "https://identifiers.org/foodb.compound:$1" . +_:N52fa8c08e69140bcb3dfe4ff04213e24 "OBA" . +_:Ne3483c04792b4e808732e2ec9b63eb0a . + _:N3e3eacbc026e4abeb5fd8dd4d92b67f0 . + _:Nbc332be6c7764982b2ad92def6dcf2d8 . + "https://identifiers.org/unimod:$1" . +_:N490899046e6045c5a7b28eb886ea6088 . + "YRC PDR" . + _:N49af0f91565841d28fe38a7d75281b11 . + _:N9ea1d869db4042758a0d2f4c4c8880f5 . +_:Nc0f64d6f9c1c4beab251b8a0f7345f45 . +_:N90e1b6296d3b465fadaa34eb45047a38 "SIO" . + _:N89de4f77b5044c298453d101127661f7 . +_:Ncc18caaa7ffa49969433775f1fab6270 "DCAT" . + . +_:N3eb85224315d47b1b085d8439c0ff353 . +_:Na60bc7f9c104447b8209f39eeff20392 "SIBO" . +_:N706e7bd775eb4012a9c697836b0dc83a "PCO" . + "https://www.ebi.ac.uk/ols" . +_:N0c0863ecb98342d2a0ea0aae41946bdf . + "false"^^ . +_:N45a0727b93e14ca68d98e0daf3a3870d . + "https://identifiers.org/px:$1" . +_:N5d636c0fef24467994c25a000edc8541 . + "^[a-z_A-Z0-9]+$" . + "None" . + _:N4ab45f4532e44b788b0b9064f3a1766c . + _:N587a3a4ef1e14ccdbc48951e248b3650 . +_:N230490758d85400b841195cb7a23a684 . + "false"^^ . +_:N9e72d2843b104ba1b9cb86244f48f898 . + "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database." . + _:N2847c10d0eb042388a1c5d6ffde69ded . + "false"^^ . +_:Nc39ee2305bc345569e6a155bdb84642c . + . + _:N8853b3e109af4ac6b5ab76115bad8efe . + "The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank." . +_:Nb46e8cffe1234a638bb4df81d4428848 . + "false"^^ . +_:N38d68031731b45fc869f30bf863b9369 . + "https://identifiers.org/biomodels.db:$1" . +_:N2e739d579ff54254a1d6400afdb19709 "darc" . +_:Nccb97b0bb0b34133a7cb8392563c34a5 . +_:Ncbecc85381294f758f19a2d6d9303324 . + _:N0d02b88e5feb46a6a1965f09435fc0eb . +_:Nb3e43bdf576a427cbd4f0ae69a61b381 . +_:N149bfa58f3574ba79a7b6099973a76d7 . +_:Nea3cf25557bb4334b39365042bc20b5c "ecocore" . +_:Nb458d227e2304499b8e84fe01d9aa1b1 . + "https://identifiers.org/vario:$1" . + _:N48f78e6d0955474a9e3220fa58c5b55c . + "17165" . +_:Nfbb76729fce34b61ad3b2f3bda2359ef "dbest" . + "https://github.com/phenoscape/vertebrate-taxonomy-ontology" . +_:Nb962958d4f9c48748ef382af8d90adac "ENZYME" . +_:N2b24096c54d84093a7fe2fa856299562 . + "false"^^ . + "false"^^ . + "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc." . + "https://identifiers.org/CL:$1" . + "http://www.cropontology.org/ontology/CO_365/Fababean" . + _:N2a2a08a7b50e4591a31a998ac8561402 . +_:N799e39d2e36247bc8fc90090dd01adde "bco" . + "Data Object Service" . +_:N1aa7ac5978fa4cd3ae8dfa32da19b0d6 . + _:N44b6ee31bf1d4313a6c0cc9e19a59aa7 . + . + "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived." . + "NONHSAT000001" . + _:N11386df2721d409b996eb9fd12a9f13a . + . + "false"^^ . +_:Nddb831a47ae34e56bb4738544ba6e387 "OM" . + . + _:Ned26489a731b4f84ade0bc5e5d9b7b20 . +_:N138b7930fe4d4312b987c113045bf374 . + "UniProt Cross-ref database" . + "false"^^ . + _:Ne83ac43832174917903a4d9e9f020d04 . + . +_:N13c2a7e397cd4f1cb0943fe22845ac75 "epd" . +_:N55807696cb6c40ed88db637f42279b58 . + "false"^^ . +_:N75f2fb47759c4edd923892aa39f5416b . +_:N3d51ddc8573f444c9c4f1d882a811b7d "autdb" . + "GeneCards" . + _:N6dbdb66ec8714ea5a23bb2eda18533a5 . +_:N7ea9597be16240a993aa8f6d364447b5 "gudmap" . + "^\\d+$" . + "^\\w{3}\\d{5}(\\.\\d+)?$" . + "1242" . + _:N1df975d11dda4597b6a52b8655851ad2 . +_:Na709d50f045848419bc52dca22c7c979 . + "https://www.w3.org/ns/prov#$1" . + "ConoServer" . +_:N60270bbe69ae4608b3aa6c251bbf0e0f . + . +_:Nd56a2fd90ec04a45827aa2a730860a67 . +_:Ndb9b7d5b54fe413987b692fe15e9be23 . +_:N22771823a3594304b5bf38d38fea81ae "HANCESTRO" . + _:Nb46799535cbc4649a14552957eaa5d63 . +_:N2da0ea0c31a342d3a56c73b203281715 . + "false"^^ . +_:N2b23a8ecbed54a35b3e9bb60fadf0819 . +_:N16120e5ec53343c2861916d342a1e316 . +_:N05d7983d1b2a42f785a4cca5cd36416f . + "^PA\\d+$" . + _:Nddba05267b594856873311d52b838059 . +_:N9b6e5dd4c2a243e6b2f8eec3a37bb207 "eo" . + "None" . +_:Nb952f46674e541c2a9ab1e56dcadc022 "ncbiprotein" . + _:N7e97240b25654edba58510586a9ef7d6 . +_:Ndde711597f0748f6b22cde7a6273c942 "P3636" . +_:N1bdb3eee7f384195a54508956df78ec8 . + "HGVST1828" . +_:N5af6e26210c2493eb9d685a4d581fc25 . +_:Nd09bce1b99064c489237ba0ae1e539c1 "MESH.2012" . + "None" . +_:Nd6c0193ccadf4addbe15603e1f4b0eb9 . + . + "false"^^ . + _:Nda63fcc2e6b64682810c3f395079a01a . +_:N2516fcf841de4bc5a68b8666452b05fd "ricenetdb.mirna" . +_:N5def2c8ffe9e418e9d900c3ce6c073f2 . + "false"^^ . + "MM00040" . +_:Nf4bf294da0824f849f6ad26e82e04678 . + . + "false"^^ . +_:N7c0a5be67b964aeb90114c3d5dc0c0fd "sider.effect" . + _:Nee2e749a53b54ab3866c5bd75e203649 . + . + "https://www.ensembl.org" . + "^(\\w+)?\\d+$" . + "PASS01237" . +_:N4a964e50e172432499244a2a656473a4 . + "^\\d+$" . + _:N19b70b870e834ec3afc92c956683c43f . + "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode." . + "DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature." . + "45539" . + "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$" . +_:N7ff5e27c39a9477992e64f1edc9ff65a . + "0000634" . +_:N0454325ce9ec44b1a18750de59970986 . + . + _:N59c2caec69b947628900e847a437ef3f . + _:N8ecf4bd22f64462f97cfd81781346d37 . + "http://rna.rega.kuleuven.be/rnamods/" . + _:N4e6ab83244aa41ceb5181fe1bfffd0c0 . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$" . + "Japan Consortium for Glycobiology and Glycotechnology Database" . +_:Nbdd2014d1c8a47a8aa7cd4921d40f5ca . + _:Nf951eed99fcd4930a20aa42e4070f3a1 . +_:N7f3fb7ccf01143759739311dc0318cea . +_:N299381a71bb240c9956e7c18d79c2c52 . + "00001" . + "^[A-Z0-9]+$" . + "MassIVE is a community resource 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It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. 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It is intended to be complementary to the Ontology for Biomedical Investigations (OBI)." . +_:N2a26e73621444961af1cf61b3dde7155 "BIOCARTA.PATHWAY" . +_:N85704ef5c0f643b1a599f6364496ef37 . +_:N8ade180670884c63abca270e77476d2b "fplx" . +_:Nb70186fe0e4a4c7395f0c3d041810346 "BTO" . + _:Neab770d14ead4d9daac0697903df97bf . +_:N773f189b13954bf4a38aed85d9f11402 "pirsf" . +_:Nb59b8523035d4e6fb2f1f15ccc2c0953 . + "OUYCCCASQSFEME-MRVPVSSYSA-N" . + "^\\d{7}$" . +_:Nfd8b074be9a84f5eae130390bea499ef . + _:Na0c0789644994b33a0a16a5fcb09e185 . + "https://identifiers.org/homd.taxon:$1" . + "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs)." . + _:Na88e7dd51d0144fc996c0713c7e206ab . + "https://identifiers.org/supfam:$1" . + "^mge:\\d+$" . + "3G6A5W338E" . + "http://www.mycobank.org" . +_:N39fd177c704b4bb596d720ce17ed5704 . + _:N79f9c5ca81ec4a09b46152ba3676db08 . +_:N21ce3a3785de46b79a1761d78fbbf1ee . +_:N9023b95ac1444ed296f0750dfc9462a0 . + . + _:N49f8f3eb8eb04d1cbba747872e4b8b5f . +_:N2a46b4ab9e0040e6aa0b68e660536386 . + "0000001" . + "FuncBase Yeast" . + "false"^^ . + "https://identifiers.org/cath:$1" . + "false"^^ . + "0100002" . + "false"^^ . +_:N7783f44a6d784105ac75d3f824fe461f "RS" . + "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level." . +_:N8758777af13d4381bbc52f376fe3a4cc "NIAEST" . + "Terminology for Description of Dynamics" . +_:N3ec9d1a679fb4a678e53ece4193419c6 "obi" . + "1001" . +_:N9194d61945c14b6b8c969daabe1f050c . +_:N73a0d744f49540c9bfc86b861b99100e . + _:N45c330cc1d1248c0aa1185e22abc8b14 . + "The Food Ontology" . + _:N3cddf45781764a06908b6052b771c7cb . + _:N0b700b0c63084c0ab59ffa6edfd8a7f4 . + "Ontology of Physics for Biology" . +_:N187829e6013f42abb745c5d1914e8799 . + "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$" . +_:N68022e2b731d407e91d3ed7aced722b0 . +_:N0aad24f38df746f89f2df1efafaca908 . + "false"^^ . +_:N48358444510c4641bb66d3246ae30b9b . + "None" . + . +_:N59d9c3d1ec0c4b28a58ffad08fce0e43 . + "https://www.ebi.ac.uk/ols/ontologies/rbo/terms?iri=http://purl.obolibrary.org/obo/RBO_$1" . +_:N782b62903ec14d7e9e2c9d8e07580edb . + . +_:N9c85fecb71094fc2891b03a3e5bf98e8 . + "https://identifiers.org/iao:$1" . + "false"^^ . + "TarBase stores microRNA (miRNA) information for miRNA\u2013gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used." . +_:N357661de6fa94352b274ec2f68208c23 "co_331" . +_:Neea47e0bb1974a4c84091ad820e4560f . +_:N28209c73cf5d4bbbbae27de9cdbef703 "AEO" . + _:N8758777af13d4381bbc52f376fe3a4cc . +_:N7fa67ed4257b4cccbae45e610131cb80 . + . + _:N5b40088bb4c84b159df3e269fe2bb76b . +_:Na621025518924fae95303b47b92bcb23 . + . + _:Nf820109c6cef4fb0b1d2a628865a317a . + "None" . +_:Na52578e1c85f4c6988b65ba13ddf0a22 . +_:Ne46dea69930a412b845d197b70b80340 . +_:Nb8b60dc00e9c4a729e546e811c6cc1ff . + _:N7d91c9d8b77f4506a09b6f999f6388a9 . + "None" . + _:N6b8b9d899d6749b29e6dbf371dd5ff31 . + "https://identifiers.org/pass2:$1" . + _:Ne3e681233b06478c9387b472084661dc . +_:Naaffb007f49a4cd2a6dc15f3f733c296 . + _:Nfcc7f2094e974d4683567c1d2c3c3da9 . + . +_:Nce0a1fd61c1348f4acbf73e64012b461 . +_:N2c037deb82184158beab989d8dd0101e . +_:N60270bbe69ae4608b3aa6c251bbf0e0f "mirex" . +_:N7c8b179998df4e85b5c5715eaa881c02 . + "false"^^ . +_:Nd6466d84cb6f488483fc7e14a2b4bc38 . + "https://www.ebi.ac.uk/ols/ontologies/fideo/terms?iri=http://purl.obolibrary.org/obo/FIDEO_$1" . +_:Ne622fbe53310440e862f54ca6fdde788 . + "Hypertension Ontology" . +_:N0d77b167161240d098f55b5f1bf7ae4a . +_:N164449f86942404a8e5af733514cf7bf . + "1.10.10.200" . + _:N057de2c7e82f4cb8bbdb0b4afae0f631 . + "None" . +_:N2d3e1f672f7a4127aaa8f9cd82592ae1 . +_:N5339f4621b7647b19825fd1287161cff . +_:Nf78725e11a2f42f7a98b81f71e307e81 "Wikipedia" . +_:Na07de80a99aa447eb45fe60ce3ac2625 . + . +_:N3d3049473b1e41c998ee2acbef8b5ab8 . + "0000109" . +_:Nb57dca6e55fd4c9ab697c757887499a8 . + "https://identifiers.org/peroxibase:$1" . + _:Ncf6027a0d37246fcb2ce39e666aed170 . + "I31.952" . +_:Nbc332be6c7764982b2ad92def6dcf2d8 . +_:Ne6b18db105c74a33b4472b8d24f4a638 . + _:N487d8b81347940b8a6b4cfdd917cdb52 . +_:N0c8377f52b33454d8e9ae2056a3d5f81 . 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"https://github.com/MPIO-Developers/MPIO" . +_:N1c4b9df7d2f8461cacd3e6a44c49b9c1 . +_:N42a644e3618943479ccd4f22e014aa78 . +_:N0c0863ecb98342d2a0ea0aae41946bdf . + _:N8df5f0e08e894cfc9805fabefaa3faf1 . + _:Na647065ea51f4a0eab7eab047f150d01 . + "0001807" . +_:N51cf4fc7cfda46acaab75ead6f264fe9 . +_:N60bdb6f62c914c2688809b8c0ed4d0c0 . + _:N592777f3f0ab4ae0918e5d9cedfc8b80 . + _:Na3b75452a5ac49758dec821b312527dc . +_:Naced988e6a854c568765acd25caa71e2 "NBO" . +_:Ndf972beb78f941589f1a64e1ac016baa . +_:Nb06e9a84c22f46e2be84c09d24258bea . +_:N9e72d2843b104ba1b9cb86244f48f898 . +_:N36b3d242eeca4ecc80248c4408cdb016 . + "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens." . + "None" . + _:N65e3223d2977407b892f41e3a94709cd . + "None" . + _:N95629e14906b415a871f9ca8b066dddc . + _:Nb82b01fb16bb46749b8023e2cb55a3f7 . +_:Nbee52ce82174462c8e862d934ba961c0 "sepio" . + _:N1d5138d4d40d4ada821c956b353c5c14 . + "10087" . +_:Nd9f28dc9542d407c931e6459f926e797 . +_:Nc1255560ac2b4bf8843037f1a0e5d18c "GR_QTL" . +_:Ne3c2eba9f0874b7da11bf6f883171efe . +_:Nc7903b5546e0452da031f8e946a232ea "minid" . +_:N89de4f77b5044c298453d101127661f7 . + "false"^^ . +_:Nbae3f946f2434e309dc600ffcb974186 "MA" . +_:N2ef728d3e97149328e3d5cbf9da2fe65 . + "CUT" . + "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available." . +_:N43ba2ab1a23840ac90812c12b47d746f "OHPI" . +_:N9cea9c81be6f4e299f214541794b6fec . +_:N0776bdf4abaa4e0f9f0dfc2582643dde . +_:Nb313682f943d4b84a9b2e65bf297a7e2 "metanetx.compartment" . + "uniprotkb" . + "https://github.com/obophenotype/chiro" . + "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis." . +_:Nc38707fed67444a18a6cd121040eb5df "tgd" . + "false"^^ . +_:N2ec7786e25ca4f5090642f21b068782c "pubchem.substance" . +_:Ne7d9e9b1cd8a47dc8f09566b09980b3c . +_:Na60ac262074b43cd93ea082f3089d969 . +_:N7171b6fee26943ca941e38c075dfa824 "mimodb" . + "NCI Thesaurus" . +_:N3d69e158c0b846178598c77bc9005ac3 . + "http://genolist.pasteur.fr/SubtiList/" . + _:N21b9d586a4b1492db5faea1880a4cbd4 . + _:N1729355bb1134c17b527435d7ac2aee5 . + "saddan" . +_:N3cc2e970f3fb43df83ebf6a9378e9c63 . +_:Nd5c3d254d70f4071ba4c305fd5587cc8 . + _:N66aef776d24640c28d93ca52d10b326b . +_:N062fcc6442d34416834508977b8fcda4 "molbase" . + "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions." . +_:N45c330cc1d1248c0aa1185e22abc8b14 . + "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome." . + "European Genome-phenome Archive Study" . + "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources." . + . + "SFB_COVID19_MW286762" . +_:N0d2228ebde684837802eded67aca3402 "EV" . +_:Ndf5f55b512144bda9b29b6997dd869d2 . + "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets." . + "International Geo Sample Number" . + _:N6261bf3c7aa04edfa9f2c1dc5fc91c95 . + "Viral Bioinformatics Resource Center" . + "Global Research Identifier Database" . + "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment." . + "None" . + "^\\d+$" . + "^KISAO_\\d+$" . +_:N560685b9f7fc424c9431c313d33289ae . +_:N49fa65d3fcff42babbae7af9851fc241 . +_:Nad3c10d3c43845bd9c3c20e0c7909af7 "PEROXIBASE" . + "false"^^ . + "^EMD-\\d{4}$" . + . +_:N77962d865c434b5f93bd4e7f1d48ecb9 . +_:N13423f5ab2ac4318bba91218e3efafd3 . + _:N5ec2840aa17a40698f6bc2d3dc490408 . +_:N6ead570fb40845d2925ac14610fe88cc . + . +_:N3a28ae1712df4fdb936c71a299ed914f "RGD" . +_:N4ab45f4532e44b788b0b9064f3a1766c "GLYCOMEDB" . + "WBRNAi00086878" . + _:N1fd1111641264ea08a7d88260d4a5b52 . + . +_:Nc4c3cd43a9744c3fa62b2b1ecab9c38d . + "https://identifiers.org/ricenetdb.compound:$1" . +_:N3ad59e42043d4cf88f9a2ce1b9b6f16c . +_:Ne8e6b92a357d4087a11314b6fc56b6f0 . +_:Nd3d5ae4fc1a6417f99c73b660e89f348 . +_:N52aa22a0bbda4d4f920831f665516a1a "fbdv" . + "None" . + "None" . +_:N39c12bd8213f4679a51b36052b241bc5 . + "HomoloGene" . +_:Ndb791e987bc74ca1a2d1c80cff67dabb . +_:N8e5705c270194747a0acd2c2fffc3625 "PROTONET.PROTEINCARD" . + . +_:N67d2c4575be7452884a26b5fb1a343f3 "PEPTIDEATLAS" . + "http://www.cropontology.org/ontology/CO_324/Sorghum" . +_:Ncd18f693071b40d2a3f73fd9a4823ed9 "APHIDBASE.TRANSCRIPT" . +_:N7be786ea70a241c1bf175ac3166cef23 "PLO" . +_:Nd849113afde645248d41158576bb41f0 "CLYH" . + "https://identifiers.org/emdb:$1" . + _:N345bf0e665af44aa9d997429871df789 . +_:Nb8ed4d6fc4c64439bcb715ec59c5494e . + "http://www.genome.jp/dbget-bin/www_bfind?enzyme" . +_:Nc39ee2305bc345569e6a155bdb84642c "sider.drug" . + _:Nf6dc5a9f76ee4d8186030f8bbeccfb7d . +_:Nc59ee83b922f43b4a0f1f355f733086f "DIDEO" . +_:Nbee52ce82174462c8e862d934ba961c0 . + . +_:N3ff9a01e88414db5bea577f38cb28492 "NCBI_NP" . + _:Nb0766858001b44369b7a96e7adaef53d . +_:N1dac12f89e0f45099b56f4ba279b498a "encode" . +_:N239e103147e1414ebc05120c3a4e9d17 . +_:Nc7621a43627f4ff6ba338a5573019cf7 . + _:Na874cdfca1ab4ab9bb97b82ed7adc1c7 . + . + "bgee@sib.swiss" . + _:N09a4c8d5cb3e45c1ad495f3d3ee16692 . + _:N29c2adfc8ce743cc87e4e458cd271659 . + _:N48a2099964e74bbaaf167dfb18fa9f59 . +_:N878adb9451f5450e859da6fe14955ca3 . +_:N01543268fbc449e4909f8c8e2f8ac234 . +_:N46add195817a49598aaedcaed4274071 "ORNASEQ" . +_:N5131b01dad7345f3ae0a2019463051b6 "envo" . +_:Nd073311cf4454cd696b551668b987a1e "ecogene" . + "UM-BBD Compound" . + "Lentil Trait Dictionary in template v5 - ICARDA - July 2015" . +_:N42267f8133d04a73bdc60b855971ba27 . +_:Ne89b15d47a704a3aade69182927b50c8 . +_:N48239933b788424c86c5e26b30a9d66c "opm" . + "16941567" . +_:Nb73f04a5fc6c4d27a6807072bb7a6c04 . +_:N05d6c3d143ad4fe2a60d93103a713031 . + "RNAcentral" . + "None" . +_:N17cb84b0e5c741f5aa79303d9ec2f33c . + "None" . + "https://identifiers.org/mmrrc:$1" . +_:N8510b6616ffc47799cf8972ec149945c . +_:N63a72a294af4458397dba597e2895721 "umbbd.pathway" . +_:N9a255964ada54c21b51418592306ac2b . + _:Nfa62ef6bc8724e63809573c3c334a48f . +_:N4326544dcfe04c94b14b5b5399b843fb . + _:Nb6eef29bb1924ca9a085eb3051c0da0f . +_:Nfab8239ec9044300bbb6b5d77f60f4a5 . +_:N62a7fe4e510542dba8b2b54c9c374a31 . + _:N3db9de85e23a4630a6de196c2d3eec9b . + _:N3404232e07da4db19cbc18633d5daeb7 . + "false"^^ . + "Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo" . + "None" . +_:Nc28c7af3c1634cbcbf197adfefa02c7c "HOGENOM" . +_:N659944b8038a4e7489693ca17d7c2dc6 . +_:N2a6871f92ed943978814a222c4c11db6 "paxdb.protein" . + "false"^^ . + "https://identifiers.org/MZSPEC:$1" . +_:N90bc94e42b974917bfe4fbf08a37c220 . + "None" . +_:N22dca894660a4e458bd02ad1da2e2630 "merops" . +_:Nc90e9b135bed424a8421c3e24628d8ab . + "https://identifiers.org/merops.family:$1" . +_:N1df975d11dda4597b6a52b8655851ad2 "pmdb" . +_:Nf56303bf62b344ebb78e07074d3bf902 . + "eggNOG" . + "None" . + "IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents." . + "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism." . + "None" . + "None" . +_:Nd9cdfe549b604244a33fcab16fc4b028 . +_:N7447f17e798641e18616d6fa31d1e4b6 . + "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process." . +_:N5897728f36b14220937df223f31ac564 . +_:N51ebf49827934f618b5e721aee4c13ec "EU89H" . +_:N2ea63690ee3c4421bbd531c45e80b777 "tair.gene" . + "false"^^ . +_:N936215f1111b45ffb7debc03f20f6aad . +_:Nf35b27a1d543449180b4aac7e8f8c1be . +_:Na0c0789644994b33a0a16a5fcb09e185 "GPMDB" . + "false"^^ . + "slarson@ncmir.ucsd.edu" . +_:N449bcc3858d1470fb174be7c15f20575 "NOMEN" . + "^\\d+$" . + _:N19b3ec8f9bbd49e4b716b7ca8a5b3db1 . +_:Nfed4de3661b84648b10daf36aa6283d5 . + "^\\d{6,7}$" . + _:Nef04b86438174a12b6dff350264aace3 . +_:N6ff3e81989194bc2944afcea6dd3c20c . +_:N5d5b5652f2234437bf8cedfd310b4c51 . +_:N36a0aeb09dd9421098355d105ebe5685 "INSDC" . + _:Na12e30c9b66b4efeaae27eab15426548 . + _:N9b125052071540008908f2259114dfb8 . + "PeptideAtlas" . + "^JCGG-STR\\d{6}$" . +_:N5752f4045d874cff90fecee9ac78bfba "GO_REF" . + "damion_dooley@sfu.ca" . + "false"^^ . + _:N3ac4ecff269f47d299609dab38f43cb6 . +_:N36b3d242eeca4ecc80248c4408cdb016 . + _:N79efe7393aec45938e428ecb904a004a . + _:N7830bf9fde194237a9d1c4f0c627fc12 . +_:N259d1b905fbe4583be705da629ca7c48 . + _:N490899046e6045c5a7b28eb886ea6088 . +_:Ncf36da17a8df457fb7b67b1004112d67 "edam" . +_:N1f768234d8a04057a7c0dbe7f5226a21 . +_:Ndaaff266250c4fde9e96fde8ac2f11e0 . + "https://identifiers.org/unite:$1" . + _:N85401b5a825e4d9a994b15b50540cfaf . +_:N7e5174e78782421c9a665062df0095a6 . + "false"^^ . + _:N1114af658b8849c7bcf120b9138f9262 . + "International repository of Adverse Outcome Pathways." . + _:Nbed33e436062464fa66762d822a9898e . + _:N51540ec53ad5463ba6662f8e04111906 . + _:N79693732d92648c286a0e15e2ef76de6 . + _:N8556a1dc378c4711b9f51efd09ca87d5 . + "version Dec 2019" . +_:Nfc5d39f6f1d4418dbfe0e0cc03d5a0ce . +_:N6d2a02f923b247fa85f6bcfb0fcec18f . + "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories." . +_:N267178e4554b4807a2d5b9e085eddb4c . + _:N8fda8622a27c4aff8eb4d686ccfaa1e8 . + "https://www.ebi.ac.uk/ols/ontologies/co_365/terms?iri=http://purl.obolibrary.org/obo/CO_365_$1" . +_:N76c7b663427943f9abc4670955b376a2 . + _:N501d0591b002410786e4ea0e2c11b44e . +_:N945b9472bcf34f6b8d9500b340c0b5e2 . +_:N78520561e09e4916b60c464a80ccaf3c . +_:N56bc08278d364f4192fe6ce4b2103c50 . +_:Nd81a4dc4e732489f9ffc3d0554cc67de "dragondb.protein" . + "3355" . + _:N6eabb81ff742437bb362085121372aac . +_:N88dce4ec04da4328934d6b2032341c2a "TAO" . + "false"^^ . + _:N6aa6fd3b42bd4dbfb55bf279cc23afb1 . + _:Ndfc7ada3dcd94964906539f710708cf0 . + "false"^^ . + "DICOM Controlled Terminology" . +_:N85291fbc09af40949d57534ecabedeea "APID.INTERACTIONS" . + _:N18961230ca284e4397b1951cac5fcdac . +_:N184226fd74be4ee2aaae8f86fe3d1a56 . + "^S\\d+$" . + "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union." . + _:N5755216235294d71a513e934d74787f3 . + _:Nc214d271b9674572bb86e0e0e3c1ae1c . + "None" . + _:N16f9f38ef51b47b7bf680db307532bab . + _:N07af36cc7c874f8c9a1b7accbb1818ef . +_:Na5e3b91c1b4b4bf2b1a594967966d259 . + "https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1" . +_:N4442d33de0b64131a04b90b8899950d6 . +_:N1e81e4602e914b48b428fe5ca302bd86 . +_:Nd8101bb6e7a1478ca1229f7b56576939 . +_:Ne5546b34adde42fe9b8f68c875e62705 . + "https://identifiers.org/biosimulators:$1" . + _:Nd5e5dfd1972f4609bbc5e5d4466b2935 . + . +_:N07b7b653658b44a7b5cdeeaaf9834677 . + _:N2e062a7e9b1742b1881527d05d3e404f . +_:N6c457077e66348b3a57a181fdc0fb0b0 "CAID" . + "B00162" . +_:N40a05f22345d46b0b0a3860ef15b96e7 "SPD" . +_:Nb80cff7db3cf40eb970bd79eba460b40 . +_:N42d9ca43b05846e7911a66cb21d20a84 . + "Terminologia Embryologica" . + "MHC Restriction Ontology" . +_:Nbd53ca73eb664abf8da830c589cb156a "GENO" . +_:Ncbd165bcf0df42b5b764116ce5448d0c . + . + _:N425f3ccf7e2c46f6abf9a54e5a480ef4 . +_:N2c7fd03289e540e9a540be779561671c "HPA" . + . + "false"^^ . +_:N647202dfb0164e4fb092136b1a1e144e . +_:N7b85e7388a4944d9aa156b592868faea . +_:Nec8dca041d08498c9316f38f7d0eaaed "genewiki" . + "Medical Action Ontology" . + "None" . +_:N3ed497a648f34322a3a34beb80ab40d3 . + "oai:cwi.nl:4725" . +_:Nd9415648a82b4e3e82c88bb6a567a7d7 . +_:N522c4816083a4b169781ab723e4906d8 "QUDT" . +_:N415e0be562474c10b0e26b9c0d842a64 . + _:N267a71fbc3c4488aa9a798d65281fe90 . + "false"^^ . + "XML Schema Definition" . +_:N021698e78a8446c5b0973d9be5dd7375 "cteno" . + _:N059c0e55a70c4398b9057c67c7b5fee4 . +_:Nf86829b0e2da4d788290d4ee9a379008 "drugbankv4.target" . + "CALM1" . +_:Nb4d85046409e4c6c84822aba4f510142 "insdc.cds" . + _:N26c0e60ce03949ddbf809b2a81c5fb5c . +_:N2aaf26fc444543c2bce896245eec3de7 . + _:N253c7a7c5cf749529e8033085ee32e4f . + _:N5141597c30e9445187619b40776aaa75 . + "Regulation of Gene Expression Ontology" . + "^\\d+$" . +_:N41e4c000c46c49368ce1d19e9ea20d6e . + _:N73db0f2500494390aed18d8bf53dff4f . +_:Ne0d58ea4554f4334a4a27cfc6fe0ba13 . +_:Nf5270839eb284d4a917f74f639412949 "BIOSYSTEMS" . +_:N6a1ef76f4be248d4b33f222268ad117b . +_:N5d7ac630d1024e1f8c001ff0f4861ead . +_:N5a4550e9664c48a79de9ae513dab2e66 . + _:N4a7bf760b6db4d1ba3355fa3fa5ae99d . + "false"^^ . +_:N815ca4a473924ad99be0ecc01b0e331c "sabiork.kineticrecord" . + "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences." . +_:Nbbc212293c174933abac640da15960c0 . +_:Nd04d0d87761c4c4181a5b3d58ebaf355 . +_:N7c53635044124c04ac1d3482c1b9584d . +_:N8da54c6e2666448d852bc3cbc2df9f06 . +_:N3c4c438bbe504c8b999f6da1ba03a3fe . + "None" . + . + _:Nf4a90a0c4bb545dcbfed5eb502003388 . +_:Neae9fba37c15477abf9cd02d4776e841 . + "https://identifiers.org/ensembl.metazoa:$1" . + "None" . + "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data." . +_:N9a255964ada54c21b51418592306ac2b . + "00001234" . + "UPC04349" . + "false"^^ . + _:N8730ffe23764496b94649f3643c13ca8 . + _:Nf58b7ecd91f144f0ac534ed175191d80 . + "false"^^ . +_:N5abb71e526df4844b17eaa97cf83c0fd . +_:Neeeefb73d6a4438188c038d826624fa6 . +_:Na9ac292012944664887b4ab7b51978db . + "None" . + "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions." . + . + "MMP3312982.2" . +_:N4626faaa39614292a77559733c1815f0 . + _:Ne468082d34f940d6884454c6356e0d25 . + "Statistical Torsional Angles Potentials" . + "http://www.obofoundry.org/" . + _:N39feb38f4a6c492eab4d9a3de038671d . + _:Nd90314d82fbe4893855788a96f7d5324 . + . +_:N8bb4b517eff642769334931eedc89a0d . +_:N495837cceae144acaef59aa48f0a4ce9 . + _:N3c06a7d0a6f54e3f940146e2f1ddf077 . +_:Nfe0e662e1c00431eae76bbdea7b0ea43 . +_:N3f89482dbae84bc4b2255ea879614575 "noncodev4.gene" . +_:N809c3ab6cfc6451ca994fcfbb2525c24 . + "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use." . + "https://identifiers.org/addgene:$1" . + "false"^^ . + "https://identifiers.org/pombase:$1" . +_:N2979938d7b634a3a9e1a59c1f253387b . + "TB2:S1000" . + "NeuroMorpho" . + "Protein modification" . + _:Nd86c77ebeddf450d80d7e3afe63512a1 . + _:N7e5174e78782421c9a665062df0095a6 . +_:N6b70dee5422f49a9b89cc06cab793bb1 . + "false"^^ . + _:Na8eef67650b0413c90e64bd79158af6e . + _:N728a5511f3124f91996843d10a0616d4 . +_:N759ac3708e3740aaa9ade081a84f3fd7 . + "BioCyc collection of metabolic pathway databases" . +_:Nc66b5b8d00274f79b830ae2a632fe46f . + "^\\d+$" . + _:N26e172894ff04af3bfda4b79688d7f12 . +_:N66ffbd2eb58b4091b64018f40b99b3d7 "lincs.data" . + _:N5b90f6783d394007aeb0511b376f7db2 . + "true"^^ . +_:N553dbee5035941fcbcdc18cc12e4652f "VANDF" . +_:Nbb1c87d6d6dd4053adc837ab25f64cc7 . +_:N9030a1777fe14c53a6faad91e1a0fa53 . + "BiGG Compartment" . +_:Nc28463b3f2244e5b815e32109b5168a7 "MINT" . +_:Nea8980a82f2a49b5b82c90dbbe2ff881 . + "https://identifiers.org/crisprdb:$1" . +_:N5751b1490fbe4702addcafa52560b1a7 . +_:N4e32f72347d84aad953ed9aad55dd302 "prosite" . + "UniProt Keywords" . + _:N0b0d6daeebea460f8ae0eb74db3df685 . + "^\\d+$" . + "http://www.cropontology.org/ontology/CO_334/Cassava" . + "Molecular Interaction Database" . +_:N34a8b7976d32494093310fb70462f9fc . + _:Na05b0043c1bf41ac91143f828e1b5da2 . +_:Ndf7e26d289e041c2abb04859975bee27 . + "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples." . + "None" . +_:N0f35ee7982034b658a0e32b16ac8a16e . +_:Nb5fa84b3e1c1458195aee9d749b2f41a "P7001" . +_:Na0bdfa4a175f44fa9e1fb8952f242f54 "PLANP" . +_:N7a104434d8594448bc6a6f8a33962a47 . +_:N06c772676df14768963317c03d1038c0 "P4317" . +_:N2feac3e5a038471fac5d25e3cb0aebe6 "ATOL" . + "cpd15380" . +_:N164449f86942404a8e5af733514cf7bf "P4537" . +_:N9a255964ada54c21b51418592306ac2b "CCDS" . +_:N30373bc4d6e04750b86d54f1364cfb56 "mirbase.mature" . + "http://si.washington.edu/projects/fma" . + "true"^^ . +_:N659944b8038a4e7489693ca17d7c2dc6 "PORO" . +_:Nc5f4f99e79ed47509ab2540347b4ef1a . + "http://www.brenda-enzymes.info" . + "false"^^ . + _:Nc15d9bfb7f7e4d76bae20e42a424f22b . + "None" . + _:Nc98438c4c98941a28563da307811cac7 . + "https://raw.githubusercontent.com/biolink/biolink-model" . + "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence." . +_:N542393045dc547798b7494d2c2b1c2d9 . + "None" . + "https://www.ebi.ac.uk/ols/ontologies/co_336/terms?iri=http://purl.obolibrary.org/obo/CO_336_$1" . +_:N4c2661c39dd64bcca13c951a8ff9b9d4 . + . +_:Nb1460160128b4e8f9af9499a6a28079b "SOYBASE" . +_:N17b7b5f8bd8e48fd8f1121a44348d89e . +_:Nd1ef5287d43b4735b089f37bfbcbc8c9 . + "false"^^ . + . +_:Nc7621a43627f4ff6ba338a5573019cf7 "PSEUDOMONAS" . +_:N7e32e1ed31af4026b082674d7e02f0fe . +_:N9c85fecb71094fc2891b03a3e5bf98e8 . +_:Nc19f91f0bdb94508bccde79baf337948 . +_:N21554d741939497fa923e6df43ec405a . +_:Ne0c109e23c3949a187bf6db11e6d9c1e . + . +_:N4049d50a136c4f3198f6f2f5eef93b3a . + "https://www.ebi.ac.uk/ols/ontologies/spd/terms?iri=http://purl.obolibrary.org/obo/SPD_$1" . +_:N8c193499523840e895defc956b3bf4a2 . +_:Nfb40b6fb213c40fda3dcc568487f9046 "MMMP:BIOMAPS" . + _:N71c29ee7a7a1443082ee2478ac524d87 . + "Each OCI (Open Citation Identifier) has a simple structure: oci:number-number, where \u201Coci:\u201D is the identifier prefix, and is used to identify a citation as a first-class data entitiy - see https://opencitations.wordpress.com/2018/02/19/citations-as-first-class-data-entities-introduction/ for additional information.\r\n\r\nOCIs for citations stored within the OpenCitations Corpus are constructed by combining the OpenCitations Corpus local identifiers for the citing and cited bibliographic resources, separating them with a dash. For example, oci:2544384-7295288 is a valid OCI for the citation between two papers stored within the OpenCitations Corpus.\r\n\r\nOCIs can also be created for bibliographic resources described in an external bibliographic database, if they are similarly identified there by identifiers having a unique numerical part. For example, the OCI for the citation that exists between Wikidata resources Q27931310 and Q22252312 is oci:01027931310\u201301022252312.\r\n\r\nOCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings." . + "0000690" . +_:N84aaee18a17d400dbb48b115579ed563 . + "Glyma0021s00410" . +_:Nf03c55fac7ee41789821f227e4ed8a30 . + "NeuroLex Anatomy" . + _:N135138374f76493b853f3fac24fb9305 . +_:N511a34bdceed411c945075563d11023c "BMRB" . + "None" . + "https://identifiers.org/hpm.peptide:$1" . + "^MTBLS\\d+$" . + "M9861/3" . + "PXD000440" . + "https://identifiers.org/begdb:$1" . + . +_:N3d69e158c0b846178598c77bc9005ac3 "signaling-gateway" . +_:N84335ac5b5f54980ae1bcccfff340f6b "ResearchID" . + "5601141" . + _:N172e9923a2064c978fc42ba3b1f3217e . +_:Ned26b5c664664ed9a4bdc0bc7298c4ec . + . + "https://identifiers.org/mamo:$1" . + "Archival Resource Key" . + "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project." . +_:Na96b4e5161ff475881f33023e1879319 . + "None" . +_:N77620e69420a4f41849a55fb9d1b28f4 "RFAM" . +_:Nec45299bc1e54f3c8bf8982ee5c7d22e "IMG.TAXON" . + _:N9023b95ac1444ed296f0750dfc9462a0 . + "^[A-Za-z0-9_-]+$" . +_:Nab527ea683a54679a8e53c991deae608 . +_:Nded113b7b9344ff5812d3aca79d5c320 "gpcrdb" . +_:N062ea13b48f84a4d90c5b64906161329 "genatlas" . + "http://www.cropontology.org/ontology/CO_340/Cowpea" . + "Informed Consent Ontology" . +_:Nfbe6d559c85f45e7b590f21defea7db5 . + "None" . +_:N5dd40a9dfe234ba685da08cfdb795448 . + _:N798b0047b2604fcba86c66560a9608ca . + . + "https://identifiers.org/pkdb:$1" . +_:Nf68d350653f841409286d87c9ce82589 . + "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects." . +_:Nfdef520f28ca4baca722eb3c5b8da1f3 "go" . + "https://identifiers.org/pubchem.bioassay:$1" . + "false"^^ . +_:N55efb6909c634de3a7947cca14960121 "MMUSDV" . + "BioTools" . +_:N2acae0a97d594b03bdee5cc83ceb7c39 "MO" . +_:N131f6f5e08fe41ecaae9f74fb8cb9710 . +_:N55108c393e2640b0b162c2d00f54faf7 . +_:N71ac685141744792b168de63c2609c13 . + "None" . + "https://identifiers.org/vegbank:$1" . + _:N8265be4e39864793b3a8073551ad458e . +_:Nb516f903d44b4c8cb14ebff25e8db193 "TOPDB" . +_:N946c1ab86ed146c9a3cdfe7a4b3832c8 "KNAPSACK" . + _:Ncf3db61bff6d46e99d5595a4de0f1794 . +_:Na081a87d2f5c40788ce5b0481872753e . + "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record." . +_:N3ded3ae324d4494bb16086d6a8be7210 . + _:N0a1df3559a394cb8a947f1afcc6bc47b . + "None" . + "helpdesk@cropontology-curationtool.org" . + . + "None" . + "^GEO_[0-9]{9}$" . +_:Nd09f04b4adc64cf880e693d03603511b . +_:N1bebf4bdc80e431a90e6bb5682641a62 . +_:N07ccff1dbd11445bbb5344629fe597c6 . + "ClinVar Submitter" . +_:N2f8e4b27b5ed447697c8ddf7b4fbd37d . + "https://identifiers.org/hinv.transcript:$1" . + "^(Gi|Gc)\\d+$" . + _:N1ad16de480144f22b9bb0555adad55c9 . +_:N1fd56e1e568642729a455ce2118ea0ac . +_:N316e130d0ba04dada83e1847b32c3364 . +_:Ndf972beb78f941589f1a64e1ac016baa . + _:Ncb4d042baaf5467688e1ecad71985410 . + "true"^^ . + "https://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBCV_$1" . + "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1" . +_:Nf38aae21f1f14998bac892cfe9ad4e35 . + _:N66ce51d864b8498882ed8ef83e79f61a . + "12dgr161" . + "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families." . +_:Nd5e7d720031b41b9ac8d3efb0d6c261f . + "Digital archive of scholarly articles" . + . +_:N98cf09b87c7544ca9b5c3ed3c04d9ce5 . +_:Nb0766858001b44369b7a96e7adaef53d . +_:N99f02343684149afb417e452de205f21 . +_:N1b95267c480a40f095566f1894191ac8 . +_:N345e94af83c24b8cb0f14a418927da5c . + "4776" . +_:Nd8a1afbffd9a4d56b8e9d61e2e028675 . + "false"^^ . + "4019477" . +_:Nc1431de684b843f9b2e23173b3663944 . + "false"^^ . +_:Na2412d83215f4fe69e57d5f0f2834786 . +_:N733a773d8fc943efa28c07e6dec2d923 "oa" . + "false"^^ . +_:N4e6ab83244aa41ceb5181fe1bfffd0c0 . +_:N9bd1d91961834d3fb38cf785dfa60aa2 . +_:N21f3ccb6f4f94eeea08443ca8fbf62ea "ons" . + _:Na5c6f621c5b74d9db3920b720aab4b32 . +_:N60e999adb28748a09eafec120964b4e4 . +_:Nb9db43753a944e438f46a49cf0f49600 "VTO" . +_:N178f5e6c3d0d44678b64e58af14356b4 . +_:N992e1d6637f24413b309776e885650c5 . +_:Nfdca8cd53df0492fa467d904eb20c195 . + _:N83f18a32ca93429b9bc64a20b9de5b69 . + "http://www.semantic-systems-biology.org/apo" . + "Evidence ontology" . +_:N2319db45c3bb477e98e016398e3d25d6 . +_:N3eded30ccd064d07b3434f3f5ba0cd19 "planttfdb" . + "http://purl.obolibrary.org/obo/hp.obo" . + _:N7f36ee1f759241038a793ff9a2bca20f . + _:N5e65a4c30d8642e584d9faa9eb51194d . + "^[0-9]+$" . +_:Nc43e85de811d4707ad8ce2b251f93063 "FBbt" . + _:N21ff48392041431898b89b081c3d324b . + _:N145f0056e0ab4d5db4bbd88fe5448e9a . +_:N382b733c644445d196ddea91ace7e52d "wb.rnai" . + _:Nb07db8d85c974ccca983365be5752541 . +_:Ndf5f55b512144bda9b29b6997dd869d2 . + "https://github.com/oborel/obo-relations/raw/master/ro.obo" . +_:Nb54b2d1d27e14db697226d06798187fd . +_:Nc045372c7ac5482bb3d7279202d25a74 . + "AT4G01080" . + "00000001" . +_:N4b07372ff29c4def89704d7412f6dc5f "TGMA" . +_:N224adacfe06a4792af1ff13dd6d030c8 "isni" . + . +_:Nc55f978e8984433bb0c4fb9342d4f6a5 . +_:Nd4248321dbe04d8e96b089137fa11962 "supfam" . +_:Nba92a07344c4470292fff1ddf67fbe8e . +_:Nf55ef4737cb64ceb9c4768f4ef4d8ebc . + "None" . +_:Nffde36c529054a96914c98c93db8f016 . + "None" . +_:N5a12aa340d384cd88953bbf378555d1b . +_:Nc939984fbdd348359bc06b241f94a697 . +_:N8b92803175b54ee8b8098fcc90c831c4 "P563" . +_:N1a04ab50220047f4af0293e609a4d4a7 "dbgap" . +_:Ndfc7ada3dcd94964906539f710708cf0 . +_:N587a3a4ef1e14ccdbc48951e248b3650 . +_:Nfa62ef6bc8724e63809573c3c334a48f . + _:N20059fffba9b41fc93a0affa29491ff6 . + _:N1fd53614f0e34052adccc66f3b013f82 . + _:Neb2e818566a1405cbd85df264e8c54a9 . +_:Nbafeb873124d42a885374595d65569df . + _:N6355fa6d44e240f595dee46f84f646be . +_:N61fe46d44a0348b58a178a9d6ac02292 . + "None" . + "None" . + "Brassica ontology" . +_:N16784055d4f0408dabfc23308bfddabc . +_:Nd1e5e7677dbf47ab94d8547e678d7e43 . + "^\\d{7}$" . +_:N57974e5fb46c47f789710108686ae232 "BRENDA" . + "9-1-1 Complex" . +_:Nc83abefd57b84ac58f5708610fce3d87 . +_:Nddbe40c14fd446c892222b256b232a4f . + . + "Scopus Researcher Identifier" . +_:Nc977f42979984b418fc3efca2d070f35 . + "false"^^ . + "https://www.ebi.ac.uk/ols/ontologies/fobi/terms?iri=http://purl.obolibrary.org/obo/FOBI_$1" . + "false"^^ . + "BugBase Expt" . +_:Nf86409038a46471db5fe61ed81074fd7 "CABRI" . + "http://kim.bio.upenn.edu/software/ornaseq.shtml" . +_:Naa0cdf5feeac415084c567d26f0421bf "SIO" . + _:N120771935c0d4dc0a11212b6c100c973 . + "https://identifiers.org/biogrid:$1" . + "WBGene00000001" . +_:N637ba7877ea84cb6a79517357caa5ca6 . +_:N913f5c8e984145b19300f308253cde1b . +_:Nd849113afde645248d41158576bb41f0 . + "An ontology of core ecological entities" . +_:N17cb84b0e5c741f5aa79303d9ec2f33c . +_:N9bda280859de40a1be746b7ee89fdf42 "co_341" . + "false"^^ . + "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$" . + . + "CTD Disease" . +_:Nadb66795053642739f6ad422f4d5d1ff . +_:N992e1d6637f24413b309776e885650c5 "mmusdv" . + "Cotton ontology" . + "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences." . +_:N62a7fe4e510542dba8b2b54c9c374a31 . + "DrugBank" . + _:N9451b951de064ae7958814d4125f9cb9 . + "http://mged.sourceforge.net/ontologies/MGEDontology.php" . + _:Nb708e6eead714542b300b23f13dbe34e . +_:N46c2c5b30bcb49d88dbd2fab6b7ee5ca . +_:Ned21d29a8997441aa7cff593e853a6ad "ZFS" . + "ZINC is not Commercial" . + "false"^^ . + "70" . +_:N3099ae174b3e47068c0c77789abd0ed1 "fma" . + "https://identifiers.org/vipr:$1" . +_:N2f8286531df84ed18f5b465900286a55 "occ" . + "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases." . + _:Neea47e0bb1974a4c84091ad820e4560f . + "None" . + "^\\w+$" . +_:Nc0710d8f93504fd1a779cf43b5799797 . + "false"^^ . +_:N367f476fb54d4eefbd41285bab9e9b7e . + "^\\w+$" . + . +_:Nce0a1fd61c1348f4acbf73e64012b461 "OOSTT" . +_:Nae717fa3f839400db7a655c60380ca3c . + "BiGG Model" . + _:N457063761f1c49e7b2aab02b2c1d7493 . +_:N8f1c0c89c70d496db2abe09219940d22 "IDO" . + "^\\d+$" . +_:Ncaf0a4b9b03c4b8fb4e8773e1f11e89e . +_:N76296288a50f44359cd1be38e108157d . +_:Nd4670f4d3e914ef9b3842ff61c1f8914 "MP" . + _:N21583df1b70a47eb8045db4de403149a . +_:N03d4c5f75314466f914e575bac5a0764 . +_:N2bd08cc7f2da4c4f864bcc070fe22855 . +_:Ne6392ca29e614d589871a8d42d735b55 . + "IntAct protein interaction database" . + "None" . + . + "^\\w+$" . + _:Nf38aae21f1f14998bac892cfe9ad4e35 . + _:Nc921a2d2555e456da17b5721278c12b1 . + "None" . + "https://github.com/obophenotype/ncbitaxon" . + "label" . + _:Nd79d1e2a28894093a619fe635e24b4d9 . + _:N86d73947ecf44134a7a7935f3aaa1f0f . +_:N5b7e71e17c1f4549ac4207d03ecbc799 . + "https://identifiers.org/sabiork.kineticrecord:$1" . + _:Ndde711597f0748f6b22cde7a6273c942 . + "0000000" . + _:Nf1c4a0b4eb9f4988963e884c49ee12be . + "None" . + _:N8fd0c0ed6e83418687a5ca2a443e2277 . +_:N8d4489bbaecf44e89b621da29818f095 "apid.interactions" . + "https://www.jstor.org/" . + "DAP000773" . +_:Na52578e1c85f4c6988b65ba13ddf0a22 "FB-CV" . +_:Nd3eba3ebb05e4a818cdd04ce8a31cbe1 . + . + "75" . + _:N4357e212c93e4411aa48176cdbe72595 . + "https://raw.githubusercontent.com/obophenotype/cell-ontology/master/cl-full.obo" . + _:N9bda280859de40a1be746b7ee89fdf42 . + "SABIO-RK Reaction" . + _:Nc7c5ec27739c4c61b1825b44052bbf32 . +_:Nca00206ad74f4779bb7a8b036f206d93 "TAIR.GENE" . +_:N83530cc599b84fe7940d8ce3c983cf03 . +_:N59d2db01e2e145d8986b36dcaa21d3ab . +_:N73e5f388bb8b4fc4bb0d363af6cb871b . + . +_:Nb5c540e60db44f41a001bb2305bc3968 . +_:N1faf6d0016ae4fe08602b875e9763b4a . + _:N63fee6d2ddc3449f88bea29553a96cce . +_:Nb7626a5c5f9e4518bfc600534cafcfd1 . + "https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv" . +_:N4c4498dec7364a00bc9591c7cd70bee7 . + "OWL Ontology" . +_:N20f14c8b012d4622a71bc33191f81a26 "OAE" . + . + _:N6475dd200d13470bb9a78ed072d14258 . +_:N478f4c6c28aa44edb6963961c029cf51 . +_:N814485126d4f410f907d8e974e178b98 . + "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$" . + "^\\d+$" . + . +_:N41d2b2341fd34085b421d2999ac174af . +_:Nc6276c11ac514679b43e4c5355e3e48d . + _:N23e1d8616fd5403b98b89a0561232296 . + "^\\d{8}$" . +_:N534fba2da0324761a73c3c7d219bfd1d . + _:N2d031d7d069846748a5178cb8384da9e . +_:N51602c13754447e8961099ae71eaeac8 . + "helpdesk@cropontology-curationtool.org" . +_:Ndac119c395c946b2bbe5696592b45203 . + _:N365e340e00564b1ba3ce76b90304dd0b . + . + "https://identifiers.org/sabiork.compound:$1" . +_:Ne141d82c3b504833a18a3d2195642ea3 . + "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses." . + "Genome assembly database" . + "None" . +_:Na457c72ce7e947c881cdf1011eacd558 . + "https://identifiers.org/unists:$1" . + "runBioSimulations" . + _:N3b28771c5b814b459243886638d419d6 . +_:Ne3227edf15a242c09166ade70a577022 . +_:N000733400877484c9459873af6228f90 "gdc" . + "BacDive\u2014the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity." . + _:Ne7c195ddfa6f4bb4bf5b90b721df1f33 . + "http://ontoneo.com" . +_:Nf97621cadd184864b8bb38b1379885ab . + _:N2ebfcd2007f648a2b31f385c3ed0932f . +_:N32c6d012614e450e932e5c056ade85b3 . +_:Ne5546b34adde42fe9b8f68c875e62705 . + "https://ssbd.riken.jp" . + "https://identifiers.org/nextdb:$1" . +_:N07b7b653658b44a7b5cdeeaaf9834677 . +_:Na9bda41ad9ba45fe95a413a6fac55691 . + . + "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities." . + "MetaNetX compartment" . +_:N32daa80066094e5ca987b2dabf837278 . + "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information." . +_:Ne3abc5638c5346ab861f9862c32c36f0 . + "None" . +_:N6ed7ff8feaca40c8982b393b2be02640 . + _:N1762a242ae1444ed87a44fa3a9f39f2e . + "^PED\\d{5}e\\d{3}$" . + "false"^^ . +_:N365041ba8d884a35b69eeafebb66be4b "HPM.PROTEIN" . + _:N707812ac3439442fa52c56ce09fb5ca1 . +_:N610d5481271d47be9f7fa70bb2fae951 . + "http://proconsortium.org" . +_:Na771e336556f4b2fb5eb4630a9424736 "ECO" . +_:N120771935c0d4dc0a11212b6c100c973 . + _:N74c1bc675fc14bbe9d62287e6dbcac81 . +_:N59c2caec69b947628900e847a437ef3f "HOMOLOGENE" . + _:N71fae18547fc4dbb8391397f7162df90 . + "Vertebrate Genome Annotation Database" . + _:N79e05f406b514aad900187fd228270a9 . + . +_:Nf979ac9717804c4d9e8fdaefc4548c57 . +_:N25ea32885068413c812379f08e8ca7b6 . + "false"^^ . + "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information." . + "Electron Microscopy Data Bank" . + "0019171" . +_:N29bcabd8a02d4a7dbf655ffd140b4249 . +_:N8ff8bc55f7234ef98c6378a56f07fcce . +_:N617c2e4f9c7742cbb5b2ec5911bafec8 . + _:N7564a1a6fa1142a898ee1118930ebc0a . + _:N2e38048dcccb4f1f950630a53f8a6ef6 . +_:N5d7ac630d1024e1f8c001ff0f4861ead . +_:N35aafd9a4c4e47819aabedd2d24f596d . +_:N916c948b49754a83b4e10fbdf97f5d34 . +_:N913f5c8e984145b19300f308253cde1b . + "Cu.me.I1" . + "https://identifiers.org/nbn:$1" . + _:N9aabb1640155447ab460a29f51c623bb . + _:N7783f44a6d784105ac75d3f824fe461f . +_:N39f1fabf4ec74f9880c43e30e6a18312 . + "https://restraintsgrid.bmrb.io/NRG/MRGridServlet" . + "false"^^ . + _:N000733400877484c9459873af6228f90 . + "false"^^ . +_:Nd0b06170313e4273bfdb47bbaa8ad097 "sabiork.ec" . + "None" . +_:N5e1b98bc344f461ba19d489cfe227335 . + _:Ne6392ca29e614d589871a8d42d735b55 . +_:Na268d3aa8c8e4dfa9ed18c3326f3996f . + _:Nfbe6d559c85f45e7b590f21defea7db5 . +_:Ne12ff16ff54846ffb570aa672ea54c29 . +_:Ne6392ca29e614d589871a8d42d735b55 "CARO" . +_:N53968c86dbd8451e84df728fdb1a6280 . +_:Nf3141642ca524bc8b9c2300dc8410a75 "abs" . + _:Ne293cf9d442145209024c8ef08357646 . +_:N0b01242669a248988ebb3294b78738cd "sider.drug" . +_:Nce0049f736bc4eb4940186f90c3bc881 . +_:Nd129b41b00f241ddb45d8829c853bc41 "mamo" . +_:Nae92a973fa0b4768b0074d618ffd05a4 . +_:N973d5f75197f4e62b4151541b0530d78 . + _:N46d2f9848ec74b80bc4e8c1a95f5fd18 . +_:N4ce4354ddb8145bea6948a75e9310721 . + . + "^\\d+$" . + "None" . + _:N131f6f5e08fe41ecaae9f74fb8cb9710 . + "Unique Ingredient Identifier" . + _:N964777c09c55406392372aaa9f69beb6 . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene." . +_:N9050a6861ceb4822adfc9440378b818d "KEGG_ENZYME" . +_:N3ebf07ca2b0241c1ba481955a321d1cb "SGD" . + "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information." . + . + "ADA" . + "None" . + "false"^^ . + "false"^^ . +_:N49268ab2df614ebfa4fa473feeef3f0b "phenolexplorer" . + "https://identifiers.org/cubedb:$1" . + "\\d{4,}((_[asx])?_at)?" . + "false"^^ . +_:N0800c26950534dd4ae965d2e81217946 "PHOSPHOSITE.PROTEIN" . + _:Ne11f9dc43c4948989a887319421607c5 . + "Sustainable Development Goals Interface Ontology" . +_:N939c2f7edf224ca3af3e1512b04e9231 . +_:Nf45ce894a4964066bcf217d183fa1420 "merops" . + "GenProp0699" . +_:N127521249ff5476da457f7abb1d531ff . + "http://www.maizemap.org/" . + "^\\d+$" . +_:N448f6a69f7a04eb69992cf61b7c2ecfe "afo" . +_:N5fadf7ddf5da4432bbbd3a7e70bbee88 . +_:N9afd91d3f4274d38a303b281ae794191 . +_:N84a01dd6e2984a7e903fd1e2eea80fc3 . +_:N7fe62b0105984f09b44d10bbb32a1a4c . +_:Nc8f0c36dcf544ddea1a31add9f2eed0f "ligandbook" . + "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks." . +_:N9c9fb0ab41b74e778166b044205c95a2 "mesh.2012" . + "false"^^ . + "^CCDS\\d+\\.\\d+$" . + _:N6bb9fbe883d64230b76057046bf70ed1 . + "https://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBBT_$1" . +_:N5b7e71e17c1f4549ac4207d03ecbc799 . +_:N757ea47d698e440dac861a22312b3447 . +_:N3db681270eac4e60a7321ca3064a2cff . + "None" . +_:N19c5906a718642d0a0b283f1513f3d37 "oridb.sacch" . + "https://www.ebi.ac.uk/ols/ontologies/co_339/terms?iri=http://purl.obolibrary.org/obo/CO_339_$1" . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." . +_:N622778198fee4607a2970c06bc70a7a0 "TADS" . + "false"^^ . + "https://pubchem.ncbi.nlm.nih.gov" . +_:N7a104434d8594448bc6a6f8a33962a47 . + "https://www.ebi.ac.uk/ols/ontologies/xl/terms?iri=http://purl.obolibrary.org/obo/XL_$1" . + "false"^^ . +_:N8686c56490a142a18abd9fef2c0d6878 . +_:N52e792f0e76a401f862a97eaef71a60f . + "886" . +_:Ndfa05b9d1b5b414db76e746f57e4fe28 "ensemblglossary" . + _:Neaa68e2b80d94e38bf60f23ad400362d . +_:N522c4816083a4b169781ab723e4906d8 . + "false"^^ . +_:N33eb544740724625b6686e04ff66b6b1 . + "5282" . + "^GR\\:\\d+$" . +_:Nf8512b7ad2df4b3badedea9b45cdb572 . + "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily." . +_:N2e739d579ff54254a1d6400afdb19709 . + "^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$" . + "false"^^ . + "^mzspec:.+$" . +_:N20fe3cfbe4bc459f8ea76dde253f81f8 "MESH" . +_:Ndb9a523f2f974dc49dcf172fde857588 . + . + "^TTHERM\\_\\d+$" . +_:Nf66632b779704032b01cbc263a231b98 "BFO" . +_:Naf0a157f1eb9449bbf8883541d40fb3b "ega.dataset" . +_:N7be786ea70a241c1bf175ac3166cef23 . +_:Nf45ce894a4964066bcf217d183fa1420 . + "Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms." . +_:Nfb40b6fb213c40fda3dcc568487f9046 . + "false"^^ . +_:N49f8f3eb8eb04d1cbba747872e4b8b5f . + . + "Genomes Online Database" . + "false"^^ . +_:Nce2d12a386224a2f831cbba54672321d . +_:N49af0f91565841d28fe38a7d75281b11 . +_:Nf58c09af51144f978859b6c12b9f9ea4 "RBO" . +_:N4ae0eda0e1f34044ad9054b8aa8cadbc . +_:N5613984adcb348139db2d0f9061ba0e3 "exac.transcript" . + _:N363238435e604c40a221580b15889143 . +_:N8775bd81d8d34abca1586d9d249afc6f . + _:N6a72682a5daf4c3e871131e169c6a5df . + "https://www.ebi.ac.uk/ols/ontologies/co_322/terms?iri=http://purl.obolibrary.org/obo/CO_322_$1" . + "None" . +_:Ne6f3a9d0ae9e4f2fa353629ce0ec49a1 . +_:N2e67d130099e43aa8df726f1adcbfa9d . + "mgiglio@som.umaryland.edu" . + "An ontology of physico-chemical methods and properties." . +_:N22244989c630447d9fea929e53f9bdc5 . + _:Ncaab82f9bf5f4d059a23af71cc2498d4 . +_:Nf745a67060d64ceca480829e59933188 "P3890" . +_:N369f2f3b1bb04f82a3dbc2d819ca57c6 "MONDO" . + "None" . +_:Nee77eba3e0bf468ab18c448e942987b9 . +_:Na457c72ce7e947c881cdf1011eacd558 . + "EU Clinical Trials" . +_:Na2560cc8aeff43b08982d5b615486ad2 "homd.taxon" . +_:N37a0f1feab144a9fa80ba69e75be366f "pride" . +_:Ne3227edf15a242c09166ade70a577022 . +_:Nc677b50359f64594b3bd2315ed713a95 . +_:N36facfcefe684f008ba7b6dc4cc9b9df . +_:N3b28771c5b814b459243886638d419d6 "EFO" . +_:N1f2125934d7047eeb749daff7b026706 . +_:N218a8f8e47264c5db35e68df146738ab "fao" . +_:N524f46b3ec74452ea2b30e93f63a88bd . + "PA146123006" . +_:N287182f606e54b50abb164de685bbb25 . +_:Nbd53ca73eb664abf8da830c589cb156a . + _:N355e143330944ddaa4d412560999a139 . + _:N72d26e6ab5be4050905fe2cc8c06e961 . +_:N0118a94bbb2142ad8c753d1e313066f9 . + "http://www.enanomapper.net/" . +_:N9023b95ac1444ed296f0750dfc9462a0 "ONE" . + "DataONE" . + "None" . + _:Nc9904fc018b34ade8d541da147791e61 . + "https://www.ebi.ac.uk/ols/ontologies/caro/terms?iri=http://purl.obolibrary.org/obo/CARO_$1" . +_:N660ba1abd5c04ef8af1f70ad9187b689 . + "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences." . +_:N35c3b60e90224ca7b85a88cabe00b518 . + _:N44f120792a474404b940746620a6c6bb . + "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning." . +_:Nd0b06170313e4273bfdb47bbaa8ad097 . +_:Nce01389a0a144c348e0e902093f673b8 . + "FlowRepository" . +_:N84484c37ee2d4e1f817a804a527a0be4 "myco.smeg" . +_:Nd850a9f26d9b450da83d7b7eb36c6b46 "ecyano.experiment" . +_:Nd70f3c5e24c64cb5be22ae8b9b2fd5b6 . + "http://www.ebi.ac.uk/RESID/" . +_:N0210baeaa3a14abc8adcd29b8cf8031f "SMPDB" . + "mb4@sanger.ac.uk" . + "https://identifiers.org/tair.gene:$1" . + "^[0-9a-zA-Z]{8}$" . + "0001350" . +_:Nf501d36f84574f1cba14ae6f21c06064 "aspgd.protein" . + "https://identifiers.org/gwascentral.marker:$1" . + "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1" . +_:N5d163b2df4c648d6b19645489ab8dad9 . + "http://purl.obolibrary.org/obo/fbcv" . +_:N9298512f00bc4ae98d4eb2a4773b1b6e . +_:N07ccff1dbd11445bbb5344629fe597c6 . + . + "http://worfdb.dfci.harvard.edu/" . +_:N4eec6012491f4414873a36beea6c0cb4 . + "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form." . + "Bloomington Drosophila Stock Center" . +_:N469313bed1b94fd9b27952663e3298b2 "hovergen" . +_:N20f14c8b012d4622a71bc33191f81a26 . +_:N9d42c58ecfeb4fb088a60a5f4086e26e . +_:N98d9751741d14917b3d7fe23e9746a73 . +_:Nd6457a3350794b458ce4c557f066df19 . +_:Nb962958d4f9c48748ef382af8d90adac . +_:Nf38aae21f1f14998bac892cfe9ad4e35 . +_:N73df4db795244208909f2a3424000513 . + "https://github.com/obophenotype/sibo" . +_:N0ee451b4bbc64761a685edb3bc2ee449 . +_:N89de7f8c9aa442f5badd1c3a8394493e . + _:N095540f9f12247789df5af949bdc1243 . +_:N0f1b3873aea24d2789cf486e57647e10 "METACYC.COMPOUND" . +_:N0da1863a61c048ebb487fea4a5bd3e7c . + "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r\nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies." . +_:N614394e07cb94771a7a89cafc09eaadf "FYPO" . + "https://identifiers.org/ncbiprotein:$1" . + _:Ne7d9e9b1cd8a47dc8f09566b09980b3c . +_:Nab2602af8f344e0ca8627af6dba72ad7 "HGMD" . +_:N95629e14906b415a871f9ca8b066dddc . + . + "^GC[AF]_[0-9]{9}\\.[0-9]+$" . + "PTHR12345" . +_:N2e2552dad58147e6854bdcbe947f8eba . + _:N801fe1b6fe7749e6ac97035baaef3f7c . +_:N9bd1d91961834d3fb38cf785dfa60aa2 . + _:Nf200b2564eff40b3be93325ad266b84f . +_:N14d14e3eee3a4ae78e5746d36598413b . + "false"^^ . +_:N2f8286531df84ed18f5b465900286a55 . + "^(ev\\:)?E\\d+$" . + "PiroplasmaDB" . +_:N8defb2b4eda940dcac186a308c631b4a . +_:Nc431ae60df9a4a41817a6fa522f428f2 . +_:N9ac8a3e20d46453d8f50b1222834b6c0 "HGNC" . + "false"^^ . + "he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles." . + _:N9194d61945c14b6b8c969daabe1f050c . + "^NCT\\d{8}$" . +_:Nbe49d29a577049cd9bb1ed28db6a8cf7 . + "https://www.ebi.ac.uk/ols/ontologies/vido/terms?iri=http://purl.obolibrary.org/obo/VIDO_$1" . + "false"^^ . + "false"^^ . + _:Nb4af43fc406d4536b7054b13c61d0bfc . +_:N30b300e7c34342358193c71c787d5330 . + "None" . + _:N053e3f965e29486c887349e054d2caf9 . + _:N640544fdf4574b97be207c3e042a8fe4 . + "eVOC mouse development stage" . + _:N52e1b1b710cc4459af606dd5754fad54 . +_:N07b3c36d14ef4c039c2c09c0d599d421 "MMP.REF" . + _:Na9dcc74989624a2589d1f5c4c423c142 . + "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by \u2018gold\u2019 prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed \u2018gold\u2019 namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes." . + "phs000768.v2.p1" . + _:N12824a2c768a44b6922571c6ed72d297 . + . + "https://identifiers.org/ideal:$1" . +_:Nd37d7bca37ca4048a7a659d734bb3a12 "VectorBase" . + . + _:N8f1c0c89c70d496db2abe09219940d22 . +_:Na1bbd468397340c1b1e9c55784929395 . + "None" . + _:Nb42cec42ee7843428b87d3f854c1e505 . + "0001417" . + "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000" . +_:Nf494234c875340f787e0e41ebcc829a7 "lgic" . +_:Naf7963ae0084401283c4e462a9ae6a35 . + "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli." . +_:N8a7ad7b64a4b44ae933687b24f724c4f . +_:Nee2e749a53b54ab3866c5bd75e203649 . + _:Nfaad8a6c407c434f9df70f510b3f2435 . + "Bilateria anatomy" . + "None" . + _:N39fc3df53c004ad09ee2a5880561db3d . +_:Nde8afb9a390c453990123a06cfcfde5e . + "None" . +_:Nde8afb9a390c453990123a06cfcfde5e "CELLIMAGE" . + . + "https://github.com/arpcard/aro" . + "Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS/USDA-ARS - Sept 2019" . +_:N180adeb98e224199af87a54ba29a404b . + "false"^^ . + _:N4014a7f386ce458ba2b30fce8df690b1 . +_:Na268d3aa8c8e4dfa9ed18c3326f3996f "RICENETDB.COMPOUND" . + _:N0c6d2fa4df874c1f8ba12536170db208 . + _:N57b6b7e4c1084d308230bceb2d9bad77 . + "osa-miR446" . + _:N1f61023441d24f1095ae15b5f7ed339c . +_:N2bf6e0208f3c46b3a14ffdb4a5fb8e05 . + "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity." . +_:Ne5d04b8e6e5440d6bc6ffcd13249ade7 "GSID" . + "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it." . + "TriTrypDB" . +_:N0202c6819a224e6992d168869a8bd9f9 . + _:N39f1fabf4ec74f9880c43e30e6a18312 . + . + "https://www.ncbi.nlm.nih.gov/genbank/dbest" . + . + "false"^^ . +_:N800e5de3b3554437a7c28aac7a4d1da0 "MW.STUDY" . + "https://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_$1" . +_:N3b557a620bfb4681b8038a34ee623eae "ensembl" . +_:N439218aaec214380b719c999fd554f2b . + "https://identifiers.org/beetlebase:$1" . +_:N307bc5e5705a46ab8249f6a51548e02b . + "^\\d+$" . +_:N7ff748328add482ab247138c2b766364 "bao" . + "None" . + "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats." . + . +_:N7d3d1f9b0d7844128a2bbee95159ea08 "Allergome" . + "None" . + "http://www.cropontology.org/ontology/CO_330/Potato" . + "https://github.com/rsc-ontologies/rxno" . + _:N26a7cc3a64ca4a229a0a125450fb1a45 . +_:N1b6b11928efc447188612e6607a86fe9 . +_:N48f25eaed1ec4987a5f7b06d41bc115c . + "^EGAD\\d{11}$" . +_:Na191d51c9e7e46b6855bf61cc9749bc8 . +_:N08515055c8844de5b31d2d968cd023bc . + _:Nfd7276d52422422ab1d47e1bd70123e2 . +_:N436edd5aa6fd42c7bc21583cb3cdb2f6 . + "https://identifiers.org/kegg.module:$1" . + "https://www.ebi.ac.uk/ols/ontologies/clao/terms?iri=http://purl.obolibrary.org/obo/CLAO_$1" . + "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis." . +_:N89b1ab1d5ad24707b3e19f0dd394f7e6 . +_:Nfa7327d5fec6470eb1d5867dd9005bdc . +_:N6fa8ba1e749341ffa56ed021fd22f243 . +_:N9bda280859de40a1be746b7ee89fdf42 . + _:N8af0d8f3d2c44b169cf209958a9b1a5c . +_:N776b4781d4df427d9ea4477f4663d65c . + "Addgene Plasmid Repository" . +_:N0c072d5c954942d3977b0fbe41acb490 "elm" . +_:N9c441606434344d0aaa4057cec0155a2 . + "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites." . + _:N9e27caa0b2d4461a834f2bfeedac28f8 . +_:Na8e61fc3b9af4b038a994d1636edcac3 . + "http://ifomis.org/bfo/" . + _:Ncd823ff23f044bdc9d0f3e0ae3e84260 . +_:N9451b951de064ae7958814d4125f9cb9 . +_:Na3b75452a5ac49758dec821b312527dc . +_:N8382398e586c45068136eb545b6c2b34 . + "https://www.ebi.ac.uk/ols/ontologies/cvdo/terms?iri=http://purl.obolibrary.org/obo/CVDO_$1" . + "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions." . + . +_:Nac52d80dc2c8469f98fcc2adcbd666f2 "viaf" . + "^CCO\\:\\w+$" . +_:Ncf9c4e20ea9b4b77b552ec63e79b4e9c "CST" . + _:N0c072d5c954942d3977b0fbe41acb490 . + "Bgee stage" . +_:Nbebf1b4207d0478b9cbcf4ef27879570 . +_:N31ed7b4787724efc89c62dd5152b5d4a . +_:N022626926638431081aeb826a3c9f368 . + "P29894" . +_:Na95ca4a28e564c86884911f795a7e5a8 "irefweb" . + "Lindsay.Cowell@utsouthwestern.edu" . + _:N766c1557f3c14775ba557ca92c663a12 . +_:N45c2479ecd96428aa2705d908a99f380 . + "None" . + "false"^^ . +_:N34c69bac7a1b460691a23737f2561b84 . + "^\\w+(\\-|\\.|\\w)*$" . +_:N5a2f226f7f8141f78330635c94bcd38a "KEGG.GENE" . + . +_:N03992d583fed410284fd121b2572b270 . +_:Nf9de609453484e21bc09be1bbf6accbf "GenAtlas" . +_:Nb1285702afbd4ef78798bedaf2722db4 . + "Drosophila development" . + _:N3b33510e97774c2582946300c5886115 . +_:N76d7fff21f574c7695358d308cf3b5ec . + _:N6ebb5b62da3e41f182ce80060bb75670 . + . +_:N5b40088bb4c84b159df3e269fe2bb76b "GECKO" . +_:N42a80997bac644fc9518f077a9a54670 . +_:N8853b3e109af4ac6b5ab76115bad8efe "ZP" . +_:N4c5bc540b4bf4dd48674e6c6d2bad1c8 . + "paul.fabry@usherbrooke.ca" . + . + _:N915213286aaf45949781fcfba0afc819 . +_:Na82f715018494cd4a0cc980e42a90f98 . + "None" . +_:N73b31b692997431387a08f0938dde443 . + "https://identifiers.org/treebase:$1" . + "https://identifiers.org/ndc:$1" . + "https://identifiers.org/oid:$1" . +_:N242ff853929243fe8af42e112dc95de6 . + "false"^^ . + "^\\w+$" . + _:N15ac447319ba47d79b2d318694ae3b39 . +_:N7c8b179998df4e85b5c5715eaa881c02 "clinvar" . +_:N40473e7a2d724b43843b62a40ad1be9f . +_:N640544fdf4574b97be207c3e042a8fe4 "ehdaa2" . + "PANTHER Pathway Component" . + _:N013bb45c91c94c44b70855ab68523acf . +_:N23145fa936ca425fb244256f342c3138 . + _:N5aa478ac516f49c1aa82c9a623aa7fa7 . + "https://identifiers.org/vmhmetabolite:$1" . +_:N3d92b75026e840b4b252d6bcee0d4051 "hao" . +_:N4040e1c6944c40cbb4fd717a0c26c142 . + _:N152c31a785de4d839239b878070dc168 . +_:Nf7bbbb997d69421a9788742039059736 "isbn" . + . +_:N6fc67fd427474a8e808b7592459cd108 . +_:N6aa48a8c17e149d3b7959f3593111219 . + "false"^^ . + _:N98ad7bc51db84276930ba2dd2eaaf978 . +_:Nbd6b6515f64a48a19f289bf5f16b484f . + _:Nf5360dbc35964ab4ba51357f7c4075f8 . + "https://drugs.ncats.io/drug/$1" . +_:N68f0b6b0f167418ba7e9cca96697dd04 . + _:N3b53f60f9cef4f0997e39c1f1633dbc0 . + "helpdesk@cropontology-curationtool.org" . + "https://identifiers.org/isfinder:$1" . +_:Nd28873daafbb41d190839b38fd44ca62 "DBG2INTRONS" . +_:Nc03711e412d147de97b14b81db9a329a . + . +_:N22debf0534a543ac8bd37b7233a1f143 "worfdb" . +_:N7e97240b25654edba58510586a9ef7d6 . +_:Nc07514333578449a9c4aff4e8de23160 "bacdive" . + "false"^^ . +_:N41d2b2341fd34085b421d2999ac174af . +_:N4fa636b2e2f343e1adc0205bb1e09053 . + "MultiCellDS collection" . + "https://identifiers.org/eu89h:$1" . + _:N78e61a42273d44a3945b9664cdb67499 . + . + "^\\d+$" . + _:N22debf0534a543ac8bd37b7233a1f143 . + "false"^^ . +_:N51602c13754447e8961099ae71eaeac8 . +_:Na4c7390a049047d7abc2772c484e9a03 "CLAO" . + "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes." . + "https://identifiers.org/ped:$1" . + _:Nf03fb811408b451cab00390f5a375d78 . + "^GenProp\\d+$" . + "Ontology Concept Identifiers" . +_:Na10d57773a2749f1a79935ab1e871353 "pmp" . +_:N673ed1b2027b45ff8437adf7b08a0ce0 "autdb" . +_:N501096689a83414a814a55e4c7ef2898 . +_:N01543268fbc449e4909f8c8e2f8ac234 "FBbi" . + "https://www.ebi.ac.uk/ols/ontologies/mop/terms?iri=http://purl.obolibrary.org/obo/MOP_$1" . + "DDB0016567" . + "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra." . +_:N24016b4535b14b2bad8a8d417ea26f48 "SubtiList" . +_:N6238198377c342e6b92a5629ac801b0c "viralzone" . +_:N31ab09e6ffef4820beddb631d8a4c00b . + _:N6acf7910060a452394b1eb3af515ca70 . +_:N60a2a37d481348aa9be47d1629e99c36 . + _:N0fc43559df264091b9787636850b7688 . +_:N55e505922c42443e8c55c6b970637e81 . + "false"^^ . + _:Nda2e9e6278eb45cbbdc2f05f9c56b3cb . +_:N1c843245544c40d2893f436ce8d1e763 . + "Bgee gene" . + "Uber Anatomy Ontology" . + "false"^^ . + "None" . +_:Nac8917df455a4c6f9210cb84ddc45743 "DPO" . +_:N79cced6c5fde41c087a395bb63c4a246 . + . +_:Nc85b5255ecdb4fe98fafb8e9fe8b1039 . + "https://identifiers.org/virsirna:$1" . +_:Nddf07a489c5e434d9560c88d2641d28e "protclustdb" . + "LINCS Small Molecule" . +_:Nd560a13b92ec43c3af60b7afbf6252c4 . + _:N2d7e38d6d55f4bfaae8fef8cb8734149 . + "RiceNetDB Reaction" . + _:Nb6b8a5bc05a6476ba063e466d695af2d . + "false"^^ . + "A\\d{6}$" . +_:Na01bfee6cf624720bdb44bf11656ed55 "uniprot" . + "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources." . +_:Nb6354d2bf5914b949d537941e6290ba8 "grid" . +_:N1af2bdb842d34bf0b623a4afc9535664 "hpa" . + "https://www.ebi.ac.uk/ols/ontologies/ero/terms?iri=http://purl.obolibrary.org/obo/ERO_$1" . + "349124" . + _:N0e19a352a4374baebb493df47f56750a . +_:Ne302b25c29664de382a7a2cb64c99d21 . + "None" . +_:N97cc5eedfc4b4add992b8ca998901922 . +_:N6f4f949a62694a73b983a073fdd5f2c5 . + "https://www.ebi.ac.uk/ols/ontologies/reto/terms?iri=http://purl.obolibrary.org/obo/RETO_$1" . +_:Neaa68e2b80d94e38bf60f23ad400362d . +_:N42277e7ccacc4b499caceb344bc8b416 . +_:Nf979ac9717804c4d9e8fdaefc4548c57 . + "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway." . +_:N225d8dca04f24ff2ac7464d8bffc2103 "agricola" . + "true"^^ . +_:Nca8f2e70bb5249f3875290e7a5a9737b "cryptodb" . +_:N565cd27b027840668343bbd0d518dde6 . +_:N4f23d4eb1f7d44e9905785c028de617c . + _:N3568d52fafd3450bbdce6fe569f64d5f . + "false"^^ . +_:Nca16cbfd166c4d66b844cb14f4eb2961 . +_:N7f29f7dfbd0d4d2388b655569d7632f7 . + "false"^^ . + "KEGG LIGAND" . +_:N93c2a0a434054ed0abec243e622c9011 . +_:N984648f01f624e8592e8f1d14da97e15 "EcoGene" . + "PB000166" . +_:N4feb3d3c57e54db182fac3d8c17a93a6 . + _:N0ded47946a544e9aa086c52113b728de . +_:N4ff4ed80fd664d078a0ea31c8175d80b . + "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1" . +_:N627b152d60874fa3830b02402a03b335 "UNIPATHWAY.COMPOUND" . + "https://identifiers.org/atfdb.family:$1" . +_:N2207cb9825ca4857a99377e9320bd4ca . + "https://identifiers.org/dbd:$1" . +_:N97c62620ca16409fa4c3747e12e4da93 . + "^[A-Z_]{3}[0-9]{4,}$" . + "http://biocyc.org/" . +_:N4bc01410d8de4f83884ad79b4c8520b9 "dbprobe" . + "None" . + "false"^^ . + "None" . +_:Ne7d9e9b1cd8a47dc8f09566b09980b3c . +_:Nf9e69f78d68b4a21b19942ff83588597 . +_:N2ef3f44d14014b1f86fdad96aba18a35 "pkdb" . + "TA_H3" . + _:N31e97ce1c06b44e6a5bc5e9b10d802fd . +_:Ne807677e0e1442e9a4550666596f8509 "lincs.data" . +_:N6f08ce6ed1e348de98162382ed230dac "mw.project" . + "https://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_$1" . + "false"^^ . + "https://www.ebi.ac.uk/intact/" . + "miR-1" . +_:N165e8a378f9349208f6eed4fbf0386ec . + . +_:Nf8a02cf1098e42c2a999b49b5e1cb151 "CORUM" . +_:Neafa91395800491db2e362ff2c7563e8 "DEPOD" . +_:Nea2ca62e57654db5808786583f58f3df . +_:N83259a18a1184b20ad91f57d5b6e61c7 "MOP" . +_:Nab270d80455f4cb2b796264e1adbda82 . +_:N501d0591b002410786e4ea0e2c11b44e . + "Ontology about the development and life stages of the C. elegans" . + "http://www.cropontology.org/ontology/CO_356/Vitis" . + "None" . +_:N05a5d3a9dfcc413fa0f14a15d978f106 "ICEO" . +_:Nde0151d00a7d41efb4b6a3a2abb3b664 . +_:N019afee8c3f8421c906f24d086bb4903 "P2153" . + _:Nf3136ccec9b04c91bf969e25e2f67994 . + . +_:Ne8e6b1adcfcb458897cdf3b951ddb515 . +_:N8508ab4c454543fcaf5ab3c699277b78 "sdbs" . +_:Nbbc2252186ad4bd9b79f568d8fc2a98c . +_:N96d50ada165f43239347a3911fef3a96 . +_:N7dc87295db9547ad963027e8ec301f6c . + _:N5751b1490fbe4702addcafa52560b1a7 . +_:N985266fd7f124cd0bab976bc21947049 . + "helpdesk@cropontology-curationtool.org" . + "https://www.ebi.ac.uk/ols/ontologies/olatdv/terms?iri=http://purl.obolibrary.org/obo/OLATDV_$1" . +_:Ndbcb9f6e10e74e6f94bc95fd653f33a0 . +_:N72ba5b8677854d10a4d65dc5de7786e4 . +_:Nf489ad15476949ad8bcf32122ebc1d1a . +_:Ndd68281b550e42a0aa290f072baef954 . + "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production." . +_:N544952f6e754449db545da3e30d063c9 . +_:Naf7963ae0084401283c4e462a9ae6a35 "doi" . + "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information." . +_:N51a763dfc61a469790f09a5bfce0216d . + "^urn\\:nbn\\:[A-Za-z_0-9]+\\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$" . + _:N9afd91d3f4274d38a303b281ae794191 . + _:N42a3b62cf10a458ba4f14936f997345c . + . + _:N7d698738e6ff4e5190c60dddc2c31e0e . +_:Na6af9bea5d1f4518b572a5055347769b "GENEPIO" . + "AA0001" . + "Sugar Kelp trait ontology" . + . + . + "C063233" . + "mah79@cam.ac.uk" . +_:N757ea47d698e440dac861a22312b3447 "UBERON" . +_:Nb07da192e05349bb9c11c791ce86ca7c "EMAPA" . + "Bambara groundnut ontology" . + . + "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis." . +_:N79693732d92648c286a0e15e2ef76de6 . +_:N3a014a7fe19747a0b0d8323ab740ff21 "TAIR" . + "0011140" . +_:N33eb544740724625b6686e04ff66b6b1 . + "false"^^ . +_:N19405b3ba1f14c14933453581107256a "MAXO" . + "KISAO_0000057" . + "https://github.com/obophenotype/caro/" . + "Carbohydrate Active EnZYmes" . + "https://www.ebi.ac.uk/ols/ontologies/co_335/terms?iri=http://purl.obolibrary.org/obo/CO_335_$1" . +_:N143a47c3a9d24a4c8ed42cce2b7ec9ea "dcat" . + "17186" . +_:Ne302b25c29664de382a7a2cb64c99d21 "Xenbase" . + _:N4abe2e05da3e4c8683e99a8bea53bb24 . + "https://identifiers.org" . + "false"^^ . +_:N7149d6baa1a24acabe738e51f25fb8b4 . +_:Nf200c037106a4451b389e15a0a0e05f5 . +_:N794a3035514a46ffb8b213a1714fbbc2 . +_:N9dfb4b5be783465b863a3338f2c756b8 . + . + _:Nee101c4ae5544dd4955e9a1fde93483b . + _:N0169e4999f994aeb8197bdbafec9b206 . + "http://www.imgt.org/" . + _:Ne37dbf4413fc4ea2b4f91c7d2a033ac4 . + "None" . + "^PM\\d{7}" . + "false"^^ . +_:N9c205263ac8d4d5a86322852eda2d271 . +_:N7b51f1e0f55b428bb75982b3420d7bea . + "200282" . +_:N2c7fd03289e540e9a540be779561671c . +_:Ncb3317a53ab0404c9ad4a30571b05718 . + _:Nc0d833e9cb664195b674833b059ee5bf . + "None" . +_:N4697d31a1fa04f13bd8fe8c751fbe8ef . + . + . + "^KIAA\\d{4}$" . + "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team." . + "false"^^ . +_:N628de0cc51d94c8db7f9c4db7929ca33 . +_:N4ce2f4635fab4a868be9c690a0046706 "GOA" . + . + "None" . +_:Neca7cb8c0122483d978a9d352217c03c . +_:N8b12d55083bf4eb3a728907f1df3d94c . + "https://mods.rna.albany.edu/" . +_:N09a5bf4ae4fe4bdb8d031f0d712640af . + "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$" . +_:N98cc88af9dd4416690a86ae4e3dc26c1 . +_:N076be8bf96da4c6ba8992f999d3d571a "swiss-model" . + "false"^^ . +_:Nd2c15222fefc42a8bc40bdb34c85b1f8 . + "https://github.com/OOSTT/OOSTT" . + _:Ndbbed642fbc547e19817ddc91f1993b7 . +_:Nc153e64b00d7408f9ebc1159b1ac1054 "biogrid" . +_:Nd8278c613a8d4fab877c514b0d2fa8b9 . + "8497" . + "KEGG Orthology" . +_:N7411f1e9e29346f98db96fc1d53c782d "HPA" . + "false"^^ . + _:N77916549a55a4a2ab7e9c8bb34d45c7b . +_:N44ef22124839436e93e45e447bdc7507 . +_:Ncf9c4e20ea9b4b77b552ec63e79b4e9c . +_:N451fe22cc507422cb55f0c7ca3fceed3 "FB" . +_:N44072a7f5e594d91890a4047658ee905 "iao" . +_:N3fc1564d6fda4cdeb69a4cbee8ab338d "meddra" . +_:N585dcf478e2545a09b891c5be3bfa302 "PRIDE" . + "false"^^ . + _:N6ffe2f52c07e4208b7d246dc72c77752 . + "false"^^ . + . +_:Na9816ba4366a48e8995d323fdcb74b0d . +_:Nafd05e5d8008495094f123c705d1833b . + . +_:N696535c8979045f78f645bbf3ae2090a . + _:N4ebbd675e76f42b2a5e85d080c5098e7 . + "false"^^ . + "Signaling Gateway" . + _:N2f26ccba4cdc4e8590d301c7c28e5b42 . +_:N8fe7e785455047f6ba169a161fb66a25 . + "Q2207226" . + _:N773f189b13954bf4a38aed85d9f11402 . + "EBI-366083" . +_:N7403f3e7a90f400f8717999ec2a8e5ec "imgt.ligm" . +_:Nf48675db795d424384ba79101ba396dc . +_:Nc25eea459f024e49abc1cfbc32fd6159 . + . +_:N3991fb870fba4ddabecb19a86b2b366a . +_:N94f05aac83ca4ad28bd56ce6349e4fae "FAIRsharing.5hc8vt" . +_:Nc82f8016683345dbbf212386fd1c94ac . + "Human Dephosphorylation Database" . +_:N553dbee5035941fcbcdc18cc12e4652f . + "m.a.laporte@cgiar.org" . + "^\\d{7}$" . + _:N203d16e663434909a42ceb8c8ab9ae49 . 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"https://github.com/PopulationAndCommunityOntology/pco" . +_:N39c12bd8213f4679a51b36052b241bc5 "csa" . + _:Ned26d0e4299b48eebed668669a029665 . + _:N34462d06e3b34104a6cced84ac7d424d . + . +_:Nbc12c52a0c2049a3aae769723e67f0ee . +_:N8c31c174ed9f414098e1b7efcb82d281 "BFO" . +_:Nbdad26c0005b448793cb1f32ce4b2c05 . + "https://identifiers.org/idr:$1" . + "false"^^ . +_:N13e7e2cb7b51427bb415ddb63eed5b45 . + _:N2b2fb1fb630f4aee94ddb6ca1ce70588 . + "https://identifiers.org/mim:$1" . + _:N5182ed9925ab4dd0b19337a5a50e343b . + _:Nea3cf25557bb4334b39365042bc20b5c . + "None" . + . + "https://identifiers.org/noncodev3:$1" . +_:N0e19a352a4374baebb493df47f56750a . + _:N7171b6fee26943ca941e38c075dfa824 . + "https://www.ebi.ac.uk/ols/ontologies/nbo/terms?iri=http://purl.obolibrary.org/obo/NBO_$1" . +_:Ne85b7a95d724464cb4ada98855da93e6 "arrayexpress" . +_:Nb60d22eb00c047f1ad92598d37965608 . + "false"^^ . +_:N6bd7246bc7d8426188033448e5dd568b "biomodels.db" . + _:Nd458b6010f6b4a1799c200028d6c12ce . + 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The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. 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These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world." . +_:Nfbb76729fce34b61ad3b2f3bda2359ef . +_:Nb2e57648972948cd976e286a900a446f "AMPHX" . +_:N98cf09b87c7544ca9b5c3ed3c04d9ce5 . +_:N565cd27b027840668343bbd0d518dde6 . +_:N7f29f7dfbd0d4d2388b655569d7632f7 . + "https://raw.githubusercontent.com/monarch-initiative/GENO-ontology/develop/geno-full.obo" . +_:N80848c91c42e43a9a1a26cbe53649ec4 . + . + "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$" . + . + "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons." . +_:N5e4e76ce213f49e8a888aab55512d080 . + "None" . +_:N11386df2721d409b996eb9fd12a9f13a . +_:N51cf4fc7cfda46acaab75ead6f264fe9 . + _:Nbe1fdcfca90d44e184da720b748d2d61 . +_:N21c2f3a4260e4237a963eb45ee6b5d35 . + . +_:Nd4248321dbe04d8e96b089137fa11962 . + "false"^^ . +_:N72fa97d11f644205abd395a5d80ba913 . + "^[a-z_A-Z0-9]+$" . +_:Nb822aca4c83a4b70ad49a34d3cefdcbb . +_:Naf32b4c6aa954e8897151864369da756 . +_:Ndfb8b0672c6948b08f514fe7cde4901f . + "https://www.ohdsi.org/data-standardization/the-common-data-model/" . + _:N0ee451b4bbc64761a685edb3bc2ee449 . + "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts." . +_:Ne758d9770ac44554a2f95eb05f8d7d76 . + "OBO Metadata Ontology" . +_:N355d7c0c800847ebb811230d3fc4b4c3 "uberon" . +_:N3aa6d3817ca445138bff42f85a4f18e7 "doqcs.pathway" . +_:N9050a6861ceb4822adfc9440378b818d . + "https://identifiers.org/norine:$1" . +_:N180adeb98e224199af87a54ba29a404b "pr" . + "NCBI Gene" . + _:Na4d9b892b27f4ed7a5a89de7106b6063 . +_:Nc0ff0974d420469186842ffc145baf87 . + _:N83f3d38ae5014773aaa4d17d59a54239 . + "Protein Affinity Reagents" . + _:N8d376c31a4e2430ca2210d512ddcf09d . +_:Nd8694eb4e3db4e0da68c04ba48a2d13d . +_:Na032a97bf22547cdad8ea77c5ae5a02d "genatlas" . + "cp390@cam.ac.uk" . + "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data." . + "None" . + _:Ne85f8ee935324c76bb4314960782df7d . +_:N90733df28b614c6caf1a0ad861c977b3 . + _:Nc0f64d6f9c1c4beab251b8a0f7345f45 . + "1" . + "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay." . + "https://identifiers.org/ctd.disease:$1" . + _:N93c2a0a434054ed0abec243e622c9011 . + "false"^^ . +_:Nb8e1a056e7fc4ccb82a54586b1338f56 . +_:N5db5d0134a3b4ac3ab6ab94430f9238d . + "TAIR Gene" . +_:Ne8e6b1adcfcb458897cdf3b951ddb515 . +_:Nc7903b5546e0452da031f8e946a232ea . + "^\\d+$" . + "false"^^ . +_:N323a5d970ed4491e8dc17d29b54938a9 . + _:Ncf23c5bec81342eb824c467aec0ff76a . + "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence." . +_:N75f8180bd21548cab83926236ab6bf15 . +_:Nb03642c9ea6a4b5b88ce629411d65756 . + _:N9b6070b1a9fe4448976b74eb6983b8d0 . +_:N983068dbae6b4fecb088a17bdbc75c62 . + _:N773ec9077dc14b548a21e115df8c1fb1 . +_:Nedbbcf0b1389456fbc914f3969c52e4d . +_:Na849e2d5eb284c13a154741aae47d252 . +_:Nc4b7ce543a604215b26f1c2adec9cf26 . +_:N66be02c904b945ec878a06d233a592e5 . + "http://www.xenbase.org/" . + "DragonDB Locus" . +_:N2e38048dcccb4f1f950630a53f8a6ef6 . + _:Nccd74157f05f45f59692afb17dcda6af . +_:N985266fd7f124cd0bab976bc21947049 . +_:N5a2f226f7f8141f78330635c94bcd38a . +_:N07af36cc7c874f8c9a1b7accbb1818ef . +_:N250373cf4f67409b9f3dc8bef6f9e931 . + "None" . + "^[0-9]+$" . + _:N5252f51867e14d799a324047507ab116 . + "https://identifiers.org/bitterdb.cpd:$1" . +_:Ndd68281b550e42a0aa290f072baef954 . +_:N076be8bf96da4c6ba8992f999d3d571a . +_:N8a93951f8c574da9a55d66f3cc0683df . + "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations." . + _:Nccb97b0bb0b34133a7cb8392563c34a5 . + "Variation Modelling Collaboration" . +_:N1fb38188696b4280b64a58d6165bfa41 "cl" . +_:N51b952f85a8c4930a0c495d2ea0c49a6 . + . +_:N560685b9f7fc424c9431c313d33289ae . +_:N9978b74ef2014287b10d6d56994f25f7 . +_:Nbd48e819d62c4134979955520cd05ef6 "runbiosimulations" . + . +_:Nc83abefd57b84ac58f5708610fce3d87 . + "None" . + "None" . + "false"^^ . + "^\\d+$" . + "UniProt Archive" . + "Chemical Information Ontology" . + . + _:N92b5c54be32b41efa02e8919a8916db6 . +_:Nb7f0fa8d803944f6904e1e1c6afcd174 . + "false"^^ . + . + "https://github.com/pato-ontology/pato/" . + "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000" . +_:Na5b4417819bb4c7b9fe33d2e76ab9ef2 . + _:N5db5d0134a3b4ac3ab6ab94430f9238d . + "SNOMED CT" . +_:N973bf26e595b416f8d5d6508005ebb09 . + _:N79a95de0ed34421887cb470bd249760f . + . + _:Ne26f53d90228476ea5ed8cf83c381f8d . + . + _:N7c0a5be67b964aeb90114c3d5dc0c0fd . + "false"^^ . +_:Nd31dca0c55dc4a839dce572bed6b1f62 . + _:Ne98b0da091454eee9cd756a83991a496 . +_:N67e000bbb58e41d199c0366eefc069d4 . + "false"^^ . +_:Nd0da5d91b8e94cee8ba5fec4962e2436 . + "Friend of a Friend" . +_:N22bf6720df6341ed98118af48a0bd464 . + _:N24c2f60c631e45f1af4c4e0fb80ec0f0 . +_:Nf58c09af51144f978859b6c12b9f9ea4 . +_:N91ace8334a294aa398c2a713e21fa948 . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs." . + "http://www.gabipd.org/information/about.shtml" . +_:Ne24719bbb59147159296dc9adefd92e7 "biominder" . + "^\\d+$" . + "BioModels Database" . + "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa." . + "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels." . +_:N21f3ccb6f4f94eeea08443ca8fbf62ea . + "03307879" . +_:N0cfbf7b6f406434dabea6aa977faf4df . + "Universal Natural Products Database" . + _:Ncc41209a4b554b458754f8214bd83506 . + "46977" . + _:Nc335e7ce4c8e45d7ac4edfa85d6b6c27 . +_:Nb0c033b3ea604ddcacffb144f565a22c . + . +_:N2ff141dd4f1143e58a0427939ef4235e "insdc.cds" . +_:N98cc88af9dd4416690a86ae4e3dc26c1 . + "https://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_$1" . +_:N457063761f1c49e7b2aab02b2c1d7493 . + "https://identifiers.org/genatlas:$1" . + "FlyBase is the database of the Drosophila Genome Projects and of associated literature." . + "None" . + _:Ndaaff266250c4fde9e96fde8ac2f11e0 . +_:Nfb006ad11aa845d29c428d9210e7596d "SWISSREGULON" . + "^STOREDB:(STUDY|FILE|DATASET)\\d+$" . + "Degradome Database" . + _:Nfb55154509de4a298f707595df603b1d . + "Resources mentioned in \"Sharing biological data: why, when, and how\"" . + _:N361b1dfdf4dc49f58900a69216a19ed6 . +_:N6975a7df041545cc8c0d1cccdab5c923 . +_:Neb135005b6dc42c4915fd74fb790a89d "grsdb" . + "false"^^ . + "https://identifiers.org/cattleqtldb:$1" . +_:Na9816ba4366a48e8995d323fdcb74b0d . +_:N3173319686db41d1beb6a6623af3f821 . +_:N202ad33ee36d4e1ca0d284cb481bd0da . + "false"^^ . + "^\\d{7}$" . +_:Nafd05e5d8008495094f123c705d1833b . + . + "The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally." . + _:N3d159747ec5540e2beb08dc1ae4f0bf2 . + . + "ECO:\\d{7}$" . +_:N53945eb165e746beaee44c3c4c4e5ff8 . +_:Nbc7381c9d0874fad8a32e14a29bd5afa . + _:N067d8dfb07fd4a21bbcaa6a4c048f2e9 . +_:N59574c1789384e2783a79fdf274eedd1 . + "false"^^ . + "Anne.Morgat@sib.swiss" . + _:N6529be3816e4499a9858cb359e552b11 . + "0000685" . + . + _:Nb785409ba42747c0bb4ca39eb6218187 . + "http://www.xenbase.org/anatomy/xao.do?method=display" . +_:N5f3437f3d03d46ee9a36186c0c16a717 . + "^Rv\\d{4}(A|B|c)?$" . + _:N2f2acd88caa94ac2a96633712c57073e . + "http://www.tigr.org/TIGRFAMs/index.shtml" . +_:Nc82f8016683345dbbf212386fd1c94ac . +_:N68eea65049f742a7a02fa0817af74766 . +_:Nf1b9402988de4c75944dfe50a4c4cabb . +_:N057a2faa4307406ea7d53ea9633e444c "SO" . + "Annotated Regulatory Binding Sites" . +_:N3951549e824a4c27b94baa3a83d9ef41 . + _:Nefe38e24fc614cac83402fa6da9fbfd1 . + "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments." . + "false"^^ . + _:N124cf31cf4a44d6b93af688ed2884c4f . + "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae." . + "Dictyostelium discoideum phenotype ontology" . +_:Nf11d63b473404ae2b980cdfa5e1e5720 . +_:N8aa8089cb5474b5796a93089d0c67a5c . + "https://github.com/biobanking/biobanking" . +_:N3d3049473b1e41c998ee2acbef8b5ab8 . + "ENCODE: Encyclopedia of DNA Elements" . +_:N4756f3e592034daf98118bc5fea119d6 "P698" . +_:N23e1d8616fd5403b98b89a0561232296 "MRO" . + . + "neXtProt is a resource on human proteins, and includes information such as proteins\u2019 function, subcellular location, expression, interactions and role in diseases." . + "https://bioregistry.io" . +_:N806bd5b7f58542eeb8da5dfa64c643fe . +_:N973bf26e595b416f8d5d6508005ebb09 "mim" . +_:N4a9e2d1030ba456782bb447f1ebc2698 . +_:Ncae6bc33145a4ac09e0848c94b2f7e3e "FAIRsharing.2t35ja" . +_:N9f7c0478198346d39dc8c95d2dac92ae . + "false"^^ . + . + . + "^\\w+$" . +_:N8acd145536574d5583ad61c1bca0ec12 "mfmo" . +_:Nde1a34804050413faa027afc9020a051 "mirtarbase" . + "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases." . + "https://www.ebi.ac.uk/ols/ontologies/rxno/terms?iri=http://purl.obolibrary.org/obo/RXNO_$1" . + "false"^^ . + _:Nefd104b4ed66483b85014041abb9615b . + . +_:Na93aa711212843539d6c51089873e9aa "SMART" . + . + _:N57974e5fb46c47f789710108686ae232 . +_:N855bcb5ba5e441a6b0f12f515aa84521 "om" . +_:N5a55d8ee439a4ca293248119c5bf3bb0 "biomodels.vocabulary" . + _:N1498a7523e6143ac9448a6e9aa05a86f . + . +_:N96df64d8a6cd4c71ba7aa5eefee82fe1 "YPO" . +_:Nc2bb0c4f3f10404298d7c2d9b38d709c "P1693" . +_:N73656ba2f59a4db983de8ce6b0816821 . +_:N158d524410bd44a09c03f0b820b8aa01 . + "https://viralzone.expasy.org/$1" . +_:Nda0aa2eba30b470daf45a0b0446c4a5d "GWASCENTRAL.MARKER" . + "https://identifiers.org/sabiork.ec:$1" . +_:N859680eb65df498293fb9c6596e4dc1f . + _:N3a014a7fe19747a0b0d8323ab740ff21 . + "PRIDE Controlled Vocabulary" . +_:Nd30c5f284f714b86836137d5bb85825b "amphx" . + "Identifiers.org" . + "https://identifiers.org/panther.pthcmp:$1" . +_:N88c27e96d1e7473b9d6cfd5020fc65b4 "darc" . + "https://identifiers.org/metabolights:$1" . + _:N2eefea3300564918ab683d6e55939a0c . + "InterPro database of protein domains and motifs" . + _:N357661de6fa94352b274ec2f68208c23 . + "https://identifiers.org/miriam.collection:$1" . +_:N062ea13b48f84a4d90c5b64906161329 . + "^\\d+$" . + _:Nca00206ad74f4779bb7a8b036f206d93 . +_:N21351ed635974c38a5ce1fc6a56e3c92 . + "http://www.brenda-enzymes.org" . +_:N3ff9a01e88414db5bea577f38cb28492 . +_:N69b4b8ac3d9b4944b62211beaa334202 . + "true"^^ . + "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities." . + _:Nf4b049117c6d43b8bfc34484a1017588 . +_:Nd9431352917b47808b177a760f5010c3 . + _:N4fe206b6aa764807abed9ee164ef62b6 . + "https://identifiers.org/dommino:$1" . +_:Nbf015f1fb9da4e378abad99b2403e799 . + "277.9" . + "https://identifiers.org/ctd.chemical:$1" . + "Identifiers.org Registry" . +_:Ne92b5a55ea4948ae8ed5bd896b7994e5 "imgt.ligm" . +_:Ne4c2df75b9bc4347bac793b6bb5ee7b4 "mint" . +_:N35da353cf0504adfbdd15bb1e28a6f02 . + "false"^^ . +_:N4a0700cea95442d38204c90759bea97a . +_:N727421d5da524dfeb480c12a7d29e8db . + "true"^^ . + "None" . +_:N6b9fa6fb9c5c4829a3b4c97019b81eb5 . +_:Ndeaf53cf76cf4df0995815aecb694682 . + "TAIR Protein" . +_:Nc62d38b9a24a4862acdd61927b996ae0 . + "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region." . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes." . +_:N6bc6b0eb1c7f4cabb4c682aaf74ab713 "ACEVIEW.WORM" . + _:N115a07370ba7419bbb8df49a636d0b96 . + "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France)." . + "https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo" . +_:N6211d2cbfb2d4a5f944626a97578df5a "AMOEBADB" . +_:N6138a792c33b4fe4805274fd8bdb6740 . + "HsapDO:0000004" . + "false"^^ . +_:N1221925c5eab4bd985c5026cf78bbbe2 . + _:N79a616c455804ac59e4ef20dac34ba8d . +_:N8bb84703445a43d2b6649de47ddfde05 . + "DOULIX lab-tested standard biological parts, in this case, full length constructs." . +_:N7cb6e995c48448a99ac9c91c31d01280 . + _:N98b926fed6614cce99ce0b238135fa37 . + "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures." . + _:N9e3328d4ee5e4edda7e54d688de69a31 . +_:Nddc5591f60a243eb891c2c22d17aad4c . + "http://purl.obolibrary.org/obo/uberon/basic.obo" . +_:N32a75dabcf7d48699fef1e73146cb010 . + _:N313f049fa07c42d2b8c4db33a79579d0 . + _:N4ad3ed05adad4d9290ca20f5dbfbb97d . + _:N4c014e5fe26f4780bb66c88bd65e921c . +_:N7298ffbee4af490a8fc6f3c3aab9c2d8 . + _:Nab527ea683a54679a8e53c991deae608 . +_:N157b058f79ee4e41a4d2d9b992a739fc . +_:Nf4559e715dc54311870651d5701fac2c . + "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them." . + _:N974e88f25ab145538c92bd0567910d0c . +_:N46d6f476e520492fbf099bdacf538e9a . + _:Nda0aa2eba30b470daf45a0b0446c4a5d . +_:N55ffc9a9f1b54573a766100fc961437d . + "Antibiotic resistance genes and mutations" . + _:Nbe72e183e00048b3a84f8ec8ca797ac3 . + . +_:Naf77c6633cb045bd9ffcd900425f2a03 . + "GWAS Central Study" . + "https://identifiers.org/drsc:$1" . +_:N29678e58a2f34abeaf60fb99e1ab7a1b "OGMS" . +_:N728ce796275b4863964b48c17902e518 . +_:N956d8e022cf9478c9b578a40a063bf81 "TGMA" . +_:N0f6f666d8ee7487a9d7c17aa7ed80a03 . + "https://identifiers.org/mmp.db:$1" . + . +_:Nd279613637d440449108ff1f5362ed38 "DOID" . + "false"^^ . + "^\\d+$" . +_:N7d3e131e25e54fa7b3f33a4a36e9d3af . +_:N68eea65049f742a7a02fa0817af74766 "ensembl.bacteria" . +_:Ne21c66dca39d445ba56633b5af0dc19a . + "edong@umich.edu" . +_:N83ec9068c56c446f95d7792495a3cd9b . + "NCI Metathesaurus" . +_:Na3e977ac3afa422da18a57fd817832e3 . + "Gramene QTL" . + "false"^^ . +_:N83b18efb1f7f47edb3bd167d8a1908ad . + _:N8b3e91b707c141b0a8717e5fd5693bb2 . + "https://identifiers.org/bgee.gene:$1" . + "5" . +_:Nb38a145bd3a64dee827940918ab21298 . + "https://identifiers.org/gmd.ref:$1" . +_:N0fdcd9cfc3a340a2bec94f2e2ffbe211 . + "false"^^ . +_:Nb28bfb68df7e422694c18fd0f01471b8 . +_:N3e906588476740dcaa71f31f2f96e626 . +_:N2ebfcd2007f648a2b31f385c3ed0932f . +_:N0b681a875856491ab7747eb6afaf6cbc . +_:Nc35d45a975334c2580f165692718bd74 "imex" . + "http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait" . +_:Nf55ef4737cb64ceb9c4768f4ef4d8ebc "YRCPDR" . + _:Nae92a973fa0b4768b0074d618ffd05a4 . +_:N3da480d58f04497a9ea8d2898bbe6482 . +_:Ndc0568a6043748088c5d18be39f55f23 "ZECO" . + "OpenCitations Corpus" . + "The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR." . + "https://www-snorna.biotoul.fr/" . +_:Ne5abbadd1e1146e4b053d1f85d156dd5 "pw" . + "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. 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FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse." . + _:N3eded30ccd064d07b3434f3f5ba0cd19 . +_:N4540c25309574c53a92b978c339898e6 "funcbase.human" . + "None" . +_:N9b0fc0e0f56c4faba3d6c4ab3868b5f8 . + "https://identifiers.org/nbrc:$1" . + "https://github.com/OAE-ontology/OAE/" . + _:Na3e977ac3afa422da18a57fd817832e3 . + _:N3dfce6339c4447d990ec1fa5c85cb74d . +_:N5e15cbbe011c4875ab716028285dfd9d . + "https://identifiers.org/phosphosite.protein:$1" . +_:Nee2e749a53b54ab3866c5bd75e203649 "P4355" . + "CTO: Core Ontology of Clinical Trials" . + _:Nad37c7e18f3f4109a8c46f2d2bc01edd . + _:N76e38351b635431bbb9d1fbce1995a54 . + "KG09531" . + "None" . + "false"^^ . +_:Nca4642b26142463099c57ed83f590e5b "DASHR" . + "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources." . +_:Nd7e2d455d09c4dd487ffb79ef633fafd "XAO" . +_:Nad97919a453841efa74914e62990be25 . + . +_:Na76f7e7ba8004083a22786074dce1e7e "PHARMGKB.GENE" . + "https://identifiers.org/peptideatlas:$1" . +_:N61b9c512df0e4ce2834aab1152016871 . + _:N4ffc227255404fe7b1c3c17aee58c7dc . +_:N2cd0977b9a1541019bf7ff37b75f4760 . +_:Nddba05267b594856873311d52b838059 . + "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems." . + . + _:Nf03ad73e72f14eb6a9ab4159846fda85 . + "https://identifiers.org/gxa.gene:$1" . + _:N93de351c5d0a433e9a3e4b963ac9f8db . + "146421" . +_:Nc4894a582f0e4401bc4160cb75add960 . +_:Nd9cdfe549b604244a33fcab16fc4b028 . +_:Nb6354d2bf5914b949d537941e6290ba8 . +_:Ne570a2a0479a4a768720980608a1095a . + "Leszek@missouri.edu" . + _:N15b2bcfee70344738346916eb0cae76e . +_:Necd37b11f2df40d5b7e5b916ab4616bc . + "francesco.vitali@ibba.cnr.it" . + . +_:N244d728b56084ce48bd419f0201fad66 . +_:N592ea8f608ab489d9210f37aecbff7f8 . + "false"^^ . + "https://identifiers.org/covid19:$1" . + "NCBI PubChem database of chemical structures" . +_:N983ad9459f9a405e96dedc39afd614ab . + "https://identifiers.org/arxiv:$1" . +_:N26b6bcbd35544a83a91e19078b3f2298 "insdc.gca" . +_:Nea524d2309e64b668303daeb4e073b02 . + "Compluyeast-2D-DB" . +_:N057a2faa4307406ea7d53ea9633e444c . + "false"^^ . +_:N3ea8ad5d36ca484fb25448665c4860ba . + "1" . + _:Nc28463b3f2244e5b815e32109b5168a7 . +_:N7e92188114174ec3b8adaf7338e8210b . + "^GO:\\d{7}$" . + "None" . + "true"^^ . +_:N4346551db72549b792b04b09ad0ca006 . +_:N0118a94bbb2142ad8c753d1e313066f9 . + "false"^^ . +_:N24948dd6e2a2428782e4ddd4587b4136 . + "false"^^ . +_:N9d1c2262a5994b258750f78377039482 . + "^CPX-[0-9]+$" . + "VGNC:3792" . + _:Nada682e4394142e88850265be1c456e5 . +_:N3e906588476740dcaa71f31f2f96e626 "ISBN-13" . + "None" . +_:N5b2d34296fc240f99c5d19b1e619ebb4 . +_:N46ebb7d5e4fa414d860a094fe0a7ea16 . + _:Nfe8fd28e6a9449699164ed6b984f61c1 . + "https://www.ebi.ac.uk/ols/ontologies/co_341/terms?iri=http://purl.obolibrary.org/obo/CO_341_$1" . + "https://www.ebi.ac.uk/ols/ontologies/aro/terms?iri=http://purl.obolibrary.org/obo/ARO_$1" . +_:N4580d59588024cf39f91202e8dade091 "TAO" . +_:N2f8b7113f11e4a51b8eed9314795fc77 . +_:Na65323a476cd4cf9b2d6fdb5942bc4e1 . + "0000008" . + "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information." . + "liumeng94@sjtu.edu.cn" . + . + "https://identifiers.org/chembl:$1" . + "Bio-Pesticides DataBase" . +_:Nc5f4f99e79ed47509ab2540347b4ef1a "wikigenes" . + _:Ndb9cbfabb93645ef834e33a03d41c767 . + _:N8b0ced31dab145ffbe728d4bbeb46f75 . + "MIAPA Ontology" . + . +_:N90e3371da6b44d8e8a2522f93d0d0de4 . + . +_:Neded352f67324ec98daed98c0f272741 . + "Golm Metabolome Database Reference Substance" . +_:N3c10d4d54d6447318304eb8fc54219c9 . + "false"^^ . +_:N64bdeccd7c45488297e63bf9d24b5098 . +_:N056582aae81c485494bb426b2931a622 . + "https://identifiers.org/disprot.region:$1" . + "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes." . + _:N32cd267605f44a18848372d5fddec167 . +_:N8853b3e109af4ac6b5ab76115bad8efe . +_:N53847fc234244905948e07a9ffefe165 . + _:Nb1460160128b4e8f9af9499a6a28079b . +_:N8eed0c4198ce4b14a8dd56bcdace5c4e . + _:N4861324712544b5f87f5a179c365edc4 . + "false"^^ . + "https://identifiers.org/lipidmaps:$1" . + "https://www.ebi.ac.uk/ols/ontologies/cido/terms?iri=http://purl.obolibrary.org/obo/CIDO_$1" . + _:N4d1156a1f21d45a9acdd599c927ba33a . + _:N78e3b8a5166344c4b6f8835fb1d3733a . + . + . +_:N29b21a4d2b32496f934f1d9e44817b05 . + "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract." . +_:N5c869dd7d037412fb27fea8a6514db92 . + _:N044a22f95aeb417aae625ef33f90d036 . +_:N626a8320525c4003a0157d9f37e33c9b "RESID" . +_:N9b7038963fb443e589f1f41412625cbe "MedGen" . + "true"^^ . +_:N7ac7aa7ad5db40e0a75d582c521f7097 . + "None" . +_:Na5fd9900a87a490e8e22efc24b6ea48c . + _:N2f8e4b27b5ed447697c8ddf7b4fbd37d . + "^\\d{8}$" . +_:N46d2f9848ec74b80bc4e8c1a95f5fd18 . +_:N640b034223eb44a894921b06e8bcaa90 "zeco" . +_:N13a737919a6241aba998e674d3c65f03 . + "false"^^ . +_:Ne49579a5ccd34e4398530ace4f4548a4 . + "0745-4570" . +_:N63359f48580c440aba2da2a03f0750de . +_:Nf84b13d2096043299b21a882561e62ba . + _:N59574c1789384e2783a79fdf274eedd1 . + "false"^^ . + _:N4320457477d64cb8a02d58c552439134 . + "bgee@sib.swiss" . + . +_:Na591b75df5354042a42de6d8ef86618d . + _:Nbbc2e2a573b349efb36df121fb88eb2b . +_:N306744fd6891485baa0314f63b446431 "atcvet" . + _:Naf52fa41475441f89dd17542fec2c421 . +_:Na6932967b81f42a0ac2abb314ebcea79 . + _:N31a558f1d8ea44d28dd9028c992b5335 . +_:N20fe3cfbe4bc459f8ea76dde253f81f8 . + _:N3eb85224315d47b1b085d8439c0ff353 . + "None" . + _:N544952f6e754449db545da3e30d063c9 . + "0000858" . + _:N4875c9bb414d4e0fa0dbf590a9fd7d6d . +_:N0e12672811fb4e589033a49b062f56a9 . + "PRotein Ontology (PRO)" . + "false"^^ . + "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds." . +_:N2b48368a1af743609546e1f980fa3cb6 "AGRO" . + _:N64bc2774be114757af571adf4abe4116 . + _:Nfd33b5903abf457eb2fbdd05d6c5b2e6 . +_:Nf12d9baf719a43758ae1069043a328f9 "ECHOBASE" . + "0000091" . + "http://www.gramene.org/" . +_:N8f786b8d2e0b4bf99f4a6923213ef603 "dlxb" . + _:Ne141d82c3b504833a18a3d2195642ea3 . +_:N8a80f4bd8cce4c7e802ef5b81688b9ac . +_:Nd8694eb4e3db4e0da68c04ba48a2d13d . +_:Na9cabeb8f977496483ff483a3cd2645f "umbbd.compound" . +_:Nd0adf289afda4e1da27aaacf41775dd6 "SYMP" . + _:Ndeaf53cf76cf4df0995815aecb694682 . + "None" . + _:Ncd738344806e453b99fb485d8c10ad14 . + _:N267b770c69f94414b0a55d5140ab4bba . +_:N5a4550e9664c48a79de9ae513dab2e66 . +_:N020a5d3deadb4e73a36e27cef2228de8 . +_:Nbbc2e2a573b349efb36df121fb88eb2b "noncodev4.gene" . +_:N5af6e26210c2493eb9d685a4d581fc25 . + "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance." . +_:Nb07db8d85c974ccca983365be5752541 "homd.seq" . +_:Ne151a8911f024f579d3215c11e0cfac0 . +_:N13d9dbcf3f5745e1b489eb0c3abada20 "PRINTS" . +_:Nbb1e92a438e549d2850dee2b56fa82d6 "ecyano.model" . +_:Nd44f9958fa27402a84e1fb08155ebff3 "massbank" . + "https://github.com/jannahastings/mental-functioning-ontology" . + "None" . +_:N2928052771e74ef9a5da993f427862e0 . +_:Nc8240a3f41b942bc952e16d9dd48bb40 . + _:N34fa1b0123384afaa68901b49e6e9e5b . +_:N267a71fbc3c4488aa9a798d65281fe90 . + "None" . + "http://www.genome.jp/kegg/reaction/" . + _:Nd8b87e83734b406b803d7cb5fa63e109 . + "https://github.com/evoinfo/cdao" . +_:N1ab4affee697458089fa3db3b3f346d5 "NMR" . + . +_:N10a41bd70c3b464287e4638739522678 . + "REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data." . + "Bactibase: a database dedicated to bacteriocins" . + _:N160cb4698ff044ef9e1a24c740f08a3b . +_:Nc47b286a162c47069cac54f85f084c62 . +_:N05c7cefb36324d4c8a303c3c722aef09 . + . +_:N3a0531692bce495ba8a872fc12ccf954 . + . + "false"^^ . +_:N51b952f85a8c4930a0c495d2ea0c49a6 . + "https://identifiers.org/mesh.2013:$1" . + "None" . + "CompTox Chemistry Dashboard" . +_:Na5f5bc540423459bbd15e1e59b72b7e9 . + "false"^^ . + "noctua.geneontology.org/editor/graph/gomodel:$1" . + "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive." . +_:Nfe1f64f2df5346d2a37a1079c5e32e57 "mir" . +_:N43769bc2f45a434a9b6e46e0b21ba5c8 "HGNC.GENEFAMILY" . +_:N6b70dee5422f49a9b89cc06cab793bb1 . + _:Na4a049dd5cbc49c59471439e68bb54f2 . +_:Ncd2f541fb2864f1b98fb33326966d3a5 "tair.protein" . +_:N8ee046eac27f4351a55c0783337f06c9 "spp" . +_:N8dae0ebddda74e6eac2d650e06f0d858 . +_:N29c2adfc8ce743cc87e4e458cd271659 . + "Peroxibase" . + "false"^^ . +_:Nfad10b490ea648cf91a8547bc48e25c1 . + "g.gkoutos@gmail.com" . + . + "true"^^ . + "https://identifiers.org/protonet.proteincard:$1" . + "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time." . +_:Ne29254c63a404a84b5b1ff429fc6999c "TOPFIND" . +_:N4faf4cbec11d464d8ef57d266092c2da . +_:Nc47b286a162c47069cac54f85f084c62 "affy.probeset" . +_:N94ddb01e2d554a3fa0649ac403071a08 "ATC" . + "None" . + "Maize ontology" . +_:N5b246ef0360b4866a4902d33f8ef6000 . + _:Nf12bb0b66bdc4afcb936b1511512ea97 . +_:Nf820109c6cef4fb0b1d2a628865a317a . +_:Ne3e681233b06478c9387b472084661dc "teddy" . +_:N28cff03e97b44a23948e18af00ada044 "MFOEM" . +_:Neca7cb8c0122483d978a9d352217c03c "co_366" . + _:N51b952f85a8c4930a0c495d2ea0c49a6 . +_:N333b3190fc2041a7a2e0d89532782d09 . +_:N5ec0a2e6e91447a08f96a8135fb6c60e "xl" . +_:Nee8839f8d1054265a59cd9a209895ce4 . +_:N613cd7a7aab3451bab9f2f2597b1c3cf . +_:Nfd84f716ff75480fbeccd6904764af53 . + "Simple Modular Architecture Research Tool" . + . + "false"^^ . +_:N6ef46042796f440dabcf977213eae595 . + _:N76c00db8ef44470c8db7626f50ac7469 . + "Assists in resolving data across cloud resources." . +_:Nfd84f716ff75480fbeccd6904764af53 "BINDINGDB" . + "false"^^ . + . + . + . + _:N1dac07e93cf246ec99621eae7e6409af . +_:N51ea3473b94b411d955a9f4230391544 "ligandexpo" . +_:N2f8b7113f11e4a51b8eed9314795fc77 . + "helpdesk@cropontology-curationtool.org" . + "None" . +_:N2cc2ea9f6f9648c4ae6a855b5729b902 "dommino" . +_:N7359d206964e4e979a7818af4318fc9c . + "https://identifiers.org/ecoliwiki:$1" . +_:N9f58eb2dd67e47c1b4203257529a1065 "cmo" . +_:N72face36a5f34d06ade62aecce227278 . +_:N31ed7b4787724efc89c62dd5152b5d4a . + _:N2feac3e5a038471fac5d25e3cb0aebe6 . +_:N8c31c174ed9f414098e1b7efcb82d281 . + "https://identifiers.org/kegg.compound:$1" . +_:Ncbc0b45c7da4482493fb037cddfadf27 . +_:N3af91a2840d640fa87b0ddf879ddd7df . + "KEGG Genome" . + "false"^^ . + "false"^^ . + "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession." . +_:N84b38c97f16f4cb1a422d8a2b724b769 . + "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1" . +_:Nfd3da05d3e7b44b0ace7fbfd36ce426b . + "^[0-9][A-Za-z0-9]{3}$" . +_:N6380355c422d45b9957d137f59637cc7 . +_:N31dfc30729434f92afce65821c4722ef . + "Spider Ontology" . + . + _:N6e0737958b9f43d385ece6a6bbad8079 . + "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d" . + "false"^^ . + "PharmGKB Pathways" . +_:N5828c5ea542f4617b1e9f1d999790695 . + _:Ne259d21f19a6401fa31720f2a506f657 . + _:Nc25d42d228bb492798ce68c6f3027cb4 . + "BE0000048" . + . + _:N2f8b7113f11e4a51b8eed9314795fc77 . + "^\\d+$" . + "^\\d+$" . +_:N9a69dedfeb0c48059214303b842195f5 . + _:N1024cd858750460cb6ab48e667ec01c1 . + "RiceNetDB Protein" . +_:N826cd6a56a694c2ab8c6f85e103b1507 . + . + "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target." . + "false"^^ . + _:Ndbf4c6e662cd44c08a4c4921f247f7e0 . +_:Na5de20799b3146e69c7f382fff739d13 "ido" . + "false"^^ . + _:N5600aa5c4c5c47df9f89976d248485d4 . +_:N46c9efce09144788ade45415316df734 . + "https://www.ebi.ac.uk/ols/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_$1" . + "Mouse pathology ontology" . + "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology." . + _:N2a808f990d2248fe80b94d63c612bd9e . + _:N5b5dd646199042e7a915caf5d428990b . +_:N0cec9486fde94c9398be40f67deeadd0 "stap" . +_:Ne526831af9e14f78be026653faa083fa . +_:N363238435e604c40a221580b15889143 . + "http://www.w3.org/2003/01/geo/wgs84_pos#$1" . + "^\\d+$" . +_:N6fb39844caf14f31889e6b0f22091aa2 "EchoBASE" . +_:N197e4d79a0d741d696f5e906f7f9ae42 . + "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$" . + _:N54de5aa3f0364e399d91d1e290ba28ab . + _:N7c53635044124c04ac1d3482c1b9584d . +_:N7cb6e995c48448a99ac9c91c31d01280 "ttd.drug" . +_:Nc989b1f549a948b5bc1bc3b1d85f57a6 . +_:Nd55c236bee914b1d84274e08322cdd54 . + "Human Dermatological Disease Ontology" . +_:N9b495c2d5e8144bda92dfa7aef7d6ffc . + "false"^^ . + "http://www.proteinatlas.org/" . + "Ontology of Medically Related Social Entities" . + . + . +_:N2117d326d9554a74a9a0c534de46de44 . + "Bioinformatics operations, data types, formats, identifiers and topics" . + "^[0-9]+$" . + _:N230490758d85400b841195cb7a23a684 . + "https://github.com/allysonlister/swo/raw/master/release/swo.owl" . + _:N90bc94e42b974917bfe4fbf08a37c220 . + . +_:Nca412814693e45e693942494a16d9ad8 "wikipathways" . + _:Nd98b3eaa973e4bb6b5d1636c8a6fb148 . + _:Nff2b975dad774c0c9c2ec8441d38dfe2 . + "^osa-miR\\d{3,5}[a-z]{0,1}$" . +_:N5edd1bbc7c214012a0b9604db570e231 . +_:Nd774da32d2ab4afcbd95088220b47a06 "BOLD.TAXONOMY" . + _:N07b7b653658b44a7b5cdeeaaf9834677 . +_:Nceb92dc1652349e8983e25009fede9b7 . +_:N21ee9b55b41e4f0c8c8b698f43af463c "antibodyregistry" . +_:N319a44f69562452ab8ef81d0e2053292 . +_:Ncb4d042baaf5467688e1ecad71985410 . + "^K\\d+$" . + _:N42a80997bac644fc9518f077a9a54670 . + _:Ned37ed6454594a9881ab631a56a3e010 . +_:Nb0227452710445a1a5790688d5189c6c "gold" . + "14362" . + _:N1535adae405c4fda8e2de017844ab66a . +_:N7f29f7dfbd0d4d2388b655569d7632f7 "niaest" . +_:Na32a557d0f88466da02ef0ee9f4c0ddb . + _:Nbd3857d53da147299b20034349498033 . +_:Nf801b1d6f03d4d47bdeb3e63822756c8 . +_:N8c668438debb457e935e5d06ad2a9e96 . + _:Nd69cf98f94c541c7aacd97bde43110af . +_:N192c789ea5fe45ba82ff48c1dc5cea98 . +_:N65d07f49b7f3479487e3323b6b79cbb6 . + "^\\d{8}$" . +_:N236f3925dab64a23b7d47fb4df870d9f . + "0007114" . +_:N29a65518c1ec40fbb4e7de75f39e2e8c . + "allyson.lister@oerc.ox.ac.uk" . + "huang@southalabama.edu" . + "https://www.ebi.ac.uk/ols/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_$1" . +_:N1c8f695123cf439ba43f3f3084d00213 . + "http://greengenes.lbl.gov/" . + "None" . +_:N882541559c8649528baf3b8cf306a0ad . + _:Ne779e778063b41949b5b14179c9a65cd . +_:N6e7b913763004999855db336399a53b9 "WIKIDATA_PROPERTY" . +_:Nab09337dde314e23a8837992bb5f55b8 . + "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families." . + . +_:N587324241b8144eda5115471adecb0ec . + "http://www.receptome.org" . + _:N145c70201436477abc8250897e5ea694 . +_:N8df5f0e08e894cfc9805fabefaa3faf1 . +_:N21ff48392041431898b89b081c3d324b "PSCDB" . +_:N5b246ef0360b4866a4902d33f8ef6000 "ARDB" . +_:N748c7e36009b434eb7121dc7efab8285 "maxo" . +_:N4a0700cea95442d38204c90759bea97a . +_:N13bd727b738d42a1b8cd3935da53532c "bigg.model" . + "https://github.com/cido-ontology/cido" . +_:Nbdad26c0005b448793cb1f32ce4b2c05 "RNAO" . + . +_:N188daae7c3da47879d9345874c6381f2 "ARO" . + "/12345/fk1234" . + _:Ndd914931b0e54ea2b293f7cecaf09b36 . + "Open Data for Access and Mining" . +_:N992e1d6637f24413b309776e885650c5 . + "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent \u2018all\u2019 of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes." . +_:Na5f5bc540423459bbd15e1e59b72b7e9 "glycomedb" . + "Animal Genome Sheep QTL" . +_:Nfdca8cd53df0492fa467d904eb20c195 . +_:Nc76b30f287e445bda1be7eee3f83aa2b "CST" . +_:N515efdf0640b4129acb462fc38ddbeef . +_:Nc76b30f287e445bda1be7eee3f83aa2b . + _:Nb429cb01cfdc4ff081febf56fc74f6df . +_:N0cf601d17637477b8fa8b54949a008e9 . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent." . +_:N8730ffe23764496b94649f3643c13ca8 . +_:Nd074d13c63424f3bb0b0b8cbb607b651 . +_:Ndfc7ada3dcd94964906539f710708cf0 "NEUROVAULT.COLLECTION" . +_:Na6932967b81f42a0ac2abb314ebcea79 "P2870" . + "None" . +_:Nfa29d24b50b14399a6c3538dd1096fdc . +_:N1221925c5eab4bd985c5026cf78bbbe2 . + "^[A-Za-z0-9-]+" . + "false"^^ . +_:N0d2228ebde684837802eded67aca3402 . + "PXD000500" . +_:Nd36d36c03f5041f5b3bfad3fd819d9c2 . + "https://identifiers.org/uspto:$1" . + _:N1c7a73fad7824b50813a9cf19e08aaed . +_:Nf4559e715dc54311870651d5701fac2c . +_:N83259a18a1184b20ad91f57d5b6e61c7 . +_:Nde0151d00a7d41efb4b6a3a2abb3b664 . +_:N498ec71c672c487faf82e641d72ad168 "ONTONEO" . + "https://identifiers.org/cellosaurus:$1" . + . +_:Nd77fadeb3a46420fab9b68558de20ed7 . + "http://www.arabidopsis.org/" . + _:N2207cb9825ca4857a99377e9320bd4ca . + "https://identifiers.org/jcggdb:$1" . +_:N90e1b6296d3b465fadaa34eb45047a38 . + _:Nb95b9bbf48fc426698235588eae3e4d7 . +_:N5bb4aa9d0dc64309a43ed7eaa3d7b260 "prodom" . +_:Ne762f0f356cb4752b981e2e8cfea6f56 . + "CA981206459" . + "https://github.com/semanticchemistry/semanticchemistry" . + "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information." . +_:Ne141d82c3b504833a18a3d2195642ea3 "DRAGONDB.PROTEIN" . + "None" . +_:N7820932cdcab43ce847935d3dc8bff59 . +_:Nb59b8523035d4e6fb2f1f15ccc2c0953 . + "0000001" . + . + _:Nbae3f946f2434e309dc600ffcb974186 . + "app-d678n-tottori" . +_:Ncdfccbb33efc468ba76c75d24ec1610d . +_:N94f1c346526741799e37c41ca97a276e . + _:Nc3da6d65562e42ac9baeac0e84ea1827 . + _:Nf3feb006bf1145f4b171b4eda07e6e85 . +_:Nbc144c07f23745d8b84755abb8e34dcd "ec-code" . + "^\\d{7}$" . +_:N8a7bbc0367eb4477938cd72dc336ae08 . + "^\\d+$" . + . + "false"^^ . +_:N935c8868a5a1424ba049aa0bda278232 "cst" . + "false"^^ . + . +_:Ne664aab8c2b84b869c9b0913a7e9224e . +_:Nf1e2e126374c498c86efba0d07be6da4 . + _:N423adc2a6d4041fa9b39304f87e99e8e . +_:N0b681a875856491ab7747eb6afaf6cbc . +_:N55fa236fed974add9ed021eb9e9b977d . +_:Ndd88c16b045b408491f60144bc56e36c . +_:N889f340812924d4b9fc7651c93ab348c . +_:Nc7c104e343694608b6271fe54a9a124c "cazy" . + "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs." . + "Nucleic Acids Phylogenetic Profiling" . +_:Ne26dec5ea2d04a29be75e76e1894782c . + _:Ne758d9770ac44554a2f95eb05f8d7d76 . +_:N24d6e1947a37488ea88d10bcc667553c . +_:N891a4928c2714e2d9f5dcf0e8c2e9128 "bdsc" . + _:N5828c5ea542f4617b1e9f1d999790695 . + "https://www.ebi.ac.uk/ols/ontologies/ogi/terms?iri=http://purl.obolibrary.org/obo/OGI_$1" . + "Mungbean ontology" . +_:Ne538eeff909d4f06ac7cf995b7c5f246 . +_:N94426dd100154efdb1fd9d2cbc451dde "ZFA" . +_:N0c0863ecb98342d2a0ea0aae41946bdf "neuromorpho" . + "None" . +_:N4f902af567dd4f769af48d4ae56beed3 . + "None" . + _:N87e64bacb936484f81f1b7ad129098fa . +_:Na936daaff55e4bdc91742f1e69dad902 . + "https://identifiers.org/dashr:$1" . + "None" . +_:N575376cffe8b4341a40d43f2bf3eaf90 . +_:N495837cceae144acaef59aa48f0a4ce9 "doqcs.pathway" . + _:N52d106caa6ef47b192e1dc1937bdaa6d . + "A vocabulary for cattle, chicken, horse, pig, and sheep breeds." . + "http://www.issn.org/" . + "^ZDB\\-\\w+\\-\\d+\\-\\d+$" . + _:Ndbbcb701367746659991b1cc2718edfe . + "^(\\w+(\\-\\w+)?(\\.\\w+)?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$" . +_:N6b72f1a1cee04a2394cb1228813c3f85 . + _:Nd4963553bf81446a9d6b764d1e8afc9b . + "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. " . +_:Nb4956f7720474bedb9d9363bc8535f97 . + "false"^^ . + "false"^^ . + "RXN-14904" . + _:Ne61c31f0777c487cb961657663152195 . +_:Nf366671c3afb44f2b97cc6d586b308f5 . + "https://identifiers.org/tol:$1" . +_:N2f8e4b27b5ed447697c8ddf7b4fbd37d "FMA" . + "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage." . +_:Nfb67ce57a0f44f54b1e10500bfae963e "pride" . +_:N98ad7bc51db84276930ba2dd2eaaf978 . + "false"^^ . + . + . + _:Na76f7e7ba8004083a22786074dce1e7e . + "https://github.com/OpenLHS/LABO" . +_:N9f9e5e361adc4e17accb95bbb47e7196 "COSMIC" . + . +_:Nddba05267b594856873311d52b838059 . + _:Nd3d5ae4fc1a6417f99c73b660e89f348 . +_:Ncaf0a4b9b03c4b8fb4e8773e1f11e89e . +_:Nc19f91f0bdb94508bccde79baf337948 "PANTHER.NODE" . + _:Ne0f95a77c3ae440fafc3cba482a97c18 . + . +_:Ncb9917b58df64b37b8404efcd69abb80 "xao" . + "false"^^ . + "Subcellular Anatomy Ontology" . + _:N57179732e4ab4fa7b09cae451e6903a7 . +_:N8584e3a431764315a6382f33f91a2a0a "BYKDB" . + "^\\d+$" . + "https://identifiers.org/pubchem.compound:$1" . + "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical." . + _:Nefc6379ac4154f5dbb4f638c3451a910 . +_:Na904fc53370340c2abb1f74baa9f22d4 "orphanet.ordo" . + _:Nc544bdde24ef40b386ed27a12a97c6cf . + "CAA71118.1" . +_:Nd0adf289afda4e1da27aaacf41775dd6 . + "^FOODON:[0-9]{8}$" . +_:N093988891fe64128b8fc54f4046aeb49 . +_:N46dcdbddcb1942f0b79061945fd06503 . + "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created \u201Creference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools." . +_:N2a0049d3c12c49ff982026591a8b2538 "BROAD" . + "959" . +_:N31e2876877c84f76b7fe856e84a69b04 "probonto" . + _:N9068c2d7575f452a8f349467fc8a1222 . + "None" . + "https://identifiers.org/ga4ghdos:$1" . +_:Nfae1094dd6c5436a8cce2f9b5c00443f . +_:Nd64ac32b8b4c4409a1917090307e979a "P492" . + _:N6544b06e047f494fa6fecbd3c5d3b7cc . + "true"^^ . + "0001707" . + "false"^^ . +_:N9d1c2262a5994b258750f78377039482 . +_:N8100f09f4a4b480eba05701cb43859d6 . + "None" . + . +_:Nadb66795053642739f6ad422f4d5d1ff "PROSITE" . + "https://www.ebi.ac.uk/ols/ontologies/sepio/terms?iri=http://purl.obolibrary.org/obo/SEPIO_$1" . +_:N0fd2f9ecf4884319919b5525e8c778c7 . +_:N2c8a9260917c49d3b47ca31d3a8d7488 . +_:Ndd914931b0e54ea2b293f7cecaf09b36 . +_:Nc7c5ec27739c4c61b1825b44052bbf32 . +_:N0a5e802f227e437983e1c621cdf74508 "DATF" . +_:N74c1bc675fc14bbe9d62287e6dbcac81 . +_:Ndff7a38b0e884dc1adbe45a295627e9a . +_:Nc214d271b9674572bb86e0e0e3c1ae1c "fbbi" . +_:N79f7f02d40dd4bad81f1677ac882ed5e "AEO" . + "Development Data Object Service" . +_:N64bdeccd7c45488297e63bf9d24b5098 . + "false"^^ . + "false"^^ . + _:N8a76711727364db987824a7ee964a8e5 . + _:N7ac7aa7ad5db40e0a75d582c521f7097 . + "None" . +_:N809c3ab6cfc6451ca994fcfbb2525c24 "SMART" . +_:N8eed0c4198ce4b14a8dd56bcdace5c4e . + "^\\d+$" . +_:N497341331c4747e998a19ac709517dc0 . +_:N65b031ee5c70414a8a8bd2c47c95e24f "rbk" . +_:N643babdf9eb04f1fb06ae356bf1a9dad . +_:N09a4c8d5cb3e45c1ad495f3d3ee16692 . +_:Nf75cb8e6c76f44caa7e5258cd9822940 "TIGRFAM" . + "^[0-9]*$" . + . +_:N8c8d8931c9564a9ebe6a0e2b1af36342 . + . + "false"^^ . + _:Nb8de8d3388464cc383449485e8cf0a79 . + . + _:N17c80100d176465a8a2352247496901a . + "false"^^ . + "^\\d+$" . + . +_:Na9dcc74989624a2589d1f5c4c423c142 . +_:N8e6179158be2458b8707e509f7f0ae8e . + "CQG5" . +_:N15345c852cec43f5be22c82af37189f2 "OPL" . +_:N46d2f9848ec74b80bc4e8c1a95f5fd18 . + _:N97543da0a3994c94b8d3de9cd7c5ce5a . + . +_:Na9901f06306c44c4bcd541b81bfeeba9 . + "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$" . +_:Ndd914931b0e54ea2b293f7cecaf09b36 "wbphenotype" . +_:N656272c74607400294159953e2bc6bb1 . + "helpdesk@cropontology-curationtool.org" . + _:Naa53dcd0832549d8a9191e684686f397 . +_:Nf1b61650628e4965afd67d3a9466b6ab . + "KNApSAcK provides information on metabolites and the\ntaxonomic class with which they are associated." . +_:N7a6be50c636d45de8afff291b21a46fd "mgnify.proj" . + _:Neffe489d8ca4421c84745a9cd2a7cf5e . + _:Nd682702553014dae959466074a9cf58a . +_:N65b8dcb490f3427caebc8f3f01dfb1c0 . + "Minimal Anatomical Terminology" . +_:N067d8dfb07fd4a21bbcaa6a4c048f2e9 "P3937" . + _:N39828499f6c546bda7f28fee6b319c0b . + "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests." . +_:N1863e15044a54767809e9a5b0b68b266 . +_:N8a7bbc0367eb4477938cd72dc336ae08 . + "EBI-2307691" . + "AY109603" . +_:Ncb1ccf9d4cea4b4ca91dc6b165eabef7 . +_:Nd53b4acea8b045899a61c0609d37c2a6 "amoebadb" . + "PGS000018" . + "Gene Wiki" . +_:N6e9c3ea82da6409fac3fbb945aac0769 . + "hoganwr@gmail.com" . +_:N7ba1934fafd540b287979dc4c0c75f67 "hinv.transcript" . +_:Ne75997fe12634b189e4d5e710dd6e126 . + "false"^^ . + "Allotrope Merged Ontology Suite" . +_:Nf549131f774d4d91aeb792bd31dba447 . + _:N48ca195bbdcd4015979f43e949089b42 . + "None" . + _:Nb2d64ed027614182bc23006ee5c74d21 . +_:Ne226a73011ea4994b717b628edf842ac "arraymap" . + _:Nbd2e633ffdf5408eaf049dbfbfd50587 . +_:Nfe777c3588ab4d45be1875b9a35dbd59 . + "https://identifiers.org/ascl:$1" . + "None" . + "https://identifiers.org/matrixdb.association:$1" . + "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles." . +_:Nc141bd9e57c44d3c9cbfbf8541a77092 . +_:Nf57ef7763459434c9ebc5f219e9e4036 "TRANS" . +_:Nd3d5ae4fc1a6417f99c73b660e89f348 . + "GWAS Central Marker" . + "Ontology of Microbial Phenotypes" . + "LMPR0102010012" . + _:N0f338ff81db24e72a3707176351ba4ec . +_:Ne151a8911f024f579d3215c11e0cfac0 . + "None" . +_:Nb8ed4d6fc4c64439bcb715ec59c5494e . +_:N5aa478ac516f49c1aa82c9a623aa7fa7 . +_:Nda64ad3fa41049ea883e5b2db5cb4559 . + _:Nd8569863234046bda21946867c958e0d . +_:N487d8b81347940b8a6b4cfdd917cdb52 "VZ" . + "https://pbil.univ-lyon1.fr/databases/hovergen.php" . + "^(MNXR\\d+|EMPTY)$" . + "0000630" . +_:N27852c2927f045309807407acf4a6e4f "CHEMINF" . +_:Nbc7d50719f8d45e5ac2fecbab07a8730 "macie" . + "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$" . +_:N24016b4535b14b2bad8a8d417ea26f48 . + _:Ncadade484e1e4435b403a745c811b71d . + "2555646" . +_:Nd5e7d720031b41b9ac8d3efb0d6c261f "VIDO" . + "https://identifiers.org/ecyano.model:$1" . + _:Nec8dca041d08498c9316f38f7d0eaaed . +_:N30373bc4d6e04750b86d54f1364cfb56 . + "Oryzabase Strain" . +_:N79019a1f2e2b482396490f71fd8be002 "DRUGBANKV4.TARGET" . +_:N55fa236fed974add9ed021eb9e9b977d "EnsemblMetazoa" . + "https://identifiers.org/pgs:$1" . +_:Na5f5bc540423459bbd15e1e59b72b7e9 . +_:Nca53eb92dd7c4800815ff81bf72173ea . + _:N7333727dd400482f83771d24ac1554a1 . +_:Ncf98a29ad9094b7d8d5fb1d38da2d299 "NBN" . +_:N73a0d744f49540c9bfc86b861b99100e . + _:N287182f606e54b50abb164de685bbb25 . +_:N22428da90b604d75a6a5ee5baa4c7175 "DEPOD" . +_:N861fdc6bafd7478e8ecc9bc9f1bc4a8a . + . +_:N8b795d19992b4ab0a8fe7f92907a10e4 . +_:N22012ac256af4f259473ef56bbd5bd41 "duo" . +_:Ned26d0e4299b48eebed668669a029665 "Xenbase" . + "ev:E00032" . + "false"^^ . +_:Na15c520ef884474094b069bedc2480c6 . +_:N3747c03b654e4dd2bf6bc01d5e92ffe5 . + . +_:Nf1c99fdd0cd24b3cbe9c83fb1b0a8714 . +_:Nfad10b490ea648cf91a8547bc48e25c1 . + _:N72d57f6c41a84bba96ff18f35531cc19 . + "None" . + "KEGG Reaction Database" . + "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets." . + "https://www.ebi.ac.uk/ols/ontologies/pco/terms?iri=http://purl.obolibrary.org/obo/PCO_$1" . +_:N6a72682a5daf4c3e871131e169c6a5df . +_:N76296288a50f44359cd1be38e108157d "phipo" . +_:N5d96e6d2d63e4ec4bee65745168e5d5b "pmap.cutdb" . +_:N4faf4cbec11d464d8ef57d266092c2da . + "false"^^ . +_:Nd77fadeb3a46420fab9b68558de20ed7 "CAS" . + "National Drug File - Reference Terminology" . +_:N2a683facfcd0463b80f785b35d5415ac . + _:N5a3d9157764c4c50860bf960aec94d1c . +_:N7f70ee37e1374386969a9306e841f3e8 "OMIABIS" . +_:N41d2b2341fd34085b421d2999ac174af "nbn" . + "false"^^ . + "None" . + "HEX1" . +_:Nf56303bf62b344ebb78e07074d3bf902 . +_:Nb2918255b714408899a810d2999b4d1d "CID" . + "false"^^ . +_:N613cd7a7aab3451bab9f2f2597b1c3cf . + _:N0da49d7a03564dc59df13a8e56052fdd . +_:N53a5148bf47047ad8c626efbc85e7212 "kegg.metagenome" . +_:Ne0c896ec02d74d0a890f6e1583856eef . +_:N35889a42b15141dd848bbc2317573000 . +_:N4aaa4fc21d4e41f7a12672842f9ab9e5 . +_:Nd86c77ebeddf450d80d7e3afe63512a1 . +_:N7d42467cccb94a148f2aa536303c8c6f . +_:N806d6c3ea0a347f19ed4a102ffa1f4ac "RefSeq" . +_:Ne1f63c5865d6433ea9bac7c4f1c6c481 . + _:N22965f4568914cfebac7b43b7c81c104 . + "false"^^ . +_:Nb8e1a056e7fc4ccb82a54586b1338f56 "OBIB" . + "https://gnome.glyomics.org/" . +_:Na7b4be97d7024cc79f78ac88dfbe741f . +_:N90d257235fc64a51896afe120435496c . + "DAPK1" . +_:N3d614d4804384a46a9ae00a3b8780c20 . +_:Nbcbdbbf26f3a4f2497cf4725f6a7809a . +_:Nf9e69f78d68b4a21b19942ff83588597 "Rfam" . + "false"^^ . + . + "https://www.ebi.ac.uk/ols/ontologies/wbls/terms?iri=http://purl.obolibrary.org/obo/WBLS_$1" . +_:N31ed7b4787724efc89c62dd5152b5d4a "P7001" . +_:N1d7048f17ede4b5ba4318dec3ad78df9 . + _:N1c8f695123cf439ba43f3f3084d00213 . + "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways." . +_:Nd458b6010f6b4a1799c200028d6c12ce "FIX" . + _:N19c5906a718642d0a0b283f1513f3d37 . +_:N2d3e1f672f7a4127aaa8f9cd82592ae1 . + . +_:Ncbc0b45c7da4482493fb037cddfadf27 . + _:Nb952f46674e541c2a9ab1e56dcadc022 . + "false"^^ . + _:Na9ac292012944664887b4ab7b51978db . + "PA448710" . + "MIPModDB" . +_:Ne642bd06a6b248c993edd23c0c43cf86 . + "Zebrafish Phenotype Ontology" . +_:Nd5977cfd97d4466b8992aaea1bcd0f1e "miapa" . + _:N2a5079da6dbe4bc2a9f19b3302cf91a7 . +_:Nfd3da05d3e7b44b0ace7fbfd36ce426b . + "http://scipion.i2pc.es/ontology/cryoem" . +_:N363238435e604c40a221580b15889143 "WBBT" . + _:N5cae092f195a4680a6f30fbb020aac4e . + "cjmungall@lbl.gov" . + "ImMunoGeneTics database covering immunoglobulins and T-cell receptors" . + "PaxDb Organism" . +_:Nbeae19dab7694fc49d27c85671e76c84 . + _:N267178e4554b4807a2d5b9e085eddb4c . + _:N63109f81ba144f1cbd35c231fe1c329d . + "https://identifiers.org/depod:$1" . +_:Nd8a1ec81192247ab8f26499bc922bdf2 . + "false"^^ . + "None" . + _:N45badbc31f5a411c801f780cd95125c7 . + "false"^^ . +_:Na01bfee6cf624720bdb44bf11656ed55 . +_:Nccd74157f05f45f59692afb17dcda6af "STRING" . + "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance\u2019s molecular structure and/or descriptive information." . + "00620027" . +_:N03992d583fed410284fd121b2572b270 "sdgio" . + "false"^^ . +_:Nf70925baf06540a1931af8a283077356 . +_:N0b3788d004e74875be5786469829ba7b "MEDDRA" . +_:N26bfafb341f044e1ae3b88a832f4f3e5 . +_:N29678e58a2f34abeaf60fb99e1ab7a1b . + "P01116" . + "https://identifiers.org/drugbankv4.target:$1" . +_:Naee7dbd63c054373ad702d392278c915 . + "false"^^ . +_:N60dcad7f378c402c8da98fbc3610aa86 . + _:N1d02e22c5de948cba0c0bb2295e6d998 . +_:Ncd9d1702468741f49ba5000caac24d32 . + "http://genex.hgu.mrc.ac.uk/" . + . +_:N012e73e24e164d5091f2ef68add1076a . +_:N2f19f215732b4b30b8205b996df358fe . +_:Nbcdf360f10c744c4b4151f6ed946e80e . +_:N469d2bfe1e914423afd45678443693c4 . +_:Ne46dea69930a412b845d197b70b80340 "proglyc" . + "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information." . +_:N13e7e2cb7b51427bb415ddb63eed5b45 "panther.family" . + _:Ne161e1e0802e4f84806633344bd5be6e . +_:Nb83ad953ed634896a5662808d3c08c00 . + "https://www.ebi.ac.uk/ols/ontologies/ohpi/terms?iri=http://purl.obolibrary.org/obo/OHPI_$1" . +_:N820269b40e62466faecbbca02b104ccf "TAIR" . + _:Nb4adbfb194134a6dab7f1c8af6b071c6 . + "false"^^ . +_:Nf1c4a0b4eb9f4988963e884c49ee12be . + _:N4d0eff72a5a941f6aaedb718990f5edc . + _:N09a5bf4ae4fe4bdb8d031f0d712640af . +_:N79a616c455804ac59e4ef20dac34ba8d . + "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm" . +_:N9cea9c81be6f4e299f214541794b6fec . + "false"^^ . + "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies." . + "0000041" . + "ftp://ftp.bgee.org/general/ontologies/vHOG.obo" . + "^\\d+$" . +_:Nf8c5b8b43afc400496c6fb13ce34e5be . + "^[A-Za-z-0-9_]+(\\@)?$" . +_:Nbc44e2bba07242e6b444d31aafe98d0f "MRO" . + "Ontology of Host-Microbiome Interactions" . + "None" . +_:Nf570f0b6bf3343d5b4587f9e6d7bb7e1 . + "None" . +_:Nb1a31193f6594c5cb036977036931d54 . +_:N0fc217b91d324527bef5a75168c74b34 "chemidplus" . + _:N88b4aa90c60a46159a83cdb0b070ee23 . +_:N2e7dcac0ddff469989cb0cb8eed6a744 . + "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects." . + "None" . + _:N2748778cdf614e80a162fb795826fc47 . + "20090303" . +_:N9148dbf2d6fd4b1bb547161cbb512206 "tritrypdb" . + "None" . +_:N5339f4621b7647b19825fd1287161cff "atc" . +_:Nb2e57648972948cd976e286a900a446f . +_:N0a9b0d406fdc46ef86915ca1167ac085 . +_:N85d987fe12614a5cb0546fb30b21c7be . +_:Nb516f903d44b4c8cb14ebff25e8db193 . + "false"^^ . + _:N7508b7994b404b079ea74ec87238dc42 . + _:N5baa1db724c543b689cd650c476cb2f5 . +_:N236f3925dab64a23b7d47fb4df870d9f . +_:Nfff1e4ebcb7f45b9a5953f18143de8c3 "exac.gene" . +_:N29a65518c1ec40fbb4e7de75f39e2e8c . +_:Ne2cc1b8f475a4321ba152f923ba7d828 . +_:Ndce6b5e61e674eb98226d729554d527d "insdc.sra" . + _:N5424c172bafb4d72aac9a37346b360db . + "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography." . + _:N5bc38fb1bb924ca6bfb78d889dce42fc . + "https://gsso.research.cchmc.org/" . + "Gene Expression Ontology" . +_:N4ab45f4532e44b788b0b9064f3a1766c . +_:Nb708e6eead714542b300b23f13dbe34e "subtiwiki" . +_:Nbdd66b6ba1af4401b9c194c560da6f4f "isfinder" . +_:Nf95c00c8b0b34fff8983bc5c0a83aa01 "bigg.reaction" . +_:N5ef49c39fa8e4408b6b8d107858616c6 . + "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes." . + _:N62c29c8160aa46b0a3faec728ce481d8 . + "An ontology of Drosophila melanogaster anatomy." . +_:N3f7a1da690f5410c9534a3267e53cf43 "nextprot" . + _:Nca53cafa713c44a59b7842174655baf5 . + "wasila.dahdul@usd.edu" . + "http://bactibase.hammamilab.org/$1" . +_:N629ed54588c446d3bb55fc8ee9ea3910 . + "^[A-Za-z0-9]+$" . + "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins." . +_:Nc431ae60df9a4a41817a6fa522f428f2 . +_:Nae88c5b2ef314923b4238073336d5ffd "pdb-ccd" . + "0000574" . + "^\\d+$" . + "0009089" . + "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines." . + "https://identifiers.org/clinicaltrials:$1" . +_:Nc0f552779baf4b719bd84b25e682ab38 "EMAPA" . + "^DRSC\\d+$" . +_:Nfb006ad11aa845d29c428d9210e7596d . +_:N5e15cbbe011c4875ab716028285dfd9d "ERO" . + "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances." . +_:Nda63fcc2e6b64682810c3f395079a01a . + _:Nad4d2ef1f7d3422c9ea8ab0c947a0d49 . +_:N62f70f197fc14f119a36b5151844fcf0 "orphanet" . + "J.Bard@ed.ac.uk" . +_:Nffb65aab7cff46049bcb3845b7e54a32 . + "https://identifiers.org/sgd:$1" . + "None" . + "http://obi-ontology.org" . +_:Nf06937b650cc4b9c8c8b476b4f021d0a "orthodb" . + "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1" . + "None" . +_:Nd936df41703242a5ac3f75b43e12115c . +_:N0e36fbde5bf04dbea8fc67a2ab4ed6ed . + "false"^^ . +_:N840f7144e5c44117b168134a42a3a988 . + "MaizeGDB is the maize research community's central repository for genetics and genomics information." . + _:N2c8a9260917c49d3b47ca31d3a8d7488 . + "UCR00226" . + "phismith@buffalo.edu" . +_:Na8eef67650b0413c90e64bd79158af6e . +_:N3586e4eea34149a2b6ee6b921f2014c6 . + _:N6b9fa6fb9c5c4829a3b4c97019b81eb5 . +_:N4861324712544b5f87f5a179c365edc4 . + _:N3834e6238e6d45e6aba6b45f32b21c82 . +_:Nada682e4394142e88850265be1c456e5 . +_:N3ec9d1a679fb4a678e53ece4193419c6 . + "https://identifiers.org/goa:$1" . + "false"^^ . + _:Nbc68e66bc28e4fa2b3152cdfa2182137 . +_:N5424c172bafb4d72aac9a37346b360db "IUPHAR.RECEPTOR" . +_:N9030a1777fe14c53a6faad91e1a0fa53 . + "https://www.ebi.ac.uk/ols/ontologies/ons/terms?iri=http://purl.obolibrary.org/obo/ONS_$1" . + "http://nematode.lab.nig.ac.jp/" . +_:N0676118ead1c4c1ea5ad6b30631b8995 . + "None" . +_:Ne762f0f356cb4752b981e2e8cfea6f56 . +_:N75f8180bd21548cab83926236ab6bf15 . + _:Nb35c7d4b4bac431f9026211d8ac18eeb . +_:N94f1c346526741799e37c41ca97a276e . +_:N180adeb98e224199af87a54ba29a404b . +_:N519e17f461e34a8789b636876cae0475 "PRINTS" . + _:Nc0f8075427e7431589a59cb91de386db . + _:N59d9c3d1ec0c4b28a58ffad08fce0e43 . + "19803" . +_:N4233096d45a745d8b598f4d66839d9d7 "lipidmaps" . + "^[0-9]+:[0-9]+$" . + "http://www.informatics.jax.org/" . +_:N0a5e802f227e437983e1c621cdf74508 . + _:N6f4f949a62694a73b983a073fdd5f2c5 . +_:N5828c5ea542f4617b1e9f1d999790695 "DEV.GA4GHDOS" . + "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM." . +_:Ndbcb9f6e10e74e6f94bc95fd653f33a0 "gmd.analyte" . +_:N79102903d6984b6e869d233f5faa8f51 "AGRO" . +_:N1095f176851840d19ae18c45b21225d2 . + _:N13e7e2cb7b51427bb415ddb63eed5b45 . + "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation." . +_:N2f1e61249cd440019e1481b89c1f50d8 . + "European Paediatric Cardiac Codes" . + _:N333a076b604c4ab482ac3ae9685a2504 . +_:N05c625c40b2044f9859d8c305e0d35b1 "MS" . + "12345" . +_:N0fd636a0ea044d1eaf020c179637d8fa "KEGG.ENVIRON" . +_:N3b3e8788c5ee4e4eafa9d6fef7b80caf . + "Health Data Research Innovation Gateway" . +_:Nf3141642ca524bc8b9c2300dc8410a75 . + "Unimod protein modification database for mass spectrometry" . + _:N4a964e50e172432499244a2a656473a4 . +_:Ncb43ae4b33f142fc95d84834c04c297e . +_:N7db542e649bf453bbf3c46f2abdab402 . +_:Nbf70cad2cb9542cda5dfdb5d7dd2f819 . +_:Ndd1a62f6d81042d18f27807fdd459eeb . + . +_:N67e000bbb58e41d199c0366eefc069d4 "UNIMOD" . + "^\\d{7}$" . +_:N85662729124e495485606b9daae71d8e . +_:N4049d50a136c4f3198f6f2f5eef93b3a . + "None" . +_:N321a12833aa34cd3b90bb40f99dc561b . + "^\\w+$" . +_:N5f04ec5371984fc2b0eaa5c19d2a4108 . + "helpdesk@cropontology-curationtool.org" . + _:Nb9f9862e4d19401b88b992576b79ee08 . + "https://identifiers.org/ido:$1" . + "false"^^ . +_:N0d291347d56041d1b029237a8f3ed22f . +_:Na12e30c9b66b4efeaae27eab15426548 . +_:N60874712f4d943c68d9c94db44f9496a . + _:Nf5270839eb284d4a917f74f639412949 . +_:N9bda280859de40a1be746b7ee89fdf42 . +_:Ne73a56f469ad4e368997179def7cfbd8 "INSDC.GCA" . + "contact@fairsharing.org" . + "None" . + "FAIRsharing" . + "International Standard Name Identifier" . +_:Nacc51a743ca24b8087431a64adf2af58 "stato" . +_:Nd1e222dbee0d490e8d0b435c159bcf9f . +_:N9cd84d74eeb34485a1d04e55763044be . +_:N34383e16f7c947e9bed1d65f62bad5f8 . + _:Nf0a033623e904527967fa7dfe1fcb61b . + _:Nbc89a397dd4349ce8b52d1537e9d42e4 . +_:Na47ca26d16064fa0b17050d68f86ff91 . +_:N98dc1f55a303402c8e42b081b6522fb8 "iceberg.family" . + _:N697593c66ca449168b5dc2171fe6d531 . + "RF00230" . + "0001655" . + "Plant Transcription Factor Database" . + "false"^^ . +_:N351b099f70604be187ac8f1609668f2f . + "^\\d{6}$" . + . +_:N457063761f1c49e7b2aab02b2c1d7493 . + _:N46dcdbddcb1942f0b79061945fd06503 . + _:N52aa21f0fc3642a2abb7102e5a15bc62 . + "An ontology to represent genomics cohort attributes." . + "CALIPHO Group Ontology of Human Anatomy" . + "false"^^ . + "None" . + "811" . +_:N45c330cc1d1248c0aa1185e22abc8b14 "oryzabase.reference" . + "RxNorm" . + . + "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs." . +_:Na4b3a793e94b42968ca76d3f8e04e0b8 "OVAE" . +_:N87eb0b5036c747289a8e5013ed70deae . + _:N2d86bee4ce134d5bbff8f57251304e66 . +_:N35dfb685c48d458592a218d181b0cca1 . + _:N53cd495bb3894b1cb95c5e424ece5545 . + "chebi" . +_:N1d33f3c858f1409b9c752b81932992ef . +_:N5d6c16ea970344718a391d7540ba7317 . + "https://identifiers.org/modeldb:$1" . + "cjmungall@lbl.gov" . + "^A\\d+$" . +_:N6b943f2c7ee942d3ad50bc555fa485a9 "AGRICOLA" . +_:N8100f09f4a4b480eba05701cb43859d6 . + _:Nf48675db795d424384ba79101ba396dc . + "http://purl.obolibrary.org/obo/mondo.obo" . + "https://www.uniprot.org/uniparc/" . + . + _:N3ebf07ca2b0241c1ba481955a321d1cb . +_:N0de9fa519dfa44a0a0d5b981dffc56cc "HINV.LOCUS" . +_:N42d9ca43b05846e7911a66cb21d20a84 . + "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines" . + "^\\d{7}$" . + _:N27a273ff07a043ceb16bd6689b62959d . + _:N5764acd03d954329b54ee5f1b40e9807 . + "false"^^ . + . +_:Nec5d35256b0744948e66a9964c550fe3 "UPA" . +_:N93db6d1ee4a147b09d556cd89f5e29d2 . + "^\\d+$" . + "Maize gross anatomy" . + _:Nd76dc6d8be22474a87807daa695b2ca3 . + "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN)." . +_:N99f02343684149afb417e452de205f21 . +_:Nb89cec5f53ea47dba47e2b1cc5e723fd "ExO" . + "false"^^ . + "false"^^ . + "243002_at" . + "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors" . +_:N643babdf9eb04f1fb06ae356bf1a9dad . +_:Nbd80b112bffb48d5b2d687dc5db2fe95 "Xenbase" . +_:Nae717fa3f839400db7a655c60380ca3c "hamap" . +_:N202ad33ee36d4e1ca0d284cb481bd0da "iceberg.element" . +_:N63fee6d2ddc3449f88bea29553a96cce . + _:Nf5eef5c7957e412f98300ce9c34320d6 . + "false"^^ . + "None" . + . + "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data." . + . + "https://identifiers.org/planttfdb:$1" . + _:Nbc144c07f23745d8b84755abb8e34dcd . + . + "Golm Metabolome Database" . +_:N56b5069379d147e2be398eb40b3ee0e4 . + "Livestock Breed Ontology" . + "^((ENS[FPTG]\\\\d{11}(\\\\.\\\\d+)?)|(FB\\\\w{2}\\\\d{7})|(Y[A-Z]{2}\\\\d{3}[a-zA-Z](\\\\-[A-Z])?)|([A-Z_a-z0-9]+(\\\\.)?(t)?(\\\\d+)?([a-z])?))$" . + . + . +_:Nedb0b07e3c4c44e4bc0aec4352f3355a "HUGO" . +_:N02d95146905e47148382c08b8b519a65 . +_:N446050346538422aa24e6087deb42a9d "noncodev3" . + "P23298" . +_:Necde56132d744b3cb10aaa44740288a1 "sheepqtldb" . + "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques." . +_:Nd279613637d440449108ff1f5362ed38 . + "https://identifiers.org/knapsack:$1" . + _:N2ee972084bd241859f5af66405574477 . +_:N25ea32885068413c812379f08e8ca7b6 "ubio.namebank" . + "https://www.ebi.ac.uk/ols/ontologies/enm/terms?iri=http://purl.obolibrary.org/obo/ENM_$1" . +_:N3385bafddf2a45f6a1a9cae4e5f7d022 "EUPATH" . + _:Nd63e1ad9eb3441d4a47db97cf647022f . +_:Nbc89a397dd4349ce8b52d1537e9d42e4 . + . + _:N55108c393e2640b0b162c2d00f54faf7 . + _:Ncbd165bcf0df42b5b764116ce5448d0c . + "http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology" . +_:N155a863599c34521a4450f6660013f70 . + . + "http://www.cazy.org/" . + "STOREDB:STUDY1040" . + "jrsmith@mcw.edu" . + "false"^^ . +_:Naa10a171a2014a8b90a6efa2f30f2938 . + "Vertebrate Homologous Organ Group Ontology" . +_:N6f145783f88441ebaddd4758e9377e18 . +_:N8babf19707bd44ff86ce333c385ce2ed . + "false"^^ . + "yongqunh@med.umich.edu" . +_:Neaa68e2b80d94e38bf60f23ad400362d . + _:N8acd5f30c38b40e284415df8c8b9fdec . +_:Nc687a70d332e45bd8986a93f1d8208f0 . +_:Nf03ad73e72f14eb6a9ab4159846fda85 . + _:N36cda1b7b1784235a72ab25a1d1133bd . +_:N16f9f38ef51b47b7bf680db307532bab "fairsharing" . + _:Nf8a4e935a6fd4c09b498930d44642abf . + "None" . + "Chickpea ontology" . +_:N70133211da1346f5970ab59dde1fd5b3 "hpm.peptide" . +_:N74262afb39af447b9110268f32216abd . + "dsmz_mutz-id:ACC 291" . +_:N4db803738d0e4581a73829b37558ce0a . +_:N7fec856117fb4294b0017f1cb89bac32 "MFOMD" . + "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families." . +_:N57b6b7e4c1084d308230bceb2d9bad77 . + "^PTN\\d{9}$" . +_:Nc141bd9e57c44d3c9cbfbf8541a77092 . +_:N51d7311e9d3149d29c390426485d0abe . +_:Nb229e543db43436c811d74c060d70d0c . +_:N4baa2608862c4b79a6ef4369fd011884 . +_:N116f10c0e8d042fba0b907d09f4cde7b . +_:N8055a26056cd4555861eac63fe027ada "HP" . + "T[A-Z]\\d{7}" . +_:N2feac3e5a038471fac5d25e3cb0aebe6 . + "PeptideAtlas Dataset" . +_:Na6d240cd70984c5385127903a354ff4f . + "https://identifiers.org/ctd.gene:$1" . + "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes." . + _:Nb6354d2bf5914b949d537941e6290ba8 . + "false"^^ . +_:N0f077154ab6545a5bda6324d65bd3928 . +_:N5aa478ac516f49c1aa82c9a623aa7fa7 . + _:N2b5aefc47a56479f81c4c136d20b089f . + "false"^^ . + "false"^^ . + "Ontology of Adverse Events" . +_:Naa68be54df964ea19f1b321542117814 . + _:N7a104434d8594448bc6a6f8a33962a47 . +_:Ncb9917b58df64b37b8404efcd69abb80 . +_:N906a9573a32a41928a69567d7bf94f2a . +_:Nd54461361c494cf082e826139e23b742 . + "ClinicalTrials.gov" . + "http://www.semantic-systems-biology.org/apo" . + _:Nee0aed4acaa34bff835617b18cbd9805 . + _:N2b23a8ecbed54a35b3e9bb60fadf0819 . + _:Ndd8b54a8f3e74b969d0185b8bcce0939 . +_:Ne295782a27d542cc9f96fa0f7c4ab7e9 . + _:Nf627ce1c76f04551aaee7d159344902a . +_:N5ef18bff72764946b2049af377136444 "EV" . + _:Nc2588b3f24994de783b1538e86102fee . + _:Na5de20799b3146e69c7f382fff739d13 . + "Allergome" . +_:N313b29bdb32b4b9bbeaeec66cb90157a "WIKIDATA" . +_:Nc74bb1a1900a477492d0713423e882f7 "glida.gpcr" . + "^rs[0-9]+$" . + "false"^^ . +_:Ndecf0c21ecdf428c8fc131d01cee9897 . +_:N994b14bff6c74c34993af78f7329bf1c "PALEODB" . + "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits." . +_:Nbb1e92a438e549d2850dee2b56fa82d6 . +_:N53483c13f14d404db4db9cd1f4f22072 . + "Vertebrate Gene Nomenclature Committee" . +_:Nd7e2c1828ceb4748af084ef363732e1b "peptideatlas" . +_:Nb3aac734702140c0b8119b14c9118910 . + _:Ndd88c16b045b408491f60144bc56e36c . + "Zebrafish Information Network" . + "https://www.ebi.ac.uk/ols/ontologies/zp/terms?iri=http://purl.obolibrary.org/obo/ZP_$1" . +_:N861fdc6bafd7478e8ecc9bc9f1bc4a8a . +_:Nb2d64ed027614182bc23006ee5c74d21 "jaxmice" . + "casent0106247" . +_:N084936afc5444ebe90c293157e1af78f . +_:N2299cd89e2994b0fa12fa676b827e02e "ecoliwiki" . + _:Nf06937b650cc4b9c8c8b476b4f021d0a . + "None" . + "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." . + "53d583d8-40c6-40e1-9296-23f821cd77a5" . +_:Ne04a898ad9884128b8b1d4be78b17136 "NCIT" . +_:N79d06e6ce47f49a097bfef701ad40203 . + _:Nf43178f152ec46eb85b442d91030d08d . + "suzia@stanford.edu" . + _:N8a966cbd5e6049ef8d827f211f8270a4 . + "^L\\d+$" . +_:N17b7b5f8bd8e48fd8f1121a44348d89e . +_:N0e56f2fe1ce446959dbe3544f2ad7443 "GLIDA.LIGAND" . + "false"^^ . + . +_:N7b7b52b32ddc4036b3b8d0d6e04cfc0e . + "Microbial Conditions Ontology" . +_:N3de32ce7be1f4ad9ba5b693c3ffbc19f "P661" . +_:N119c676e75d442b0a2985e0291a80f9d . + "false"^^ . +_:N2b48368a1af743609546e1f980fa3cb6 . + "false"^^ . +_:N061a0e53917e4bc6be3524e00b8a7bc0 "WIKIPEDIA.EN" . +_:N7c53635044124c04ac1d3482c1b9584d "nemo" . +_:Na6bbcd7f96e54d48846f8d96eb075b93 . +_:Nd09f04b4adc64cf880e693d03603511b "HP" . + . + _:Nc0f552779baf4b719bd84b25e682ab38 . +_:N4edc50277cd94e37b82f32d79958c6cf "ncim" . + . +_:Nf3b9c457bfdf41e49c7b404dc10a76bf . + "https://identifiers.org/ensembl:$1" . +_:N03e569e011584982a5d01e2b497073e0 . +_:Nf494234c875340f787e0e41ebcc829a7 . + "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database." . + _:N5fadf7ddf5da4432bbbd3a7e70bbee88 . + "^\\d+$" . + "Semanticscience Integrated Ontology" . + "PA131" . +_:N994b14bff6c74c34993af78f7329bf1c . +_:N6feb98f14aab4a61b6176740b5e322c6 "ALLERGOME" . +_:Nf7126788d8b94331b0b36353f277a4aa . +_:N42305f466f704ebeb1625845e434363a . + . + "OBO Foundry" . +_:N226cb7dce9b6413298eb11eb3021606c . +_:N7d7fa6c269a944dcaf2ff1255f01108b . +_:N85401b5a825e4d9a994b15b50540cfaf "MYCO.SMEG" . + "26753" . + _:Ne2d4f82a471d4394a3cc3f55600d1d63 . + "BioSystems" . + "ChemIDplus" . +_:Nf952081e14bc4670a9e6d69f2fa5150d . +_:Nf76381c6d0374fe097a56708ae07a986 . +_:N91c2a708f3904ce69768159d59816a8a . +_:Na7b4be97d7024cc79f78ac88dfbe741f . +_:N90d257235fc64a51896afe120435496c . + "false"^^ . + "https://rfam.org" . +_:Nfcc7f2094e974d4683567c1d2c3c3da9 "SBO" . +_:N36d875333f7e41428c638cac00f4da72 "tads" . + "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier." . +_:Nf745a67060d64ceca480829e59933188 . + _:Neeca62bb2fb047b1a550296b5b4e9f79 . + "Bgee family" . +_:N722090580b904eeebc830ea637bb6bae . + "https://www.ebi.ac.uk/ols/ontologies/msio/terms?iri=http://purl.obolibrary.org/obo/MSIO_$1" . + "DRSC05221" . + _:Nebdaa3e9a78f43faa6879f06f9b66aa6 . + . +_:N0577be01af344496ac33bfd4f91da99b . +_:N4d2937a770d74a058e4c5f83f79004b4 . + _:N41113060b02f46d0902a2dc817c014f8 . + _:N19405b3ba1f14c14933453581107256a . +_:Ne29254c63a404a84b5b1ff429fc6999c . +_:N0202c6819a224e6992d168869a8bd9f9 "pmc" . +_:Neeb938500ed2466ea60aef8e20805781 . + "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest." . + "PAp00000009" . + "ENSGT00550000074763" . +_:N1f9ffb9ac6f14ee98795dc00e4945b32 . +_:Nce93b8d621e64a7c9f48a21e9ddeb792 . +_:N76c00db8ef44470c8db7626f50ac7469 "fma" . +_:Ne642bd06a6b248c993edd23c0c43cf86 . + "https://identifiers.org/cst.ab:$1" . + "https://www.ebi.ac.uk/ols/ontologies/hao/terms?iri=http://purl.obolibrary.org/obo/HAO_$1" . + "https://identifiers.org/gold.genome:$1" . + "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view." . +_:Nf8a02cf1098e42c2a999b49b5e1cb151 . + "https://www.wikidata.org/wiki/Property:$1" . + "Toxic Process Ontology" . + . +_:Neca7cb8c0122483d978a9d352217c03c . + "BioLink Model" . +_:N3815c7cb5ce945858b0d9a2661f2f5dd . + "false"^^ . + _:N2aaf26fc444543c2bce896245eec3de7 . +_:Nc53ff96b4cf947bca49b8e83914d9bdc . +_:N8a7ed0f0313e46e69318ba6e2fb4d460 . + "^TB[1,2]?:[A-Z][a-z]?\\d+$" . +_:N8ea3b8969db84d00b95c4188dbde1dc9 . + _:Ne11d4ccd13984d038985d6546688aa47 . + "pfey@northwestern.edu" . +_:N0c92afc350924ea1b2f2434d1ab40971 . +_:N8265be4e39864793b3a8073551ad458e . +_:Na07a0e1f9a514992a9d3a9d551f50a6f . + "Flora Phenotype Ontology" . + "https://identifiers.org/metanetx.reaction:$1" . + "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1" . +_:Nc6276c11ac514679b43e4c5355e3e48d . + "false"^^ . +_:N3ebf07ca2b0241c1ba481955a321d1cb . + "false"^^ . + "None" . +_:Na62bc2340fcf45c8acc79a7d35dbf125 . +_:Ncf0268af00524ec183c837eb5ce40638 . + "None" . +_:N7932e26556314c34a1abdd233232306e . + "Birnlex_721" . +_:Naee7dbd63c054373ad702d392278c915 . +_:N6271912426194d859a306b984ea6b363 . +_:N1bebf4bdc80e431a90e6bb5682641a62 . + "None" . + "false"^^ . + _:Nd3eba3ebb05e4a818cdd04ce8a31cbe1 . +_:Nd69cf98f94c541c7aacd97bde43110af "isni" . + _:Nc47b286a162c47069cac54f85f084c62 . + "Metabolomics Workbench Project" . +_:Ne92b5a55ea4948ae8ed5bd896b7994e5 . + _:N5c5f8928bd43420dbdec197584fcac95 . + "0376" . + "^\\d+$" . + "https://www.ebi.ac.uk/ols/ontologies/co_325/terms?iri=http://purl.obolibrary.org/obo/CO_325_$1" . +_:N806bd5b7f58542eeb8da5dfa64c643fe "MGI" . + "false"^^ . +_:N5edd1bbc7c214012a0b9604db570e231 "omia" . + "eVOC (Expressed Sequence Annotation for Humans)" . + "http://smart.embl-heidelberg.de/" . + "false"^^ . +_:Na6af9bea5d1f4518b572a5055347769b . +_:Nf97621cadd184864b8bb38b1379885ab . + "true"^^ . +_:N19fb37367c634f30bb8c15ed0a8647f8 "BSPO" . +_:Nae4585bf5d8640a88dfd63c590ba70ea . +_:Nc59ee83b922f43b4a0f1f355f733086f . + _:Nad42637882094a00b0fb382edfa60afb . +_:N66178f6697bc4a1bbfd8712ff0af0688 "gmd.ref" . +_:N32daa80066094e5ca987b2dabf837278 . + "http://plasmodb.org/" . + _:N0b681a875856491ab7747eb6afaf6cbc . + . +_:Neeca62bb2fb047b1a550296b5b4e9f79 "MMO" . +_:N3a0531692bce495ba8a872fc12ccf954 "VT" . +_:N403c6032e76441f7ad5caeecbd521ab7 "bigg.compartment" . +_:N516e407347ae4749ab2231b04742eb04 . + "REPRODUCE-ME Ontology" . + "^Y[A-Z]{2}\\d+[CW]$" . + "037727" . +_:N6c61209c38364e2fb20ec3ad7ba9a8ba . + "A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI." . + _:N77962d865c434b5f93bd4e7f1d48ecb9 . + _:Naab5f9055f654451aa6eac93d0be84df . +_:Nc038c5433d954efc823f3fe368ad70c4 . + "None" . + _:N7d979815dbf5468b91dbc5706ea92128 . +_:Na7d0740be17d43669e11f88be73e54f9 "tol" . +_:N7ddfa9fe4acd45a5898ff12424483c47 . +_:N592777f3f0ab4ae0918e5d9cedfc8b80 "ISBN" . +_:N6bc4d6b3a8904edd88460f7c01926fe0 . + _:N3e831678ad264fa69ea324f3254f6f01 . + "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion." . + "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus." . + "Activity Streams" . + "https://www.ebi.ac.uk/ols/ontologies/co_360/terms?iri=http://purl.obolibrary.org/obo/CO_360_$1" . + _:N37b65e688c914774b047e5901ec4804c . +_:Nca4770a331934a9d8efc1e6b24f51711 . +_:Nb59e10b8f4b241de88aead0e16bd50e5 . + "false"^^ . +_:Nd930711a60094fd9a11fbea0755928c6 "sbo" . + "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function." . +_:N4e0d3601d21540ebbc2e9bde6a191a34 . +_:Nee101c4ae5544dd4955e9a1fde93483b . +_:N86afd1948102482ca6503a68d76e8ad2 . + "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier." . + "http://www.w3.org/ns/dcat#$1" . + . + "http://www.gramene.org/db/ontology/search?id=GRO:$1" . +_:Nc4024776fb7648dcbcec67770a01c4e2 . +_:N19405b3ba1f14c14933453581107256a . +_:Nc9f8b6f4f3e642f99b6bbf7ae97f4eb7 "FOVT" . + "^[A-Za-z0-9]+$" . +_:N5ef92a05e8ab4dbc8fd57ebf7a108395 . +_:N55c799007dce446eb8e04b5d4b8ebd79 "mmrrc" . +_:Nceeaeaf20be7423baaebdcf76d73153c . + "^\\w+_COVID19_[-\\w]+$" . + "None" . +_:Nee0aed4acaa34bff835617b18cbd9805 . + . + _:N88b5761891ec45b68acfea329c86db6b . + "None" . + . + "MNXM1723" . + "false"^^ . +_:N629ed54588c446d3bb55fc8ee9ea3910 . +_:Ncf0be15fea3145ebba3e27b7b864b15a . +_:Ne12ff16ff54846ffb570aa672ea54c29 . + _:Na3e73f719eeb4cec80fcc44f553a7f6c . +_:Nd651287881a548e5ad0bb1f3a6901816 . +_:N84684d603c194259a311d8cbe0666f57 . +_:Na6932967b81f42a0ac2abb314ebcea79 . + "http://www.informatics.jax.org/searches/MP_form.shtml" . + _:N44ef22124839436e93e45e447bdc7507 . + "None" . + "https://identifiers.org/tair.locus:$1" . +_:N8983751d697942d98753b640fbef542b "arachnoserver" . + "0001157" . +_:N804635d738084f439a1fb3796c0963d5 "pseudomonas" . + "AspGD Protein" . +_:N830a73f99e3e43548723e4467a64ec8a . + "None" . + "false"^^ . + "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome." . + "TF101014" . +_:N40eb79a7e1cc4001adb6287243de59a0 . +_:N423adc2a6d4041fa9b39304f87e99e8e . + "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities." . + . + "false"^^ . + "false"^^ . +_:N537a143ec5e343bd8b7e1329336d19e0 . + . + "CHEMBL465070" . + "arXiv" . +_:Na7c02807fc9a4181a76dc74c1c75f9ea . +_:Nb6baaf1a91144a9a8f33e1d79fc939bc . + _:N8a7ed0f0313e46e69318ba6e2fb4d460 . +_:Ne24719bbb59147159296dc9adefd92e7 . +_:N3ec9d1a679fb4a678e53ece4193419c6 . +_:N14b145c4d3ad49c4aa91667ceb7e4367 "ogms" . +_:N0c7528299ecb4d3e85531f2ff754b34b "oryzabase.mutant" . + . + "https://identifiers.org/zfin:$1" . +_:N15ac447319ba47d79b2d318694ae3b39 . + "false"^^ . +_:N3f5bb241e1e942b08ad828d950e27fac . +_:Ndbc973e032a84cabaac640a6a04dddd2 "supfam" . +_:N66ffbd2eb58b4091b64018f40b99b3d7 . + "None" . +_:Nf5bf8136ffe7461d95e6a28c86ad0ee5 "envo" . +_:N60bdb6f62c914c2688809b8c0ed4d0c0 "OGG" . +_:Nb88b2c5086d948c8b6f665cca4912329 . + _:N1176479649ed47cfb8a325f45ad0bd6f . + "ViralZone" . +_:N9f9e5e361adc4e17accb95bbb47e7196 . + _:N7e4067c94be9475d81fce727a7d67f84 . +_:Nbbbb21222628430dadb9d4f764642665 "cabri" . + _:Ncf0f0826cd464cf38243791caf79f016 . + "None" . +_:N4ebbd675e76f42b2a5e85d080c5098e7 "drugbankv4.target" . +_:Nd86c77ebeddf450d80d7e3afe63512a1 "oma.grp" . + _:Ncc18caaa7ffa49969433775f1fab6270 . +_:N9aabb1640155447ab460a29f51c623bb . +_:Naddb08f01e7b4a1daed40db479bd9c94 . +_:N4dce410c17c44a389b606ae745fc7f9e "MIAPA" . + "0000-0002-5355-2576" . +_:N4e84010357514ad0ad182a41eb75e04e . +_:N24948dd6e2a2428782e4ddd4587b4136 "pato" . +_:Nc0710d8f93504fd1a779cf43b5799797 . + "false"^^ . +_:N367f476fb54d4eefbd41285bab9e9b7e . +_:N98800fd6a425485094b1fc755d02794d . +_:N39f1cd0adaa9465b9724cf11629ff8cf . + "Life cycle stages for Human" . +_:Na86f9a9bef4c4c0d9ecbb02bbb21bfa8 . +_:N0454b37affda4e038c8d06c8c1494323 . + "http://www.ebi.ac.uk/imgt/hla" . +_:N729e3df9cee84b5289c1caf94c7b90af . +_:N02a62e70e86540aa8ae20b21a10a5ecd . + . + "http://www.candidagenome.org/" . + "Coli Genetic Stock Center" . +_:N13423f5ab2ac4318bba91218e3efafd3 "phi" . + "Protein Ensemble Database ensemble" . + "RNA ontology" . +_:N9bd509708aa64f7eb2394f329d45db50 . +_:Na849e2d5eb284c13a154741aae47d252 "3dmet" . +_:Nffc1e04a230c4648a36ef0d3a80e56bd . + . +_:N441c723af283460d9c7867b203959c9c . + _:N13a737919a6241aba998e674d3c65f03 . +_:Nbab5d5d813ec4160a367f91a0e549bd3 . + "http://ccdb.ucsd.edu/CCDBWebSite/sao.html" . +_:N51540ec53ad5463ba6662f8e04111906 . +_:Na128b929425b47139fccf49a581d104c . + _:Nbebf1b4207d0478b9cbcf4ef27879570 . + "MatrixDB" . + . +_:Nef04b86438174a12b6dff350264aace3 . +_:N321a12833aa34cd3b90bb40f99dc561b . +_:N5f04ec5371984fc2b0eaa5c19d2a4108 . +_:N6bf09f73e34c47e08468794a2f9b1ee4 . +_:Nbb28e523aa2f44e9bfd9f9d3e772d88d "aop.stressor" . + _:N100e507cf33945c38379b493a6f42103 . +_:N151d67a34f9341d59cf4089fbf621a1c . + "^\\d+$" . + "SABIO-RK EC Record" . + _:N799e39d2e36247bc8fc90090dd01adde . + _:N665f7872300c48058c17b4f561f1d23e . + "http://www.cropontology.org/ontology/CO_336/Soybean" . + _:N3afdacbcad414f0ba516d1957b9bda68 . + _:N582d53175ad84e0590996817c1c610ad . + _:N5339f4621b7647b19825fd1287161cff . +_:N13a0ac307c294ff9950cbd9917f7580f "rgd" . + . +_:N3991ca075dcf451f8b3c9900172b3092 . +_:N8fb3a35a342945c28349902b62adcf4d . + _:N981d5bc0dae74f9d9dd88787dd763fad . + "2244" . + "false"^^ . +_:Nb7626a5c5f9e4518bfc600534cafcfd1 . + "AB_262044" . + "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors." . +_:Nefaedaf016264018aee2ccfe447ad0c6 "cco" . + "Mosquito gross anatomy ontology" . + . +_:Nace1a7e21ee043f29ae929dacd46f4e8 . + "63" . +_:Nacc51a743ca24b8087431a64adf2af58 . +_:N717ca6d2814e4ef1929a38e9d5017c8b . + . + "false"^^ . + _:N1f2125934d7047eeb749daff7b026706 . +_:N8851d4dbf2fb49e5bf0de00ab3119041 "MODELDB" . +_:N53f26baa9bca49569e20d07fa4401455 "seed.reaction" . +_:Ncc7ed7bcdb184cb0a3362cebf2720121 . + _:N008218aad4e14a4998886befe9aaffb7 . +_:N93de351c5d0a433e9a3e4b963ac9f8db "mimodb" . +_:N9b125052071540008908f2259114dfb8 . +_:Ndd4113956dc84f54a92f623086151deb . + "None" . +_:Nf8a4e935a6fd4c09b498930d44642abf . +_:N49d788d083e74a20a4d40dd53e7bee94 . +_:N96965fa798de4e188d1ef53ab5c3b85e . +_:N2d60432c616b4edc9fd039c65b8ae5ef "P7963" . + _:Nc6f01b6494294af0b8aeb9e61787bab6 . + _:Nf9e69f78d68b4a21b19942ff83588597 . + _:N36b41a59c19b4e5c946fec9aca407e72 . + _:N4ce4354ddb8145bea6948a75e9310721 . +_:N8a966cbd5e6049ef8d827f211f8270a4 . + . +_:N3d954942b7bc450cacba12d1878179f5 . + _:Nffc1e04a230c4648a36ef0d3a80e56bd . + "Description of Plant Viruses" . +_:N32cf077ceb9f4247b8ab2ae0841409db . + "false"^^ . + "^[0-9]+$" . +_:Na041801c9c7a4b43b87c187f51050469 . +_:N8f52e27e4cd7486c93b2d6b52c3ce47c . +_:N6598f9494add4988b024ba83da504b2a . + _:N63cc32604acd4d01b2845db259e7b50a . +_:Na2abe485b2ca4444b51e680ef2f89df9 . + "3" . + "https://www.ebi.ac.uk/ols/ontologies/duo/terms?iri=http://purl.obolibrary.org/obo/DUO_$1" . + "false"^^ . + . +_:N6c447668eb1d4253ae76b1d0c6b9b417 . + "CoVoc Coronavirus Vocabulary" . +_:N81ce6a32173749dcbe8191f8a243160e . + . +_:Nb875a74f6e454866a4668dc45a8d8d41 . +_:N36cda1b7b1784235a72ab25a1d1133bd "OMIM" . +_:N1dac07e93cf246ec99621eae7e6409af . + "2004-2820" . + "2200950" . +_:N1faa6b5dd0a64f45b491b2ff735e3639 . +_:Nc1413a4343954094ab6ad1e85af2c50b "FBbi" . + "The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research." . + _:N87c99676568b466bb164b5a792a2f626 . +_:Nccc01f0e36964b9eb7428856fe990b35 "ECOCYC" . + "false"^^ . +_:N92a236914b0345899772053976729536 . + _:N9a4aa9f6892548928abe0d5c94e53b58 . +_:Nb1460160128b4e8f9af9499a6a28079b . + _:Nbad88d6a0d4141638320792d356cdb1f . +_:N120b4f2ecd5b4368a813a30114548ce3 . +_:N2f26ccba4cdc4e8590d301c7c28e5b42 . +_:N067d8dfb07fd4a21bbcaa6a4c048f2e9 . +_:Nefa85aac45324876b60b85e236dbb313 . + "ERP004492" . +_:Nf7ac5d114a4147c6a660fac919844aa6 . + "^MGI:\\d+$" . +_:N4d30d62253e64efb97568204ff9aea6f . + "false"^^ . +_:N8af197dc8365447ca6e8d44a51ecde4a "FB-DV" . + _:N1ef6c9b9cf6741f0be5946d0284b9b5f . +_:N6bc6b0eb1c7f4cabb4c682aaf74ab713 . + "DDB0191090" . +_:N361e5affaf26473488134b1d254227a4 "NCBIProtein" . + "https://identifiers.org/grin.taxonomy:$1" . + "Probability Distribution Ontology" . + _:Nb517abdbc380402fa4b22c97b66e1896 . + "None" . + "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance." . +_:N5d96e6d2d63e4ec4bee65745168e5d5b . +_:N926a938d00684749813761380882caae "ASAP" . + _:N3f5bb241e1e942b08ad828d950e27fac . +_:Nf5360dbc35964ab4ba51357f7c4075f8 . + "false"^^ . +_:Nbe49d29a577049cd9bb1ed28db6a8cf7 . +_:Nd12199b9366e46b292d36bab16c76f1d . + _:Nd560a13b92ec43c3af60b7afbf6252c4 . + "https://identifiers.org/FOODON:$1" . + "TF0001053" . +_:N9b6070b1a9fe4448976b74eb6983b8d0 "PRODOM" . + "None" . + _:Nc3c4ffc882a143d29c9457ae75461ed4 . +_:Na0eb689746654836a952d90a24f46732 . + "None" . + _:N7af4052c552443e6bfa5cb0e621be7f9 . +_:N4a0700cea95442d38204c90759bea97a "cgd" . + . + "https://github.com/The-Sequence-Ontology/SO-Ontologies" . + "ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl" . +_:Nc2c1652fec084e29be6e744e9da81f05 "goa" . +_:Nf82124b2610e41de8f82ad4a602ffdfc "pocketome" . + . + "https://identifiers.org/niaest:$1" . + "true"^^ . +_:N56b5069379d147e2be398eb40b3ee0e4 "PX" . + _:Nce0049f736bc4eb4940186f90c3bc881 . +_:Nf48675db795d424384ba79101ba396dc "MIRTARBASE" . + "^[A-Za-z]+$" . +_:N87d8cd5b2b16465f92a94236db1ded96 . + "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$" . + _:N2f65b03ff7954df491fa609271cfc2bf . + "PS00001" . +_:N337ed5c2151d44a4a56c1448b6071a7b "gmd" . +_:Ned01603c34294e689fceb23847d85619 "GENO" . +_:N9cd1d1d0b0e445f8897b27384270dff3 "tol" . +_:N1c8f695123cf439ba43f3f3084d00213 . +_:N45c2479ecd96428aa2705d908a99f380 "CHIRO" . + . + "http://www.fao.org/gsfaonline" . + "LDS-1110" . + _:Ncdb0dc213bec430b9c64fd9aa2189794 . +_:N310a14bb296740e1a0a48f46faf0a2d5 "myco.marinum" . + "http://co.mbine.org/standards/kisao" . + "false"^^ . + "MetaNetX chemical" . +_:N0b700b0c63084c0ab59ffa6edfd8a7f4 "homd.taxon" . +_:Ne0e53293a5a8482486ca0640ad1589e9 "efo" . + "false"^^ . +_:N4b9c015ef7c8401e8448a715b201ce6b . + . + _:Nae49ec024c0d411782983f04a9bc39f6 . + "Ensembl Glossary" . + _:Nd4efcb86e90e42768ba341a72dad3289 . +_:Nc3ab1107730640d487395d28ae0657b8 "seed.compound" . +_:N0f077154ab6545a5bda6324d65bd3928 . +_:Ncdbeae57f26a4b4fb06ced401a30e440 . +_:N39feb38f4a6c492eab4d9a3de038671d . + "false"^^ . + . +_:N3cb20b32163c46a2910f7c059ca9fa7e . + "https://www.ncbi.nlm.nih.gov/nucleotide/$1" . +_:Ncbecc85381294f758f19a2d6d9303324 "CEPH" . + _:N49268ab2df614ebfa4fa473feeef3f0b . +_:N060850a5f0a74d10a9fc93bbc13267c6 . +_:Ndefa70fa7426401d829a3dc9eff09e04 "MedGen" . + _:N7915c3b0cc3c4c79a2d079a8b98d0ffc . +_:N95bfcbaa98da4a81aac735adbb676fa0 . +_:Nfd99f0fe8eba4fd3b898d95bf4e80bf2 "MIAPA" . +_:N8ed6bffed4b547a2924abd655fe91ce9 "XCO" . + "131392" . + "false"^^ . +_:Nca4770a331934a9d8efc1e6b24f51711 "MA" . +_:Nc32c996d1afc4b89a6c50d9d4df9e391 . +_:N8a171690f82e4ac9ba3835d975fe6783 "ARO" . +_:N19477b0983a147109695bf3211e0b195 . +_:Nf952081e14bc4670a9e6d69f2fa5150d "wikidata" . +_:N66df0b60dcc249c4b430a47db0d2948e . +_:N91a8fa0ea4d741d89ec1d20d74e472b2 "ird.segment" . + . + "None" . +_:N8e1f709e0ba4473b946a8834df4ee385 . + _:N86ffa9bc2a534fc3b924881b63981fc9 . +_:N2ea63690ee3c4421bbd531c45e80b777 . + "None" . + _:Nded113b7b9344ff5812d3aca79d5c320 . + _:N8a7ad7b64a4b44ae933687b24f724c4f . + _:Ne04a898ad9884128b8b1d4be78b17136 . + "33607" . + _:Ndecf0c21ecdf428c8fc131d01cee9897 . + "true"^^ . + "https://www.ebi.ac.uk/ols/ontologies/miro/terms?iri=http://purl.obolibrary.org/obo/MIRO_$1" . + "https://panoramaweb.org/$1.url" . +_:N85c43a1bb5664bfab6a7640a3adea608 "biominder" . + _:N7bbc79ef2d2b46109b5c6c8823c6da15 . +_:Nb3aac734702140c0b8119b14c9118910 . +_:Nc7583a5c91384d9c8d27277a00187a73 "dev.ga4ghdos" . + "^\\d+$" . + "false"^^ . + . + "https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http://purl.obolibrary.org/obo/CHEMINF_$1" . + "https://identifiers.org/toxoplasma:$1" . + . + "false"^^ . +_:N79a95de0ed34421887cb470bd249760f "VHOG" . + "E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments." . + _:Ne2ff16c0e2034430ad35a612dccd7df2 . +_:N8ec108ff1a354742a1f86e34e1e27153 . + "None" . + "https://identifiers.org/lincs.data:$1" . +_:N3798789ca4be472698f5066bf5666666 . + . + "false"^^ . +_:N9164accdaef6411cbe2467dc04dc1082 "ensembl" . +_:N5f9e2cddcf1c4dc0afc6b5ea2df42661 . + _:Na7d0740be17d43669e11f88be73e54f9 . + _:Nbf015f1fb9da4e378abad99b2403e799 . +_:Nb458d227e2304499b8e84fe01d9aa1b1 "enm" . +_:Nfc5d39f6f1d4418dbfe0e0cc03d5a0ce "genpept" . +_:N513f6a8014654db4b8eeb6cfd848c0c3 . + "None" . +_:N867c315f547149a18b8e3768d1b6b2d5 . +_:Nb83ad953ed634896a5662808d3c08c00 "PROGLYC" . + "None" . +_:Nd4fb9dad5ac749869a9e97d671935e6c . + "http://braininfo.rprc.washington.edu/" . +_:N0648155cb06c4694bd24bd8fb7ee8924 . +_:N16cb1a295c124965884bb43d6a5b2652 . +_:Nbf7d970252ac43428b1aa7bd3086eb92 . + "Rice ontology" . + "^AT[1-5]G\\d{5}(\\.\\d+)?$" . + . + "Biological Expression Language" . +_:N4efac9c002d94966ae0029abce0053c0 . +_:Nd3d5ae4fc1a6417f99c73b660e89f348 "opmi" . + "Open Researcher and Contributor ID" . + _:N925cdcb585ca4ab4a66a58352393c4bd . + "Chlamydia" . + "Open Citation Identifier" . +_:N0ded47946a544e9aa086c52113b728de "FAIRsharing.p06nme" . + "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae." . + _:N4b6cb01fa90c4430a535695b862d039d . + "false"^^ . +_:N03992d583fed410284fd121b2572b270 . + "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species." . + "0000040" . + "false"^^ . +_:Nae7e93864dad48648d14348494e3a0f7 . + "LOC_Os01g49190.1" . + "https://bioregistry.io/collection/$1" . + . +_:N658302102dbf4549b3bba90e9a3066a9 "UM-BBD_reactionID" . + "https://identifiers.org/ro:$1" . + _:Nb127271f1f94424ba01d9be08542b6df . +_:N722090580b904eeebc830ea637bb6bae . +_:N7830bf9fde194237a9d1c4f0c627fc12 . + "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)" . +_:Nec29b08342a048da88d4b210c4cf62c0 . + "https://identifiers.org/mpid:$1" . + _:N04132de35eca4c01b154eecad7e92f2c . + . +_:N28cff03e97b44a23948e18af00ada044 . +_:N979906e2029142dbab2a906081b1c9b4 "BAO" . +_:N0fd9b1dfdd8646aca531f064733f28ae "HINV.PROTEIN" . +_:Ned26489a731b4f84ade0bc5e5d9b7b20 . + _:Ne8c41bc5e23e48e2a4ecc48a55bde7f2 . +_:N9f62a552453a4867ab9c93e4cc5874c1 . +_:Nb38a145bd3a64dee827940918ab21298 "VSAO" . + "Natural Product Activity and Species Source Database" . + . + "false"^^ . +_:N21f3ccb6f4f94eeea08443ca8fbf62ea . + "None" . +_:N63faf99915f64df9a937ed7fcafcc668 "poro" . + _:Ndd4113956dc84f54a92f623086151deb . +_:N862eeecd326a42878fe01b828d743f1a "ZECO" . +_:N9f42df6e04df4b2bb40de916c01dda78 "GABI" . + "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$" . + "false"^^ . +_:Ncb97d12d28e54127a0936620d3511f7f . +_:N51ea3473b94b411d955a9f4230391544 . +_:Nca385fd5d04745028ece2fcfc64dd279 "antweb" . +_:N91e9abecde844dd4a30e92080451677d . +_:Nb9e1130524a7437496f06068c42d61d0 . + "P3DB Protein" . + "false"^^ . + "https://identifiers.org/kegg.reaction:$1" . + _:Nd4ffd9ab70c84e4f834270290d94a8aa . +_:Neffe489d8ca4421c84745a9cd2a7cf5e . + "CVCL_0440" . + "false"^^ . + "None" . + "^\\d{7}$" . + "BCRTi001-A" . + "false"^^ . +_:Ne5fb57a24d7d4d1882e841971b4d995f "BCO" . + "https://www.ebi.ac.uk/ols/ontologies/co_327/terms?iri=http://purl.obolibrary.org/obo/CO_327_$1" . + "MassBank" . +_:Nab2602af8f344e0ca8627af6dba72ad7 . +_:N34689d2bc8cb4e288ed5805497fb68e3 "CHEBI" . + "None" . +_:N8d73ac8ae58241ebb2b52bae93a78b80 . + _:N9c55effd3a384cf3a938f05e0e18f398 . +_:N52faa86f145344ef8440b6e63f6993aa . + "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB." . +_:N020a5d3deadb4e73a36e27cef2228de8 "ORCID" . + "rs17852708" . +_:Na5e74422172a43e4bfa95cbf01b4d0eb "unists" . +_:N3c9f9153d9c2483cae91a9021e9bf975 . + "fluticasone" . + . +_:Nb72c2707323e41f9b45306fa978d4e02 . + "Health Surveillance Ontology" . + "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast." . +_:N88a3123acb21443a8c0c5afb50770fe9 . + _:Ndde5d0d8789d483aba5fcb0961d3e444 . +_:N6211d2cbfb2d4a5f944626a97578df5a . +_:Nf5270839eb284d4a917f74f639412949 . +_:N5252f51867e14d799a324047507ab116 "ICD10" . + "false"^^ . + "^\\d+(\\.\\d+(\\.\\d+(\\.\\d+)?)?)?$" . +_:N592777f3f0ab4ae0918e5d9cedfc8b80 . + "https://vega.archive.ensembl.org/index.html" . + _:N236f3925dab64a23b7d47fb4df870d9f . + "http://www.ebi.ac.uk/interpro/" . + "false"^^ . +_:N1ef6c9b9cf6741f0be5946d0284b9b5f "RNAO" . +_:Nf7e75ea6fe114b61b444b873f805abb1 . + _:Nb2dfba330b314a1aa94ac104d6025d1f . + "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification." . +_:Ndd592b79c45b49c0b3f0ff7888e5c786 . +_:N3f89482dbae84bc4b2255ea879614575 . + _:N05d6c3d143ad4fe2a60d93103a713031 . + . + _:N45c2479ecd96428aa2705d908a99f380 . + "Drosophila Phenotype Ontology" . + "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc." . + _:Ned9d63a7b5db485e87ec35fb9af8511d . + _:N78d525d2c90e47ee955188b2378f4e34 . +_:N95629e14906b415a871f9ca8b066dddc . + . + _:N4f21a1c7504c41608aa0cb2b8b8c6c51 . +_:Nc2b000ad60f74e9395a167708ec91bdb . + _:N7cb6e995c48448a99ac9c91c31d01280 . + . + _:Nb151f50c72eb4811acd8eb0511a7ca7d . + "None" . + "bioregistry" . + "617102" . +_:N2e2552dad58147e6854bdcbe947f8eba . + . + "None" . +_:N3ef3f9d357cf44bfaa55a428e12f1157 "TO" . +_:N66aef776d24640c28d93ca52d10b326b . +_:N90733df28b614c6caf1a0ad861c977b3 "PCO" . + "AphidBase Transcript" . + _:N862c530bfd1e4641bf798c08685f1c83 . + . +_:Nc90e9b135bed424a8421c3e24628d8ab . + _:N06db56cb3b8946d7aedf6fd230422413 . +_:Nc038c5433d954efc823f3fe368ad70c4 . +_:N55340fb273184a1c9634d7feaa41b491 "METANETX.CHEMICAL" . +_:N6e987edf9ffd4d508330b3a050c80f70 "metlin" . +_:N7ff5e27c39a9477992e64f1edc9ff65a "BIOTOOLS" . + "None" . +_:N015713ab9c334a90809010d27ef10169 "hpath" . + "^ECMDB\\d+$" . + "dclunie@dclunie.com" . +_:N62617277de30484c942f860c2417d016 "PUBCHEM.SUBSTANCE" . + "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics" . + _:Nca5614f64e7d489fa89bbc308bd8d291 . +_:N8e7659d6ca0d4fd9ab9282f6ca966727 . +_:N95bfcbaa98da4a81aac735adbb676fa0 . + "false"^^ . +_:N4504e5cd520a46f08688bf447a0a215c . +_:Nf6dc5a9f76ee4d8186030f8bbeccfb7d . +_:N69337b4a0f984edb9b6957fb9366ec1b . +_:Nc2f0c2ce375e404b92e2068b4b28cef5 . + "Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s)." . + . +_:N949e91ceb5954ba1a1f2fb725a99911e . + "false"^^ . +_:N425f3ccf7e2c46f6abf9a54e5a480ef4 "biogrid" . + "false"^^ . +_:N4e0d3601d21540ebbc2e9bde6a191a34 . +_:N19fb37367c634f30bb8c15ed0a8647f8 . +_:Nbae3f946f2434e309dc600ffcb974186 . + "https://www.ebi.ac.uk/ols/ontologies/co_359/terms?iri=http://purl.obolibrary.org/obo/CO_359_$1" . +_:N30c31161f00244049c2d5f7bf2283865 . +_:N86afd1948102482ca6503a68d76e8ad2 . + "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales." . + _:N1faa6b5dd0a64f45b491b2ff735e3639 . +_:Nb8035047343b406d8610abc4f03a4625 . +_:N64d3332d57084758a43f48d8cd32b3a2 "OBA" . +_:N956d8e022cf9478c9b578a40a063bf81 . +_:Na32a557d0f88466da02ef0ee9f4c0ddb "kegg.genome" . +_:Ncea739ad97a44702859931fe08b93cf6 "MICRO" . +_:N0440b39504d4428a91836eebaae6bd7a . + _:N45a0727b93e14ca68d98e0daf3a3870d . + _:N42d33c75a2a142b88983e5d7af7c548f . + "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes." . +_:N5613984adcb348139db2d0f9061ba0e3 . +_:N6477a030f93d43708c3d17187cfeb44f . +_:N158d524410bd44a09c03f0b820b8aa01 . +_:N1114af658b8849c7bcf120b9138f9262 "VMHREACTION" . +_:Nd24e10410a464a41b8c051dca91133a9 "intact" . + _:N60efb3f21f524b1cb11aba0271de19ca . +_:N3ef3f9d357cf44bfaa55a428e12f1157 . + "http://eawag-bbd.ethz.ch/" . + _:Nc9285dd3bea341a4919ee9021cfcd25d . +_:N5b99e180583541b4af8657f1aed8b756 . +_:Nee0aed4acaa34bff835617b18cbd9805 . +_:Na9901f06306c44c4bcd541b81bfeeba9 . + _:N24e67c608add4f228321dc5ea10c7b6c . + "R00100" . +_:Nbf652f57d49447deb6d80a3ef4977272 "swissregulon" . +_:Nd9415648a82b4e3e82c88bb6a567a7d7 . + _:N446050346538422aa24e6087deb42a9d . +_:Nbb41dd1e7ced4e03931f835a129041d4 . + "Drug Central" . + . +_:Nc1f900adad0649d1a915c5da5f2236b8 "inchikey" . +_:Nd2b5996fed224623bd6027e0d5b34902 "taxon" . +_:N04132de35eca4c01b154eecad7e92f2c "gwascentral.phenotype" . +_:N8578c234315947d38e493eb987891e4f "kegg.orthology" . + _:N65892fc71b1349b88a4699c997008745 . +_:Nf3feb006bf1145f4b171b4eda07e6e85 "CDPD" . + "https://identifiers.org/hgmd:$1" . +_:N5033639141384a3a9bce665c29e26be3 . +_:Nd9431352917b47808b177a760f5010c3 . +_:Ne779e778063b41949b5b14179c9a65cd . +_:N70139ef06c9b4eeb9a948a9857ae5a5b . + . + "false"^^ . +_:Ncec40608eff04656bbea3a8f343351ca . +_:N2b24096c54d84093a7fe2fa856299562 "funcbase.mouse" . + "cjmungall@lbl.gov" . +_:N763803ed4fb8400aba6eb4e5c11ead9b . + "https://identifiers.org/hovergen:$1" . + "^\\D{4}\\d{6}(\\-\\D{2})?$" . +_:N830a73f99e3e43548723e4467a64ec8a . + _:N21f259c90025417d8a71792d10ee8480 . +_:Nc3f9ae8848ba48b29a645af611cda5eb . + . + "https://identifiers.org/yid:$1" . + _:N0776bdf4abaa4e0f9f0dfc2582643dde . + _:N88b207513d2b44629ef4f83563f92478 . +_:N647202dfb0164e4fb092136b1a1e144e "HUGE" . +_:Nf4559e715dc54311870651d5701fac2c "multicellds.snapshot" . +_:N40eb79a7e1cc4001adb6287243de59a0 . +_:N0d3b34adc0b542bfafaa73f9e7865b08 . + "https://bioregistry.io/$1:$2" . + _:N522c4816083a4b169781ab723e4906d8 . +_:Nd88c3b84c9224379935c31f37d823b7d . + "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank." . +_:N053e3f965e29486c887349e054d2caf9 "swisslipid" . + . +_:N0617042c5ce44fb39d8c7ab431b7e5d9 "pubmed" . + _:N8e9bdfacf85f48eea0d3a4eb80d90809 . + "false"^^ . + . + "^RRID:[a-zA-Z]+.+$" . + "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi." . + "None" . + . + "The Cell: An Image Library\u2122 is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes." . + "http://bactibase.hammamilab.org" . + "https://identifiers.org/yeastintron:$1" . + "false"^^ . +_:Nd76dc6d8be22474a87807daa695b2ca3 . + . + "FAIRsharing Subject Ontology" . +_:N66ffbd2eb58b4091b64018f40b99b3d7 . + _:Nf3141642ca524bc8b9c2300dc8410a75 . +_:Nf68fbf715ea143e39cc54c45dc393a25 . + "Vertebrate Taxonomy Ontology" . +_:N112c471e69ad4dfcab2b0174e41fe25a . + _:N559d671aa4c744ba941a45bddf4dc893 . +_:N2c4e8d870cd549af8fafb07f2260b16d . + "https://identifiers.org/ccds:$1" . + "https://identifiers.org/charprot:$1" . + "https://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_$1" . +_:N776b4781d4df427d9ea4477f4663d65c . + _:N8a1c552d2fc34483b924ae1f6e9fb79b . + "PWY3O-214" . + "http://birdgenenames.org/cgnc/" . +_:N13f5a7b5b7834639a87ed7d82091593b "CGD" . +_:N3568d52fafd3450bbdce6fe569f64d5f . + "SIDER Side Effect" . +_:Nc75b9d641ae646b2afbf36c12b5892f4 "ro" . + "^(MNXM\\d+|BIOMASS|WATER)$" . + "Human developmental anatomy, abstract version" . +_:Nd0fe07d2ee0c44d8919512a1f6bdcbb2 . +_:Ne96ce534736d42eb983e89e9b7025f91 . +_:N716548378350445b9ef8d57ee0d72173 "OPMI" . + "https://github.com/ontoice/ICEO" . +_:N98800fd6a425485094b1fc755d02794d . +_:N39f1cd0adaa9465b9724cf11629ff8cf . +_:N415e0be562474c10b0e26b9c0d842a64 "lincs.cell" . +_:Nbeb7096cd66049d39ec197d6d1c1892c . +_:N0454b37affda4e038c8d06c8c1494323 . + "http://www.cropontology.org/ontology/CO_322/Maize" . + "AS000060" . + "^SM\\d{5}$" . +_:Nefe38e24fc614cac83402fa6da9fbfd1 . + _:Nd54461361c494cf082e826139e23b742 . +_:N2aead8e3946f44219a390b88867b390b . + "None" . + "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc." . +_:Nad3c10d3c43845bd9c3c20e0c7909af7 . + . + "56305849200" . +_:Nbb1c87d6d6dd4053adc837ab25f64cc7 "virsirna" . + "false"^^ . + _:N9512305efe7d4ac1afadf57416daea35 . +_:Nc28463b3f2244e5b815e32109b5168a7 . + _:N18d1a4c7053e487dab802c4358633aa0 . +_:Nc3da6d65562e42ac9baeac0e84ea1827 "P5270" . +_:N7f48290722af4170b0e004e5cc89de32 . +_:N44b9966bcaf8432b91ef2bf052542a2d . +_:N7626eea458c442239dc7df618ca5c645 . +_:N5f60c22bfee94d1290367157e65d7d96 . +_:Na718214d4c3e4d70a253c8497f9668c2 . +_:Nc4b7ce543a604215b26f1c2adec9cf26 "clo" . + "Insertion sequence elements database" . + _:N6838ae572e364b8aac8cd9b85c68d81e . +_:Na5c6f621c5b74d9db3920b720aab4b32 "scretf" . +_:N22dca894660a4e458bd02ad1da2e2630 . +_:N5af6e26210c2493eb9d685a4d581fc25 "mondo" . + "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$" . + _:N28eb7697f1be4062b3b5adbeb58268c0 . +_:N1d2eacc818094384b0c873f04decc7bb . + "None" 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"None" . + "0000001" . +_:N1729355bb1134c17b527435d7ac2aee5 . +_:Na4d9b892b27f4ed7a5a89de7106b6063 . +_:Na032a97bf22547cdad8ea77c5ae5a02d . + "^HP:\\d{7}$" . + "None" . + _:N155a863599c34521a4450f6660013f70 . + "https://www.ebi.ac.uk/ols/ontologies/ico/terms?iri=http://purl.obolibrary.org/obo/ICO_$1" . + "1" . + "102l" . + "http://www.russelllab.org/miRNAs/" . +_:N3c0a6a09bf6f49fea5846e46cf512bd3 . +_:N40df88fda60d4457b167f7806ad1a61c . + "ACM1_HUMAN" . + "^\\d{7}$" . +_:Nca00206ad74f4779bb7a8b036f206d93 . + . + . + _:N69337b4a0f984edb9b6957fb9366ec1b . +_:Nfd99f0fe8eba4fd3b898d95bf4e80bf2 . +_:Nadd7f09834de4844b50fe7789dc2c57b "t3db" . +_:Nc75b9d641ae646b2afbf36c12b5892f4 . +_:Ne570a2a0479a4a768720980608a1095a . + . +_:N32cf077ceb9f4247b8ab2ae0841409db . +_:Nb790f514b99741ddb291d7b7aa217d50 . +_:Ncdccb0c4bd9141d2a94015ed34ac0dd0 . +_:Nad4d2ef1f7d3422c9ea8ab0c947a0d49 . + "None" . +_:N8e8fae726284458aba6815795d966913 "biostudies" . + "^oai\\:cwi\\.nl\\:\\d+$" . + "mbrochhausen@gmail.com" . + "false"^^ . +_:Nb70186fe0e4a4c7395f0c3d041810346 . +_:N8819ed19a5f748888ab5297325bdc00d "PUBCHEM.BIOASSAY" . + "false"^^ . + _:Nc59370b34e744ccea662634c9e097e37 . + "false"^^ . +_:N859cbe91c08d4f4c81c509eef996d8a3 . + _:N66ffbd2eb58b4091b64018f40b99b3d7 . +_:N98e42b19638e4318afd9e9f5e5201574 . +_:N09239cf8262c4eaf9e2386a97faadbc3 . + "DASHR expression" . + "http://viralzone.expasy.org/" . + . +_:N86c79df87da640be9b95e15c210000e2 "to" . +_:N46206fa4e6f74295bc34fe9cdb6dcb4f . +_:Ndde711597f0748f6b22cde7a6273c942 . + "safisher@upenn.edu" . + . +_:Ncf0f0826cd464cf38243791caf79f016 . + _:Nc687a70d332e45bd8986a93f1d8208f0 . +_:N6b8a4afb0b7341afa8934882cec3cebf . + _:Ne5c954e6d3424daf9976367fe60760bc . + _:N949e91ceb5954ba1a1f2fb725a99911e . + _:N35087fb7ec79477abf56a36bb14cded4 . + "UniProt Subcellular Locations" . + _:Nc989b1f549a948b5bc1bc3b1d85f57a6 . +_:N3fbd3e5cb7e24929ae23fde197128220 . + "^\\d{4}-\\d{3}[\\dX]$" . + "^\\d{7}$" . + "UniGene" . + "https://identifiers.org/gmd.gcms:$1" . + "https://www.ebi.ac.uk/ols/ontologies/fix/terms?iri=http://purl.obolibrary.org/obo/FIX_$1" . +_:N8c8d8931c9564a9ebe6a0e2b1af36342 "yeastintron" . +_:N8b373ba7ca25416f96c2e452b4980d35 "narcis" . +_:N1e09e6945d314255869faa1e59ea950e . + _:Nfe7b12fc66a5488dae523a179a0e0356 . + "https://identifiers.org/eggnog:$1" . +_:Nc2e25b9504024b1c961b5377a81007b2 . +_:Ncba8f9df0033412f84fcc18df8abab97 "omo" . + "98034" . +_:N87e64bacb936484f81f1b7ad129098fa "OHD" . +_:N67d62b0aab0b4c0a8ed0a40a50abdbbc . + "Lycalopex_vetulus" . +_:N926a938d00684749813761380882caae . + "Semantic Web Context" . +_:Na4b3a793e94b42968ca76d3f8e04e0b8 . +_:N71a35519c51348a489d81324696f210a "ZINC" . +_:N165e8a378f9349208f6eed4fbf0386ec . + "^(P)?EO\\:\\d{7}$" . + "false"^^ . + "MGnify Project" . +_:N594fe9b15db241408a1410b03221caa3 "FACEBASE" . +_:Nbbbb026372da489baadb376a52feec1f "dctypes" . + "helpdesk@cropontology-curationtool.org" . + "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$" . + _:N91b61392e0464dc48453a09c55fc3d29 . +_:N2aead8e3946f44219a390b88867b390b "MATRIXDB.ASSOCIATION" . +_:N39c0f5aa9f7a49f587c76cad457c52c5 "bacmap.map" . + "^[0-9]+\\.[0-9]+" . + "VIRsiRNA" . +_:N67c70e69948b4b04909cd08115ebd1b3 . +_:Nac7be0bbeae947dabe2b4f837ec485f9 . +_:Nc8ecf845bc064929bfbc6f8ad6c91e7b . +_:Ndf1f12341a534dc8b30f9b49d8b8875f . +_:N77afe172bc9f4518b3682b33aca0a139 . + "^\\d+$" . +_:Nec1c6d13a5f64547b65e854ba171d8cc . + "The Amphioxus Development and Anatomy Ontology" . + "https://identifiers.org/fsnp:$1" . +_:Ndaf5ba0656ac494bbb57c71dcb090221 . +_:N1fd1111641264ea08a7d88260d4a5b52 . +_:Nbf652f57d49447deb6d80a3ef4977272 . + "^M[0-9]{4,}$" . +_:N37f9900958de4c9cba10aa386ef9eaa3 . +_:Nb3d50b8db9184f2dbfabb4083d9eaaee . + "^\\d+$" . +_:N5e3034045dbe4c0f8af997c603a4ed17 . +_:N95646a2e675e49b1825abb327333dd7b . + "false"^^ . +_:N7f9fee758f5d4e23841b7cf61492dfa2 . +_:N02f0f0c0290f41df94fa06e89978fdac . + "6b1" . + "Morphological and physiological measurement records generated from clinical and model organism research and health programs." . + "Common Access to Biological Resources and Information Project" . + _:Na44e8919263947d29b4e68f2e7c8b135 . + "None" . + "None" . +_:N559d671aa4c744ba941a45bddf4dc893 . + _:N8e8fae726284458aba6815795d966913 . +_:N3cb20b32163c46a2910f7c059ca9fa7e . +_:N3be8f991ff2f40649de52d6964d9160a . + . +_:Ndc0568a6043748088c5d18be39f55f23 . +_:N35f30bd742b946bfa94f84c8502f0bd9 "complexportal" . +_:N120a35aff4544c16a603b8a8cece8a76 . + _:N8d4489bbaecf44e89b621da29818f095 . + "Ligand Expo" . + _:N42305f466f704ebeb1625845e434363a . + "Yeast Intron Database v3" . +_:N3c06a7d0a6f54e3f940146e2f1ddf077 . + _:N361e5affaf26473488134b1d254227a4 . +_:N3c9fdf1a547449adb48d4d8c4182c772 . +_:Ne5fb57a24d7d4d1882e841971b4d995f . + _:N1863e15044a54767809e9a5b0b68b266 . +_:N622778198fee4607a2970c06bc70a7a0 . + _:N650b607c0fe64b4699babf3345c87407 . + . + "https://identifiers.org/treefam:$1" . +_:N224458f5582543eab7a76728cf8998e7 . + "Digital Object Identifier" . + "None" . + _:Nd0adf289afda4e1da27aaacf41775dd6 . + "AOPWiki" . + _:N5131b01dad7345f3ae0a2019463051b6 . +_:N8b6f4999335f4680827b8c4a14ffde62 . + _:N8da54c6e2666448d852bc3cbc2df9f06 . + _:Nac52d80dc2c8469f98fcc2adcbd666f2 . + "Q9P0K8" . + _:Nd936df41703242a5ac3f75b43e12115c . + "helpdesk@cropontology-curationtool.org" . + "^\\d{7}$" . + _:Nc5f4f99e79ed47509ab2540347b4ef1a . +_:Nd7bc1fc257414dbeb5dfa03865680cb8 . + _:Ndc814b6c4409407ca1a438cdcef5ed90 . + "https://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_$1" . +_:N2a6871f92ed943978814a222c4c11db6 . +_:Na388703ca5e34bc39ad46f58e88ab2ae "taxon" . + . + . + "http://www.informatics.jax.org/expression.shtml" . + _:N30620bc76862481384d7735e16c61852 . + "aellenhicks@gmail.com" . +_:N8b1e383535154f698796c801b26e8d71 . +_:Na5b3858eb28c4f54b8e93462535b8508 . + "EMD-1001" . + _:Nc848288e34894435818273852c507d0d . + "EB0170" . +_:N0deb866b165e4d9aa67ed845f5dd4d2b . +_:Naee96f3dd90d42a982e3035c7b734e3f . + "^MIRT\\d{6}$" . + "^\\d{7}$" . +_:N0b245887e0d34af79e4f94858fd37e85 . + "https://identifiers.org/lrg:$1" . + "false"^^ . +_:Nea6cb7fa3daf409e895112dd9abc80f6 . +_:N96965fa798de4e188d1ef53ab5c3b85e "gramene.taxonomy" . + "DBG2 Introns" . +_:N2bff70e3c5894552b5ab5384c6285eb7 . +_:Na56dc6b8a2f34a63949274a8a04f8bfd "P351" . + . + "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents." . +_:N16cb1a295c124965884bb43d6a5b2652 . +_:N48efc1343f67475e8dae8557faaf861a . +_:N380156fbd7f1486fa12c9dd8bf92a69e . +_:N28c06f5a35ad4b20b244bad814fb7386 . + "^[A-Z]{6}(\\d{2})?$" . + . + _:Ndec3f37cd9044bc8b1fb44fcf54b2b7c . + "false"^^ . +_:N511a34bdceed411c945075563d11023c . + _:N0832ad41adae406cac7e57d6393b4f1f . +_:N4756f3e592034daf98118bc5fea119d6 . + "false"^^ . + _:Nd56a2fd90ec04a45827aa2a730860a67 . + _:N52fa8c08e69140bcb3dfe4ff04213e24 . +_:N5a95d797771f46638265f8141b780d04 "ecoliwiki" . + _:N158d524410bd44a09c03f0b820b8aa01 . + "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable." . + "LOC_Os01g49190" . +_:N377a7a3aaf0447c7b90ae7ded75fe77c "CTD.DISEASE" . + "None" . +_:Nf4c7a5e7d855452ba93d0c2fc4e96a2e . + "Web Annotation Ontology" . +_:Nc8f499aaabdd44d689d297aec6e00ada . +_:Na93aa711212843539d6c51089873e9aa . + "Genatlas" . +_:N9194d61945c14b6b8c969daabe1f050c "WORFDB" . +_:Nd7e7898ab84749d09f69778f5513a8dd . +_:N03f6c58ce9dc4fd1b16763e62738fd9b . + "false"^^ . + _:Nc8f499aaabdd44d689d297aec6e00ada . +_:Ncaf07e3dc65146b4aa59dc50d9a9adb8 . + _:N6ead570fb40845d2925ac14610fe88cc . + "https://github.com/jannahastings/emotion-ontology" . +_:N703970fb68b14074a2a9ec741c0ba37b "INCHI" . +_:N084936afc5444ebe90c293157e1af78f "cheminf" . + "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides." . + "http://mobidb.bio.unipd.it" . + _:N1fb38188696b4280b64a58d6165bfa41 . +_:N5026165633ee40a6b233c78a6eb00581 "P665" . +_:Ncc7ed7bcdb184cb0a3362cebf2720121 . +_:Nde2b9f60eb324f2b8328c9fd0d3b10f2 . + _:Nc2f2cf26ef2d40d0aaf8513cd0d92796 . + "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns." . + _:Nd81b77e06dc9412da8f20140504fce52 . + "1046" . +_:N270fe638aaef44fea93156c3cb6b8818 "dbd" . + "false"^^ . +_:N9fd6f3fc85e744d8a247ea326087e160 . +_:N1fd53614f0e34052adccc66f3b013f82 . + "https://www.flymine.org/come/entry?gn=$1" . + "None" . + "false"^^ . +_:Nb9e1130524a7437496f06068c42d61d0 . +_:N84f89c86a61849f6b617158c8940ddd1 . + _:N118b39ffec344e72983d760c451ff901 . +_:N3cb7b7e87a6943f2bb1aa31dfdeb8f39 "IRD.SEGMENT" . +_:N31d1258994144cc8be7654ff7a988c67 "MICRO" . + "^[a-z0-9-]+$" . + "false"^^ . + _:N627b152d60874fa3830b02402a03b335 . + "Online Mendelian Inheritance in Animals" . +_:N21583df1b70a47eb8045db4de403149a "trichdb" . +_:Na17e72babb36485ea700e6b33cc8b2a3 . + "C. elegans Gross Anatomy Ontology" . + "0000038" . +_:N8d81152bbfa24c91b4752cb8a547e227 "mo" . + _:N6cab9c7d976b48b9b78338ddb902c175 . + _:N0fdcd9cfc3a340a2bec94f2e2ffbe211 . +_:Ndbbcb701367746659991b1cc2718edfe "eco" . + "true"^^ . + . + "https://github.com/obophenotype/ctenophore-ontology" . + "false"^^ . + _:N60c59271ea914bdabedb9e0fba39028d . + _:N019afee8c3f8421c906f24d086bb4903 . +_:Nd70f3c5e24c64cb5be22ae8b9b2fd5b6 "bugbase.expt" . +_:Nf7e75ea6fe114b61b444b873f805abb1 . + "https://www.gsea-msigdb.org" . + _:N0b3c9abeb49a4d77b36d2b8c31c9f97f . +_:Nc3eff2448e4c4dcdb14e36d82c3dd78a . +_:N47ea57624b624ee0829c9e490a9c9689 . + "57-27-2" . + "None" . + _:N29b21a4d2b32496f934f1d9e44817b05 . +_:N52aa21f0fc3642a2abb7102e5a15bc62 "CAMEO" . + . + "None" . +_:Nd083ba5fa9a0442b82850f69a81e323a . +_:Nb07ff3e7597e401eb8c7c81e0e7fc5a1 "ONS" . + . + _:N29678e58a2f34abeaf60fb99e1ab7a1b . + . + _:N377a7a3aaf0447c7b90ae7ded75fe77c . +_:Nbc852d0a0e4d4a5e950aad5f4f5f6dd9 . + "None" . +_:N702f65f3cac14c4ab8198322458c7a0c . + . + _:Nb9eb74e0dfe44c47864d6566e6a7f30f . +_:N1742a07adb10402b93bcf196f9b6bd1c "MAIZEGDB.LOCUS" . +_:Ncaae98bf242d4ce2958146d76c9077c8 "PRIDE" . + "None" . + "Veterans Administration National Drug File" . + "https://identifiers.org/PO:$1" . + "false"^^ . + "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information." . + . + "^\\d{7}$" . + "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes." . + "https://identifiers.org/bgee.stage:$1" . + "None" . + . + "https://identifiers.org/odor:$1" . +_:N6b606d80567643b6844227f5162841dc . +_:N57296dfcb5bf451393b113c3da9ffd3d "datf" . + _:N7dc87295db9547ad963027e8ec301f6c . + "DrugBank Salts" . + "https://identifiers.org/drugbank:$1" . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" . +_:N1b06e0e75e0b4eb5868f507fb3b87416 "foodon" . + "https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_$1" . + "^PIRSF\\d{6}$" . +_:N3aa6d3817ca445138bff42f85a4f18e7 . + "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information." . + "true"^^ . +_:N14d14e3eee3a4ae78e5746d36598413b . + "MultiCellDS Digital snapshot" . +_:N04923ac2a58f48ccb25c6ce04da8578c . + "eff796f3-6195-11e5-8ac5-06603eb7f303" . + "ECMDB00005" . + . +_:Na041801c9c7a4b43b87c187f51050469 "UniProtKB-KW" . +_:N4f88af56a8b642e49e24184b4c4db4b3 . +_:N0d02b88e5feb46a6a1965f09435fc0eb . +_:N72fa97d11f644205abd395a5d80ba913 . + _:N4ce2f4635fab4a868be9c690a0046706 . + _:Nd7bb90bf128848db8cf259384a834911 . + "yongqunh@med.umich.edu" . + _:Na5e74422172a43e4bfa95cbf01b4d0eb . +_:N2cf8356159144eb4aec56e32d550e7a3 "APOLLO-SV" . + "false"^^ . +_:Nbbc5c21da6904ce5b1359776169b3843 . +_:N0bba5c28be574e35bdd2d70acca99355 "fsnp" . +_:N0d291347d56041d1b029237a8f3ed22f "funcbase.yeast" . + "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$" . +_:Nb961d98f60b34acfb5c91aa7dae33a6b "cath" . + "None" . +_:N7ddfa9fe4acd45a5898ff12424483c47 "aop.events" . + _:N5f6c5cdfbf8b4c33bbd719de6de2faf5 . +_:N6529be3816e4499a9858cb359e552b11 "ncit" . +_:Ncf0be15fea3145ebba3e27b7b864b15a "pw" . +_:N9f1e6406c06041b9a7a9a55aa90ce055 "geo" . + "false"^^ . + . +_:Na05b0043c1bf41ac91143f828e1b5da2 . +_:N19b3ec8f9bbd49e4b716b7ca8a5b3db1 . + "sheeba.samuel@uni-jena.de" . + "https://identifiers.org/igsn:$1" . + "false"^^ . +_:N8087e5df8dcf415ba0ab62206a4e49c1 . + . +_:N4b07372ff29c4def89704d7412f6dc5f . + "14" . +_:Ne779e778063b41949b5b14179c9a65cd . + _:N47b1fab38204459284bed1caf5eb8469 . +_:N6c457077e66348b3a57a181fdc0fb0b0 . +_:N4c97ac86a14442b389378ce92527dd0e . + _:N222e2ee8a6774a23be7daf7549f7edcc . +_:N763803ed4fb8400aba6eb4e5c11ead9b . + . + "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" . + _:Na75df49a0fcf4e98ab31b3f9a44e80f4 . + . + . +_:Nf2ab0ee9a5a54600b37586a0132b6f7e "HsapDv" . + _:Ndff7a38b0e884dc1adbe45a295627e9a . +_:Ndb9cbfabb93645ef834e33a03d41c767 . +_:N3a78565a506e4374a2030d4864f821e2 . + "false"^^ . + _:Nd9cc97671e994ddf81506a6acace7772 . +_:N92c0d88a7a804053b19ceebbe80a1000 . +_:N146756b2d93e48b3abb5bdbf9d01a4d1 "WBLS" . +_:N7a01610c10b149c98907a8e3bc48f12e "CATH.SUPERFAMILY" . +_:Nf7bbbb997d69421a9788742039059736 . + _:N6db6da6423bc4d25b67887d4a0bca78e . +_:Nd4c761c6c7dc4b2ebfd69b6065856ac4 . + "1050" . + "false"^^ . + "^C[0-9]{7}$" . +_:Nee85fa4e141b4c05ae222d4d4930658b "SEED.COMPOUND" . + _:Nbab5d5d813ec4160a367f91a0e549bd3 . +_:N5a171ec989b9441993c88f6698e031d2 . + _:Nc2abf192253d4c7784675dc8755fa6ea . + "Proteoform Atlas" . +_:N48358444510c4641bb66d3246ae30b9b "UM-BBD_pathwayID" . + "A gazetteer constructed on ontological principles" . + _:N3cb7b7e87a6943f2bb1aa31dfdeb8f39 . +_:N2bf6e0208f3c46b3a14ffdb4a5fb8e05 . +_:N12824a2c768a44b6922571c6ed72d297 . + "None" . + . + _:N834877a0b3cd49798da47b540665245a . +_:N5141597c30e9445187619b40776aaa75 . + "^[a-z0-9\\_]+$" . + _:N733a773d8fc943efa28c07e6dec2d923 . + "^MIR:000\\d{5}$" . +_:Nd36d36c03f5041f5b3bfad3fd819d9c2 . +_:N112c471e69ad4dfcab2b0174e41fe25a . + "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information." . + "2029" . + "The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions" . +_:N2a4d705f23374ec2bfde74cd426e8090 "WB_REF" . +_:N41e12e20b6064f16885a7c27dccbcb1f . +_:Nb06e9a84c22f46e2be84c09d24258bea . +_:Nfe8fd28e6a9449699164ed6b984f61c1 . +_:N2eff8d0d250a4a0091cf5e0308b2952e "TCDB" . +_:Nb07da192e05349bb9c11c791ce86ca7c . +_:N31e97ce1c06b44e6a5bc5e9b10d802fd "bdgp.insertion" . + _:N9429df94794345c5a72b59727548b010 . + . +_:N8da47ac6c9724597be39362a74741627 . +_:N7af4052c552443e6bfa5cb0e621be7f9 . +_:N05a5d3a9dfcc413fa0f14a15d978f106 . +_:N53483c13f14d404db4db9cd1f4f22072 . + _:N6d271f483f1c46f4abc79b089de789a8 . +_:Na3f4e1b16ede445992a72df4b6860645 "co_339" . + "^SMP\\d+$" . + "https://www.ebi.ac.uk/ols/ontologies/apollo_sv/terms?iri=http://purl.obolibrary.org/obo/APOLLO_SV_$1" . +_:N116f10c0e8d042fba0b907d09f4cde7b "HOMD.TAXON" . + "SM_UB-81" . + _:Nd0fe07d2ee0c44d8919512a1f6bdcbb2 . +_:Nd3f7c3a1ffdb4a509f0829395862ecb0 . + _:N157b058f79ee4e41a4d2d9b992a739fc . + "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information." . +_:N812ca9ddccbf4adb8bbd189344a9dfde "GOOGLE.PATENT" . +_:Ncfbfbf7adf6d467d93362b83f2f7d8d6 . +_:N51ebf49827934f618b5e721aee4c13ec . + "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations." . +_:N1762a242ae1444ed87a44fa3a9f39f2e . +_:N7f48290722af4170b0e004e5cc89de32 . +_:Nd28873daafbb41d190839b38fd44ca62 . + _:N2f8286531df84ed18f5b465900286a55 . + "http://www.alanwood.net/pesticides" . + "false"^^ . +_:Nf100bba0899a4dbd94602e7081c50a47 . +_:N3bab384af9e44982bc9c87bd9fb0826f . + "None" . + _:Nedf66421528943a98205745589ae1671 . + . + _:Nfc2cf66274e6459bba5c44f45eab645f . +_:N3834e6238e6d45e6aba6b45f32b21c82 . + _:N4346551db72549b792b04b09ad0ca006 . + "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples." . +_:Nca53cafa713c44a59b7842174655baf5 "rdfs" . + "false"^^ . + "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information." . +_:N5aa478ac516f49c1aa82c9a623aa7fa7 "ngl" . +_:Nb54b2d1d27e14db697226d06798187fd "oma.protein" . +_:N973d5f75197f4e62b4151541b0530d78 "FYPO" . +_:N50c1c070b34a45948a3d3be2872f9b40 "MOD" . + "None" . + "^\\d{7}$" . +_:Na4c7390a049047d7abc2772c484e9a03 . + _:Nf8832a4e981c402db43b2df254068d2c . + _:N30469ae779254e45b28628c629fb2819 . +_:Nbc144c07f23745d8b84755abb8e34dcd . +_:N640b034223eb44a894921b06e8bcaa90 . +_:N9f58eb2dd67e47c1b4203257529a1065 . +_:Ne2ff16c0e2034430ad35a612dccd7df2 "arxiv" . +_:N7b71e25f39bb40f6a44760cdcd7407e2 "eggnog" . +_:N2c736a2917194d4a8529d4b59bdac0e8 . +_:Nc8d75f149ccd4d1bba9b3f0cbe229fa3 . + _:Naa985f061c35486e87ebf3c88b78deca . + _:Ndd1a62f6d81042d18f27807fdd459eeb . + "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable." . + _:Nbeffd964b15e49d99ba68903a410160e . + "false"^^ . +_:N76fbd4da362e45179fb96c955303a067 . + _:Ncbc0b45c7da4482493fb037cddfadf27 . + "None" . + _:N3687da029cb9449889527882d1a97d98 . + "false"^^ . +_:Nc4c3cd43a9744c3fa62b2b1ecab9c38d . +_:N65892fc71b1349b88a4699c997008745 . + "false"^^ . +_:Nea36752324984e5abac9e503c0126c32 . +_:Nf745a67060d64ceca480829e59933188 . + "None" . +_:Nfc6eac62a3d943da9a877914473240bf . + "Cross-linker reagents ontology" . + "SoyBase is a repository for curated genetics, genomics and related data resources for soybean." . + _:N1f3d5dfb7a574eda97d5cec2ce7f4503 . +_:Nffacfdeaa7e141e785995eacb1ab6c63 "ito" . + . +_:N2ef3f44d14014b1f86fdad96aba18a35 . +_:N1363c706f5134c61a9dc3d7ebbcd94e5 . + _:N4867552bc0ad470381d1eb955cf6daeb . + _:N78a37736ae5341579e88dc7b83e18477 . +_:N92372427453e4fa1be60121054a5a95d . + _:N17f7ee79c8d948f3b2e54fce61d96dd3 . + _:N1ebc4df1cc5647698ce84e1dd3d6bc97 . +_:Nf7aa182e750f4f9ba4de28382494c883 "wikipathways" . +_:Nbdd2014d1c8a47a8aa7cd4921d40f5ca . + _:Nac7202322b6642e88ef206fa3373049d . + _:N1b6b11928efc447188612e6607a86fe9 . + "HOSAPI0399" . + _:Nf97621cadd184864b8bb38b1379885ab . + "MIPF0000002" . +_:N40df88fda60d4457b167f7806ad1a61c . + _:N80951b1ab1434ca197c942369315103d . + "false"^^ . + "https://identifiers.org/datanator.gene:$1" . + "Animal Genome QTL" . + "An ontology for description of concepts in the nutritional studies domain." . + "XB-GENE-922462" . +_:N4861324712544b5f87f5a179c365edc4 "dashr" . +_:Nc75b9d641ae646b2afbf36c12b5892f4 . + "false"^^ . +_:Nd5f86ae572d444a0aa5420fb0ce16f38 . +_:N3f74855957cc4290b5553ec37b98e070 "atfdb.family" . + "70" . +_:Na647065ea51f4a0eab7eab047f150d01 . +_:Nb35c7d4b4bac431f9026211d8ac18eeb "prosite" . +_:Nd129b41b00f241ddb45d8829c853bc41 . + "TarBase" . +_:N6475dd200d13470bb9a78ed072d14258 "mobidb" . +_:Nde98f3e8254d4bb79611b229db311f7a . + "https://www.ebi.ac.uk/ols/ontologies/ino/terms?iri=http://purl.obolibrary.org/obo/INO_$1" . +_:N0f68572c69e34220b6e8ba166c126bbe . + "None" . + "Ontology for Biobanking" . +_:Ncb16fad83be449218464ecddbbd11f78 "INSDC.CDS" . + "M00002" . +_:Nf05fd9c782464f5584caaa70a6ac4d62 . + _:N43ba2ab1a23840ac90812c12b47d746f . + _:Nd8a1ec81192247ab8f26499bc922bdf2 . + "^[A-Z0-9]{5}\\d+$" . + "0000078" . +_:N652c67cd8a8a4d81854b26eebfa8099a . +_:N1057f322324644d6b0168eb7de5317c9 . +_:N2b5aefc47a56479f81c4c136d20b089f "P7260" . +_:N982406cb66c1460698b1174fd99d031c "P3860" . + . + "None" . +_:N8024341cdc1f4df485803716766f6083 . +_:N98e42b19638e4318afd9e9f5e5201574 . + _:Nfc179558546a4c3ab6557bb365c0cf55 . + _:Nf03c55fac7ee41789821f227e4ed8a30 . +_:Ne53eca05f6a843df809b2b9322ab49a2 "gdsc" . + "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources." . + . + _:Nc6e3bf1c6c2e486d80a42a502c257846 . + "https://identifiers.org/degradome:$1" . + "https://identifiers.org/cgsc:$1" . + "Continuous Automated Model Evaluation" . +_:N540e031cef544870bfac81d2c660194e . + _:N48aaa3e52ad04e07b4d3638504fcfb57 . +_:N493a61e1743d49eb9fabdb8f302a11ac . +_:N9922564816cd43a2983729532f81e17f . + "false"^^ . + . +_:Ndd914931b0e54ea2b293f7cecaf09b36 . +_:Ne259d21f19a6401fa31720f2a506f657 . +_:N11386df2721d409b996eb9fd12a9f13a . +_:N469313bed1b94fd9b27952663e3298b2 . +_:N1f8c85e279244e9ebec8471c6f06da5a . +_:Na3fc6b806a004ba7913e387ffabb4567 "CHIRO" . + "false"^^ . + "Plant Genome Network" . +_:N012e73e24e164d5091f2ef68add1076a . + "The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes." . + . + "A comprehensive database of\n\nhuman H/ACA and C/D box snoRNAs." . +_:N95a5414b18c049bda20e49e4bc0c3bc3 "apd" . + _:Na032a97bf22547cdad8ea77c5ae5a02d . + _:N63b50ff859da4c35bc79ed2cfd16dcbe . + "Grape Ontology including OIV and bioversity descriptors. INRAE Jan 2021" . +_:Ne9d14b64e442469c9e151b64f2767c20 . + "^\\d+$" . + "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination." . +_:Neafa91395800491db2e362ff2c7563e8 . +_:Nf0b2b3668f1a4cd9b2665ef3cc3e4af3 . + "https://identifiers.org/unipathway.reaction:$1" . + "Human Metabolome Database" . +_:N09a4c8d5cb3e45c1ad495f3d3ee16692 "unii" . + . +_:Ncf095d3632bd41c386679905cdc3f692 . + "^\\d+$" . +_:Nd9cdfe549b604244a33fcab16fc4b028 "reproduceme" . + _:Nf03ae32997fe4ad7b673f64a284fe273 . + _:N1293f73624ea40d290b3f3c140dd59da . + "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome." . +_:Nd560a13b92ec43c3af60b7afbf6252c4 "gwascentral.phenotype" . + "None" . + _:Nc07514333578449a9c4aff4e8de23160 . +_:Ne45351f7025c43afad1c92133ddcd5fb . + _:N91ace8334a294aa398c2a713e21fa948 . +_:Ndeaf53cf76cf4df0995815aecb694682 . + "vladimir.n.mironov@gmail.com" . +_:Na8eef67650b0413c90e64bd79158af6e "EXAC.GENE" . + "Diseases Database" . +_:N2d6f11e8c8674dc38e77b759b4c348ed . + _:N68764d5f499a4ba0bf61d8db5a32a2c2 . + . + "None" . +_:Nf24359857419468c88bdc7dd7c69e377 "ocid" . + "PTN000000026" . + "L'ontologie EOL d\u00E9crit les conditions d'environnement des \u00E9levages d'animaux domestiques. Elle d\u00E9crit plus particuli\u00E8rement les modalit\u00E9s de l'alimentation, de l'environnement, de la structure des \u00E9levages et des syst\u00E8mes d'\u00E9levage" . +_:N7d979815dbf5468b91dbc5706ea92128 . +_:Nedbbcf0b1389456fbc914f3969c52e4d . +_:N51baf21f72644761ab0d7f0cf940fdce "addgene" . + "221058" . + "None" . + "false"^^ . +_:Nb2e57648972948cd976e286a900a446f . +_:N773ec9077dc14b548a21e115df8c1fb1 . + "http://www.ebi.ac.uk/chebi" . +_:N14f44d02819b4f76910fbed5e611513b . +_:Nec013b679fb34d1689c15e57aad10d1a . + "mbrochhausen@uams.edu" . + _:Nd9aed4821fc94cd88eb6dc89f080300d . + . + "false"^^ . +_:Na64ca7c8e1f743feb9047cddc3d178c1 . +_:Nc6e3bf1c6c2e486d80a42a502c257846 "DISPROT" . + "^MS:\\d{7}$" . + "CAS Chemical Registry" . +_:N17a29042c93b4657913cbfb3ea0279dc . + "GR:0080039" . + _:N1b49e39a2f084d8ba2dbf6e2f6eafdd2 . + "false"^^ . +_:N0e9781630dd54101825eef9c65c08679 "nmrshiftdb2" . + "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways." . +_:Nc2f0c2ce375e404b92e2068b4b28cef5 "LICEBASE" . + "G00123" . +_:N559d671aa4c744ba941a45bddf4dc893 . +_:Na33b1c27f3d944f4ab43d0f4448f0e68 . + "https://identifiers.org/bmrb:$1" . +_:N1d524366a9b64a93afddc655c297ebbc . +_:N3106f42356b44121a5a49b3fc9ee6124 . + "http://ctdbase.org/help/exposureHelp.jsp" . + "miRTarBase" . +_:Na14bdd0b1c3144f08293ba707ac828a5 "disprot.region" . +_:Naf77c6633cb045bd9ffcd900425f2a03 . +_:N5755deeb9e2f4df999c7a65ae340d162 . +_:N6dc88724e5f944e6b3644407aaf9c913 . +_:Nd56898ea16cf4568b61bd43a80ccec71 "mirbase" . +_:N05d7983d1b2a42f785a4cca5cd36416f . + "false"^^ . +_:Nb989893d31fd4facbd8134d089f0bba0 "MIRO" . +_:N165e8a378f9349208f6eed4fbf0386ec "OBIB" . + _:N91e9abecde844dd4a30e92080451677d . + "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$" . +_:Nf3feb006bf1145f4b171b4eda07e6e85 . + "An anatomical and developmental ontology for cephalopods" . +_:N45badbc31f5a411c801f780cd95125c7 . + "Ontology Lookup Service" . + "None" . +_:Ned26489a731b4f84ade0bc5e5d9b7b20 "iceo" . + "^cpd\\d+$" . + _:N2cd0977b9a1541019bf7ff37b75f4760 . + "false"^^ . +_:N6355fa6d44e240f595dee46f84f646be . +_:N60efb3f21f524b1cb11aba0271de19ca . + "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications)." . +_:Ne21c66dca39d445ba56633b5af0dc19a . +_:N3cb7b7e87a6943f2bb1aa31dfdeb8f39 . + _:Nceb92dc1652349e8983e25009fede9b7 . +_:Nc25d42d228bb492798ce68c6f3027cb4 "NCIT" . + . + _:N6a6ae0c5caf4414096395eb1282d2b67 . + _:N8b937fee15c744ed8a92f6f7bbb44884 . +_:Nad40ac724b394e9597d3d4f2079ce9ca . + "Ensembl Bacteria" . + _:N0a9b0d406fdc46ef86915ca1167ac085 . + "prgr_human" . + _:N7d7fa6c269a944dcaf2ff1255f01108b . + "false"^^ . +_:N75b355a4453a454a842dd019070145c2 "FPLX" . +_:Nd89c0d568d864590879d9115a7e1dbd5 . +_:N8d8de026f9cd404c8c3e4894b9f890ae "umbbd.enzyme" . + _:Nf7e75ea6fe114b61b444b873f805abb1 . + "Cell Signaling Technology Antibody" . +_:N4faf4cbec11d464d8ef57d266092c2da "matrixdb.association" . + _:N22428da90b604d75a6a5ee5baa4c7175 . + "false"^^ . + . +_:N492e4518975f4684a4babd8e357e822d . + "https://github.com/EcologicalSemantics/ecocore" . +_:N7158587263b9475f860a87210ce77426 "MS" . +_:N570bcf3bd0a343739a2f2d38fd8a24cf "KEGG.METAGENOME" . +_:N77916549a55a4a2ab7e9c8bb34d45c7b . + "https://identifiers.org/intact.molecule:$1" . + _:Nf100bba0899a4dbd94602e7081c50a47 . + "PMC\\d+" . +_:Nfb14c5b77e8f409b807fc76cfdc72dfd "aftol.taxonomy" . + "Medaka fish anatomy and development" . +_:N5ff5a89750ae452495906ad2c09baa1a . + "http://www.genenames.org" . +_:Ned9647448d964de2b8c85121ad4f09dd "ppo" . +_:N380156fbd7f1486fa12c9dd8bf92a69e . + "AKR" . + "^[\\w\\d\\.-]*$" . +_:N52d82bf701a046d29c5dbd5f511e5e52 . + _:Nb8035047343b406d8610abc4f03a4625 . +_:N21b2c759ad4a42009ce4ac52306f1a86 . + "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by \u2018gold\u2019 prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed \u2018gold\u2019 namespace. \n\nThe GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples." . + "false"^^ . + "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network." . + . +_:N86d73947ecf44134a7a7935f3aaa1f0f . + "Kinetic Simulation Algorithm Ontology" . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." . +_:Nf33a5e43e0934ba3bdb81d6a84d213a3 . + _:Nf1f8553106be48cf88a28c1a74925371 . + _:N88a3123acb21443a8c0c5afb50770fe9 . + _:N0c0863ecb98342d2a0ea0aae41946bdf . +_:N7af4052c552443e6bfa5cb0e621be7f9 "TAIR.PROTEIN" . + _:Na4c7390a049047d7abc2772c484e9a03 . +_:N673ed1b2027b45ff8437adf7b08a0ce0 . + _:N4e909cfbca6b4f309e5b274474752582 . + "https://obophenotype.github.io/cell-ontology/" . + "68513255-fc44-4041-bc4b-4fd2fae7541d" . + "^FMA:\\d+$" . +_:N44ba8e25fd9441028f2f5fd62bc8581d "doid" . +_:N492d8b595fb24237a04bce5fcaa28c93 . +_:N19a7cb2639b24536bdae5f4756c534cb . +_:N502df234c10442878564a508a3c3f14e "charprot" . + _:N5fa01e16d36244b4912bac69ef062b7d . +_:N592ea8f608ab489d9210f37aecbff7f8 . +_:Nde2b9f60eb324f2b8328c9fd0d3b10f2 . +_:N0098f1a2b6d74ac0b5169844f2400082 . +_:Nd0d6b48ee9224b3e9553d02608faa3f5 . +_:N6832ffd9340e48ae9cc2a982c45933dd . + "Database for Prokaryotic Operons" . + _:N96d6da5469f3442baacef53a0111911a . + "Virtual International Authority File" . + "Multum MediSource Lexicon" . +_:N3404232e07da4db19cbc18633d5daeb7 . + "None" . +_:Nd57d9e94855c48f38878f354bf4ea971 . + "22-46615880-T-C" . +_:N1d7048f17ede4b5ba4318dec3ad78df9 . +_:N1c65b69b1d754336afb15ff111461c0e "mmp.db" . +_:Nca1feea8a17d4634be588310f37d4c7a . +_:N624b04e6eb184c82b91c74875912e9cd "begdb" . +_:N059c0e55a70c4398b9057c67c7b5fee4 . + . +_:N5d7582520af045bdbabe819b2044b899 . + _:N0cfbf7b6f406434dabea6aa977faf4df . + "^\\d+$" . + _:Nef3f813744054860917374aafb7f397a . + "pheno@jax.org" . + _:N127201fe304d4276b93546dd233f9218 . + "MSMEG_3769" . + _:N498ec71c672c487faf82e641d72ad168 . +_:N1cdc3d391f934bac8d4ea029b3ddfcb0 . + "https://identifiers.org/bacmap.biog:$1" . +_:Nb03642c9ea6a4b5b88ce629411d65756 "dpo" . +_:N38d68031731b45fc869f30bf863b9369 "MOP" . + "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models." . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$" . + "false"^^ . +_:N878adb9451f5450e859da6fe14955ca3 "scdo" . +_:N771e1433af004242ba317966eb61c1a6 . +_:N03e569e011584982a5d01e2b497073e0 "ricenetdb.compound" . +_:N1a5cf1dcd13140968275dd88dc6bc1aa . + _:N5d163b2df4c648d6b19645489ab8dad9 . + . +_:N5fadf7ddf5da4432bbbd3a7e70bbee88 "VTO" . +_:Nb0971deb12004cd8b78480ddf7fd91b6 . +_:Nc8dcd652c91f46be9698e18322908dd0 . + "false"^^ . + "biomodels-net-support@lists.sf.net" . + "false"^^ . +_:N40a05f22345d46b0b0a3860ef15b96e7 . + "false"^^ . +_:N77620e69420a4f41849a55fb9d1b28f4 . +_:Na60ac262074b43cd93ea082f3089d969 "corum" . + "https://identifiers.org/multicellds.snapshot:$1" . + "None" . +_:Na7b90f5c91d84eda98405a4509c32360 "OrthoDB" . + "6038" . + "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources" . + _:Nb60d22eb00c047f1ad92598d37965608 . + . + "FaceBase Data Repository" . + . + "None" . + "None" . + _:N492e4518975f4684a4babd8e357e822d . +_:N4a96af6529a0486db7c78c2e7bbb7cd0 . + _:N3173319686db41d1beb6a6623af3f821 . + . +_:Nefc6379ac4154f5dbb4f638c3451a910 . +_:N9e347a783c2f4b6bb1a90cf777965fd3 . + _:Ne8f8a4fade904a5fbd45934a4076a8e5 . + "^\\d{7}$" . +_:Ne0c109e23c3949a187bf6db11e6d9c1e . + "false"^^ . + "None" . +_:N6f145783f88441ebaddd4758e9377e18 "mpid" . +_:N4014a7f386ce458ba2b30fce8df690b1 . + _:N8c345a7ea44f41b39eabbe7f6fcd90ec . + . +_:N91e7679b19bc484cbdb486fde626017a "ec-code" . +_:N13e02bf6ddcf40fa9a53f047ac9ab640 "metlin" . +_:N23d46f733fb44683bbada310dc68e00e "huge" . + "^\\d+$" . + _:N5a4550e9664c48a79de9ae513dab2e66 . + "cd00400" . + "false"^^ . +_:N189bd2fa55f4480ba42afa77a155593b "one" . + "Animal TFDB Family" . + _:N909cf920cb5a4bd4a382c80868ff31bb . + _:Nb4d85046409e4c6c84822aba4f510142 . + "false"^^ . +_:N8c7b905f620f49cfb51c38bfce50b7eb "TIGRFAM" . +_:N45b31a5d5f9a4026926f09580e207b15 . + _:N9d1c2262a5994b258750f78377039482 . + "Galen Ontology" . +_:N8a7ad7b64a4b44ae933687b24f724c4f "dc" . + "Identifiers.org Terms" . +_:Nae1591770e6c483ababa61bd4aeaeebc . + "JWS Online" . + "A*01:01:01:01" . +_:Nc11a35c85ea64cc8b27e282d6d0689fc . +_:N45badbc31f5a411c801f780cd95125c7 . +_:N26c0e60ce03949ddbf809b2a81c5fb5c "inchi" . + . + _:N35c3b60e90224ca7b85a88cabe00b518 . + "None" . +_:N78d525d2c90e47ee955188b2378f4e34 . +_:N2dca6345da8143568c84744f4918eea9 "UPHENO" . + "icdom:8500_3" . + "false"^^ . + _:N323a5d970ed4491e8dc17d29b54938a9 . +_:N41e12e20b6064f16885a7c27dccbcb1f "ENSEMBL" . +_:N9209fa1bf1f54d978b038d3ecf853153 . + "SPIKE Map" . +_:N08b35bbdff654872b45d9176b150b818 "ORYZABASE.STAGE" . +_:N5a8d8ed34246438ba7404b8c2a645357 . + "https://identifiers.org/rgd:$1" . +_:N42aed24c202843338c49c1001387a427 . + "https://identifiers.org/p3db.protein:$1" . + . + _:N0e56f2fe1ce446959dbe3544f2ad7443 . +_:N09d018d562964490a9eb14b44120aac3 . +_:N98cc88af9dd4416690a86ae4e3dc26c1 "conoserver" . +_:Nc91fdb6f9d724a3ca5a00a10c35d5d1c "gtex" . +_:Nea724f52f44743de80af90cf8fabed37 . + _:N982406cb66c1460698b1174fd99d031c . +_:Ne807677e0e1442e9a4550666596f8509 . + "https://identifiers.org/insdc:$1" . + . + _:N3e02f266b9bb4371a20d8e4616128253 . + "https://raw.githubusercontent.com/geneontology/unipathway/master/upa.obo" . + "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology" . + . + "https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http://purl.obolibrary.org/obo/AMPHX_$1" . +_:Na081a87d2f5c40788ce5b0481872753e . +_:N164195cec4df48098650a1c895078b6b . +_:Ncadade484e1e4435b403a745c811b71d . + "miRBase mature sequence" . +_:N610d5481271d47be9f7fa70bb2fae951 "GEO" . + _:N8992e8edc9224c6d9f95c5fb1b27488e . +_:N86953624bca34ef581b96348b228aefc . +_:N4ce4354ddb8145bea6948a75e9310721 "ClinVar" . + _:N39dd6587cbf444beb2f649cc0b3aada3 . + "None" . + . + "74" . + _:Na5fd9900a87a490e8e22efc24b6ea48c . + "Brain Architecture Knowledge Management System Neuroanatomical Ontology" . + "SEED Compound" . +_:Ncf35b4e3993b42efa7a8db18e0b46e87 . + "None" . +_:Na4577d31addb44a69c9007cf3b3e5011 . +_:N26e059824d9c4319ba8f360e20cf38fb . +_:Nf09c74910bde42dfbce5b42bd65699fc . + "^\\w+$" . + "false"^^ . +_:N37dcd37869d04075ac14a42ce6c901ad . +_:N640544fdf4574b97be207c3e042a8fe4 . + _:N0cecf057b24044c1ac8c6054050427a2 . + _:Nd8278c613a8d4fab877c514b0d2fa8b9 . +_:Nf35d168f193c4a37b75abfb5f7d767d0 . +_:N25dfcabf43cf4d898a84416f0a697e30 . + "mKIAA4200" . + "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts." . +_:N9e2a778e8f70486b93b5f9f11305697a . + "Orphanet" . + _:N36facfcefe684f008ba7b6dc4cc9b9df . +_:Nbe5f345e330a4e8180397c50c1b91a72 "nmr" . + "https://identifiers.org/d1id:$1" . +_:N62617277de30484c942f860c2417d016 . + "BioPortal Prefixes" . + "https://gitub.u-bordeaux.fr/erias/fideo" . + "^\\d{7}$" . + "^S\\w+(\\.)?\\w+(\\.)?$" . + "Social Behavior in insects" . + "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$" . + "Progenetix" . + "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database." . +_:N1afb14010c0f48f1a4f88848c97a3cdb . + "false"^^ . +_:N0e9781630dd54101825eef9c65c08679 . + "None" . + _:Nf345db3c3e454f47a550002c0cc7af15 . + _:N821eaec3b9b841b399ac2c80c7e332c6 . +_:N187829e6013f42abb745c5d1914e8799 "neurovault.collection" . + "None" . + . +_:N6b70dee5422f49a9b89cc06cab793bb1 "po" . +_:N345e94af83c24b8cb0f14a418927da5c . + _:N882541559c8649528baf3b8cf306a0ad . + "MeSH 2012" . + . +_:N2b391fd5963e475b9c380c052b34db86 . + _:Nd770bef2f4664300952b3b5b22824b6f . + "Vocabularies for describing exposure data to inform understanding of environmental health." . + _:N27ec583eaafd4399b035f01c72aeedf2 . + "false"^^ . + "SIGNOR-C41" . +_:N0676118ead1c4c1ea5ad6b30631b8995 . + . + _:N88dce4ec04da4328934d6b2032341c2a . +_:Nd3f7c3a1ffdb4a509f0829395862ecb0 . + "Tribolium Genome Database -- Insertion" . + _:Nd65cfb982d5a4c4ebcf4f4c8d5cbaca9 . + "Genomic Data Commons Data Portal" . + "The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities." . + . +_:N39fd177c704b4bb596d720ce17ed5704 . +_:Nce2d12a386224a2f831cbba54672321d "PLO" . + "http://www.cas.org/expertise/cascontent/registry/index.html" . +_:N34b639061bf543eaa12f958ac31d5c21 . + "https://identifiers.org/arrayexpress.platform:$1" . + "None" . +_:Nb46e8cffe1234a638bb4df81d4428848 . +_:N33d553c4864d4830906847c738808686 . +_:Nb4d85046409e4c6c84822aba4f510142 . +_:Nbe1fdcfca90d44e184da720b748d2d61 "MW.PROJECT" . +_:Nf801b1d6f03d4d47bdeb3e63822756c8 "covid19" . + "https://raw.githubusercontent.com/obophenotype/biological-spatial-ontology/master/bspo.obo" . + "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level)." . +_:Ne50daf0bbdd3412aba38933ac988046e . + _:N62a7fe4e510542dba8b2b54c9c374a31 . + . +_:Nb80cff7db3cf40eb970bd79eba460b40 "eol" . + "Drug Target Ontology" . + _:N232f2a2786a54e9b83c5822c7ba7d427 . + "mbrochhausen@gmail.com" . +_:N9291e4069462478ab2bc32a3f69bd76a . + "None" . + "TGME49_053730" . + "https://identifiers.org/mirnest:$1" . +_:N3984ebda21304b25b6aeed3951b12943 "sisu" . +_:Nf345db3c3e454f47a550002c0cc7af15 . +_:N64d3332d57084758a43f48d8cd32b3a2 . + "https://n2t.net/$1:$2" . +_:N40eb79a7e1cc4001adb6287243de59a0 "iceberg.family" . + "Relation Ontology" . +_:Nc9ae3f87817144339bfa48bd41b34446 . +_:Nc544bdde24ef40b386ed27a12a97c6cf . + _:N125c33fa4486418ebdbb8ec90a500168 . +_:N983ad9459f9a405e96dedc39afd614ab . + . +_:N1897c76731e548febe6646188fc1699d . +_:N3c0a6a09bf6f49fea5846e46cf512bd3 "MESH.2013" . +_:Nea524d2309e64b668303daeb4e073b02 . + _:N0aad24f38df746f89f2df1efafaca908 . + "DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).\nDANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.\nThese data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders." . + "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails." . + _:Ncf0268af00524ec183c837eb5ce40638 . +_:N4dbb1d5c927e44ef900c84c36b3f544d . + _:N77f906046c05437a8f60984a797c29ec . + "SNP to Transcription Factor Binding Sites" . +_:Nde238c6e5dc9469fb9643ee5a08e13d2 "mge" . + . +_:N2f26ccba4cdc4e8590d301c7c28e5b42 "co_338" . + . + "https://identifiers.org/iuphar.ligand:$1" . + _:N59d2db01e2e145d8986b36dcaa21d3ab . +_:N1d5138d4d40d4ada821c956b353c5c14 . +_:Nf79f194efe014147b71f608bce06f7fe . +_:N75f2fb47759c4edd923892aa39f5416b . + _:Nde1a34804050413faa027afc9020a051 . + "^\\d+$" . + "^\\w+$" . +_:N35dd8df0ac5f4f0b860b1d6f4fb118bf "CDAO" . + . + "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis." . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" . + _:N55fa236fed974add9ed021eb9e9b977d . + "None" . +_:N0d6d631e7f124914ad91d658948b1a0a "kegg.reaction" . +_:N355d7c0c800847ebb811230d3fc4b4c3 . + _:N3b8479c6ba30424db45bef3b67bc833f . +_:N3b3e8788c5ee4e4eafa9d6fef7b80caf "ERV" . + _:N6b72f1a1cee04a2394cb1228813c3f85 . +_:Nd56a2fd90ec04a45827aa2a730860a67 . +_:N1cd4eef3ad3a43c2930489523c6ac90f . + "Medical Data Models" . +_:N86b2ce9ef34a47469535068c27e73566 . +_:N9cd84d74eeb34485a1d04e55763044be . +_:N7c8b179998df4e85b5c5715eaa881c02 . + "https://github.com/infectious-disease-ontology-extensions/ido-virus" . +_:N8c0779a880fa4b8c8d282950a3b188f9 "mipmod" . +_:N67bc7924f2d046d2bf3656c781cb4e04 . + "DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences." . +_:N3fdb5811d37d4a9eb2666d753cb2f658 "ndc" . +_:N0cec9486fde94c9398be40f67deeadd0 . +_:Nadb66795053642739f6ad422f4d5d1ff . +_:N16120e5ec53343c2861916d342a1e316 . + "https://identifiers.org/proglyc:$1" . + "PROB_c0000005" . +_:N2b23a8ecbed54a35b3e9bb60fadf0819 . + _:Ne1f63c5865d6433ea9bac7c4f1c6c481 . + _:N295bb89bcf58416b943fa56488f29472 . +_:Nea8980a82f2a49b5b82c90dbbe2ff881 "EMAPA" . +_:N0dce48583ed640b8a0d4f37edf3b2134 . + . + "^[A-Za-z0-9\\-\\_]+$" . + _:N4a36bfe9b4da449da41632d19bc227a1 . + "Wheat ontology" . +_:Nd129b41b00f241ddb45d8829c853bc41 . +_:Ne642bd06a6b248c993edd23c0c43cf86 "paxdb.organism" . +_:Na3e73f719eeb4cec80fcc44f553a7f6c . + "https://github.com/data2health/contributor-role-ontology" . +_:N60be8fe58bc04c61b1598ea960df817c . +_:Nf951eed99fcd4930a20aa42e4070f3a1 "oryzabase.stage" . + "EDI_244000" . + _:N79d06e6ce47f49a097bfef701ad40203 . + _:N8b12d55083bf4eb3a728907f1df3d94c . + _:N9b7038963fb443e589f1f41412625cbe . + _:N97409ed999bf45e8a1b00dcb96fc5db3 . +_:N8b19bd4efd2b4c459beeea39c1cbec2c . +_:Nf66563d342c24187bdf9af887675e700 . +_:N5def2c8ffe9e418e9d900c3ce6c073f2 . +_:Nac4a058970f348cf926a013b7e6cc258 . + . + "https://identifiers.org/cst:$1" . + "http://oncotree.mskcc.org" . + _:N369f2f3b1bb04f82a3dbc2d819ca57c6 . +_:N9512305efe7d4ac1afadf57416daea35 . +_:Naa985f061c35486e87ebf3c88b78deca "allergome" . + "https://identifiers.org/chembl.compound:$1" . +_:N0210baeaa3a14abc8adcd29b8cf8031f . + "Saccharomyces Genome Database" . + "https://www.ebi.ac.uk/ols/ontologies/dron/terms?iri=http://purl.obolibrary.org/obo/DRON_$1" . +_:N269469a9bd474b478eab394efaac8a2f "PHYLOMEDB" . + _:N3951549e824a4c27b94baa3a83d9ef41 . +_:N224ef3290e2246baa4ea6d1e88c3c8d1 . + _:N979906e2029142dbab2a906081b1c9b4 . +_:Nf09c74910bde42dfbce5b42bd65699fc "aceview.worm" . +_:N699799359ef8439c91d6e2970bfc697e . +_:N6ead570fb40845d2925ac14610fe88cc "PROBONTO" . + _:N478f4c6c28aa44edb6963961c029cf51 . + "Planarian Phenotype Ontology" . +_:Na24c4e905acc4a7d82d3d2e6815c4f56 "GABI" . +_:N1e03cc8d249b4d1cbbd88e7229d77faa . + "AASequence:1009107926" . + "false"^^ . +_:N12d0c5071f6348bda4c794c315a90c68 . +_:N09afc57ab0af443fa7b02e4a5c522dd7 . + "https://identifiers.org/ricenetdb.mirna:$1" . +_:N76fe3058ee2e4fb3aeadac541d19b860 . + . +_:N49f2ebc6b927488b99f758efa9b71187 . +_:N0c8377f52b33454d8e9ae2056a3d5f81 "DRSC" . +_:N123d008c64c3454ea007bca0c42897e5 . +_:N469313bed1b94fd9b27952663e3298b2 . +_:Naf14f3ddcfb14c438a1692713bc12dd9 . +_:Nf2309524fc7c4afdb13aa6b32268839d . +_:Na9bda41ad9ba45fe95a413a6fac55691 "treebase" . + "https://identifiers.org/repeatsdb.protein:$1" . + "false"^^ . + "KEGG Enzyme" . + _:Nbb5ab6d476b64e079bb20e860ef64cbb . +_:N04132de35eca4c01b154eecad7e92f2c . +_:N2f8f2e31e9da4d7b8d572ba44649d98f . + "false"^^ . +_:N13e9ce673dd44009bdebb01de73c1609 . +_:N83dccb6a4ea44307bdc69eac0ab24e12 . + "100010" . +_:Nc48df8010e6b4a119e497233d22183c9 . +_:Nab5a3a77c6d946acac03d8d92fa8d745 . +_:N31e069f0d87047248a4d0e831762caf9 "microsporidia" . +_:Naf14f3ddcfb14c438a1692713bc12dd9 "spd" . +_:Nbd3857d53da147299b20034349498033 . +_:Nefe38e24fc614cac83402fa6da9fbfd1 "GMD.REF" . + "KW-1273" . +_:Nfdca8cd53df0492fa467d904eb20c195 "fma" . + _:Nf2276b7895ce49eaadfe35f0676015f0 . + "https://identifiers.org/swissregulon:$1" . +_:N35f4354a663a4f49ada249323642d768 "REX" . +_:N94c4885d8eea428f9bebdd3857c14841 . + "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records." . + "NeuroVault Collection" . + "None" . + "false"^^ . + "https://www.tcdb.org" . + _:N32c43bc0c40d41999ad2157a9c5b0fdb . +_:Na60ac262074b43cd93ea082f3089d969 . +_:Ncf3db61bff6d46e99d5595a4de0f1794 "IntAct" . + "false"^^ . +_:Nd79d1e2a28894093a619fe635e24b4d9 "PAZAR" . +_:Nce49de24f5db4abca9c19c7eab750f49 . + _:Nb8e1a056e7fc4ccb82a54586b1338f56 . +_:N4bd885249e3244d5a1d8671d9440332d . +_:N5a0941b6a2e045b2a303aa35c0a67e7d . +_:Na82f715018494cd4a0cc980e42a90f98 "UNIPATHWAY" . + _:N3d8196bb244642f89f49cdd7f93fb992 . + "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$" . +_:N7a9447d649024e51b306637bad32c4a5 . + "https://identifiers.org/pride.project:$1" . +_:N1f01c0ef875a4b429f6431c46b99bf01 "p3db.protein" . +_:N14f44d02819b4f76910fbed5e611513b . + . + "The Statistical Methods Ontology" . +_:Nd79d1e2a28894093a619fe635e24b4d9 . + "https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo" . + . +_:N7d42467cccb94a148f2aa536303c8c6f "mgi" . + "None" . + . +_:N83ecea0707b24cf49ac80437590b9d49 "piroplasma" . + "false"^^ . + "https://identifiers.org/elm:$1" . +_:N8babf19707bd44ff86ce333c385ce2ed . +_:N565cd27b027840668343bbd0d518dde6 "chemdb" . + "false"^^ . + _:Nec29b08342a048da88d4b210c4cf62c0 . + "None" . + "NONCODE v4 Gene" . +_:N218a8f8e47264c5db35e68df146738ab . + "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains." . + "The cBioPortal for Cancer Genomics" . + "http://www.cropontology.org/ontology/CO_331/Sweet%20Potato" . + "https://github.com/information-artifact-ontology/IAO/" . + . +_:N4f21a1c7504c41608aa0cb2b8b8c6c51 "cto" . +_:Nd105344f5a674f8da40de58746a7a30d "SGN" . +_:N3ed8e73d31c04ee8ba0bb30b19e5ee45 . +_:Nae7e93864dad48648d14348494e3a0f7 "HAMAP" . +_:N161e5d6596634b5790364bafab05b95f . +_:Nd770bef2f4664300952b3b5b22824b6f "ArachnoServer" . +_:N5755216235294d71a513e934d74787f3 "MACIE" . + "https://identifiers.org/jstor:$1" . + "None" . +_:N3a28ae1712df4fdb936c71a299ed914f . + _:Nfb006ad11aa845d29c428d9210e7596d . +_:Nd56a39b6e8b64646a56d00858863ca64 . +_:N41720a380ea74d43b4964ee5f5f11e0a . +_:Naefa37cac9cd48e7923e4294a55e978f . + _:N5d96e6d2d63e4ec4bee65745168e5d5b . +_:N114bf2184337497387eaab666666d33f . + "An ARK resolver as well as resolver built with common prefxies as in Identifiers.org" . +_:Ncb9917b58df64b37b8404efcd69abb80 . + . +_:N906a9573a32a41928a69567d7bf94f2a . + . + "https://www.ebi.ac.uk/ols/ontologies/mro/terms?iri=http://purl.obolibrary.org/obo/MRO_$1" . +_:Nd89c0d568d864590879d9115a7e1dbd5 . +_:Ne998f0e823ed4f81a98b7b55dc6e8b49 . +_:N0ec9c4ab425541cdb20a0252c6a1f18d . + _:N8dae0ebddda74e6eac2d650e06f0d858 . +_:Nfd72bc7032174dca8d111cf42d4417fd . +_:N37f5fac491e94c42b6adbfdf63b151b8 "MCCL" . +_:N4b59b891111e4cfca1a7edc28acdd398 . +_:N13d9dbcf3f5745e1b489eb0c3abada20 . +_:Nc43e85de811d4707ad8ce2b251f93063 . + _:N06a4323757b84dfdb324b81f3ecb1bb4 . + "TA14985" . +_:Nd936df41703242a5ac3f75b43e12115c . +_:Nd84a6d38db024ba8bb8563eb9a169f67 "homologene" . + _:Nca16cbfd166c4d66b844cb14f4eb2961 . + "https://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_$1" . + "https://github.com/DIDEO/DIDEO" . + "helpdesk@cropontology-curationtool.org" . + _:Ne255a9b140df4cbf8a569f461cc8646c . + "false"^^ . + "https://identifiers.org/maizegdb.locus:$1" . + "false"^^ . +_:N629ed54588c446d3bb55fc8ee9ea3910 "rrid" . + _:Nd74728cb9508436a9cbf4cd6a0701c9c . +_:N552d2e802ff14b3ebf6fbaece4567398 . + _:N6f08ce6ed1e348de98162382ed230dac . +_:Ne1bd9c1a0abc4becb989128b2c367f80 . +_:N0e56f2fe1ce446959dbe3544f2ad7443 . + "https://identifiers.org/umbbd.rule:$1" . +_:N6477dac462b74a28a7d0f0f860102700 . +_:N35aafd9a4c4e47819aabedd2d24f596d . + . + "None" . +_:N0cd29525d4d04c5ebf701a1eb8af2d5c . + . + . +_:N54243b25354245e281eaead2fce313c9 "Pfam" . + "haendel@ohsu.edu" . + _:Nb9db43753a944e438f46a49cf0f49600 . + "https://identifiers.org/MIR:$1" . + _:Nf2309524fc7c4afdb13aa6b32268839d . + "https://raw.githubusercontent.com/obophenotype/ctenophore-ontology/master/cteno.obo" . +_:N15b2bcfee70344738346916eb0cae76e . + _:Nf57ef7763459434c9ebc5f219e9e4036 . + "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population." . +_:Nd013f8df646c4a43b80e6e2b44761e99 . + _:N5ef18bff72764946b2049af377136444 . +_:N3da480d58f04497a9ea8d2898bbe6482 "EGA.STUDY" . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs." . +_:N79019a1f2e2b482396490f71fd8be002 . +_:N3997abfb2d2a4f0a89da2ff446f99886 "myco.smeg" . + . + _:N81fa2428bda3448b895115d1d3974b84 . +_:Ncd11b4372c99419dbace89d888d6520e "foodon" . + . + "https://identifiers.org/ped.ensemble:$1" . + "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation." . +_:N6f3ba733aa9a4f2fb8e817909050b1b9 . + "^\\d+$" . +_:Nadbb221a7b25496f982d048e5d887b4c . +_:Ndd2f4cfcb24b4478a7affb4068720ce6 "subtilist" . + . + "None" . + _:N559ec30784d6436d819eb07c2314164e . +_:Na5e3b91c1b4b4bf2b1a594967966d259 "MEDLINEPLUS" . +_:N6832ffd9340e48ae9cc2a982c45933dd . + . +_:Nfe1f64f2df5346d2a37a1079c5e32e57 . + _:N8d365642bb074b39aa26f60ff4125100 . +_:N98565da8e0af477ebed5f60b1526a6af "P6245" . +_:Nca5614f64e7d489fa89bbc308bd8d291 . + "true"^^ . + . +_:Ne7896cf685f14f12b98470f745d371f3 "COVID-19" . + "https://identifiers.org/rbk:$1" . +_:Nbd6b6515f64a48a19f289bf5f16b484f "IDO" . + "Unipathway" . +_:N5d7582520af045bdbabe819b2044b899 . +_:N4326544dcfe04c94b14b5b5399b843fb "myco.lepra" . +_:Ne46046e5bc744f1eab8c79624a9e10e7 . +_:N6a6ae0c5caf4414096395eb1282d2b67 . +_:N1faf6d0016ae4fe08602b875e9763b4a "bmrb" . + . + "None" . + _:N62f70f197fc14f119a36b5151844fcf0 . +_:N1cdc3d391f934bac8d4ea029b3ddfcb0 . + . + _:Nde85281448ac415798bffd45a69c0231 . +_:Nadd7f09834de4844b50fe7789dc2c57b . +_:N5ddd7575c6a241d1aeb83f4e8d9aeb41 . +_:Nd98b3eaa973e4bb6b5d1636c8a6fb148 . + "false"^^ . + "false"^^ . + "http://www.alanwood.net/pesticides/$1.html" . +_:N2d60432c616b4edc9fd039c65b8ae5ef . + "^PAR:\\d+$" . + "https://identifiers.org/clinvar:$1" . +_:N5ba4b2f0a79342fda49f778e0ab9e443 . +_:N27ec583eaafd4399b035f01c72aeedf2 "HsapDv" . +_:Nd89c0d568d864590879d9115a7e1dbd5 "sabiork.ec" . +_:Nda63fcc2e6b64682810c3f395079a01a "Coriell" . + _:N437906cbf04b4deaa1ce22e58219eb38 . +_:Na6bbcd7f96e54d48846f8d96eb075b93 "VSAO" . +_:N6ffe2f52c07e4208b7d246dc72c77752 . +_:Ne2dac13471f74033bd061f46b2a150cb . + "SM00015" . + "false"^^ . + "4892" . + "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations." . +_:Ndd7810b6d6874c8caea6bc9ffc98dd06 . +_:Ne98b0da091454eee9cd756a83991a496 . +_:N8775bd81d8d34abca1586d9d249afc6f . +_:N6271912426194d859a306b984ea6b363 . +_:Ncaa8161738004584ae77962f7ecf65e4 "door" . + "false"^^ . + "002368" . +_:N29dc67dc40a9472c89d57743f12ce6ac . +_:N48efc1343f67475e8dae8557faaf861a "STITCH" . +_:Nfc179558546a4c3ab6557bb365c0cf55 . +_:N08515055c8844de5b31d2d968cd023bc "ECOCORE" . + _:Nd05b0508ad72487c8e6a7b8ea798f7f9 . + _:N6ef46042796f440dabcf977213eae595 . + "None" . +_:Nf2e78d1163a34161a113520cff065308 "ScopusID" . + "3771992" . + _:N0c627110bf0a4d58b03b4cdd3b1127b8 . +_:N0743eb345dd94a2b97c8a76e2195c97c . + "Catalytic Site Atlas" . +_:N502df234c10442878564a508a3c3f14e . + "https://identifiers.org/ubio.namebank:$1" . +_:N21ce3a3785de46b79a1761d78fbbf1ee . +_:N513f6a8014654db4b8eeb6cfd848c0c3 "umbbd.reaction" . + "https://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_$1" . +_:N65d07f49b7f3479487e3323b6b79cbb6 . + _:N74cd2639e0ce4033a9bd409eca77b3f6 . +_:Na1c021a6fd8e483f8634a8067c86f63f . +_:N75f2fb47759c4edd923892aa39f5416b "LINCS.SMALLMOLECULE" . + "https://www.gbif.org/species/$1" . + "false"^^ . + "100" . +_:Ndde711597f0748f6b22cde7a6273c942 . + . + . +_:Nd3f7c3a1ffdb4a509f0829395862ecb0 "kegg.disease" . + "http://www.cropontology.org/ontology/CO_338/Chickpea" . +_:Ndd1a62f6d81042d18f27807fdd459eeb "cst.ab" . + _:Nc8416aadb1cf4368b6a5462ee8eb1794 . + "https://identifiers.org/dragondb.protein:$1" . +_:N5f293e52ff4a4e00b2883ee52edbd429 "SPD" . +_:N45b31a5d5f9a4026926f09580e207b15 . +_:Nf59e996ac87b4a0884a409916cdf3820 "MPIO" . + "1" . + _:N6e7b913763004999855db336399a53b9 . +_:N40a5ced526b84858a611f94ac2c19fd2 "P3345" . +_:N3fbd3e5cb7e24929ae23fde197128220 . + "^DAP\\d+$" . +_:N821122c9635940e79501b903341e5a59 . + _:N51b9555d52774d41be34b2033225166d . +_:N6754eae8b2ba4eda9f97849935ef7a6f "JAXMICE" . + _:N56571cf694194e319a800f477d072562 . +_:Nb6eef29bb1924ca9a085eb3051c0da0f . + "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds." . + "esegerd3@gmail.com" . +_:Nc677b50359f64594b3bd2315ed713a95 . +_:Na10d57773a2749f1a79935ab1e871353 . +_:N3a28ae1712df4fdb936c71a299ed914f . + "nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi." . +_:N59d9c3d1ec0c4b28a58ffad08fce0e43 . + _:N6fb39844caf14f31889e6b0f22091aa2 . + diff --git a/docs/_data/bioregistry.ttl b/docs/_data/bioregistry.ttl new file mode 100644 index 000000000..e1bdbd7b2 --- /dev/null +++ b/docs/_data/bioregistry.ttl @@ -0,0 +1,20369 @@ +@prefix bioregistry.collection: . +@prefix bioregistry.metaresource: . +@prefix bioregistry.resource: . +@prefix bioregistry.schema: . +@prefix foaf: . +@prefix orcid: . +@prefix rdf: . +@prefix rdfs: . +@prefix xml: . +@prefix xsd: . + + a bioregistry.schema:collection ; + rdfs:label "Resources mentioned in \"Sharing biological data: why, when, and how\"" ; + rdfs:comment "These resources were listed in \"Sharing biological data: why, when, and how\", which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible." ; + bioregistry.schema:contains bioregistry.resource:biostudies, + bioregistry.resource:bmrb, + bioregistry.resource:cellimage, + bioregistry.resource:ega.dataset, + bioregistry.resource:ega.study, + bioregistry.resource:emdb, + bioregistry.resource:empiar, + bioregistry.resource:genbank, + bioregistry.resource:geo, + bioregistry.resource:idr, + bioregistry.resource:insdc.sra, + bioregistry.resource:massive, + bioregistry.resource:panorama, + bioregistry.resource:pdb, + bioregistry.resource:peptideatlas.dataset, + bioregistry.resource:pride, + bioregistry.resource:ssbd.dataset, + bioregistry.resource:ssbd.project ; + bioregistry.schema:hasAuthor . + + a bioregistry.schema:collection ; + rdfs:label "Semantic Web Context" ; + rdfs:comment "Resources used in the semantic web, based on https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml." ; + bioregistry.schema:contains bioregistry.resource:ac, + bioregistry.resource:dcat, + bioregistry.resource:dcterms, + bioregistry.resource:dctypes, + bioregistry.resource:faldo, + bioregistry.resource:foaf, + bioregistry.resource:idot, + bioregistry.resource:oa, + bioregistry.resource:oboinowl, + bioregistry.resource:owl, + bioregistry.resource:prov, + bioregistry.resource:rdf, + bioregistry.resource:rdfs, + bioregistry.resource:void, + bioregistry.resource:xsd ; + bioregistry.schema:hasAuthor . + +bioregistry.metaresource:bioregistry a bioregistry.schema:metaresource ; + rdfs:label "Bioregistry" ; + rdfs:comment "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." ; + foaf:homepage "https://bioregistry.io" ; + bioregistry.schema:example "chebi" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver true ; + bioregistry.schema:resolver_formatter "https://bioregistry.io/$1:$2" . + + a bioregistry.schema:resource ; + rdfs:label "3D Metabolites" ; + rdfs:comment "3DMET is a database collecting three-dimensional structures of natural metabolites." ; + foaf:homepage "http://www.3dmet.dna.affrc.go.jp/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "B00162" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "3DMET" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "3dmet" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2796" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "3dmet" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^B\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/3dmet:$1" . + +bioregistry.resource:aao a bioregistry.schema:resource ; + rdfs:label "Amphibian gross anatomy" ; + rdfs:comment "None" ; + foaf:homepage "http://github.com/seger/aao" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "david.c.blackburn@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:abs a bioregistry.schema:resource ; + rdfs:label "Annotated Regulatory Binding Sites" ; + rdfs:comment "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "A0014" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "abs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ABS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "abs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^A\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/abs:$1" . + +bioregistry.resource:aceview.worm a bioregistry.schema:resource ; + rdfs:label "Aceview Worm" ; + rdfs:comment "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "aap-1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aceview.worm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ACEVIEW.WORM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aceview.worm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-z0-9-]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/aceview.worm:$1" . + +bioregistry.resource:addgene a bioregistry.schema:resource ; + rdfs:label "Addgene Plasmid Repository" ; + rdfs:comment "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "50943" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "addgene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "addgene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/addgene:$1" . + +bioregistry.resource:adw a bioregistry.schema:resource ; + rdfs:label "Animal natural history and life history" ; + rdfs:comment "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology." ; + foaf:homepage "http://www.animaldiversity.org" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "adw_geeks@umich.edu" ; + bioregistry.schema:example "Lycalopex_vetulus" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ADW" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "adw" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ADW" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "adw" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ADW" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z_a-z]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/adw:$1" . + +bioregistry.resource:aeo a bioregistry.schema:resource ; + rdfs:label "Anatomical Entity Ontology" ; + rdfs:comment "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology" ; + foaf:homepage "https://github.com/obophenotype/human-developmental-anatomy-ontology/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/obophenotype/human-developmental-anatomy-ontology/master/src/ontology/aeo.obo" ; + bioregistry.schema:email "J.Bard@ed.ac.uk" ; + bioregistry.schema:example "0001017" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aeo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/aeo/terms?iri=http://purl.obolibrary.org/obo/AEO_$1" . + +bioregistry.resource:affy.probeset a bioregistry.schema:resource ; + rdfs:label "Affymetrix Probeset" ; + rdfs:comment "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "243002_at" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AFFY.PROBESET" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "affy.probeset" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "affy.probeset" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "\\d{4,}((_[asx])?_at)?" ; + bioregistry.schema:provider_formatter "https://identifiers.org/affy.probeset:$1" . + +bioregistry.resource:afo a bioregistry.schema:resource ; + rdfs:label "Allotrope Merged Ontology Suite" ; + rdfs:comment "Allotrope Merged Ontology Suite" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "afo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/afo/terms?iri=http://purl.obolibrary.org/obo/AFO_$1" . + +bioregistry.resource:aftol.taxonomy a bioregistry.schema:resource ; + rdfs:label "Assembling the Fungal Tree of Life - Taxonomy" ; + rdfs:comment "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "959" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aftol.taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AFTOL.TAXONOMY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aftol.taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/aftol.taxonomy:$1" . + +bioregistry.resource:agricola a bioregistry.schema:resource ; + rdfs:label "Agricultural Online Access" ; + rdfs:comment "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century." ; + foaf:homepage "http://agricola.nal.usda.gov/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "50018" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "agricola" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AGRICOLA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "agricola" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AGRICOLA_ID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/agricola:$1" . + +bioregistry.resource:agro a bioregistry.schema:resource ; + rdfs:label "Agronomy Ontology" ; + rdfs:comment "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments" ; + foaf:homepage "https://github.com/AgriculturalSemantics/agro" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "m.a.laporte@cgiar.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AGRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "agro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AGRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AGRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/agro/terms?iri=http://purl.obolibrary.org/obo/AGRO_$1" . + +bioregistry.resource:aism a bioregistry.schema:resource ; + rdfs:label "Ontology for the Anatomy of the Insect SkeletoMuscular system" ; + rdfs:comment "The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research." ; + foaf:homepage "https://github.com/insect-morphology/aism" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "entiminae@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aism" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AISM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AISM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/aism/terms?iri=http://purl.obolibrary.org/obo/AISM_$1" . + +bioregistry.resource:allergome a bioregistry.schema:resource ; + rdfs:label "Allergome" ; + rdfs:comment "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1948" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ALLERGOME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Allergome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "allergome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "allergome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/allergome:$1" . + +bioregistry.resource:alzforum.mutation a bioregistry.schema:resource ; + rdfs:label "Alzforum Mutations" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "app-d678n-tottori" ; + bioregistry.schema:provider_formatter "https://www.alzforum.org/mutations/$1" . + +bioregistry.resource:amoebadb a bioregistry.schema:resource ; + rdfs:label "AmoebaDB" ; + rdfs:comment "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EDI_244000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "amoebadb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AMOEBADB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "amoebadb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^EDI_\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/amoebadb:$1" . + +bioregistry.resource:amphx a bioregistry.schema:resource ; + rdfs:label "The Amphioxus Development and Anatomy Ontology" ; + rdfs:comment "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)." ; + foaf:homepage "https://github.com/EBISPOT/amphx_ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "hescriva@obs-banyuls.fr" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AMPHX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AMPHX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "amphx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http://purl.obolibrary.org/obo/AMPHX_$1" . + +bioregistry.resource:antibodyregistry a bioregistry.schema:resource ; + rdfs:label "Antibody Registry" ; + rdfs:comment "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "493771" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "antibodyregistry" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "antibodyregistry" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ANTIBODYREGISTRY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/antibodyregistry:$1" . + +bioregistry.resource:antweb a bioregistry.schema:resource ; + rdfs:label "Ant Database" ; + rdfs:comment "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures." ; 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+ rdfs:comment "International repository of Adverse Outcome Pathways." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "98" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aop" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AOP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aop" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/aop:$1" . + +bioregistry.resource:aop.events a bioregistry.schema:resource ; + rdfs:label "AOPWiki (Key Event)" ; + rdfs:comment "International repository of Adverse Outcome Pathways." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; 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+ bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AOP.STRESSOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aop.stressor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/aop.stressor:$1" . + +bioregistry.resource:apd a bioregistry.schema:resource ; + rdfs:label "Antimicrobial Peptide Database" ; + rdfs:comment "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "01001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "apd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "apd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "APD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/apd:$1" . + +bioregistry.resource:aphidbase.transcript a bioregistry.schema:resource ; + rdfs:label "AphidBase Transcript" ; + rdfs:comment "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ACYPI000159" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aphidbase.transcript" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aphidbase.transcript" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "APHIDBASE.TRANSCRIPT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^ACYPI\\d{6}(-RA)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/aphidbase.transcript:$1" . + +bioregistry.resource:apid.interactions a bioregistry.schema:resource ; + rdfs:label "APID Interactomes" ; + rdfs:comment "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P01116" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "apid.interactions" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "APID.INTERACTIONS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "apid.interactions" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/apid.interactions:$1" ; + bioregistry.schema:provides bioregistry.resource:uniprot . + +bioregistry.resource:apo a bioregistry.schema:resource ; + rdfs:label "Ascomycete phenotype ontology" ; + rdfs:comment "A structured controlled vocabulary for the phenotypes of Ascomycete fungi" ; + foaf:homepage "http://www.yeastgenome.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "stacia@stanford.edu" ; + bioregistry.schema:example "0000184" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "apo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "APO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "YPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "APO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.yeastgenome.org/observable/APO:$1" . + +bioregistry.resource:apollo_sv a bioregistry.schema:resource ; + rdfs:label "Apollo Structured Vocabulary" ; + rdfs:comment "Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models" ; + foaf:homepage "https://github.com/ApolloDev/apollo-sv" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "MBrochhausen@uams.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "APOLLO-SV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "APOLLO_SV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "apollo_sv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/apollo_sv/terms?iri=http://purl.obolibrary.org/obo/APOLLO_SV_$1" . + +bioregistry.resource:arachnoserver a bioregistry.schema:resource ; + rdfs:label "ArachnoServer" ; + rdfs:comment "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AS000060" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARACHNOSERVER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arachnoserver" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ArachnoServer" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arachnoserver" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^AS\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/arachnoserver:$1" . + +bioregistry.resource:araport a bioregistry.schema:resource ; + rdfs:label "Arabidopsis Information Portal" ; + rdfs:comment "None" ; + foaf:homepage "https://www.araport.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AT1G01010" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Araport" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Araport" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:provider_formatter "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1" . + +bioregistry.resource:ardb a bioregistry.schema:resource ; + rdfs:label "Antibiotic Resistance Genes Database" ; + rdfs:comment "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CAE46076" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ardb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ardb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z_]{3}[0-9]{4,}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ardb:$1" . + +bioregistry.resource:ark a bioregistry.schema:resource ; + rdfs:label "Archival Resource Key" ; + rdfs:comment "An Archival Resource Key (ARK) is a Uniform Resource Locator (URL) that is a multi-purpose persistent identifier for information objects of any type." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "/12345/fk1234" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ark" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ark" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^(ark\\:)/*[0-9A-Za-z]+(?:/[\\w/.=*+@\\$-]*)?(?:\\?.*)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ARK:$1" . + +bioregistry.resource:aro a bioregistry.schema:resource ; + rdfs:label "Antibiotic Resistance Ontology" ; + rdfs:comment "Antibiotic resistance genes and mutations" ; + foaf:homepage "https://github.com/arpcard/aro" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "card@mcmaster.ca" ; + bioregistry.schema:example "1000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/aro/terms?iri=http://purl.obolibrary.org/obo/ARO_$1" . + +bioregistry.resource:arrayexpress a bioregistry.schema:resource ; + rdfs:label "ArrayExpress" ; + rdfs:comment "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "E-MEXP-1712" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARRAYEXPRESS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arrayexpress" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arrayexpress" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[AEP]-\\w{4}-\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/arrayexpress:$1" . + +bioregistry.resource:arrayexpress.platform a bioregistry.schema:resource ; + rdfs:label "ArrayExpress Platform" ; + rdfs:comment "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "A-GEOD-50" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARRAYEXPRESS.PLATFORM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arrayexpress.platform" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arrayexpress.platform" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[AEP]-\\w{4}-\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/arrayexpress.platform:$1" . + +bioregistry.resource:arraymap a bioregistry.schema:resource ; + rdfs:label "ArrayMap" ; + rdfs:comment "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "icdom:8500_3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARRAYMAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arraymap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arraymap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[\\w\\-:,]{3,64}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/arraymap:$1" . + +bioregistry.resource:arxiv a bioregistry.schema:resource ; + rdfs:label "arXiv" ; + rdfs:comment "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0807.4956v1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ARXIV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arxiv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "arxiv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^(\\w+(\\-\\w+)?(\\.\\w+)?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/arxiv:$1" . + +bioregistry.resource:asap a bioregistry.schema:resource ; + rdfs:label "A Systematic Annotation Package for Community Analysis of Genomes" ; + rdfs:comment "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources." ; + foaf:homepage "https://asap.genetics.wisc.edu/asap/ASAP1.htm" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ABE-0009634" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ASAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "asap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "asap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ASAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ASAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ] ; + bioregistry.schema:pattern "^[A-Za-z0-9-]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/asap:$1" . + +bioregistry.resource:ascl a bioregistry.schema:resource ; + rdfs:label "Astrophysics Source Code Library" ; + rdfs:comment "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1801.012" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ascl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ASCL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ascl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9\\.]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ascl:$1" . + +bioregistry.resource:asin a bioregistry.schema:resource ; + rdfs:label "Amazon Standard Identification Number" ; + rdfs:comment "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0471491039" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ASIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "asin" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "asin" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]{10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/asin:$1" . + +bioregistry.resource:aspgd.locus a bioregistry.schema:resource ; + rdfs:label "Aspergillus Genome Database" ; + rdfs:comment "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information." ; + foaf:homepage "http://www.aspergillusgenome.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ASPL0000349247" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aspgd.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aspgd.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AspGD_LOCUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ASPGD.LOCUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/aspgd.locus:$1" . + +bioregistry.resource:aspgd.protein a bioregistry.schema:resource ; + rdfs:label "AspGD Protein" ; + rdfs:comment "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ASPL0000349247" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ASPGD.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aspgd.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "aspgd.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/aspgd.protein:$1" . + +bioregistry.resource:asrp a bioregistry.schema:resource ; + rdfs:label "Arabidopsis Small RNA Project" ; + rdfs:comment "None" ; + foaf:homepage "https://asrp.danforthcenter.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ASRP1423" . + +bioregistry.resource:atc a bioregistry.schema:resource ; + rdfs:label "Anatomical Therapeutic Chemical Classification System" ; + rdfs:comment "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "A10BA02" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P267" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ATC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ATC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/atc:$1" . + +bioregistry.resource:atcc a bioregistry.schema:resource ; + rdfs:label "American Type Culture Collection" ; + rdfs:comment "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences." ; + foaf:homepage "https://www.lgcstandards-atcc.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "11303" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ATCC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atcc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atcc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ATCC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/atcc:$1" . + +bioregistry.resource:atcvet a bioregistry.schema:resource ; + rdfs:label "Anatomical Therapeutic Chemical Vetinary" ; + rdfs:comment "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "QJ51RV02" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atcvet" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atcvet" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ATCVET" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^Q[A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/atcvet:$1" . + +bioregistry.resource:atfdb.family a bioregistry.schema:resource ; + rdfs:label "Animal TFDB Family" ; + rdfs:comment "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CUT" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atfdb.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atfdb.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ATFDB.FAMILY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/atfdb.family:$1" . + +bioregistry.resource:atol a bioregistry.schema:resource ; + rdfs:label "Animal Trait Ontology for Livestock" ; + rdfs:comment "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production." ; + foaf:homepage "http://www.atol-ontology.com" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "pylebail@rennes.inra.fr" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ATOL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "atol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/atol/terms?iri=http://purl.obolibrary.org/obo/ATOL_$1" . + +bioregistry.resource:autdb a bioregistry.schema:resource ; + rdfs:label "AutDB" ; + rdfs:comment "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ADA" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "AUTDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "autdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "autdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z]+[A-Z-0-9]{2,}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/autdb:$1" . + +bioregistry.resource:bacdive a bioregistry.schema:resource ; + rdfs:label "Bacterial Diversity Metadatabase" ; + rdfs:comment "BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "131392" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bacdive" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bacdive" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bacdive:$1" . + +bioregistry.resource:bacmap.biog a bioregistry.schema:resource ; + rdfs:label "BacMap Biography" ; + rdfs:comment "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1050" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bacmap.biog" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BACMAP.BIOG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bacmap.biog" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bacmap.biog:$1" . + +bioregistry.resource:bacmap.map a bioregistry.schema:resource ; + rdfs:label "BacMap Map" ; + rdfs:comment "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AP011135" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bacmap.map" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BACMAP.MAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bacmap.map" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+(\\_)?\\d+(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bacmap.map:$1" . + +bioregistry.resource:bactibase a bioregistry.schema:resource ; + rdfs:label "Bactibase: a database dedicated to bacteriocins" ; + rdfs:comment "None" ; + foaf:homepage "http://bactibase.hammamilab.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BAC045" ; + bioregistry.schema:provider_formatter "http://bactibase.hammamilab.org/$1" . + +bioregistry.resource:bams a bioregistry.schema:resource ; + rdfs:label "Brain Architecture Knowledge Management System Neuroanatomical Ontology" ; + rdfs:comment "None" ; + foaf:homepage "https://bams1.org" ; + bioregistry.schema:deprecated true . + +bioregistry.resource:bao a bioregistry.schema:resource ; + rdfs:label "BioAssay Ontology" ; + rdfs:comment "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis." ; + foaf:homepage "http://bioassayontology.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0002989" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bao:$1" . + +bioregistry.resource:bcio a bioregistry.schema:resource ; + rdfs:label "The Behaviour Change Intervention Ontology" ; + rdfs:comment "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation." ; + foaf:homepage "https://www.humanbehaviourchange.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BCI-O" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bcio" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/bcio/terms?iri=http://purl.obolibrary.org/obo/BCIO_$1" . + +bioregistry.resource:bco a bioregistry.schema:resource ; + rdfs:label "Biological Collections Ontology" ; + rdfs:comment "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys." ; + foaf:homepage "https://github.com/tucotuco/bco" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "rlwalls2008@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/bco/terms?iri=http://purl.obolibrary.org/obo/BCO_$1" . + +bioregistry.resource:bdgp.est a bioregistry.schema:resource ; + rdfs:label "Berkeley Drosophila Genome Project EST database" ; + rdfs:comment "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI)." ; + foaf:homepage "http://www.fruitfly.org/EST/index.shtml" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EY223054.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BDGP.EST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BDGP_EST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bdgp.est" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bdgp.est" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+(\\.)?(\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bdgp.est:$1" . + +bioregistry.resource:bdgp.insertion a bioregistry.schema:resource ; + rdfs:label "BDGP insertion DB" ; + rdfs:comment "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "KG09531" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bdgp.insertion" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bdgp.insertion" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BDGP.INSERTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bdgp.insertion:$1" . + +bioregistry.resource:bdsc a bioregistry.schema:resource ; + rdfs:label "Bloomington Drosophila Stock Center" ; + rdfs:comment "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "33607" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bdsc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bdsc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bdsc:$1" . + +bioregistry.resource:beetlebase a bioregistry.schema:resource ; + rdfs:label "Tribolium Genome Database -- Insertion" ; + rdfs:comment "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications." ; + foaf:homepage "http://www.beetlebase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TC010103" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "beetlebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BEETLEBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "beetlebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BEETLEBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^TC\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/beetlebase:$1" . + +bioregistry.resource:begdb a bioregistry.schema:resource ; + rdfs:label "Benchmark Energy & Geometry Database" ; + rdfs:comment "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4214" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BEGDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "begdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "begdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/begdb:$1" . + +bioregistry.resource:bel a bioregistry.schema:resource ; + rdfs:label "Biological Expression Language" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "9-1-1 Complex" . + +bioregistry.resource:bfo a bioregistry.schema:resource ; + rdfs:label "Basic Formal Ontology" ; + rdfs:comment "The upper level ontology upon which OBO Foundry ontologies are built." ; + foaf:homepage "http://ifomis.org/bfo/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "phismith@buffalo.edu" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bfo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/bfo/terms?iri=http://purl.obolibrary.org/obo/BFO_$1" . + +bioregistry.resource:bgee.family a bioregistry.schema:resource ; + rdfs:label "Bgee family" ; + rdfs:comment "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ENSFM00500000270089" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BGEE.FAMILY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bgee.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bgee.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(ENSFM|ENSGTV:)\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bgee.family:$1" . + +bioregistry.resource:bgee.gene a bioregistry.schema:resource ; + rdfs:label "Bgee gene" ; + rdfs:comment "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "FBgn0000015" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bgee.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bgee.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BGEE.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z]+\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bgee.gene:$1" . + +bioregistry.resource:bgee.organ a bioregistry.schema:resource ; + rdfs:label "Bgee organ" ; + rdfs:comment "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EHDAA:2185" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bgee.organ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BGEE.ORGAN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bgee.organ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bgee.organ:$1" . + +bioregistry.resource:bgee.stage a bioregistry.schema:resource ; + rdfs:label "Bgee stage" ; + rdfs:comment "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HsapDO:0000004" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BGEE.STAGE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bgee.stage" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bgee.stage" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bgee.stage:$1" . + +bioregistry.resource:bigg.compartment a bioregistry.schema:resource ; + rdfs:label "BiGG Compartment" ; + rdfs:comment "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "c" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIGG.COMPARTMENT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bigg.compartment" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bigg.compartment" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-z_A-Z]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bigg.compartment:$1" . + +bioregistry.resource:bigg.metabolite a bioregistry.schema:resource ; + rdfs:label "BiGG Metabolite" ; + rdfs:comment "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "12dgr161" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIGG.METABOLITE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bigg.metabolite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bigg.metabolite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[a-z_A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bigg.metabolite:$1" . + +bioregistry.resource:bigg.model a bioregistry.schema:resource ; + rdfs:label "BiGG Model" ; + rdfs:comment "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "iECABU_c1320" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bigg.model" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIGG.MODEL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bigg.model" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-z_A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bigg.model:$1" . + +bioregistry.resource:bigg.reaction a bioregistry.schema:resource ; + rdfs:label "BiGG Reaction" ; + rdfs:comment "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "13GS" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIGG.REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bigg.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bigg.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-z_A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bigg.reaction:$1" . + +bioregistry.resource:bila a bioregistry.schema:resource ; + rdfs:label "Bilateria anatomy" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BILA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BILA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] . + +bioregistry.resource:bindingdb a bioregistry.schema:resource ; + rdfs:label "BindingDB" ; + rdfs:comment "BindingDB is the first public database of protein-small molecule affinity data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "e999" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bindingdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BindingDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bindingdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BINDINGDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bindingdb:$1" . + +bioregistry.resource:biocarta.pathway a bioregistry.schema:resource ; + rdfs:label "BioCarta Pathway" ; + rdfs:comment "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "h_aktPathway" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biocarta.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biocarta.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOCARTA.PATHWAY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^([hm]\\_)?\\w+Pathway$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biocarta.pathway:$1" . + +bioregistry.resource:biocatalogue.service a bioregistry.schema:resource ; + rdfs:label "BioCatalogue Service" ; + rdfs:comment "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "614" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOCATALOGUE.SERVICE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biocatalogue.service" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biocatalogue.service" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biocatalogue.service:$1" . + +bioregistry.resource:biocyc a bioregistry.schema:resource ; + rdfs:label "BioCyc collection of metabolic pathway databases" ; + rdfs:comment "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms." ; + foaf:homepage "http://biocyc.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ECOLI:CYT-D-UBIOX-CPLX" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BioCyc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BioCyc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOCYC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biocyc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biocyc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biocyc:$1" . + +bioregistry.resource:biogrid a bioregistry.schema:resource ; + rdfs:label "BioGRID" ; + rdfs:comment "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "31623" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BioGRID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biogrid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOGRID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biogrid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biogrid:$1" . + +bioregistry.resource:biolink a bioregistry.schema:resource ; + rdfs:label "BioLink Model" ; + rdfs:comment "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Gene" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biolink" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biolink" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\S+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biolink:$1" . + +bioregistry.resource:biominder a bioregistry.schema:resource ; + rdfs:label "Bio-MINDER Tissue Database" ; + rdfs:comment "Database of the dielectric properties of biological tissues." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biominder" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOMINDER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biominder" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-z0-9\\-]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biominder:$1" . + +bioregistry.resource:biomodels.db a bioregistry.schema:resource ; + rdfs:label "BioModels Database" ; + rdfs:comment "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests." ; + foaf:homepage "https://www.ebi.ac.uk/biomodels/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BIOMD0000000048" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOMD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomodels.db" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomodels.db" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOMODELS.DB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biomodels.db:$1" . + +bioregistry.resource:biomodels.kisao a bioregistry.schema:resource ; + rdfs:label "Kinetic Simulation Algorithm Ontology" ; + rdfs:comment "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment." ; + foaf:homepage "http://co.mbine.org/standards/kisao" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "biomodels-net-support@lists.sf.net" ; + bioregistry.schema:example "KISAO_0000057" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kisao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KISAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomodels.kisao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KISAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KISAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomodels.kisao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^KISAO_\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biomodels.kisao:$1" . + +bioregistry.resource:biomodels.teddy a bioregistry.schema:resource ; + rdfs:label "Terminology for Description of Dynamics" ; + rdfs:comment "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TEDDY_0000066" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomodels.teddy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOMODELS.TEDDY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TEDDY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "teddy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomodels.teddy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^TEDDY_\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biomodels.teddy:$1" . + +bioregistry.resource:biomodels.vocabulary a bioregistry.schema:resource ; + rdfs:label "SBML RDF Vocabulary" ; + rdfs:comment "Vocabulary used in the RDF representation of SBML models." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "rateRule" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOMODELS.VOCABULARY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomodels.vocabulary" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomodels.vocabulary" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Za-z]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biomodels.vocabulary:$1" . + +bioregistry.resource:bionumbers a bioregistry.schema:resource ; + rdfs:label "BioNumbers" ; + rdfs:comment "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "104674" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bionumbers" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIONUMBERS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bionumbers" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bionumbers:$1" . + +bioregistry.resource:bioportal a bioregistry.schema:resource ; + rdfs:label "BioPortal" ; + rdfs:comment "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1046" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bioportal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bioportal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOPORTAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bioportal:$1" . + +bioregistry.resource:bioproject a bioregistry.schema:resource ; + rdfs:label "BioProject" ; + rdfs:comment "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PRJDB3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bioproject" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bioproject" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOPROJECT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^PRJ[DEN][A-Z]\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bioproject:$1" . + +bioregistry.resource:bioregistry a bioregistry.schema:resource ; + rdfs:label "Bioregistry" ; + rdfs:comment "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." ; + foaf:homepage "https://bioregistry.io" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cthoyt@gmail.com" ; + bioregistry.schema:example "bioregistry" ; + bioregistry.schema:provider_formatter "https://bioregistry.io/registry/$1" . + +bioregistry.resource:bioregistry.collection a bioregistry.schema:resource ; + rdfs:label "Bioregistry Collections" ; + rdfs:comment "Manually curated collections of resources stored in the bioregistry" ; + foaf:homepage "https://bioregistry.io/collection" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cthoyt@gmail.com" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://bioregistry.io/collection/$1" . + +bioregistry.resource:biorxiv a bioregistry.schema:resource ; + rdfs:label "bioRxiv" ; + rdfs:comment "None" ; + foaf:homepage "https://www.biorxiv.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bioRxiv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] . + +bioregistry.resource:biosample a bioregistry.schema:resource ; + rdfs:label "BioSample" ; + rdfs:comment "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SAMEA2397676" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biosample" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biosample" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOSAMPLE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^SAM[NED](\\w)?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biosample:$1" . + +bioregistry.resource:biosimulators a bioregistry.schema:resource ; + rdfs:label "BioSimulators" ; + rdfs:comment "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "vcell" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biosimulators" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "[a-zA-Z0-9-_]+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biosimulators:$1" . + +bioregistry.resource:biosystems a bioregistry.schema:resource ; + rdfs:label "BioSystems" ; + rdfs:comment "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biosystems" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biosystems" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOSYSTEMS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biosystems:$1" . + +bioregistry.resource:biotools a bioregistry.schema:resource ; + rdfs:label "BioTools" ; + rdfs:comment "Tool and data services registry." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "uniprotkb" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biotools" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIOTOOLS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biotools" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z0-9\\_]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biotools:$1" . + +bioregistry.resource:birnlex a bioregistry.schema:resource ; + rdfs:label "Biomedical Informatics Research Network Lexicon" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BIRNLEX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:bitterdb.cpd a bioregistry.schema:resource ; + rdfs:label "BitterDB Compound" ; + rdfs:comment "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "46" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bitterdb.cpd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bitterdb.cpd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BITTERDB.CPD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bitterdb.cpd:$1" . + +bioregistry.resource:bitterdb.rec a bioregistry.schema:resource ; + rdfs:label "BitterDB Receptor" ; + rdfs:comment "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BITTERDB.REC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bitterdb.rec" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bitterdb.rec" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bitterdb.rec:$1" . + +bioregistry.resource:bmrb.restraint a bioregistry.schema:resource ; + rdfs:label "NMR Restraints Grid" ; + rdfs:comment "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively." ; + foaf:homepage "https://restraintsgrid.bmrb.io/NRG/MRGridServlet" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "28789" ; + bioregistry.schema:provider_formatter "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1" . + +bioregistry.resource:bold.taxonomy a bioregistry.schema:resource ; + rdfs:label "Barcode of Life database" ; + rdfs:comment "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information." ; + foaf:homepage "http://www.barcodinglife.com" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "27267" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bold.taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bold.taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BOLD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BOLD.TAXONOMY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bold.taxonomy:$1" . + +bioregistry.resource:bpdb a bioregistry.schema:resource ; + rdfs:label "Bio-Pesticides DataBase" ; + rdfs:comment "None" ; + foaf:homepage "https://sitem.herts.ac.uk/aeru/bpdb/index.htm" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2404" ; + bioregistry.schema:provider_formatter "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm" . + +bioregistry.resource:brenda a bioregistry.schema:resource ; + rdfs:label "BRENDA, The Comprehensive Enzyme Information System" ; + rdfs:comment "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data." ; + foaf:homepage "http://www.brenda-enzymes.info" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1.1.1.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BRENDA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BRENDA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "brenda" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BRENDA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "brenda" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/brenda:$1" . + +bioregistry.resource:broad a bioregistry.schema:resource ; + rdfs:label "Broad Fungal Genome Initiative" ; + rdfs:comment "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "S7000002168151102" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BROAD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "broad" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "broad" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^S\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/broad:$1" . + +bioregistry.resource:bs a bioregistry.schema:resource ; + rdfs:label "Biosapiens" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:bspo a bioregistry.schema:resource ; + rdfs:label "Biological Spatial Ontology" ; + rdfs:comment "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces" ; + foaf:homepage "https://github.com/obophenotype/biological-spatial-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/obophenotype/biological-spatial-ontology/master/bspo.obo" ; + bioregistry.schema:email "cjmungall@lbl.gov" ; + bioregistry.schema:example "0000029" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BSPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BSPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bspo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BSPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/bspo/terms?iri=http://purl.obolibrary.org/obo/BSPO_$1" . + +bioregistry.resource:bto a bioregistry.schema:resource ; + rdfs:label "BRENDA tissue / enzyme source" ; + rdfs:comment "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms." ; + foaf:homepage "http://www.brenda-enzymes.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "a.chang@tu-bs.de" ; + bioregistry.schema:example "0000590" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P5501" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^BTO:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/BTO:$1" . + +bioregistry.resource:bugbase.expt a bioregistry.schema:resource ; + rdfs:label "BugBase Expt" ; + rdfs:comment "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "288" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bugbase.expt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bugbase.expt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BUGBASE.EXPT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bugbase.expt:$1" . + +bioregistry.resource:bugbase.protocol a bioregistry.schema:resource ; + rdfs:label "BugBase Protocol" ; + rdfs:comment "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "67" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bugbase.protocol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BUGBASE.PROTOCOL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bugbase.protocol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bugbase.protocol:$1" . + +bioregistry.resource:bykdb a bioregistry.schema:resource ; + rdfs:label "Bacterial Tyrosine Kinase Database" ; + rdfs:comment "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "A0A009E7X8" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bykdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BYKDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bykdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bykdb:$1" . + +bioregistry.resource:cabri a bioregistry.schema:resource ; + rdfs:label "Common Access to Biological Resources and Information Project" ; + rdfs:comment "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "dsmz_mutz-id:ACC 291" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CABRI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cabri" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cabri" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CABRI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cabri:$1" . + +bioregistry.resource:cadsr a bioregistry.schema:resource ; + rdfs:label "Cancer Data Standards Registry and Repository" ; + rdfs:comment "The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3771992" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cadsr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cadsr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cadsr:$1" . + +bioregistry.resource:caloha a bioregistry.schema:resource ; + rdfs:label "CALIPHO Group Ontology of Human Anatomy" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo" . + +bioregistry.resource:cameo a bioregistry.schema:resource ; + rdfs:label "Continuous Automated Model Evaluation" ; + rdfs:comment "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2019-08-03_00000089_1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CAMEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cameo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cameo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9\\-_]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cameo:$1" . + +bioregistry.resource:caps a bioregistry.schema:resource ; + rdfs:label "CAPS-DB" ; + rdfs:comment "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "434" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "caps" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CAPS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "caps" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/caps:$1" . + +bioregistry.resource:caro a bioregistry.schema:resource ; + rdfs:label "Common Anatomy Reference Ontology" ; + rdfs:comment "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species" ; + foaf:homepage "https://github.com/obophenotype/caro/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/obophenotype/caro/raw/master/src/ontology/caro.owl" ; + bioregistry.schema:email "haendel@ohsu.edu" ; + bioregistry.schema:example "0000000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CARO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CARO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "caro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CARO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CARO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/caro/terms?iri=http://purl.obolibrary.org/obo/CARO_$1" . + +bioregistry.resource:cas a bioregistry.schema:resource ; + rdfs:label "CAS Chemical Registry" ; + rdfs:comment "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information." ; + foaf:homepage "http://www.cas.org/expertise/cascontent/registry/index.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "50-00-0" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CAS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P231" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CAS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d{1,7}\\-\\d{2}\\-\\d$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cas:$1" . + +bioregistry.resource:cath a bioregistry.schema:resource ; + rdfs:label "CATH Protein Structural Domain Superfamily" ; + rdfs:comment "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1.10.8.10" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cath" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CATH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cath" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cath:$1" . + +bioregistry.resource:cath.domain a bioregistry.schema:resource ; + rdfs:label "CATH domain" ; + rdfs:comment "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1cukA01" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CATH.DOMAIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cath.domain" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cath.domain" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cath.domain:$1" . + +bioregistry.resource:cath.superfamily a bioregistry.schema:resource ; + rdfs:label "CATH superfamily" ; + rdfs:comment "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1.10.10.200" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CATH.SUPERFAMILY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cath.superfamily" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cath.superfamily" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+(\\.\\d+(\\.\\d+(\\.\\d+)?)?)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cath.superfamily:$1" . + +bioregistry.resource:cattleqtldb a bioregistry.schema:resource ; + rdfs:label "Animal Genome Cattle QTL" ; + rdfs:comment "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4685" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CATTLEQTLDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cattleqtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cattleqtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cattleqtldb:$1" . + +bioregistry.resource:cazy a bioregistry.schema:resource ; + rdfs:label "Carbohydrate Active EnZYmes" ; + rdfs:comment "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features." ; + foaf:homepage "http://www.cazy.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GT10" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CAZY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CAZy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CAZY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cazy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cazy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cazy:$1" . + +bioregistry.resource:cba a bioregistry.schema:resource ; + rdfs:label "Chinese Biological Abstracts" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "375364" ; + bioregistry.schema:provider_formatter "https://europepmc.org/article/CBA/$1" . + +bioregistry.resource:cbioportal a bioregistry.schema:resource ; + rdfs:label "The cBioPortal for Cancer Genomics" ; + rdfs:comment "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "laml_tcga_pub" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cbioportal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cbioportal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-z0-9\\_]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cbioportal:$1" . + +bioregistry.resource:ccdc a bioregistry.schema:resource ; + rdfs:label "CCDC Number" ; + rdfs:comment "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1829126" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ccdc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d{6,7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ccdc:$1" . + +bioregistry.resource:ccds a bioregistry.schema:resource ; + rdfs:label "Consensus CDS" ; + rdfs:comment "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CCDS13573.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ccds" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ccds" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CCDS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CCDS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^CCDS\\d+\\.\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ccds:$1" . + +bioregistry.resource:cco a bioregistry.schema:resource ; + rdfs:label "Cell Cycle Ontology" ; + rdfs:comment "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process." ; + foaf:homepage "http://www.semantic-systems-biology.org/apo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "vladimir.n.mironov@gmail.com" ; + bioregistry.schema:example "0000003" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^CCO\\:\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/CCO:$1" . + +bioregistry.resource:cdao a bioregistry.schema:resource ; + rdfs:label "Comparative Data Analysis Ontology" ; + rdfs:comment "The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character." ; + foaf:homepage "https://github.com/evoinfo/cdao" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "balhoff@renci.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cdao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cdao/terms?iri=http://purl.obolibrary.org/obo/CDAO_$1" . + +bioregistry.resource:cdd a bioregistry.schema:resource ; + rdfs:label "Conserved Domain Database at NCBI" ; + rdfs:comment "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution." ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/cdd" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "cd00400" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cdd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cdd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^(cd)?\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cdd:$1" . + +bioregistry.resource:cdno a bioregistry.schema:resource ; + rdfs:label "Compositional Dietary Nutrition Ontology" ; + rdfs:comment "None" ; + foaf:homepage "https://github.com/Southern-Cross-Plant-Science/cdno" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "l.andres.hernandez.18@student.scu.edu.au" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDNO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cdno" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cdno/terms?iri=http://purl.obolibrary.org/obo/CDNO_$1" . + +bioregistry.resource:cdpd a bioregistry.schema:resource ; + rdfs:label "Canadian Drug Product Database" ; + rdfs:comment "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "63250" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cdpd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cdpd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CDPD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cdpd:$1" . + +bioregistry.resource:cellosaurus a bioregistry.schema:resource ; + rdfs:label "Cellosaurus" ; + rdfs:comment "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CVCL_0440" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CELLOSAURUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cellosaurus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3289" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cellosaurus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^CVCL_[A-Z0-9]{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cellosaurus:$1" . + +bioregistry.resource:ceph a bioregistry.schema:resource ; + rdfs:label "Cephalopod Ontology" ; + rdfs:comment "An anatomical and developmental ontology for cephalopods" ; + foaf:homepage "https://github.com/obophenotype/cephalopod-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/obophenotype/cephalopod-ontology/master/ceph.obo" ; + bioregistry.schema:email "cjmungall@lbl.gov" ; + bioregistry.schema:example "0000109" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ceph" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CEPH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CEPH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CEPH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ceph/terms?iri=http://purl.obolibrary.org/obo/CEPH_$1" . + +bioregistry.resource:cgd a bioregistry.schema:resource ; + rdfs:label "Candida Genome Database" ; + rdfs:comment "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products." ; + foaf:homepage "http://www.candidagenome.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CAL0003079" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cgd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cgd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^CAL\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cgd:$1" . + +bioregistry.resource:cgnc a bioregistry.schema:resource ; + rdfs:label "Chicken Gene Nomenclature Consortium" ; + rdfs:comment "None" ; + foaf:homepage "http://birdgenenames.org/cgnc/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10087" ; + bioregistry.schema:provider_formatter "http://birdgenenames.org/cgnc/GeneReport?id=$1" . + +bioregistry.resource:cgsc a bioregistry.schema:resource ; + rdfs:label "Coli Genetic Stock Center" ; + rdfs:comment "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature." ; + foaf:homepage "http://cgsc.biology.yale.edu/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "74" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CGSC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cgsc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cgsc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CGSC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cgsc:$1" . + +bioregistry.resource:charprot a bioregistry.schema:resource ; + rdfs:label "CharProt" ; + rdfs:comment "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CH_001923" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHARPROT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "charprot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "charprot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^CH_\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/charprot:$1" . + +bioregistry.resource:chebi a bioregistry.schema:resource ; + rdfs:label "Chemical Entities of Biological Interest" ; + rdfs:comment "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds." ; + foaf:homepage "http://www.ebi.ac.uk/chebi" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "amalik@ebi.ac.uk" ; + bioregistry.schema:example "24867" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chebi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chebi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chebi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P683" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^CHEBI:\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1" . + +bioregistry.resource:chembl.compound a bioregistry.schema:resource ; + rdfs:label "ChEMBL compound" ; + rdfs:comment "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature." ; + foaf:homepage "https://www.ebi.ac.uk/chembl" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CHEMBL465070" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEMBL.COMPOUND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P592" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chembl.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chembl.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:chembl ; + bioregistry.schema:pattern "^CHEMBL\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/chembl.compound:$1" . + +bioregistry.resource:chembl.target a bioregistry.schema:resource ; + rdfs:label "ChEMBL target" ; + rdfs:comment "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CHEMBL3467" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEMBL.TARGET" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chembl.target" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chembl.target" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ChEMBL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:part_of bioregistry.resource:chembl ; + bioregistry.schema:pattern "^CHEMBL\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/chembl.target:$1" . + +bioregistry.resource:chemdb a bioregistry.schema:resource ; + rdfs:label "ChemDB" ; + rdfs:comment "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3966782" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chemdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chemdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEMDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/chemdb:$1" . + +bioregistry.resource:chemidplus a bioregistry.schema:resource ; + rdfs:label "ChemIDplus" ; + rdfs:comment "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "57-27-2" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chemidplus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEMIDPLUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chemidplus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+\\-\\d+\\-\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/chemidplus:$1" . + +bioregistry.resource:cheminf a bioregistry.schema:resource ; + rdfs:label "Chemical Information Ontology" ; + rdfs:comment "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them." ; + foaf:homepage "https://github.com/semanticchemistry/semanticchemistry" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl" ; + bioregistry.schema:email "egon.willighagen@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cheminf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEMINF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEMINF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEMINF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http://purl.obolibrary.org/obo/CHEMINF_$1" . + +bioregistry.resource:chemspider a bioregistry.schema:resource ; + rdfs:label "ChemSpider" ; + rdfs:comment "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources." ; + foaf:homepage "https://www.chemspider.com/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "56586" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chemspider" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P661" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chemspider" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHEMSPIDER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/chemspider:$1" . + +bioregistry.resource:chickenqtldb a bioregistry.schema:resource ; + rdfs:label "Animal Genome Chicken QTL" ; + rdfs:comment "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "14362" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chickenqtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chickenqtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHICKENQTLDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/chickenqtldb:$1" . + +bioregistry.resource:chiro a bioregistry.schema:resource ; + rdfs:label "ChEBI Integrated Role Ontology" ; + rdfs:comment "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes." ; + foaf:homepage "https://github.com/obophenotype/chiro" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/chiro.obo" ; + bioregistry.schema:email "vasilevs@ohsu.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHIRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chiro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHIRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/chiro/terms?iri=http://purl.obolibrary.org/obo/CHIRO_$1" . + +bioregistry.resource:chmo a bioregistry.schema:resource ; + rdfs:label "Chemical Methods Ontology" ; + rdfs:comment "CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI)." ; + foaf:homepage "https://github.com/rsc-ontologies/rsc-cmo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "batchelorc@rsc.org" ; + bioregistry.schema:example "0002902" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chmo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CHMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/chmo/terms?iri=http://purl.obolibrary.org/obo/CHMO_$1" . + +bioregistry.resource:cido a bioregistry.schema:resource ; + rdfs:label "Coronavirus Infectious Disease Ontology" ; + rdfs:comment "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment." ; + foaf:homepage "https://github.com/cido-ontology/cido" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CIDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cido" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CIDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cido/terms?iri=http://purl.obolibrary.org/obo/CIDO_$1" . + +bioregistry.resource:cio a bioregistry.schema:resource ; + rdfs:label "Confidence Information Ontology" ; + rdfs:comment "An ontology to capture confidence information about annotations." ; + foaf:homepage "https://github.com/BgeeDB/confidence-information-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "bgee@sib.swiss" ; + bioregistry.schema:example "0000040" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cio" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cio/terms?iri=http://purl.obolibrary.org/obo/CIO_$1" . + +bioregistry.resource:citexplore a bioregistry.schema:resource ; + rdfs:label "CiteXplore" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C6155" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://europepmc.org/article/CTX/$1" . + +bioregistry.resource:cl a bioregistry.schema:resource ; + rdfs:label "Cell Ontology" ; + rdfs:comment "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi." ; + foaf:homepage "https://obophenotype.github.io/cell-ontology/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/obophenotype/cell-ontology/master/cl-full.obo" ; + bioregistry.schema:email "addiehl@buffalo.edu" ; + bioregistry.schema:example "0000062" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7963" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^CL:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/CL:$1" . + +bioregistry.resource:clao a bioregistry.schema:resource ; + rdfs:label "Collembola Anatomy Ontology" ; + rdfs:comment "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)." ; + foaf:homepage "https://github.com/luis-gonzalez-m/Collembola" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "lagonzalezmo@unal.edu.co" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/clao/terms?iri=http://purl.obolibrary.org/obo/CLAO_$1" . + +bioregistry.resource:classyfire a bioregistry.schema:resource ; + rdfs:label "ClassyFire" ; + rdfs:comment "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C0004828" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "classyfire" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^C[0-9]{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/classyfire:$1" . + +bioregistry.resource:cldb a bioregistry.schema:resource ; + rdfs:label "Cell Line Database" ; + rdfs:comment "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "cl3603" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^(cl|tum)\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cldb:$1" . + +bioregistry.resource:clingene a bioregistry.schema:resource ; + rdfs:label "ClinGen Allele Registry" ; + rdfs:comment "None" ; + foaf:homepage "https://reg.clinicalgenome.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CA981206459" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CAID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:provider_formatter "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1" . + +bioregistry.resource:clinicaltrials a bioregistry.schema:resource ; + rdfs:label "ClinicalTrials.gov" ; + rdfs:comment "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "NCT00222573" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinicaltrials" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinicaltrials" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLINICALTRIALS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^NCT\\d{8}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/clinicaltrials:$1" . + +bioregistry.resource:clinvar a bioregistry.schema:resource ; + rdfs:label "ClinVar Variant" ; + rdfs:comment "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "12345" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinvar" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ClinVar" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinvar" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/clinvar:$1" . + +bioregistry.resource:clinvar.record a bioregistry.schema:resource ; + rdfs:label "ClinVar Record" ; + rdfs:comment "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "RCV000033555.3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLINVAR.RECORD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinvar.record" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinvar.record" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^RCV\\d+(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/clinvar.record:$1" . + +bioregistry.resource:clinvar.submission a bioregistry.schema:resource ; + rdfs:label "ClinVar Submission" ; + rdfs:comment "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SCV000151292" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinvar.submission" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinvar.submission" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLINVAR.SUBMISSION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^SCV\\d+(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/clinvar.submission:$1" . + +bioregistry.resource:clinvar.submitter a bioregistry.schema:resource ; + rdfs:label "ClinVar Submitter" ; + rdfs:comment "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "26957" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clinvar.submitter" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/clinvar.submitter:$1" . + +bioregistry.resource:clo a bioregistry.schema:resource ; + rdfs:label "Cell Line Ontology" ; + rdfs:comment "The Cell Line Ontology (CLO) is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns." ; + foaf:homepage "http://www.clo-ontology.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "siiraa@umich.edu" ; + bioregistry.schema:example "0000091" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2158" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/clo/terms?iri=http://purl.obolibrary.org/obo/CLO_$1" . + +bioregistry.resource:clyh a bioregistry.schema:resource ; + rdfs:label "Clytia hemisphaerica Development and Anatomy Ontology" ; + rdfs:comment "Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica." ; + foaf:homepage "https://github.com/EBISPOT/clyh_ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "lucas.leclere@obs-vlfr.fr" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "clyh" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLYH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CLYH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/clyh/terms?iri=http://purl.obolibrary.org/obo/CLYH_$1" . + +bioregistry.resource:cmf a bioregistry.schema:resource ; + rdfs:label "CranioMaxilloFacial ontology" ; + rdfs:comment "None" ; + foaf:homepage "https://code.google.com/p/craniomaxillofacial-ontology/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "engelsta@ohsu.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CMF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CMF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] . + +bioregistry.resource:cmo a bioregistry.schema:resource ; + rdfs:label "Clinical measurement ontology" ; + rdfs:comment "Morphological and physiological measurement records generated from clinical and model organism research and health programs." ; + foaf:homepage "http://rgd.mcw.edu/rgdweb/ontology/search.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "shimoyama@mcw.edu" ; + bioregistry.schema:example "0001350" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cmo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cmo/terms?iri=http://purl.obolibrary.org/obo/CMO_$1" . + +bioregistry.resource:cmpo a bioregistry.schema:resource ; + rdfs:label "Cellular Microscopy Phenotype Ontology" ; + rdfs:comment "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations." ; + foaf:homepage "http://www.ebi.ac.uk/cmpo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jupp@ebi.ac.uk" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cmpo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CMPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cmpo/terms?iri=http://purl.obolibrary.org/obo/CMPO_$1" . + +bioregistry.resource:co_320 a bioregistry.schema:resource ; + rdfs:label "Rice ontology" ; + rdfs:comment "Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_320/Rice" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_320" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_320/terms?iri=http://purl.obolibrary.org/obo/CO_320_$1" . + +bioregistry.resource:co_321 a bioregistry.schema:resource ; + rdfs:label "Wheat ontology" ; + rdfs:comment "Sept 2020" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_321/Wheat" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_321" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_321/terms?iri=http://purl.obolibrary.org/obo/CO_321_$1" . + + a bioregistry.schema:resource ; + rdfs:label "Wheat ontology" ; + rdfs:comment "T3 Wheat traits" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_321:ROOT/Wheat" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_321:root" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_321:root/terms?iri=http://purl.obolibrary.org/obo/CO_321:ROOT_$1" . + +bioregistry.resource:co_322 a bioregistry.schema:resource ; + rdfs:label "Maize ontology" ; + rdfs:comment "Maize Trait Dictionary in template 5 - CIMMYT- September 2016" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_322/Maize" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_322" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_322/terms?iri=http://purl.obolibrary.org/obo/CO_322_$1" . + +bioregistry.resource:co_323 a bioregistry.schema:resource ; + rdfs:label "Barley ontology" ; + rdfs:comment "ICARDA - TDv5 - Sept 2018" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_323/Barley" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_323" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_323/terms?iri=http://purl.obolibrary.org/obo/CO_323_$1" . + +bioregistry.resource:co_324 a bioregistry.schema:resource ; + rdfs:label "Sorghum ontology" ; + rdfs:comment "Sorghum TDv5 March 2021" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_324/Sorghum" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_324" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_324/terms?iri=http://purl.obolibrary.org/obo/CO_324_$1" . + +bioregistry.resource:co_325 a bioregistry.schema:resource ; + rdfs:label "Banana ontology" ; + rdfs:comment "Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_325/Banana" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_325" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_325/terms?iri=http://purl.obolibrary.org/obo/CO_325_$1" . + +bioregistry.resource:co_327 a bioregistry.schema:resource ; + rdfs:label "Pearl millet ontology" ; + rdfs:comment "Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_327/Pearl%20millet" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_327" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_327/terms?iri=http://purl.obolibrary.org/obo/CO_327_$1" . + +bioregistry.resource:co_330 a bioregistry.schema:resource ; + rdfs:label "Potato ontology" ; + rdfs:comment "CIP - potato ontology - november 2020" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_330/Potato" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_330" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_330/terms?iri=http://purl.obolibrary.org/obo/CO_330_$1" . + +bioregistry.resource:co_331 a bioregistry.schema:resource ; + rdfs:label "Sweet Potato ontology" ; + rdfs:comment "Sweet Potato Trait Dictionary in template v5 - CIP - November 2019" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_331/Sweet%20Potato" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_331" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_331/terms?iri=http://purl.obolibrary.org/obo/CO_331_$1" . + +bioregistry.resource:co_333 a bioregistry.schema:resource ; + rdfs:label "Beet Ontology ontology" ; + rdfs:comment "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017." ; + foaf:homepage "http://www.cropontology.org/ontology/CO_333/Beet%20Ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_333" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_333/terms?iri=http://purl.obolibrary.org/obo/CO_333_$1" . + +bioregistry.resource:co_334 a bioregistry.schema:resource ; + rdfs:label "Cassava ontology" ; + rdfs:comment "Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_334/Cassava" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_334" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_334/terms?iri=http://purl.obolibrary.org/obo/CO_334_$1" . + +bioregistry.resource:co_335 a bioregistry.schema:resource ; + rdfs:label "Common Bean ontology" ; + rdfs:comment "CIAT Common bean trait dictionary - version August 2014" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_335/Common%20Bean" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_335" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_335/terms?iri=http://purl.obolibrary.org/obo/CO_335_$1" . + +bioregistry.resource:co_336 a bioregistry.schema:resource ; + rdfs:label "Soybean ontology" ; + rdfs:comment "Soybean Trait Dictionary in template v5 - IITA - July 2015" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_336/Soybean" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_336" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_336/terms?iri=http://purl.obolibrary.org/obo/CO_336_$1" . + +bioregistry.resource:co_337 a bioregistry.schema:resource ; + rdfs:label "Groundnut ontology" ; + rdfs:comment "Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS/USDA-ARS - Sept 2019" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_337/Groundnut" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_337" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_337/terms?iri=http://purl.obolibrary.org/obo/CO_337_$1" . + +bioregistry.resource:co_338 a bioregistry.schema:resource ; + rdfs:label "Chickpea ontology" ; + rdfs:comment "Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_338/Chickpea" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_338" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_338/terms?iri=http://purl.obolibrary.org/obo/CO_338_$1" . + +bioregistry.resource:co_339 a bioregistry.schema:resource ; + rdfs:label "Lentil ontology" ; + rdfs:comment "Lentil Trait Dictionary in template v5 - ICARDA - July 2015" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_339/Lentil" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_339" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_339/terms?iri=http://purl.obolibrary.org/obo/CO_339_$1" . + +bioregistry.resource:co_340 a bioregistry.schema:resource ; + rdfs:label "Cowpea ontology" ; + rdfs:comment "Cowpea Trait Dictionary in template v5 - IITA - August 2015" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_340/Cowpea" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_340" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_340/terms?iri=http://purl.obolibrary.org/obo/CO_340_$1" . + +bioregistry.resource:co_341 a bioregistry.schema:resource ; + rdfs:label "Pigeonpea ontology" ; + rdfs:comment "Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_341/Pigeonpea" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_341" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_341/terms?iri=http://purl.obolibrary.org/obo/CO_341_$1" . + +bioregistry.resource:co_343 a bioregistry.schema:resource ; + rdfs:label "Yam ontology" ; + rdfs:comment "version 2019 - pvs" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_343/Yam" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_343" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_343/terms?iri=http://purl.obolibrary.org/obo/CO_343_$1" . + +bioregistry.resource:co_345 a bioregistry.schema:resource ; + rdfs:label "Brachiaria ontology" ; + rdfs:comment "Brachiaria (forages) ontology TD v5 - Version Oct 2016" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_345/Brachiaria" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_345" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_345/terms?iri=http://purl.obolibrary.org/obo/CO_345_$1" . + +bioregistry.resource:co_346 a bioregistry.schema:resource ; + rdfs:label "Mungbean ontology" ; + rdfs:comment "oct 2016" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_346/Mungbean" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_346" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_346/terms?iri=http://purl.obolibrary.org/obo/CO_346_$1" . + +bioregistry.resource:co_347 a bioregistry.schema:resource ; + rdfs:label "Castor bean ontology" ; + rdfs:comment "March 2017 version " ; + foaf:homepage "http://www.cropontology.org/ontology/CO_347/Castor%20bean" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_347" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_347/terms?iri=http://purl.obolibrary.org/obo/CO_347_$1" . + +bioregistry.resource:co_348 a bioregistry.schema:resource ; + rdfs:label "Brassica ontology" ; + rdfs:comment "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France)." ; + foaf:homepage "http://www.cropontology.org/ontology/CO_348/Brassica" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_348" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_348/terms?iri=http://purl.obolibrary.org/obo/CO_348_$1" . + +bioregistry.resource:co_350 a bioregistry.schema:resource ; + rdfs:label "Oat ontology" ; + rdfs:comment "Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_350/Oat" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_350" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_350/terms?iri=http://purl.obolibrary.org/obo/CO_350_$1" . + +bioregistry.resource:co_356 a bioregistry.schema:resource ; + rdfs:label "Vitis ontology" ; + rdfs:comment "Grape Ontology including OIV and bioversity descriptors. INRAE Jan 2021" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_356/Vitis" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_356" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_356/terms?iri=http://purl.obolibrary.org/obo/CO_356_$1" . + +bioregistry.resource:co_357 a bioregistry.schema:resource ; + rdfs:label "Woody Plant Ontology ontology" ; + rdfs:comment "This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE." ; + foaf:homepage "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_357" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_357/terms?iri=http://purl.obolibrary.org/obo/CO_357_$1" . + +bioregistry.resource:co_358 a bioregistry.schema:resource ; + rdfs:label "Cotton ontology" ; + rdfs:comment "Cotton ontology from CottonGen database - June 2019" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_358/Cotton" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_358" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_358/terms?iri=http://purl.obolibrary.org/obo/CO_358_$1" . + +bioregistry.resource:co_359 a bioregistry.schema:resource ; + rdfs:label "Sunflower ontology" ; + rdfs:comment "December 2019" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_359/Sunflower" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_359" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_359/terms?iri=http://purl.obolibrary.org/obo/CO_359_$1" . + +bioregistry.resource:co_360 a bioregistry.schema:resource ; + rdfs:label "Sugar Kelp trait ontology" ; + rdfs:comment "Sugar Kelp trait ontology" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_360" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_360/terms?iri=http://purl.obolibrary.org/obo/CO_360_$1" . + +bioregistry.resource:co_365 a bioregistry.schema:resource ; + rdfs:label "Fababean ontology" ; + rdfs:comment "developed by ICARDA - Dec 2018" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_365/Fababean" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_365" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_365/terms?iri=http://purl.obolibrary.org/obo/CO_365_$1" . + +bioregistry.resource:co_366 a bioregistry.schema:resource ; + rdfs:label "Bambara groundnut ontology" ; + rdfs:comment "version Dec 2019" ; + foaf:homepage "http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "helpdesk@cropontology-curationtool.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "co_366" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/co_366/terms?iri=http://purl.obolibrary.org/obo/CO_366_$1" . + +bioregistry.resource:cob a bioregistry.schema:resource ; + rdfs:label "Core Ontology for Biology and Biomedicine" ; + rdfs:comment "COB brings together key terms from a wide range of OBO projects to improve interoperability." ; + foaf:homepage "https://github.com/OBOFoundry/COB" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "bpeters@lji.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cob" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "COB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "COB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cob/terms?iri=http://purl.obolibrary.org/obo/COB_$1" . + +bioregistry.resource:cohd a bioregistry.schema:resource ; + rdfs:label "MIMIC III Database" ; + rdfs:comment "None" ; + foaf:homepage "https://github.com/MIT-LCP/mimic-omop" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:combine.specifications a bioregistry.schema:resource ; + rdfs:label "COMBINE specifications" ; + rdfs:comment "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "sbgn.er.level-1.version-1.2" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "COMBINE.SPECIFICATIONS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "combine.specifications" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "combine.specifications" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+(\\-|\\.|\\w)*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/combine.specifications:$1" . + +bioregistry.resource:come a bioregistry.schema:resource ; + rdfs:label "The Bioinorganic Motif Database" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MOL000160" ; + bioregistry.schema:provider_formatter "https://www.flymine.org/come/entry?gn=$1" . + +bioregistry.resource:complexportal a bioregistry.schema:resource ; + rdfs:label "Complex Portal database of macromolecular complexes" ; + rdfs:comment "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases." ; + foaf:homepage "https://www.ebi.ac.uk/complexportal" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CPX-263" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7718" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "complexportal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "complexportal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ComplexPortal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ComplexPortal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "COMPLEXPORTAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^CPX-[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/complexportal:$1" . + +bioregistry.resource:comptox a bioregistry.schema:resource ; + rdfs:label "CompTox Chemistry Dashboard" ; + rdfs:comment "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DTXSID2021028" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "comptox" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "comptox" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "COMPTOX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^DTXSID\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/comptox:$1" . + +bioregistry.resource:compulyeast a bioregistry.schema:resource ; + rdfs:label "Compluyeast-2D-DB" ; + rdfs:comment "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "O08709" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "compulyeast" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "COMPULYEAST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "compulyeast" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/compulyeast:$1" . + +bioregistry.resource:conoserver a bioregistry.schema:resource ; + rdfs:label "ConoServer" ; + rdfs:comment "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2639" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CONOSERVER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "conoserver" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "conoserver" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ConoServer" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/conoserver:$1" . + +bioregistry.resource:conso a bioregistry.schema:resource ; + rdfs:label "Curation of Neurodegeneration Supporting Ontology" ; + rdfs:comment "None" ; + foaf:homepage "https://pharmacome.github.io/conso/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CONSO00010" ; + bioregistry.schema:pattern "^CONSO\\d{5}$" ; + bioregistry.schema:provider_formatter "https://pharmacome.github.io/conso/$1" . + +bioregistry.resource:coriell a bioregistry.schema:resource ; + rdfs:label "Coriell Institute for Medical Research" ; + rdfs:comment "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world." ; + foaf:homepage "http://ccr.coriell.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GM17027" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CORIELL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "coriell" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "coriell" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Coriell" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z]{2}\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/coriell:$1" . + +bioregistry.resource:corum a bioregistry.schema:resource ; + rdfs:label "CORUM - the Comprehensive Resource of Mammalian protein complexes" ; + rdfs:comment "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded." ; + foaf:homepage "https://mips.helmholtz-muenchen.de/corum/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "100" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CORUM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "corum" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "corum" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CORUM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CORUM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/corum:$1" . + +bioregistry.resource:cosmic a bioregistry.schema:resource ; + rdfs:label "COSMIC Gene" ; + rdfs:comment "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BRAF" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cosmic" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "COSMIC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cosmic" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cosmic:$1" . + +bioregistry.resource:covid19 a bioregistry.schema:resource ; + rdfs:label "COVID-19 Ontology" ; + rdfs:comment "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SFB_COVID19_MW286762" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "COVID-19" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "covid19" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+_COVID19_[-\\w]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/covid19:$1" . + +bioregistry.resource:covoc a bioregistry.schema:resource ; + rdfs:label "CoVoc Coronavirus Vocabulary" ; + rdfs:comment "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more." ; + foaf:homepage "https://github.com/EBISPOT/covoc" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "covoc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/covoc/terms?iri=http://purl.obolibrary.org/obo/COVOC_$1" . + +bioregistry.resource:cp a bioregistry.schema:resource ; + rdfs:label "Cellular Phenotypes" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:cpc a bioregistry.schema:resource ; + rdfs:label "Cooperative Patent Classification" ; + rdfs:comment "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "A01M1/026" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cpc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CPC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cpc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cpc:$1" . + +bioregistry.resource:crisprdb a bioregistry.schema:resource ; + rdfs:label "CRISPRdb" ; + rdfs:comment "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "551115" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "crisprdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "crisprdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CRISPRDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/crisprdb:$1" . + +bioregistry.resource:cro a bioregistry.schema:resource ; + rdfs:label "Contributor Role Ontology" ; + rdfs:comment "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability." ; + foaf:homepage "https://github.com/data2health/contributor-role-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/data2health/contributor-role-ontology/master/cro.obo" ; + bioregistry.schema:email "whimar@ohsu.edu" ; + bioregistry.schema:example "0000038" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_$1" . + +bioregistry.resource:cryoem a bioregistry.schema:resource ; + rdfs:label "Cryo Electron Microscopy ontology" ; + rdfs:comment "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles" ; + foaf:homepage "http://scipion.i2pc.es/ontology/cryoem" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "isanchez@cnb.csic.es" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CRYOEM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cryoem" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cryoem/terms?iri=http://purl.obolibrary.org/obo/CRYOEM_$1" . + +bioregistry.resource:cryptodb a bioregistry.schema:resource ; + rdfs:label "CryptoDB" ; + rdfs:comment "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "cgd7_230" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cryptodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cryptodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CRYPTODB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cryptodb:$1" . + +bioregistry.resource:csa a bioregistry.schema:resource ; + rdfs:label "Catalytic Site Atlas" ; + rdfs:comment "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1a05" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "csa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "csa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CSA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[0-9][A-Za-z0-9]{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/csa:$1" . + +bioregistry.resource:csd a bioregistry.schema:resource ; + rdfs:label "Cambridge Structural Database" ; + rdfs:comment "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PELNAW" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "csd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z]{6}(\\d{2})?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/csd:$1" . + +bioregistry.resource:csp a bioregistry.schema:resource ; + rdfs:label "CRISP Thesaurus" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2004-2820" . + +bioregistry.resource:cst a bioregistry.schema:resource ; + rdfs:label "Cancer Staging Terms" ; + rdfs:comment "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Akt_PKB" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cst" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cst" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^[A-Za-z0-9_-]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cst:$1" . + +bioregistry.resource:cst.ab a bioregistry.schema:resource ; + rdfs:label "Cell Signaling Technology Antibody" ; + rdfs:comment "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3305" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CST.AB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cst.ab" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cst.ab" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cst.ab:$1" . + +bioregistry.resource:ctd.chemical a bioregistry.schema:resource ; + rdfs:label "CTD Chemical" ; + rdfs:comment "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "D001151" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ctd.chemical" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ctd.chemical" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTD.CHEMICAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:part_of bioregistry.resource:ctd ; + bioregistry.schema:pattern "^[CD]\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ctd.chemical:$1" ; + bioregistry.schema:provides bioregistry.resource:mesh . + +bioregistry.resource:ctd.disease a bioregistry.schema:resource ; + rdfs:label "CTD Disease" ; + rdfs:comment "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "D053716" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTD.DISEASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ctd.disease" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ctd.disease" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:ctd ; + bioregistry.schema:pattern "^D\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ctd.disease:$1" ; + bioregistry.schema:provides bioregistry.resource:mesh . + +bioregistry.resource:ctd.gene a bioregistry.schema:resource ; + rdfs:label "CTD Gene" ; + rdfs:comment "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "101" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ctd.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTD.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ctd.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:ctd ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ctd.gene:$1" ; + bioregistry.schema:provides bioregistry.resource:ncbigene . + +bioregistry.resource:cteno a bioregistry.schema:resource ; + rdfs:label "Ctenophore Ontology" ; + rdfs:comment "An anatomical and developmental ontology for ctenophores (Comb Jellies)" ; + foaf:homepage "https://github.com/obophenotype/ctenophore-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/obophenotype/ctenophore-ontology/master/cteno.obo" ; + bioregistry.schema:email "cjmungall@lbl.gov" ; + bioregistry.schema:example "0000047" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cteno" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cteno/terms?iri=http://purl.obolibrary.org/obo/CTENO_$1" . + +bioregistry.resource:cto a bioregistry.schema:resource ; + rdfs:label "CTO: Core Ontology of Clinical Trials" ; + rdfs:comment "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials." ; + foaf:homepage "https://github.com/ClinicalTrialOntology/CTO/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "alpha.tom.kodamullil@scai.fraunhofer.de" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cto/terms?iri=http://purl.obolibrary.org/obo/CTO_$1" . + +bioregistry.resource:cubedb a bioregistry.schema:resource ; + rdfs:label "Cube db" ; + rdfs:comment "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AKR" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CUBEDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cubedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cubedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Za-z_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cubedb:$1" . + +bioregistry.resource:cvdo a bioregistry.schema:resource ; + rdfs:label "Cardiovascular Disease Ontology" ; + rdfs:comment "An ontology to describe entities related to cardiovascular diseases" ; + foaf:homepage "https://github.com/OpenLHS/CVDO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "paul.fabry@usherbrooke.ca" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CVDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CVDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CVDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cvdo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/cvdo/terms?iri=http://purl.obolibrary.org/obo/CVDO_$1" . + +bioregistry.resource:d1id a bioregistry.schema:resource ; + rdfs:label "DataONE" ; + rdfs:comment "DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "00030692-0FE1-4A1B-955E-A2E55D659267" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "d1id" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "d1id" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "D1ID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "\\S+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/d1id:$1" . + +bioregistry.resource:dailymed a bioregistry.schema:resource ; + rdfs:label "DailyMed" ; + rdfs:comment "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "973a9333-fec7-46dd-8eb5-25738f06ee54" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dailymed" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DAILYMED" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dailymed" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z0-9-]+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dailymed:$1" . + +bioregistry.resource:dandi a bioregistry.schema:resource ; + rdfs:label "DANDI: Distributed Archives for Neurophysiology Data Integration" ; + rdfs:comment """DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable). +DANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data. +These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "000017" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dandi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d{6}(/\\d+\\.\\d+\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dandi:$1" . + +bioregistry.resource:darc a bioregistry.schema:resource ; + rdfs:label "Database of Aligned Ribosomal Complexes" ; + rdfs:comment "DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1250" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "darc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "darc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DARC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/darc:$1" . + +bioregistry.resource:dashr a bioregistry.schema:resource ; + rdfs:label "Database of small human noncoding RNAs" ; + rdfs:comment "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "hsa-mir-200a" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dashr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dashr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DASHR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dashr:$1" . + +bioregistry.resource:dashr.expression a bioregistry.schema:resource ; + rdfs:label "DASHR expression" ; + rdfs:comment "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "hsa-mir-200a" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dashr.expression" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dashr.expression" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DASHR.EXPRESSION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dashr.expression:$1" . + +bioregistry.resource:datanator.gene a bioregistry.schema:resource ; + rdfs:label "Datanator Gene" ; + rdfs:comment "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "K00973" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "datanator.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:datanator ; + bioregistry.schema:pattern "^K[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/datanator.gene:$1" . + +bioregistry.resource:datanator.metabolite a bioregistry.schema:resource ; + rdfs:label "Datanator Metabolite" ; + rdfs:comment "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "OUYCCCASQSFEME-MRVPVSSYSA-N" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "datanator.metabolite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:datanator ; + bioregistry.schema:pattern "^[A-Z\\-]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/datanator.metabolite:$1" . + +bioregistry.resource:datf a bioregistry.schema:resource ; + rdfs:label "DATF" ; + rdfs:comment "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:example "AT1G01030.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DATF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "datf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "datf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^AT[1-5]G\\d{5}(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/datf:$1" . + +bioregistry.resource:dbd a bioregistry.schema:resource ; + rdfs:label "Transcription Factor Database" ; + rdfs:comment "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0045310" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DBD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dbd:$1" . + +bioregistry.resource:dbest a bioregistry.schema:resource ; + rdfs:label "EST database maintained at the NCBI." ; + rdfs:comment "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms." ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/genbank/dbest" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BP100000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbest" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbEST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DBEST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbest" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([A-Z]+)?\\d+(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dbest:$1" . + +bioregistry.resource:dbg2introns a bioregistry.schema:resource ; + rdfs:label "DBG2 Introns" ; + rdfs:comment "The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Cu.me.I1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbg2introns" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbg2introns" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DBG2INTRONS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dbg2introns:$1" . + +bioregistry.resource:dbgap a bioregistry.schema:resource ; + rdfs:label "Database of Genotypes and Phenotypes" ; + rdfs:comment "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "phs000768.v2.p1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbgap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbgap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DBGAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^phs[0-9]{6}(.v\\d+.p\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dbgap:$1" . + +bioregistry.resource:dbprobe a bioregistry.schema:resource ; 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+ bioregistry.schema:hasMetaidentifier "dbprobe" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dbprobe:$1" . + +bioregistry.resource:dbsnp a bioregistry.schema:resource ; + rdfs:label "NCBI dbSNP" ; + rdfs:comment "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms." ; + foaf:homepage "http://www.ncbi.nlm.nih.gov/projects/SNP" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "rs121909098" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbSNP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbSNP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbsnp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbSNP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbSNP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dbsnp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^rs\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dbsnp:$1" . + +bioregistry.resource:dc a bioregistry.schema:resource ; + rdfs:label "Disease Class" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo" ; 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+ bioregistry.schema:hasMetaidentifier "DDANAT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DDANAT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ddanat" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DDANAT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ddanat/terms?iri=http://purl.obolibrary.org/obo/DDANAT_$1" . + +bioregistry.resource:ddpheno a bioregistry.schema:resource ; + rdfs:label "Dictyostelium discoideum phenotype ontology" ; + rdfs:comment "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum." ; + foaf:homepage "http://dictybase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo" ; + bioregistry.schema:email "pfey@northwestern.edu" ; + bioregistry.schema:example "0001417" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DDPHENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ddpheno" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DDPHENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DDPHENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_$1" . + +bioregistry.resource:degradome a bioregistry.schema:resource ; + rdfs:label "Degradome Database" ; + rdfs:comment "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Ax1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "degradome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DEGRADOME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "degradome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[AMCST][0-9x][0-9]$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/degradome:$1" . + +bioregistry.resource:depod a bioregistry.schema:resource ; + rdfs:label "Human Dephosphorylation Database" ; + rdfs:comment "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PTPN1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DEPOD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "depod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "depod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DEPOD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/depod:$1" ; + bioregistry.schema:provides bioregistry.resource:hgnc.symbol . + +bioregistry.resource:dermo a bioregistry.schema:resource ; + rdfs:label "Human Dermatological Disease Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DERMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:dev.ga4ghdos a bioregistry.schema:resource ; + rdfs:label "Development Data Object Service" ; + rdfs:comment "Assists in resolving data across cloud resources." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DEV.GA4GHDOS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dev.ga4ghdos" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dev.ga4ghdos" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-zA-Z0-9\\-:#\\.]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dev.ga4ghdos:$1" . + +bioregistry.resource:dicom a bioregistry.schema:resource ; + rdfs:label "DICOM Controlled Terminology" ; + rdfs:comment "DICOM Controlled Terminology" ; + foaf:homepage "http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "dclunie@dclunie.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DCM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dicom" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/dicom/terms?iri=http://purl.obolibrary.org/obo/DICOM_$1" . + +bioregistry.resource:dictybase.est a bioregistry.schema:resource ; + rdfs:label "dictyBase Expressed Sequence Tag" ; + rdfs:comment "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DDB0016567" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dictybase.est" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dictybase.est" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DICTYBASE.EST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:part_of bioregistry.resource:dictybase ; + bioregistry.schema:pattern "^DDB\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dictybase.est:$1" . + +bioregistry.resource:dictybase.gene a bioregistry.schema:resource ; + rdfs:label "Dictybase Gene" ; + rdfs:comment "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DDB_G0267522" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dictybase.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dictybase.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DICTYBASE.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:part_of bioregistry.resource:dictybase ; + bioregistry.schema:pattern "^DDB_G\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dictybase.gene:$1" . + +bioregistry.resource:did a bioregistry.schema:resource ; + rdfs:label "Decentralized Identifier" ; + rdfs:comment "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "sov:WRfXPg8dantKVubE3HX8pw" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "did" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "did" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^did:[a-z0-9]+:[A-Za-z0-9.\\-:]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/DID:$1" . + +bioregistry.resource:dideo a bioregistry.schema:resource ; + rdfs:label "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" ; + rdfs:comment "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology" ; + foaf:homepage "https://github.com/DIDEO/DIDEO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mbrochhausen@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dideo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DIDEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DIDEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DIDEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_$1" . + +bioregistry.resource:dip a bioregistry.schema:resource ; + rdfs:label "Database of Interacting Proteins" ; + rdfs:comment "The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DIP-743N" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dip" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dip" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DIP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DIP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^DIP(\\:)?\\-\\d{1,}[ENXS]$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dip:$1" . + +bioregistry.resource:diseasesdb a bioregistry.schema:resource ; 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+ bioregistry.schema:hasMetaidentifier "disprot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DISPROT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^DP\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/disprot:$1" . + +bioregistry.resource:disprot.region a bioregistry.schema:resource ; + rdfs:label "DisProt region" ; + rdfs:comment "DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DP00086r013" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "disprot.region" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^DP\\d{5}r\\d{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/disprot.region:$1" . + +bioregistry.resource:dlxb a bioregistry.schema:resource ; + rdfs:label "Linear double stranded DNA sequences" ; + rdfs:comment "DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "6VDC956" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dlxb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:dlx ; + bioregistry.schema:pattern "^[A-Z0-9]{6,7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dlxb:$1" . + +bioregistry.resource:dlxc a bioregistry.schema:resource ; + rdfs:label "Circular double stranded DNA sequences composed" ; + rdfs:comment "DOULIX lab-tested standard biological parts, in this case, full length constructs." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "M77F7JM" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dlxc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:dlx ; + bioregistry.schema:pattern "^[A-Z0-9]{6,7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dlxc:$1" . + +bioregistry.resource:doi a bioregistry.schema:resource ; + rdfs:label "Digital Object Identifier" ; + rdfs:comment "The Digital Object Identifier System is for identifying content objects in the digital environment." ; + foaf:homepage "http://dx.doi.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10.1038/nbt1156" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^(doi\\:)?\\d{2}\\.\\d{4}.*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/doi:$1" . + +bioregistry.resource:doid a bioregistry.schema:resource ; + rdfs:label "Human Disease Ontology" ; + rdfs:comment "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts." ; + foaf:homepage "http://www.disease-ontology.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo" ; + bioregistry.schema:email "lynn.schriml@gmail.com" ; + bioregistry.schema:example "0110974" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P699" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^DOID:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/DOID:$1" . + +bioregistry.resource:dommino a bioregistry.schema:resource ; + rdfs:label "Database of Macromolecular Interactions" ; + rdfs:comment "DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides." ; + foaf:homepage "http://korkinlab.org/dommino" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2GC4" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOMMINO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dommino" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dommino" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9][A-Za-z0-9]{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dommino:$1" . + +bioregistry.resource:door a bioregistry.schema:resource ; + rdfs:label "Database for Prokaryotic Operons" ; + rdfs:comment "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1398574" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "door" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "door" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/door:$1" . + +bioregistry.resource:doqcs.model a bioregistry.schema:resource ; + rdfs:label "Database of Quantitative Cellular Signaling: Model" ; + rdfs:comment "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "57" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doqcs.model" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOQCS.MODEL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doqcs.model" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:doqcs ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/doqcs.model:$1" . + +bioregistry.resource:doqcs.pathway a bioregistry.schema:resource ; + rdfs:label "Database of Quantitative Cellular Signaling: Pathway" ; + rdfs:comment "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "131" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doqcs.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DOQCS.PATHWAY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "doqcs.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:doqcs ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/doqcs.pathway:$1" . + +bioregistry.resource:dpo a bioregistry.schema:resource ; + rdfs:label "Drosophila Phenotype Ontology" ; + rdfs:comment "An ontology for the description of Drosophila melanogaster phenotypes." ; + foaf:homepage "http://purl.obolibrary.org/obo/fbcv" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cp390@cam.ac.uk" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBcv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dpo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/dpo/terms?iri=http://purl.obolibrary.org/obo/DPO_$1" . + +bioregistry.resource:dpv a bioregistry.schema:resource ; + rdfs:label "Description of Plant Viruses" ; + rdfs:comment "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "100" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dpv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dpv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DPV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dpv:$1" . + +bioregistry.resource:dragondb.allele a bioregistry.schema:resource ; + rdfs:label "DragonDB Allele" ; + rdfs:comment "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "cho" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dragondb.allele" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRAGONDB.ALLELE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dragondb.allele" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:dragondb ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dragondb.allele:$1" . + +bioregistry.resource:dragondb.dna a bioregistry.schema:resource ; + rdfs:label "DragonDB DNA" ; + rdfs:comment "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3hB06" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRAGONDB.DNA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dragondb.dna" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dragondb.dna" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:dragondb ; + bioregistry.schema:pattern "^\\d\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dragondb.dna:$1" . + +bioregistry.resource:dragondb.locus a bioregistry.schema:resource ; + rdfs:label "DragonDB Locus" ; + rdfs:comment "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DEF" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dragondb.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dragondb.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRAGONDB.LOCUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:part_of bioregistry.resource:dragondb ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dragondb.locus:$1" . + +bioregistry.resource:dragondb.protein a bioregistry.schema:resource ; + rdfs:label "DragonDB Protein" ; + rdfs:comment "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AMDEFA" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dragondb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dragondb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRAGONDB.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:part_of bioregistry.resource:dragondb ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/dragondb.protein:$1" . + +bioregistry.resource:dron a bioregistry.schema:resource ; + rdfs:label "The Drug Ontology" ; + rdfs:comment "An ontology to support comparative effectiveness researchers studying claims data." ; + foaf:homepage "https://bitbucket.org/uamsdbmi/dron.git" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "hoganwr@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dron" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/dron/terms?iri=http://purl.obolibrary.org/obo/DRON_$1" . + +bioregistry.resource:drsc a bioregistry.schema:resource ; + rdfs:label "Drosophila RNAi Screening Center" ; + rdfs:comment "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DRSC05221" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRSC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "drsc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "drsc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^DRSC\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/drsc:$1" . + +bioregistry.resource:drugbank.salt a bioregistry.schema:resource ; + rdfs:label "DrugBank Salts" ; + rdfs:comment "None" ; + foaf:homepage "http://www.drugbank.ca" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DBSALT001211" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRUGBANK.TARGET" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:part_of bioregistry.resource:drugbank ; + bioregistry.schema:pattern "^DBSALT\\d{6}$" ; + bioregistry.schema:provider_formatter "https://go.drugbank.com/salts/$1" . + +bioregistry.resource:drugbankv4.target a bioregistry.schema:resource ; + rdfs:label "DrugBank Target v4" ; + rdfs:comment "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BE0000048" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "drugbankv4.target" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DRUGBANKV4.TARGET" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "drugbankv4.target" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:drugbank ; + bioregistry.schema:pattern "^BE\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/drugbankv4.target:$1" . + +bioregistry.resource:drugcentral a bioregistry.schema:resource ; + rdfs:label "Drug Central" ; + rdfs:comment "None" ; + foaf:homepage "http://drugcentral.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "307" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DrugCentral" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DrugCentral" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:provider_formatter "http://drugcentral.org/drugcard/$1" . + +bioregistry.resource:dto a bioregistry.schema:resource ; + rdfs:label "Drug Target Ontology" ; + rdfs:comment "None" ; + foaf:homepage "https://github.com/DrugTargetOntology/DTO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:duo a bioregistry.schema:resource ; + rdfs:label "Data Use Ontology" ; + rdfs:comment "DUO is an ontology which represent data use conditions." ; + foaf:homepage "https://github.com/EBISPOT/DUO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mcourtot@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "duo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DUO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DUO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DUO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/duo/terms?iri=http://purl.obolibrary.org/obo/DUO_$1" . + +bioregistry.resource:ecacc a bioregistry.schema:resource ; + rdfs:label "European Collection of Authenticated Cell Culture" ; + rdfs:comment "None" ; + foaf:homepage "https://www.phe-culturecollections.org.uk/collections/ecacc.aspx" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "90062901" ; + bioregistry.schema:provider_formatter "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1" . + +bioregistry.resource:ecao a bioregistry.schema:resource ; + rdfs:label "The Echinoderm Anatomy and Development Ontology" ; + rdfs:comment "None" ; + foaf:homepage "https://github.com/echinoderm-ontology/ecao_ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "ettensohn@cmu.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_$1" . + +bioregistry.resource:eccode a bioregistry.schema:resource ; + rdfs:label "Enzyme Nomenclature" ; + rdfs:comment "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions." ; + foaf:homepage "https://enzyme.expasy.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1.1.1.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ec-code" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENZYME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ec-code" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P591" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^\\d{1,2}(\\.\\d{0,3}){0,3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ec-code:$1" . + +bioregistry.resource:ecg a bioregistry.schema:resource ; + rdfs:label "Electrocardiogram Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:echobase a bioregistry.schema:resource ; + rdfs:label "EchoBASE post-genomic database for Escherichia coli" ; + rdfs:comment "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products." ; + foaf:homepage "https://www.york.ac.uk/res/thomas/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EB0170" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "echobase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "echobase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EchoBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EchoBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECHOBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^EB\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/echobase:$1" . + +bioregistry.resource:ecmdb a bioregistry.schema:resource ; + rdfs:label "E. coli Metabolite Database" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ECMDB00005" ; + bioregistry.schema:pattern "^ECMDB\\d+$" ; + bioregistry.schema:provider_formatter "http://ecmdb.ca/compounds/$1" . + +bioregistry.resource:eco a bioregistry.schema:resource ; + rdfs:label "Evidence ontology" ; + rdfs:comment "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity." ; + foaf:homepage "https://github.com/evidenceontology/evidenceontology/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mgiglio@som.umaryland.edu" ; + bioregistry.schema:example "0007807" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "ECO:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ECO:$1" . + +bioregistry.resource:ecocore a bioregistry.schema:resource ; + rdfs:label "An ontology of core ecological entities" ; + rdfs:comment "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms." ; + foaf:homepage "https://github.com/EcologicalSemantics/ecocore" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "p.buttigieg@gmail.com" ; + bioregistry.schema:example "00000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECOCORE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECOCORE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECOCORE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecocore" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_$1" . + +bioregistry.resource:ecocyc a bioregistry.schema:resource ; + rdfs:label "EcoCyc" ; + rdfs:comment "None" ; + foaf:homepage "http://ecocyc.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AICARTRANSIMPCYCLO-CPLX" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECOCYC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EcoCyc_REF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:provider_formatter "https://biocyc.org/gene?id=$1" . + +bioregistry.resource:ecogene a bioregistry.schema:resource ; + rdfs:label "Database of Escherichia coli Sequence and Function" ; + rdfs:comment "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites." ; + foaf:homepage "http://ecogene.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EG10173" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EcoGene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EcoGene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecogene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecogene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^EG\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ecogene:$1" . + +bioregistry.resource:ecoliwiki a bioregistry.schema:resource ; + rdfs:label "EcoliWiki from EcoliHub" ; + rdfs:comment "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes." ; + foaf:homepage "http://ecoliwiki.net/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "aaeA" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecoliwiki" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EcoliWiki" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecoliwiki" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECOLIWIKI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z0-9-]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ecoliwiki:$1" . + +bioregistry.resource:ecto a bioregistry.schema:resource ; + rdfs:label "Environmental conditions, treatments and exposures ontology" ; + rdfs:comment "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology)." ; + foaf:homepage "https://github.com/EnvironmentOntology/environmental-exposure-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "annethessen@gmail.com" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ecto/terms?iri=http://purl.obolibrary.org/obo/ECTO_$1" . + +bioregistry.resource:ecyano.entity a bioregistry.schema:resource ; + rdfs:label "E-cyanobacterium entity" ; + rdfs:comment "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "23" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECYANO.ENTITY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecyano.entity" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecyano.entity" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:ecyano ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ecyano.entity:$1" . + +bioregistry.resource:ecyano.experiment a bioregistry.schema:resource ; + rdfs:label "E-cyanobacterium Experimental Data" ; + rdfs:comment "E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "18" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecyano.experiment" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:ecyano ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ecyano.experiment:$1" . + +bioregistry.resource:ecyano.model a bioregistry.schema:resource ; + rdfs:label "E-cyanobacterium model" ; + rdfs:comment "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "26" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecyano.model" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECYANO.MODEL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecyano.model" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ecyano.model:$1" . + +bioregistry.resource:ecyano.rule a bioregistry.schema:resource ; + rdfs:label "E-cyanobacterium rule" ; + rdfs:comment "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "56" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecyano.rule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ECYANO.RULE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ecyano.rule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:ecyano ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ecyano.rule:$1" . + +bioregistry.resource:edam a bioregistry.schema:resource ; + rdfs:label "Bioinformatics operations, data types, formats, identifiers and topics" ; + rdfs:comment "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications)." ; + foaf:homepage "http://edamontology.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "edam@elixir-dk.org" ; + bioregistry.schema:example "data_1664" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EDAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EDAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "edam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "edam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "edam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^(data|topic|operation|format)\\_\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/edam:$1" . + +bioregistry.resource:efo a bioregistry.schema:resource ; + rdfs:label "Experimental Factor Ontology" ; + rdfs:comment "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team." ; + foaf:homepage "http://www.ebi.ac.uk/efo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://www.ebi.ac.uk/efo/efo.obo" ; + bioregistry.schema:email "efo-users@lists.sourceforge.net" ; + bioregistry.schema:example "0005147" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "efo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "efo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "efo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/efo:$1" . + +bioregistry.resource:eggnog a bioregistry.schema:resource ; + rdfs:label "eggNOG" ; + rdfs:comment "eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "veNOG12876" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eggnog" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EGGNOG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eggNOG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eggnog" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/eggnog:$1" . + +bioregistry.resource:ehda a bioregistry.schema:resource ; + rdfs:label "Human developmental anatomy, timed version" ; + rdfs:comment "None" ; + foaf:homepage "http://genex.hgu.mrc.ac.uk/" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "J.Bard@ed.ac.uk" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] . + +bioregistry.resource:ehdaa a bioregistry.schema:resource ; + rdfs:label "Human developmental anatomy, abstract version" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "J.Bard@ed.ac.uk" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDAA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDAA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDAA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:ehdaa2 a bioregistry.schema:resource ; + rdfs:label "Human developmental anatomy, abstract" ; + rdfs:comment "A structured controlled vocabulary of stage-specific anatomical structures of the developing human." ; + foaf:homepage "https://github.com/obophenotype/human-developmental-anatomy-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "J.Bard@ed.ac.uk" ; + bioregistry.schema:example "0000000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDAA2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDAA2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ehdaa2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EHDAA2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ehdaa2/terms?iri=http://purl.obolibrary.org/obo/EHDAA2_$1" . + +bioregistry.resource:elm a bioregistry.schema:resource ; + rdfs:label "Eukaryotic Linear Motif Resource" ; + rdfs:comment "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CLV_MEL_PAP_1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "elm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ELM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "elm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ELM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/elm:$1" . + +bioregistry.resource:emapa a bioregistry.schema:resource ; + rdfs:label "Mouse Developmental Anatomy Ontology" ; + rdfs:comment "An ontology for mouse anatomy covering embryonic development and postnatal stages." ; + foaf:homepage "http://www.informatics.jax.org/expression.shtml" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "Terry.Hayamizu@jax.org" ; + bioregistry.schema:example "26753" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EMAPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "emapa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EMAPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EMAPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EMAPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_$1" . + +bioregistry.resource:ena.embl a bioregistry.schema:resource ; + rdfs:label "European Nucleotide Archive" ; + rdfs:comment "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers." ; + foaf:homepage "http://www.ebi.ac.uk/ena/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BN000065" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ena.embl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ena.embl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENA.EMBL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z]+[0-9]+(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ena.embl:$1" . + +bioregistry.resource:encode a bioregistry.schema:resource ; + rdfs:label "ENCODE: Encyclopedia of DNA Elements" ; + rdfs:comment "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ENCSR163RYW" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "encode" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENCODE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "encode" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/encode:$1" . + +bioregistry.resource:enm a bioregistry.schema:resource ; + rdfs:label "eNanoMapper Ontology" ; + rdfs:comment "The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. " ; + foaf:homepage "http://www.enanomapper.net/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "enm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/enm/terms?iri=http://purl.obolibrary.org/obo/ENM_$1" . + +bioregistry.resource:ensembl a bioregistry.schema:resource ; + rdfs:label "Ensembl database of automatically annotated genomic data" ; + rdfs:comment "Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms." ; + foaf:homepage "https://www.ensembl.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ENSG00000139618" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENSEMBL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENSEMBL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P594" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENSEMBL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Ensembl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^((ENS[FPTG]\\\\d{11}(\\\\.\\\\d+)?)|(FB\\\\w{2}\\\\d{7})|(Y[A-Z]{2}\\\\d{3}[a-zA-Z](\\\\-[A-Z])?)|([A-Z_a-z0-9]+(\\\\.)?(t)?(\\\\d+)?([a-z])?))$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ensembl:$1" . + +bioregistry.resource:ensembl.bacteria a bioregistry.schema:resource ; + rdfs:label "Ensembl Bacteria" ; + rdfs:comment "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MU9_3181" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EnsemblBacteria" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.bacteria" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.bacteria" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENSEMBL.BACTERIA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ensembl.bacteria:$1" . + +bioregistry.resource:ensembl.fungi a bioregistry.schema:resource ; + rdfs:label "Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi." ; + rdfs:comment "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes." ; + foaf:homepage "http://fungi.ensembl.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CADAFLAT00006211" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EnsemblFungi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EnsemblFungi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.fungi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.fungi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENSEMBL.FUNGI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z-a-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ensembl.fungi:$1" . + +bioregistry.resource:ensembl.metazoa a bioregistry.schema:resource ; + rdfs:label "Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa." ; + rdfs:comment "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes." ; + foaf:homepage "http://metazoa.ensembl.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "FBtr0084214" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.metazoa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EnsemblMetazoa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.metazoa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENSEMBL.METAZOA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EnsemblMetazoa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\w+(\\.)?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ensembl.metazoa:$1" . + +bioregistry.resource:ensembl.plant a bioregistry.schema:resource ; + rdfs:label "Ensembl Plants" ; + rdfs:comment "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AT1G73965" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENSEMBL.PLANT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.plant" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.plant" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+(\\.\\d+)?(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ensembl.plant:$1" . + +bioregistry.resource:ensembl.protist a bioregistry.schema:resource ; + rdfs:label "Ensembl Protists" ; + rdfs:comment "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PF3D7_1328700" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENSEMBL.PROTIST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.protist" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensembl.protist" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ensembl.protist:$1" . + +bioregistry.resource:ensemblglossary a bioregistry.schema:resource ; + rdfs:label "Ensembl Glossary" ; + rdfs:comment "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used." ; + foaf:homepage "http://ensembl.org/glossary" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ensemblglossary" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ensemblglossary/terms?iri=http://purl.obolibrary.org/obo/ENSEMBLGLOSSARY_$1" . + +bioregistry.resource:envipath a bioregistry.schema:resource ; + rdfs:label "enviPath" ; + rdfs:comment "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "envipath" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/envipath:$1" . + +bioregistry.resource:envo a bioregistry.schema:resource ; + rdfs:label "Environment Ontology" ; + rdfs:comment "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations." ; + foaf:homepage "http://environmentontology.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "p.buttigieg@gmail.com" ; + bioregistry.schema:example "09200010" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENVO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENVO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "envo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ENVO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "envo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "envo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^ENVO:\\d{7,8}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ENVO:$1" . + +bioregistry.resource:eol a bioregistry.schema:resource ; + rdfs:label "Environment Ontology for Livestock" ; + rdfs:comment "L'ontologie EOL décrit les conditions d'environnement des élevages d'animaux domestiques. Elle décrit plus particulièrement les modalités de l'alimentation, de l'environnement, de la structure des élevages et des systèmes d'élevage" ; + foaf:homepage "http://www.atol-ontology.com" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "pylebail@rennes.inra.fr" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EOL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/eol/terms?iri=http://purl.obolibrary.org/obo/EOL_$1" . + +bioregistry.resource:epcc a bioregistry.schema:resource ; + rdfs:label "European Paediatric Cardiac Codes" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:epd a bioregistry.schema:resource ; + rdfs:label "Eukaryotic Promoter Database" ; + rdfs:comment "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis." ; + foaf:homepage "http://epd.vital-it.ch/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TA_H3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "epd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "epd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EPD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EPD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EPD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z-_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/epd:$1" . + +bioregistry.resource:erm a bioregistry.schema:resource ; + rdfs:label "European Registry of Materials" ; + rdfs:comment "The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ERM00000044" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "erm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "erm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^ERM[0-9]{8}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/erm:$1" . + +bioregistry.resource:ero a bioregistry.schema:resource ; + rdfs:label "eagle-i resource ontology" ; + rdfs:comment "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens." ; + foaf:homepage "https://open.med.harvard.edu/wiki/display/eaglei/Ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "Marc_Ciriello@hms.harvard.edu" ; + bioregistry.schema:example "0001655" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ERO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ERO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ero" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ERO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ero/terms?iri=http://purl.obolibrary.org/obo/ERO_$1" . + +bioregistry.resource:erv a bioregistry.schema:resource ; + rdfs:label "Human Endogenous Retrovirus Database" ; + rdfs:comment "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "THE1B" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "erv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ERV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "erv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z0-9\\-\\_]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/erv:$1" . + +bioregistry.resource:eu89h a bioregistry.schema:resource ; + rdfs:label "JRC Data Catalogue" ; + rdfs:comment "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "jrc-eurl-ecvam-chemagora" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EU89H" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eu89h" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eu89h" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-z0-9\\-_]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/eu89h:$1" . + +bioregistry.resource:euclinicaltrials a bioregistry.schema:resource ; + rdfs:label "EU Clinical Trials" ; + rdfs:comment """The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r +It also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2008-005144-16" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EUCLINICALTRIALS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "euclinicaltrials" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "euclinicaltrials" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d{4}\\-\\d{6}\\-\\d{2}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/euclinicaltrials:$1" . + +bioregistry.resource:eupath a bioregistry.schema:resource ; + rdfs:label "VEuPathDB ontology" ; + rdfs:comment "The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available." ; + foaf:homepage "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "stoeckrt@pennmedicine.upenn.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EUPATH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EUPATH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "eupath" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EUPATH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_$1" . + +bioregistry.resource:ev a bioregistry.schema:resource ; + rdfs:label "eVOC (Expressed Sequence Annotation for Humans)" ; + rdfs:comment "None" ; + foaf:homepage "http://www.evocontology.org/" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "evoc@sanbi.ac.za" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] . + +bioregistry.resource:evm a bioregistry.schema:resource ; + rdfs:label "eVOC mouse development stage" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true . + +bioregistry.resource:exac.gene a bioregistry.schema:resource ; + rdfs:label "ExAC Gene" ; + rdfs:comment "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ENSG00000169174" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EXAC.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "exac.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "exac.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^ENSG\\d{11}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/exac.gene:$1" . + +bioregistry.resource:exac.transcript a bioregistry.schema:resource ; + rdfs:label "ExAC Transcript" ; + rdfs:comment "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ENST00000407236" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "exac.transcript" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "exac.transcript" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EXAC.TRANSCRIPT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^ENST\\d{11}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/exac.transcript:$1" . + +bioregistry.resource:exac.variant a bioregistry.schema:resource ; + rdfs:label "ExAC Variant" ; + rdfs:comment "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "22-46615880-T-C" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EXAC.VARIANT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "exac.variant" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "exac.variant" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/exac.variant:$1" . + +bioregistry.resource:exo a bioregistry.schema:resource ; + rdfs:label "Exposure ontology" ; + rdfs:comment "Vocabularies for describing exposure data to inform understanding of environmental health." ; + foaf:homepage "http://ctdbase.org/help/exposureHelp.jsp" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cjmattin@ncsu.edu" ; + bioregistry.schema:example "0000078" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EXO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EXO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ExO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "exo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ExO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/exo/terms?iri=http://purl.obolibrary.org/obo/EXO_$1" . + +bioregistry.resource:facebase a bioregistry.schema:resource ; + rdfs:label "FaceBase Data Repository" ; + rdfs:comment "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "FB00000917" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "facebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "facebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FACEBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^FB\\d{8}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/facebase:$1" . + +bioregistry.resource:fairsharing a bioregistry.schema:resource ; + rdfs:label "FAIRsharing" ; + rdfs:comment "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "bsg-000052" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fairsharing" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRSHARING" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fairsharing" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^bsg-[dscp]?\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/fairsharing:$1" . + +bioregistry.resource:fao a bioregistry.schema:resource ; + rdfs:label "Fungal gross anatomy" ; + rdfs:comment "A structured controlled vocabulary for the anatomy of fungi." ; + foaf:homepage "https://github.com/obophenotype/fungal-anatomy-ontology/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mah79@cam.ac.uk" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fao/terms?iri=http://purl.obolibrary.org/obo/FAO_$1" . + +bioregistry.resource:fbbi a bioregistry.schema:resource ; + rdfs:label "Biological Imaging Methods Ontology" ; + rdfs:comment "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research." ; + foaf:homepage "http://cellimagelibrary.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "dorloff@ncmir.ucsd.edu" ; + bioregistry.schema:example "00000268" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBbi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBbi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBbi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fbbi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBBI_$1" . + +bioregistry.resource:fbbt a bioregistry.schema:resource ; + rdfs:label "Drosophila gross anatomy" ; + rdfs:comment "An ontology of Drosophila melanogaster anatomy." ; + foaf:homepage "http://purl.obolibrary.org/obo/fbbt" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cp390@cam.ac.uk" ; + bioregistry.schema:example "00007294" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBbt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBbt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fbbt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBbt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FB-BT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{8}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBBT_$1" . + +bioregistry.resource:fbcv a bioregistry.schema:resource ; + rdfs:label "FlyBase Controlled Vocabulary" ; + rdfs:comment "A miscellaneous ontology of terms used for curation in FlyBase, including the DPO." ; + foaf:homepage "http://purl.obolibrary.org/obo/fbcv" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo" ; + bioregistry.schema:email "cp390@cam.ac.uk" ; + bioregistry.schema:example "0000586" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fbcv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBcv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FB-CV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBcv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBCV_$1" . + +bioregistry.resource:fbdv a bioregistry.schema:resource ; + rdfs:label "Drosophila development" ; + rdfs:comment "An ontology of Drosophila melanogaster developmental stages." ; + foaf:homepage "http://purl.obolibrary.org/obo/fbdv" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cp390@cam.ac.uk" ; + bioregistry.schema:example "00000000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBdv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fbdv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBdv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FB-DV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{8}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fbdv/terms?iri=http://purl.obolibrary.org/obo/FBDV_$1" . + +bioregistry.resource:fbol a bioregistry.schema:resource ; + rdfs:label "International Fungal Working Group Fungal Barcoding." ; + rdfs:comment "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms." ; + foaf:homepage "http://www.fungalbarcoding.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2224" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fbol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBOL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fbol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FBOL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/fbol:$1" . + +bioregistry.resource:fbql a bioregistry.schema:resource ; + rdfs:label "Flybase Quantitative Loci" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fbql" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:fbtc a bioregistry.schema:resource ; + rdfs:label "Flybase Cell Line" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:fideo a bioregistry.schema:resource ; + rdfs:label "Food Interactions with Drugs Evidence Ontology" ; + rdfs:comment "The Food Interactions with Drugs Evidence Ontology (FIDEO) represents Food-Drug Interactions and underlying interaction mechanisms described in scientific publications, drug and adverse effects databases, and drug interactions compendia. The ontology builds on previous efforts from the FoodOn, DRON, ChEBI, and DIDEO ontologies as well as the Thériaque database. This ontology is maintained at https://gitub.u-bordeaux.fr/erias/fideo, and requests for changes or additions should be filed at the issue tracker there." ; + foaf:homepage "https://gitub.u-bordeaux.fr/erias/fideo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "georgeta.bordea@u-bordeaux.fr" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FIDEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FIDEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fideo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fideo/terms?iri=http://purl.obolibrary.org/obo/FIDEO_$1" . + +bioregistry.resource:fishbase.species a bioregistry.schema:resource ; + rdfs:label "FishBase" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "6472" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P938" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] . + +bioregistry.resource:fix a bioregistry.schema:resource ; + rdfs:label "Physico-chemical methods and properties" ; + rdfs:comment "An ontology of physico-chemical methods and properties." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0000390" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fix" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FIX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FIX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FIX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fix/terms?iri=http://purl.obolibrary.org/obo/FIX_$1" . + +bioregistry.resource:flopo a bioregistry.schema:resource ; + rdfs:label "Flora Phenotype Ontology" ; + rdfs:comment "Traits and phenotypes of flowering plants occurring in digitized Floras" ; + foaf:homepage "https://github.com/flora-phenotype-ontology/flopoontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "robert.hoehndorf@kaust.edu.sa" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "flopo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FLOPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FLOPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FLOPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/flopo/terms?iri=http://purl.obolibrary.org/obo/FLOPO_$1" . + +bioregistry.resource:flowrepository a bioregistry.schema:resource ; + rdfs:label "FlowRepository" ; + rdfs:comment "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "FR-FCM-ZYGW" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "flowrepository" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "flowrepository" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^FR\\-FCM\\-\\w{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/flowrepository:$1" . + +bioregistry.resource:flybase a bioregistry.schema:resource ; + rdfs:label "FlyBase" ; + rdfs:comment "FlyBase is the database of the Drosophila Genome Projects and of associated literature." ; + foaf:homepage "http://flybase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "FBgn0011293" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3852" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FlyBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FLYBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FlyBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^FB\\w{2}\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/fb:$1" . + +bioregistry.resource:fma a bioregistry.schema:resource ; + rdfs:label "Foundational Model of Anatomy" ; + rdfs:comment "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy." ; + foaf:homepage "http://si.washington.edu/projects/fma" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mejino@u.washington.edu" ; + bioregistry.schema:example "63189" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^FMA:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/FMA:$1" . + +bioregistry.resource:fobi a bioregistry.schema:resource ; + rdfs:label "Food-Biomarker Ontology" ; + rdfs:comment "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "polcaes@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fobi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fobi/terms?iri=http://purl.obolibrary.org/obo/FOBI_$1" . + +bioregistry.resource:foodb.compound a bioregistry.schema:resource ; + rdfs:label "FooDB Compound" ; + rdfs:comment "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds." ; + foaf:homepage "https://foodb.ca/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "FDB002100" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "foodb.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "foodb.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "foodb.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOODB.COMPOUND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^FDB\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/foodb.compound:$1" . + +bioregistry.resource:foodon a bioregistry.schema:resource ; + rdfs:label "The Food Ontology" ; + rdfs:comment "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies." ; + foaf:homepage "https://foodon.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "damion_dooley@sfu.ca" ; + bioregistry.schema:example "03307879" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "foodon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOODON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOODON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOODON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "foodon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "foodon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^FOODON:[0-9]{8}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/FOODON:$1" . + +bioregistry.resource:fovt a bioregistry.schema:resource ; + rdfs:label "FuTRES Ontology of Vertebrate Traits" ; + rdfs:comment "None" ; + foaf:homepage "https://github.com/futres/fovt" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "rlwalls2008@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOVT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOVT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fovt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fovt/terms?iri=http://purl.obolibrary.org/obo/FOVT_$1" . + +bioregistry.resource:fplx a bioregistry.schema:resource ; + rdfs:label "FamPlex" ; + rdfs:comment "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships." ; + foaf:homepage "https://sorgerlab.github.io/famplex/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GPIb_IX_V" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fplx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FPLX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FPLX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fplx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-zA-Z0-9][A-Za-z0-9_]+$" ; + bioregistry.schema:provider_formatter "https://sorgerlab.github.io/famplex/$1" . + +bioregistry.resource:fsnp a bioregistry.schema:resource ; + rdfs:label "F-SNP" ; + rdfs:comment "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "rs17852708" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fsnp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FSNP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fsnp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^rs\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/fsnp:$1" . + +bioregistry.resource:funcbase.fly a bioregistry.schema:resource ; + rdfs:label "FuncBase Fly" ; + rdfs:comment "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10194" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "funcbase.fly" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FUNCBASE.FLY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "funcbase.fly" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/funcbase.fly:$1" . + +bioregistry.resource:funcbase.human a bioregistry.schema:resource ; + rdfs:label "FuncBase Human" ; + rdfs:comment "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "119514" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "funcbase.human" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "funcbase.human" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FUNCBASE.HUMAN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/funcbase.human:$1" . + +bioregistry.resource:funcbase.mouse a bioregistry.schema:resource ; + rdfs:label "FuncBase Mouse" ; + rdfs:comment "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1351341" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "funcbase.mouse" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FUNCBASE.MOUSE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "funcbase.mouse" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/funcbase.mouse:$1" . + +bioregistry.resource:funcbase.yeast a bioregistry.schema:resource ; + rdfs:label "FuncBase Yeast" ; + rdfs:comment "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2701" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "funcbase.yeast" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "funcbase.yeast" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FUNCBASE.YEAST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/funcbase.yeast:$1" . + +bioregistry.resource:fungidb a bioregistry.schema:resource ; + rdfs:label "FungiDB" ; + rdfs:comment "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CNBG_0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FUNGIDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fungidb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fungidb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Za-z_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/fungidb:$1" . + +bioregistry.resource:fyler a bioregistry.schema:resource ; + rdfs:label "Fyler" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:fypo a bioregistry.schema:resource ; + rdfs:label "Fission Yeast Phenotype Ontology" ; + rdfs:comment "A formal ontology of phenotypes observed in fission yeast." ; + foaf:homepage "https://github.com/pombase/fypo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/fypo.obo" ; + bioregistry.schema:email "mah79@cam.ac.uk" ; + bioregistry.schema:example "0001707" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FYPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FYPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FYPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "fypo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FYPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/fypo/terms?iri=http://purl.obolibrary.org/obo/FYPO_$1" . + +bioregistry.resource:ga4ghdos a bioregistry.schema:resource ; + rdfs:label "Data Object Service" ; + rdfs:comment "Assists in resolving data across cloud resources." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ga4ghdos" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ga4ghdos" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GA4GHDOS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[a-zA-Z0-9\\-:#/\\.]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ga4ghdos:$1" . + +bioregistry.resource:gabi a bioregistry.schema:resource ; + rdfs:label "Network of Different Plant Genomic Research Projects" ; + rdfs:comment "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'." ; + foaf:homepage "http://www.gabipd.org/information/about.shtml" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2679240" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gabi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GABI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GABI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gabi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gabi:$1" . + +bioregistry.resource:galen a bioregistry.schema:resource ; + rdfs:label "Galen Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GALEN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:gard a bioregistry.schema:resource ; + rdfs:label "Genetic and Rare Diseases Information Center" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "6038" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P4317" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] . + +bioregistry.resource:gateway a bioregistry.schema:resource ; + rdfs:label "Health Data Research Innovation Gateway" ; + rdfs:comment "The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "fd8d0743-344a-4758-bb97-f8ad84a37357" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gateway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gateway:$1" . + +bioregistry.resource:gaz a bioregistry.schema:resource ; + rdfs:label "Gazetteer" ; + rdfs:comment "A gazetteer constructed on ontological principles" ; + foaf:homepage "http://environmentontology.github.io/gaz/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/gaz.obo" ; + bioregistry.schema:email "lschriml@som.umaryland.edu" ; + bioregistry.schema:example "00620027" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P6778" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gaz" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GAZ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GAZ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GAZ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{8}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/gaz/terms?iri=http://purl.obolibrary.org/obo/GAZ_$1" . + +bioregistry.resource:gbif a bioregistry.schema:resource ; + rdfs:label "Global Biodiversity Information Facility" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4238" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P846" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:provider_formatter "https://www.gbif.org/species/$1" . + +bioregistry.resource:gc a bioregistry.schema:resource ; + rdfs:label "Genetic Code" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:provider_formatter "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1" . + +bioregistry.resource:gcst a bioregistry.schema:resource ; + rdfs:label "GWAS Catalog" ; + rdfs:comment "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GCST000035" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gcst" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gcst" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^GCST\\d{6}\\d*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gcst:$1" . + +bioregistry.resource:gdc a bioregistry.schema:resource ; + rdfs:label "Genomic Data Commons Data Portal" ; + rdfs:comment "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ae8c77fe-e6c8-44d5-8265-4a38c637bbef" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gdc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gdc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GDC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gdc:$1" . + +bioregistry.resource:gdsc a bioregistry.schema:resource ; + rdfs:label "Genomics of Drug Sensitivity in Cancer" ; + rdfs:comment "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1242" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gdsc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gdsc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gdsc:$1" . + +bioregistry.resource:gecko a bioregistry.schema:resource ; + rdfs:label "Genomics Cohorts Knowledge Ontology" ; + rdfs:comment "An ontology to represent genomics cohort attributes." ; + foaf:homepage "https://github.com/IHCC-cohorts/GECKO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "rbca.jackson@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GECKO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gecko" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GECKO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_$1" . + +bioregistry.resource:genatlas a bioregistry.schema:resource ; + rdfs:label "Genatlas" ; + rdfs:comment "GenAtlas is a database containing information on human genes, markers and phenotypes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HBB" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genatlas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENATLAS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genatlas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GenAtlas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/genatlas:$1" . + +bioregistry.resource:genecards a bioregistry.schema:resource ; + rdfs:label "GeneCards" ; + rdfs:comment "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ABL1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENECARDS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genecards" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genecards" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GeneCards" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^[A-Za-z-0-9_]+(\\@)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/genecards:$1" . + +bioregistry.resource:genedb a bioregistry.schema:resource ; + rdfs:label "GeneDB" ; + rdfs:comment "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed." ; + foaf:homepage "http://www.genedb.org/gene/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LinJ.20.0070" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GeneDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENEDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GeneDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GeneDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[\\w\\d\\.-]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/genedb:$1" . + +bioregistry.resource:genefarm a bioregistry.schema:resource ; + rdfs:label "GeneFarm" ; + rdfs:comment "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4892" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENEFARM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genefarm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genefarm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/genefarm:$1" . + +bioregistry.resource:genepio a bioregistry.schema:resource ; + rdfs:label "Genomic Epidemiology Ontology" ; + rdfs:comment "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks." ; + foaf:homepage "http://genepio.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "damion_dooley@sfu.ca" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENEPIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genepio" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENEPIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_$1" . + +bioregistry.resource:genetree a bioregistry.schema:resource ; + rdfs:label "GeneTree" ; + rdfs:comment "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ENSGT00550000074763" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genetree" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENETREE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genetree" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GeneTree" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^ENSGT\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/genetree:$1" . + +bioregistry.resource:genewiki a bioregistry.schema:resource ; + rdfs:label "Gene Wiki" ; + rdfs:comment "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1017" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GeneWiki" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genewiki" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genewiki" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENEWIKI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/genewiki:$1" . + +bioregistry.resource:geno a bioregistry.schema:resource ; + rdfs:label "Genotype Ontology" ; + rdfs:comment """GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. + +Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013""" ; + foaf:homepage "https://github.com/monarch-initiative/GENO-ontology/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/monarch-initiative/GENO-ontology/develop/geno-full.obo" ; + bioregistry.schema:email "mhb120@gmail.com" ; + bioregistry.schema:example "0000632" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "geno" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_$1" . + +bioregistry.resource:genpept a bioregistry.schema:resource ; + rdfs:label "GenPept" ; + rdfs:comment "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CAA71118.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genpept" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENPEPT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genpept" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w{3}\\d{5}(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/genpept:$1" . + +bioregistry.resource:genprop a bioregistry.schema:resource ; + rdfs:label "Genome Properties" ; + rdfs:comment "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GenProp0699" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genprop" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GENPROP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "genprop" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^GenProp\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/genprop:$1" . + +bioregistry.resource:geogeo a bioregistry.schema:resource ; + rdfs:label "Geographical Entity Ontology" ; + rdfs:comment "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\"." ; + foaf:homepage "https://github.com/ufbmi/geographical-entity-ontology/wiki" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "hoganwr@gmail.com" ; + bioregistry.schema:example "GEO_000000021" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "geogeo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "geo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^GEO_[0-9]{9}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/geogeo:$1" . + +bioregistry.resource:gexo a bioregistry.schema:resource ; + rdfs:label "Gene Expression Ontology" ; + rdfs:comment "Gene Expression Ontology" ; + foaf:homepage "http://www.semantic-systems-biology.org/apo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "vladimir.n.mironov@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GEXO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gexo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/gexo/terms?iri=http://purl.obolibrary.org/obo/GEXO_$1" . + +bioregistry.resource:ghr a bioregistry.schema:resource ; + rdfs:label "Genetics Home Reference" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "saddan" ; + bioregistry.schema:provider_formatter "https://medlineplus.gov/genetics/condition/$1" . + +bioregistry.resource:giardiadb a bioregistry.schema:resource ; + rdfs:label "GiardiaDB" ; + rdfs:comment "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GL50803_102438" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "giardiadb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GIARDIADB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "giardiadb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/giardiadb:$1" . + +bioregistry.resource:glida.gpcr a bioregistry.schema:resource ; + rdfs:label "GLIDA GPCR" ; + rdfs:comment "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ACM1_HUMAN" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glida.gpcr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GLIDA.GPCR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glida.gpcr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Z-_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/glida.gpcr:$1" . + +bioregistry.resource:glida.ligand a bioregistry.schema:resource ; + rdfs:label "GLIDA Ligand" ; + rdfs:comment "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "L000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GLIDA.LIGAND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glida.ligand" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glida.ligand" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^L\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/glida.ligand:$1" . + +bioregistry.resource:glycoepitope a bioregistry.schema:resource ; + rdfs:label "GlycoEpitope" ; + rdfs:comment "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EP0311" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GLYCOEPITOPE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glycoepitope" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glycoepitope" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^EP\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/glycoepitope:$1" . + +bioregistry.resource:glycomedb a bioregistry.schema:resource ; + rdfs:label "GlycomeDB" ; + rdfs:comment "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "G77500AY" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GLYCOMEDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glycomedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glycomedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/glycomedb:$1" . + +bioregistry.resource:glycopost a bioregistry.schema:resource ; + rdfs:label "GlycoPOST" ; + rdfs:comment "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GPST000024" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glycopost" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^GPST[0-9]{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/glycopost:$1" . + +bioregistry.resource:glygen a bioregistry.schema:resource ; + rdfs:label "GlyGen: Computational and Informatics Resources for Glycoscience" ; + rdfs:comment "None" ; + foaf:homepage "https://glygen.org/glycan/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "G24361QY" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GlyGen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:provider_formatter "https://glygen.org/glycan/$1" . + +bioregistry.resource:glytoucan a bioregistry.schema:resource ; + rdfs:label "GlyTouCan" ; + rdfs:comment "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "G00054MO" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glytoucan" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GLYTOUCAN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "glytoucan" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^G[0-9]{5}[A-Z]{2}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/glytoucan:$1" . + +bioregistry.resource:gmd a bioregistry.schema:resource ; + rdfs:label "Golm Metabolome Database" ; + rdfs:comment "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "68513255-fc44-4041-bc4b-4fd2fae7541d" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GMD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gmd:$1" . + +bioregistry.resource:gmd.analyte a bioregistry.schema:resource ; + rdfs:label "Golm Metabolome Database Analyte" ; + rdfs:comment "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GMD.ANALYTE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd.analyte" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd.analyte" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gmd.analyte:$1" . + +bioregistry.resource:gmd.gcms a bioregistry.schema:resource ; + rdfs:label "Golm Metabolome Database GC-MS spectra" ; + rdfs:comment "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "53d583d8-40c6-40e1-9296-23f821cd77a5" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd.gcms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GMD.GCMS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd.gcms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gmd.gcms:$1" . + +bioregistry.resource:gmd.profile a bioregistry.schema:resource ; + rdfs:label "Golm Metabolome Database Profile" ; + rdfs:comment "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10b38aaf-b977-4950-85b8-f4775f66658d" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd.profile" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd.profile" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GMD.PROFILE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gmd.profile:$1" . + +bioregistry.resource:gmd.ref a bioregistry.schema:resource ; + rdfs:label "Golm Metabolome Database Reference Substance" ; + rdfs:comment "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "8cf84adb-b4db-4807-ac98-0004247c35df" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd.ref" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gmd.ref" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GMD.REF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gmd.ref:$1" . + +bioregistry.resource:gmelin a bioregistry.schema:resource ; + rdfs:label "Gmelins Handbuch der anorganischen Chemie" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1466" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P1578" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^[1-9][0-9]{3,6}$" . + +bioregistry.resource:gno a bioregistry.schema:resource ; + rdfs:label "Glycan Naming and Subsumption Ontology (GNOme)" ; + rdfs:comment "An ontology for glycans based on GlyTouCan, but organized by subsumption." ; + foaf:homepage "https://gnome.glyomics.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "nje5@georgetown.edu" ; + bioregistry.schema:example "10004892" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gno" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GNO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GNO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{8}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_$1" . + +bioregistry.resource:gnpis a bioregistry.schema:resource ; + rdfs:label "GnpIS" ; + rdfs:comment "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AY109603" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gnpis" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gnpis" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GNPIS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gnpis:$1" . + +bioregistry.resource:go a bioregistry.schema:resource ; + rdfs:label "Gene Ontology" ; + rdfs:comment "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism." ; + foaf:homepage "http://geneontology.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/go.obo" ; + bioregistry.schema:email "suzia@stanford.edu" ; + bioregistry.schema:example "0032571" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "go" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P686" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "go" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "go" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^GO:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/GO:$1" . + +bioregistry.resource:go.model a bioregistry.schema:resource ; + rdfs:label "Gene Ontology Causal Assembly Model" ; + rdfs:comment "None" ; + foaf:homepage "http://www.geneontology.org/gocam" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5fce9b7300001250" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gomodel" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:provider_formatter "noctua.geneontology.org/editor/graph/gomodel:$1" . + +bioregistry.resource:go.ref a bioregistry.schema:resource ; + rdfs:label "Gene Ontology Database references" ; + rdfs:comment "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made." ; + foaf:homepage "http://current.geneontology.org/metadata/gorefs/index.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0000041" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GO_REF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GO_REF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "go_ref" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "go.ref" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^GO_REF:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/GO_REF:$1" . + +bioregistry.resource:goa a bioregistry.schema:resource ; + rdfs:label "Gene Ontology Annotation Database Identifier" ; + rdfs:comment "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups." ; + foaf:homepage "http://www.ebi.ac.uk/GOA/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P12345" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GOA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GOA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "goa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "goa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/goa:$1" . + +bioregistry.resource:goeco a bioregistry.schema:resource ; + rdfs:label "GO Evidence Code" ; + rdfs:comment "None" ; + foaf:homepage "http://geneontology.org/docs/guide-go-evidence-codes/" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:gold a bioregistry.schema:resource ; + rdfs:label "Genomes Online Database" ; + rdfs:comment "The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Gs0000008" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gold" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z][a-z][0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gold:$1" . + +bioregistry.resource:gold.genome a bioregistry.schema:resource ; + rdfs:label "GOLD genome" ; + rdfs:comment """- DEPRECATION NOTE - +Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. + +The GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Gi07796" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GOLD.GENOME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gold.genome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gold.genome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^(Gi|Gc)\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gold.genome:$1" . + +bioregistry.resource:gold.meta a bioregistry.schema:resource ; + rdfs:label "GOLD metadata" ; + rdfs:comment """- DEPRECATION NOTE - +Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. + +The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Gm00047" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gold.meta" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gold.meta" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GOLD.META" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^Gm\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gold.meta:$1" . + +bioregistry.resource:google.patent a bioregistry.schema:resource ; + rdfs:label "Google Patents" ; + rdfs:comment "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "US4145692" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "google.patent" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "google.patent" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GOOGLE.PATENT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z]{2}\\d+([A-Z])?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/google.patent:$1" . + +bioregistry.resource:google.scholar a bioregistry.schema:resource ; + rdfs:label "Google Scholar Researcher ID" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GSID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:gorel a bioregistry.schema:resource ; + rdfs:label "GO Relations" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GOREL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GOREL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:gpcrdb a bioregistry.schema:resource ; + rdfs:label "G protein-coupled receptor database" ; + rdfs:comment "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "RL3R1_HUMAN" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gpcrdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GPCRDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gpcrdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GPCRDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gpcrdb:$1" . + +bioregistry.resource:gpmdb a bioregistry.schema:resource ; + rdfs:label "Global Proteome Machine Database" ; + rdfs:comment "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GPM32310002988" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gpmdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gpmdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GPMDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^GPM\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gpmdb:$1" . + +bioregistry.resource:gramene.gene a bioregistry.schema:resource ; + rdfs:label "Gramene Gene" ; + rdfs:comment "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene." ; + foaf:homepage "http://www.gramene.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GR:0080039" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GR_GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRAMENE.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^GR\\:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gramene.gene:$1" . + +bioregistry.resource:gramene.growthstage a bioregistry.schema:resource ; + rdfs:label "Gramene Growth Stage Ontology" ; + rdfs:comment "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0007133" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.growthstage" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.growthstage" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRAMENE.GROWTHSTAGE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "http://www.gramene.org/db/ontology/search?id=GRO:$1" . + +bioregistry.resource:gramene.protein a bioregistry.schema:resource ; + rdfs:label "Gramene protein" ; + rdfs:comment "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene." ; + foaf:homepage "http://www.gramene.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "78073" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRAMENE.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GR_PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gramene.protein:$1" . + +bioregistry.resource:gramene.qtl a bioregistry.schema:resource ; + rdfs:label "Gramene QTL" ; + rdfs:comment "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene." ; + foaf:homepage "http://www.gramene.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CQG5" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.qtl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.qtl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRAMENE.QTL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GR_QTL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gramene.qtl:$1" . + +bioregistry.resource:gramene.taxonomy a bioregistry.schema:resource ; + rdfs:label "Gramene Taxonomy" ; + rdfs:comment "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GR_tax:013681" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRAMENE.TAXONOMY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gramene.taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^GR\\_tax\\:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gramene.taxonomy:$1" . + +bioregistry.resource:greengenes a bioregistry.schema:resource ; + rdfs:label "16S rRNA gene database" ; + rdfs:comment "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies." ; + foaf:homepage "http://greengenes.lbl.gov/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "100000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GREENGENES" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "greengenes" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Greengenes" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "greengenes" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/greengenes:$1" . + +bioregistry.resource:grid a bioregistry.schema:resource ; + rdfs:label "Global Research Identifier Database" ; + rdfs:comment "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "grid.225360.0" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "grid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "grid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/grid:$1" . + +bioregistry.resource:grin.taxonomy a bioregistry.schema:resource ; + rdfs:label "Germplasm Resources Information Network" ; + rdfs:comment "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact." ; + foaf:homepage "https://www.ars-grin.gov/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "19333" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRIN.TAXONOMY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "grin.taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "grin.taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/grin.taxonomy:$1" . + +bioregistry.resource:grsdb a bioregistry.schema:resource ; + rdfs:label "G-Rich Sequences Database" ; + rdfs:comment "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10142" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GRSDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "grsdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "grsdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/grsdb:$1" . + +bioregistry.resource:gsfa a bioregistry.schema:resource ; + rdfs:label "General Standard for Food Additives (GSFA) Online Database" ; + rdfs:comment "None" ; + foaf:homepage "http://www.fao.org/gsfaonline" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "174" ; + bioregistry.schema:provider_formatter "http://www.fao.org/gsfaonline/additives/details.html?id=$1" . + +bioregistry.resource:gsso a bioregistry.schema:resource ; + rdfs:label "Gender, Sex, and Sexual Orientation (GSSO) ontology" ; + rdfs:comment "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology." ; + foaf:homepage "https://gsso.research.cchmc.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "kronkcj@mail.uc.edu" ; + bioregistry.schema:example "002368" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GSSO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gsso" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gsso" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GSSO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^GSSO:\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/GSSO:$1" . + +bioregistry.resource:gtex a bioregistry.schema:resource ; + rdfs:label "Genotype-Tissue Expression" ; + rdfs:comment "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BRIP1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gtex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gtex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GTEX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GTEx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:pattern "^\\w.+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gtex:$1" . + +bioregistry.resource:gtr a bioregistry.schema:resource ; + rdfs:label "Genetic Testing Registry" ; + rdfs:comment "None" ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/gtr/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AN0097748" . + +bioregistry.resource:gudmap a bioregistry.schema:resource ; + rdfs:label "Genitourinary Development Molecular Anatomy Project" ; + rdfs:comment "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Q-2958" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GUDMAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gudmap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gudmap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gudmap:$1" . + +bioregistry.resource:gwascentral.marker a bioregistry.schema:resource ; + rdfs:label "GWAS Central Marker" ; + rdfs:comment "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker." ; + foaf:homepage "https://www.gwascentral.org/markers" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HGVM15354" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gwascentral.marker" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GWASCENTRAL.MARKER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gwascentral.marker" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^HGVM\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gwascentral.marker:$1" . + +bioregistry.resource:gwascentral.phenotype a bioregistry.schema:resource ; + rdfs:label "GWAS Central Phenotype" ; + rdfs:comment "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype." ; + foaf:homepage "https://www.gwascentral.org/phenotypes" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HGVPM623" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gwascentral.phenotype" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GWASCENTRAL.PHENOTYPE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gwascentral.phenotype" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^HGVPM\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gwascentral.phenotype:$1" . + +bioregistry.resource:gwascentral.study a bioregistry.schema:resource ; + rdfs:label "GWAS Central Study" ; + rdfs:comment "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study." ; + foaf:homepage "https://www.gwascentral.org/studies" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HGVST1828" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GWASCENTRAL.STUDY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gwascentral.study" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gwascentral.study" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^HGVST\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gwascentral.study:$1" . + +bioregistry.resource:gxa.expt a bioregistry.schema:resource ; + rdfs:label "GXA Expt" ; + rdfs:comment "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "E-MTAB-2037" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gxa.expt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gxa.expt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GXA.EXPT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[AEP]-\\w{4}-\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gxa.expt:$1" . + +bioregistry.resource:gxa.gene a bioregistry.schema:resource ; + rdfs:label "GXA Gene" ; + rdfs:comment "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AT4G01080" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GXA.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gxa.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "gxa.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/gxa.gene:$1" . + +bioregistry.resource:hamap a bioregistry.schema:resource ; + rdfs:label "High-quality Automated and Manual Annotation of microbial Proteomes" ; + rdfs:comment "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries." ; + foaf:homepage "http://hamap.expasy.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MF_01400" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HAMAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HAMAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hamap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hamap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HAMAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^MF_\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hamap:$1" . + +bioregistry.resource:hancestro a bioregistry.schema:resource ; + rdfs:label "Human Ancestry Ontology" ; + rdfs:comment "Human ancestry ontology for the NHGRI GWAS Catalog" ; + foaf:homepage "https://github.com/EBISPOT/ancestro" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "danielle.welter@uni.lu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HANCESTRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HANCESTRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hancestro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HANCESTRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/hancestro/terms?iri=http://purl.obolibrary.org/obo/HANCESTRO_$1" . + +bioregistry.resource:hao a bioregistry.schema:resource ; + rdfs:label "Hymenoptera Anatomy Ontology" ; + rdfs:comment "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)" ; + foaf:homepage "http://hymao.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "diapriid@gmail.com" ; + bioregistry.schema:example "0000187" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/hao/terms?iri=http://purl.obolibrary.org/obo/HAO_$1" . + +bioregistry.resource:hcao a bioregistry.schema:resource ; + rdfs:label "Human Cell Atlas Ontology" ; + rdfs:comment "Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hcao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/hcao/terms?iri=http://purl.obolibrary.org/obo/HCAO_$1" . + +bioregistry.resource:hcpcs a bioregistry.schema:resource ; + rdfs:label "Healthcare Common Procedure Coding System" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HCPCS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HCPCS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:hcvdb a bioregistry.schema:resource ; + rdfs:label "Hepatitis C Virus Database" ; + rdfs:comment "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses." ; + foaf:homepage "http://euhcvdb.ibcp.fr" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "M58335" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hcvdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hcvdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HCVDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^M\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hcvdb:$1" . + +bioregistry.resource:hdr a bioregistry.schema:resource ; + rdfs:label "Homeodomain Research" ; + rdfs:comment "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "63" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HDR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hdr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hdr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hdr:$1" . + +bioregistry.resource:hgmd a bioregistry.schema:resource ; + rdfs:label "Human Gene Mutation Database" ; + rdfs:comment "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CALM1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgmd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgmd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HGMD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hgmd:$1" . + +bioregistry.resource:hgnc a bioregistry.schema:resource ; + rdfs:label "HUGO Gene Nomenclature Committee" ; + rdfs:comment "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database." ; + foaf:homepage "http://www.genenames.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "16793" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HGNC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgnc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HGNC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgnc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HGNC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HGNC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P354" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HUGO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^((HGNC|hgnc):)?\\d{1,5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hgnc:$1" . + +bioregistry.resource:hgnc.genefamily a bioregistry.schema:resource ; + rdfs:label "HGNC gene family" ; + rdfs:comment "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families." ; + foaf:homepage "http://www.genenames.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2029" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HGNC.GENEFAMILY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgnc.genefamily" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgnc.genefamily" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hgnc.genefamily:$1" . + +bioregistry.resource:hgnc.genegroup a bioregistry.schema:resource ; + rdfs:label "HGNC Gene Group" ; + rdfs:comment "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "141" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgnc.genegroup" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hgnc.genegroup:$1" . + +bioregistry.resource:hinv.locus a bioregistry.schema:resource ; + rdfs:label "H-InvDb Locus" ; + rdfs:comment "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HIX0004394" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HINV.LOCUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hinv.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hinv.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^HIX\\d{7}(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hinv.locus:$1" . + +bioregistry.resource:hinv.protein a bioregistry.schema:resource ; + rdfs:label "H-InvDb Protein" ; + rdfs:comment "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HIP000030660" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HINV.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hinv.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hinv.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^HIP\\d{9}(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hinv.protein:$1" . + +bioregistry.resource:hinv.transcript a bioregistry.schema:resource ; + rdfs:label "H-InvDb Transcript" ; + rdfs:comment "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HIT000195363" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HINV.TRANSCRIPT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hinv.transcript" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hinv.transcript" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^HIT\\d{9}(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hinv.transcript:$1" . + +bioregistry.resource:hmdb a bioregistry.schema:resource ; + rdfs:label "Human Metabolome Database" ; + rdfs:comment "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HMDB00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HMDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hmdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2057" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hmdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^HMDB\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hmdb:$1" . + +bioregistry.resource:hms.lincs.compound a bioregistry.schema:resource ; + rdfs:label "HMS LINCS Compound" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10001-101" ; + bioregistry.schema:provider_formatter "https://lincs.hms.harvard.edu/db/sm/$1" . + +bioregistry.resource:hog a bioregistry.schema:resource ; + rdfs:label "Homologous Organ Groups" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "ftp://ftp.bgee.org/general/ontologies/HOG.obo" ; + bioregistry.schema:example "0000255" . + +bioregistry.resource:hogenom a bioregistry.schema:resource ; + rdfs:label "Database of Complete Genome Homologous Genes Families" ; + rdfs:comment "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HBG284870" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hogenom" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hogenom" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOGENOM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOGENOM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hogenom:$1" . + +bioregistry.resource:hom a bioregistry.schema:resource ; + rdfs:label "Homology Ontology" ; + rdfs:comment "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology." ; + foaf:homepage "https://github.com/BgeeDB/homology-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "bgee@sib.swiss" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hom" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/hom/terms?iri=http://purl.obolibrary.org/obo/HOM_$1" . + +bioregistry.resource:homd.seq a bioregistry.schema:resource ; + rdfs:label "HOMD Sequence Metainformation" ; + rdfs:comment "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SEQF1003" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOMD.SEQ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "homd.seq" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "homd.seq" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^SEQF\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/homd.seq:$1" . + +bioregistry.resource:homd.taxon a bioregistry.schema:resource ; + rdfs:label "HOMD Taxonomy" ; + rdfs:comment "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "811" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "homd.taxon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOMD.TAXON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "homd.taxon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/homd.taxon:$1" . + +bioregistry.resource:homologene a bioregistry.schema:resource ; + rdfs:label "HomoloGene" ; + rdfs:comment "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P593" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOMOLOGENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "homologene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "homologene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/homologene:$1" . + +bioregistry.resource:hovergen a bioregistry.schema:resource ; + rdfs:label "Homologous Vertebrate Genes Database" ; + rdfs:comment "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees." ; + foaf:homepage "https://pbil.univ-lyon1.fr/databases/hovergen.php" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HBG004341" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hovergen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HOVERGEN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hovergen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^HBG\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hovergen:$1" . + +bioregistry.resource:hp a bioregistry.schema:resource ; + rdfs:label "Human Phenotype Ontology" ; + rdfs:comment "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM." ; + foaf:homepage "http://www.human-phenotype-ontology.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/hp.obo" ; + bioregistry.schema:email "dr.sebastian.koehler@gmail.com" ; + bioregistry.schema:example "0011140" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3841" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^HP:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/HP:$1" . + +bioregistry.resource:hpa a bioregistry.schema:resource ; + rdfs:label "Human Protein Atlas tissue profile information" ; + rdfs:comment "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers." ; + foaf:homepage "http://www.proteinatlas.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ENSG00000026508" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^ENSG\\d{11}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hpa:$1" . + +bioregistry.resource:hpath a bioregistry.schema:resource ; + rdfs:label "Histopathology Ontology" ; + rdfs:comment "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species." ; + foaf:homepage "https://github.com/Novartis/hpath" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpath" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/hpath/terms?iri=http://purl.obolibrary.org/obo/HPATH_$1" . + +bioregistry.resource:hpm.peptide a bioregistry.schema:resource ; + rdfs:label "Human Proteome Map Peptide" ; + rdfs:comment "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "9606117" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpm.peptide" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HPM.PEPTIDE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpm.peptide" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hpm.peptide:$1" . + +bioregistry.resource:hpm.protein a bioregistry.schema:resource ; + rdfs:label "Human Proteome Map Protein" ; + rdfs:comment "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1968" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HPM.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpm.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpm.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hpm.protein:$1" . + +bioregistry.resource:hprd a bioregistry.schema:resource ; + rdfs:label "Human Protein Reference Database" ; + rdfs:comment "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hprd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HPRD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hprd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hprd:$1" . + +bioregistry.resource:hpscreg a bioregistry.schema:resource ; + rdfs:label "Human Pluripotent Stem Cell Registry" ; + rdfs:comment "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BCRTi001-A" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpscreg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hpscreg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hpscreg:$1" . + +bioregistry.resource:hsapdv a bioregistry.schema:resource ; + rdfs:label "Human Developmental Stages" ; + rdfs:comment "Life cycle stages for Human" ; + foaf:homepage "https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "bgee@sib.swiss" ; + bioregistry.schema:example "0000194" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HsapDv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HSAPDV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hsapdv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HSAPDV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HsapDv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/hsapdv/terms?iri=http://purl.obolibrary.org/obo/HSAPDV_$1" . + +bioregistry.resource:hsdb a bioregistry.schema:resource ; + rdfs:label "Hazardous Substances Data Bank" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5621" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2062" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] . + +bioregistry.resource:hso a bioregistry.schema:resource ; + rdfs:label "Health Surveillance Ontology" ; + rdfs:comment "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance." ; + foaf:homepage "https://w3id.org/hso" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "fernanda.dorea@sva.se" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hso" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HSO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HSO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/hso/terms?iri=http://purl.obolibrary.org/obo/HSO_$1" . + +bioregistry.resource:hssp a bioregistry.schema:resource ; + rdfs:label "Database of homology-derived secondary structure of proteins" ; + rdfs:comment "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "102l" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HSSP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hssp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HSSP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hssp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hssp:$1" . + +bioregistry.resource:htn a bioregistry.schema:resource ; + rdfs:label "Hypertension Ontology" ; + rdfs:comment "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines" ; + foaf:homepage "https://github.com/aellenhicks/htn_owl" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "aellenhicks@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HTN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "htn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HTN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/htn/terms?iri=http://purl.obolibrary.org/obo/HTN_$1" . + +bioregistry.resource:huge a bioregistry.schema:resource ; + rdfs:label "Human Unidentified Gene-Encoded" ; + rdfs:comment "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "KIAA0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "huge" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "huge" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HUGE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HUGE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^KIAA\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/huge:$1" . + +bioregistry.resource:iao a bioregistry.schema:resource ; + rdfs:label "Information Artifact Ontology" ; + rdfs:comment "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch." ; + foaf:homepage "https://github.com/information-artifact-ontology/IAO/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jiezheng@pennmedicine.upenn.edu" ; + bioregistry.schema:example "0000030" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/iao:$1" . + +bioregistry.resource:icd10 a bioregistry.schema:resource ; + rdfs:label "International Classification of Diseases" ; + rdfs:comment "The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C34" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICD10" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "icd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICD10" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P4229" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^[A-Z]\\d+(\\.[-\\d+])?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/icd:$1" . + +bioregistry.resource:icd11 a bioregistry.schema:resource ; + rdfs:label "International Classification of Diseases 11th Revision" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "RA01.0" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7807" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] . + +bioregistry.resource:icd9 a bioregistry.schema:resource ; + rdfs:label "International Classification of Diseases 9th Revision" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "277.9" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P493" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICD9CM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICD9" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:icdc a bioregistry.schema:resource ; + rdfs:label "Integrated Canine Data Commons" ; + rdfs:comment "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ICDC000101" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "icdc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^ICDC[0-9][0-9][0-9][0-9][0-9][0-9]$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/icdc:$1" . + +bioregistry.resource:icdo a bioregistry.schema:resource ; + rdfs:label "The International Classification of Diseases for Oncology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "M9861/3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P563" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] . + +bioregistry.resource:iceberg.element a bioregistry.schema:resource ; + rdfs:label "ICEberg element" ; + rdfs:comment "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "100" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iceberg.element" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICEBERG.ELEMENT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iceberg.element" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/iceberg.element:$1" . + +bioregistry.resource:iceberg.family a bioregistry.schema:resource ; + rdfs:label "ICEberg family" ; + rdfs:comment "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iceberg.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iceberg.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICEBERG.FAMILY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/iceberg.family:$1" . + +bioregistry.resource:iceo a bioregistry.schema:resource ; + rdfs:label "Integrative and Conjugative Element Ontology" ; + rdfs:comment "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning." ; + foaf:homepage "https://github.com/ontoice/ICEO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "liumeng94@sjtu.edu.cn" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iceo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_$1" . + +bioregistry.resource:ico a bioregistry.schema:resource ; + rdfs:label "Informed Consent Ontology" ; + rdfs:comment "The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field." ; + foaf:homepage "https://github.com/ICO-ontology/ICO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ico" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ICO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ico/terms?iri=http://purl.obolibrary.org/obo/ICO_$1" . + +bioregistry.resource:ideal a bioregistry.schema:resource ; + rdfs:label "Intrinsically Disordered proteins with Extensive Annotations and Literature" ; + rdfs:comment "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments." ; + foaf:homepage "https://www.ideal-db.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "IID00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ideal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDEAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDEAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ideal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^IID\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ideal:$1" . + +bioregistry.resource:ido a bioregistry.schema:resource ; + rdfs:label "Infectious Disease Ontology" ; + rdfs:comment "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases." ; + foaf:homepage "http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "Lindsay.Cowell@utsouthwestern.edu" ; + bioregistry.schema:example "0000504" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ido" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ido" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ido" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ido:$1" . + +bioregistry.resource:idocovid19 a bioregistry.schema:resource ; + rdfs:label "The COVID-19 Infectious Disease Ontology" ; + rdfs:comment "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease." ; + foaf:homepage "https://github.com/infectious-disease-ontology-extensions/ido-covid-19" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "johnbeverley2021@u.northwestern.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDO-COVID-19" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "idocovid19" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/idocovid19/terms?iri=http://purl.obolibrary.org/obo/IDOCOVID19_$1" . + +bioregistry.resource:idoden a bioregistry.schema:resource ; + rdfs:label "Dengue Fever Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDODEN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:idomal a bioregistry.schema:resource ; + rdfs:label "Malaria Ontology" ; + rdfs:comment "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it." ; + foaf:homepage "https://www.vectorbase.org/ontology-browser" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/idomal.obo" ; + bioregistry.schema:email "topalis@imbb.forth.gr" ; + bioregistry.schema:example "0002350" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDOMAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDOMAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDOMAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "idomal" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/idomal/terms?iri=http://purl.obolibrary.org/obo/IDOMAL_$1" . + +bioregistry.resource:idoo a bioregistry.schema:resource ; + rdfs:label "Identifiers.org Ontology" ; + rdfs:comment "Identifiers.org Ontology" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DataCollection" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "idoo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "idoo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[0-9a-zA-Z]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/idoo:$1" . + +bioregistry.resource:igsn a bioregistry.schema:resource ; + rdfs:label "International Geo Sample Number" ; + rdfs:comment "IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AU124" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "igsn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/igsn:$1" . + +bioregistry.resource:imdrf a bioregistry.schema:resource ; + rdfs:label "International Medical Device Regulators Forum" ; + rdfs:comment "None" ; + foaf:homepage "http://www.imdrf.org/" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:imex a bioregistry.schema:resource ; + rdfs:label "International Molecular Exchange" ; + rdfs:comment "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "IM-19210-3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMEX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "imex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "imex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^IM-\\d+(-?)(\\d+?)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/imex:$1" . + +bioregistry.resource:img.gene a bioregistry.schema:resource ; + rdfs:label "Integrated Microbial Genomes Gene" ; + rdfs:comment "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "638309541" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMG.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "img.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "img.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/img.gene:$1" . + +bioregistry.resource:img.taxon a bioregistry.schema:resource ; + rdfs:label "Integrated Microbial Genomes Taxon" ; + rdfs:comment "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "648028003" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "img.taxon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "img.taxon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMG.TAXON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/img.taxon:$1" . + +bioregistry.resource:imgt.hla a bioregistry.schema:resource ; + rdfs:label "IMGT/HLA human major histocompatibility complex sequence database" ; + rdfs:comment "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature." ; + foaf:homepage "http://www.ebi.ac.uk/imgt/hla" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "A*01:01:01:01" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMGT.HLA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "imgt.hla" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "imgt.hla" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMGT/HLA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMGT_HLA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^[A-Z0-9*:]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/imgt.hla:$1" . + +bioregistry.resource:imgt.ligm a bioregistry.schema:resource ; + rdfs:label "ImMunoGeneTics database covering immunoglobulins and T-cell receptors" ; + rdfs:comment "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates." ; + foaf:homepage "http://www.imgt.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "M94112" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "imgt.ligm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMGT/LIGM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMGT_LIGM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IMGT.LIGM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "imgt.ligm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^M\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/imgt.ligm:$1" . + +bioregistry.resource:inchi a bioregistry.schema:resource ; + rdfs:label "InChI" ; + rdfs:comment "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "inchi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "inchi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INCHI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P234" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/inchi:$1" . + +bioregistry.resource:inchikey a bioregistry.schema:resource ; + rdfs:label "InChIKey" ; + rdfs:comment "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "RYYVLZVUVIJVGH-UHFFFAOYSA-N" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "inchikey" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INCHIKEY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "inchikey" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P235" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])?" ; + bioregistry.schema:provider_formatter "https://identifiers.org/inchikey:$1" . + +bioregistry.resource:inn a bioregistry.schema:resource ; + rdfs:label "International Nonproprietary Names" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "fluticasone" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2275" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:provider_formatter "https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1" . + +bioregistry.resource:ino a bioregistry.schema:resource ; + rdfs:label "Interaction Network Ontology" ; + rdfs:comment "he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles." ; + foaf:homepage "https://github.com/INO-ontology/ino" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ino" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ino/terms?iri=http://purl.obolibrary.org/obo/INO_$1" . + +bioregistry.resource:insdc a bioregistry.schema:resource ; + rdfs:label "Nucleotide Sequence Database" ; + rdfs:comment "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "X58356" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INSDC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "insdc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "insdc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/insdc:$1" . + +bioregistry.resource:insdc.cds a bioregistry.schema:resource ; + rdfs:label "INSDC CDS" ; + rdfs:comment "The coding sequence or protein identifiers as maintained in INSDC." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AAA35559" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "insdc.cds" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "insdc.cds" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INSDC.CDS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/insdc.cds:$1" . + +bioregistry.resource:insdc.gca a bioregistry.schema:resource ; + rdfs:label "Genome assembly database" ; + rdfs:comment "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GCA_000155495.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "insdc.gca" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "insdc.gca" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INSDC.GCA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^GC[AF]_[0-9]{9}\\.[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/insdc.gca:$1" . + +bioregistry.resource:intact a bioregistry.schema:resource ; + rdfs:label "IntAct protein interaction database" ; + rdfs:comment "IntAct provides a freely available, open source database system and analysis tools for protein interaction data." ; + foaf:homepage "https://www.ebi.ac.uk/intact/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EBI-2307691" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INTACT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IntAct" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "intact" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "intact" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IntAct" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^EBI\\-[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/intact:$1" . + +bioregistry.resource:intact.molecule a bioregistry.schema:resource ; + rdfs:label "IntAct Molecule" ; + rdfs:comment "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EBI-366083" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "intact.molecule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "intact.molecule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INTACT.MOLECULE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^EBI\\-[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/intact.molecule:$1" . + +bioregistry.resource:interlex a bioregistry.schema:resource ; + rdfs:label "InterLex" ; + rdfs:comment "InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. " ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0101963" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ilx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ilx:$1" . + +bioregistry.resource:interpro a bioregistry.schema:resource ; + rdfs:label "InterPro database of protein domains and motifs" ; + rdfs:comment "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences." ; + foaf:homepage "http://www.ebi.ac.uk/interpro/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "IPR016380" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "interpro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "InterPro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "interpro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "InterPro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "InterPro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INTERPRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2926" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "interpro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:pattern "^IPR\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/interpro:$1" . + +bioregistry.resource:ird.segment a bioregistry.schema:resource ; + rdfs:label "IRD Segment Sequence" ; + rdfs:comment "Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CY077097" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ird.segment" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IRD.SEGMENT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ird.segment" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+(\\_)?\\d+(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ird.segment:$1" . + +bioregistry.resource:irefweb a bioregistry.schema:resource ; + rdfs:label "iRefWeb" ; + rdfs:comment "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "617102" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "irefweb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "irefweb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IREFWEB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/irefweb:$1" . + +bioregistry.resource:iro a bioregistry.schema:resource ; + rdfs:label "Insect Resistance Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:example "0000008" ; + bioregistry.schema:provider_formatter "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1" . + +bioregistry.resource:isbn a bioregistry.schema:resource ; + rdfs:label "International Standard Book Number" ; + rdfs:comment "The International Standard Book Number (ISBN) is for identifying printed books." ; + foaf:homepage "https://www.worldcat.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "9781584885658" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "isbn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ISBN-13" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "isbn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ISBN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "isbn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/isbn:$1" . + +bioregistry.resource:isfinder a bioregistry.schema:resource ; + rdfs:label "Insertion sequence elements database" ; + rdfs:comment "ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available." ; + foaf:homepage "http://www-is.biotoul.fr/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ISA1083-2" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ISFinder" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "isfinder" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ISFINDER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "isfinder" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^IS\\w+(\\-\\d)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/isfinder:$1" . + +bioregistry.resource:isni a bioregistry.schema:resource ; + rdfs:label "International Standard Name Identifier" ; + rdfs:comment """ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.\r +\r +The mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "000000012281955X" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "isni" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "isni" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "isni" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[0-9]{15}[0-9X]{1}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/isni:$1" . + +bioregistry.resource:issn a bioregistry.schema:resource ; + rdfs:label "International Standard Serial Number" ; + rdfs:comment "The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books." ; + foaf:homepage "http://www.issn.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0745-4570" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "issn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ISSN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "issn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ISSN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "issn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d{4}-\\d{3}[\\dX]$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/issn:$1" . + +bioregistry.resource:itis a bioregistry.schema:resource ; + rdfs:label "Integrated Taxonomic Information System" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "589462" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P815" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1" . + +bioregistry.resource:ito a bioregistry.schema:resource ; + rdfs:label "Intelligence Task Ontology" ; + rdfs:comment "The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ITO_01625" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ITO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ito" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^.+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ito:$1" . + +bioregistry.resource:iuphar.family a bioregistry.schema:resource ; + rdfs:label "IUPHAR family" ; + rdfs:comment "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "78" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iuphar.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iuphar.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IUPHAR.FAMILY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/iuphar.family:$1" . + +bioregistry.resource:iuphar.ligand a bioregistry.schema:resource ; + rdfs:label "IUPHAR ligand" ; + rdfs:comment "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1755" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GTOPDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iuphar.ligand" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iuphar.ligand" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P595" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IUPHAR.LIGAND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/iuphar.ligand:$1" . + +bioregistry.resource:iuphar.receptor a bioregistry.schema:resource ; + rdfs:label "International Union of Pharmacology" ; + rdfs:comment "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits." ; + foaf:homepage "http://www.iuphar.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "101" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P5458" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IUPHAR.RECEPTOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iuphar.receptor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "iuphar.receptor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IUPHAR_RECEPTOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/iuphar.receptor:$1" . + +bioregistry.resource:jax a bioregistry.schema:resource ; + rdfs:label "Jackson Laboratories Strain" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "004435" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JAX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.jax.org/strain/$1" . + +bioregistry.resource:jaxmice a bioregistry.schema:resource ; + rdfs:label "JAX Mice" ; + rdfs:comment "JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "005012" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JAXMICE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jaxmice" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jaxmice" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/jaxmice:$1" . + +bioregistry.resource:jcggdb a bioregistry.schema:resource ; + rdfs:label "Japan Consortium for Glycobiology and Glycotechnology Database" ; + rdfs:comment "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "JCGG-STR008690" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jcggdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JCGGDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jcggdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^JCGG-STR\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/jcggdb:$1" . + +bioregistry.resource:jcm a bioregistry.schema:resource ; + rdfs:label "Japan Collection of Microorganisms" ; + rdfs:comment "The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2." ; + foaf:homepage "http://www.jcm.riken.go.jp/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "17254" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jcm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jcm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JCM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JCM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/jcm:$1" . + +bioregistry.resource:jcsd a bioregistry.schema:resource ; + rdfs:label "Japan Chemical Substance Dictionary" ; + rdfs:comment "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "J55.713G" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jcsd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jcsd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JCSD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/jcsd:$1" . + +bioregistry.resource:jstor a bioregistry.schema:resource ; + rdfs:label "Digital archive of scholarly articles" ; + rdfs:comment "JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration." ; + foaf:homepage "https://www.jstor.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3075966" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jstor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JSTOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jstor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JSTOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/jstor:$1" . + +bioregistry.resource:jws a bioregistry.schema:resource ; + rdfs:label "JWS Online" ; + rdfs:comment "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "curien" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jws" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "JWS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "jws" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/jws:$1" . + +bioregistry.resource:kaggle a bioregistry.schema:resource ; + rdfs:label "Kaggle" ; + rdfs:comment "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "nasa/kepler-exoplanet-search-results" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kaggle" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kaggle" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kaggle:$1" . + +bioregistry.resource:kegg.compound a bioregistry.schema:resource ; + rdfs:label "KEGG Compound" ; + rdfs:comment "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C12345" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P665" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.COMPOUND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^C\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.compound:$1" . + +bioregistry.resource:kegg.disease a bioregistry.schema:resource ; + rdfs:label "KEGG Disease" ; + rdfs:comment "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "H00076" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.disease" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.DISEASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.disease" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^H\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.disease:$1" . + +bioregistry.resource:kegg.drug a bioregistry.schema:resource ; + rdfs:label "KEGG Drug" ; + rdfs:comment "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "D00123" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.drug" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.DRUG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.drug" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P665" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^D\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.drug:$1" . + +bioregistry.resource:kegg.environ a bioregistry.schema:resource ; + rdfs:label "KEGG Environ" ; + rdfs:comment "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ev:E00032" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.ENVIRON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.environ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.environ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^(ev\\:)?E\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.environ:$1" . + +bioregistry.resource:kegg.enzyme a bioregistry.schema:resource ; + rdfs:label "KEGG Enzyme" ; + rdfs:comment "None" ; + foaf:homepage "http://www.genome.jp/dbget-bin/www_bfind?enzyme" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG_ENZYME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.ENZYME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:part_of bioregistry.resource:kegg . + +bioregistry.resource:kegg.genes a bioregistry.schema:resource ; + rdfs:label "KEGG Genes" ; + rdfs:comment "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "bsu:BSU01340" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.GENES" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.genes" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.genes" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P665" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^\\w+:[\\w\\d\\.-]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.genes:$1" . + +bioregistry.resource:kegg.genome a bioregistry.schema:resource ; + rdfs:label "KEGG Genome" ; + rdfs:comment "KEGG Genome is a collection of organisms whose genomes have been completely sequenced." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "T06648" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P665" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.genome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.GENOME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.genome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^(T0\\d+|\\w{3,5})$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.genome:$1" . + +bioregistry.resource:kegg.glycan a bioregistry.schema:resource ; + rdfs:label "KEGG Glycan" ; + rdfs:comment "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "G00123" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.glycan" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.GLYCAN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.glycan" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^G\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.glycan:$1" . + +bioregistry.resource:kegg.ligand a bioregistry.schema:resource ; + rdfs:label "KEGG LIGAND" ; + rdfs:comment "None" ; + foaf:homepage "http://www.genome.ad.jp/kegg/docs/upd_ligand.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG_LIGAND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:part_of bioregistry.resource:kegg . + +bioregistry.resource:kegg.metagenome a bioregistry.schema:resource ; + rdfs:label "KEGG Metagenome" ; + rdfs:comment "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "T30002" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.metagenome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.metagenome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.METAGENOME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^T3\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.metagenome:$1" . + +bioregistry.resource:kegg.module a bioregistry.schema:resource ; + rdfs:label "KEGG Module" ; + rdfs:comment "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "M00002" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.MODULE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.module" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.module" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^([a-z]{3,5}_)?M\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.module:$1" . + +bioregistry.resource:kegg.orthology a bioregistry.schema:resource ; + rdfs:label "KEGG Orthology" ; + rdfs:comment "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "K00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.orthology" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.ORTHOLOGY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.orthology" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^K\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.orthology:$1" . + +bioregistry.resource:kegg.pathway a bioregistry.schema:resource ; + rdfs:label "KEGG Pathways Database" ; + rdfs:comment "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks." ; + foaf:homepage "http://www.genome.jp/kegg/pathway.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "rsk00410" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG_PATHWAY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG-path" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P665" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^\\w{2,4}\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.pathway:$1" . + +bioregistry.resource:kegg.reaction a bioregistry.schema:resource ; + rdfs:label "KEGG Reaction Database" ; + rdfs:comment "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life." ; + foaf:homepage "http://www.genome.jp/kegg/reaction/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "R00100" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P665" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG.REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG_REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:part_of bioregistry.resource:kegg ; + bioregistry.schema:pattern "^R\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg.reaction:$1" . + +bioregistry.resource:knapsack a bioregistry.schema:resource ; + rdfs:label "KNApSAcK" ; + rdfs:comment """KNApSAcK provides information on metabolites and the +taxonomic class with which they are associated.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C00000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "knapsack" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2064" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "knapsack" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KNAPSACK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^C\\d{8}" ; + bioregistry.schema:provider_formatter "https://identifiers.org/knapsack:$1" . + +bioregistry.resource:kupo a bioregistry.schema:resource ; + rdfs:label "Kidney and Urinary Pathway Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:labo a bioregistry.schema:resource ; + rdfs:label "clinical LABoratory Ontology" ; + rdfs:comment "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents." ; + foaf:homepage "https://github.com/OpenLHS/LABO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "paul.fabry@usherbrooke.ca" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LABO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LABO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "labo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/labo/terms?iri=http://purl.obolibrary.org/obo/LABO_$1" . + +bioregistry.resource:lbo a bioregistry.schema:resource ; + rdfs:label "Livestock Breed Ontology" ; + rdfs:comment "A vocabulary for cattle, chicken, horse, pig, and sheep breeds." ; + foaf:homepage "http://bioportal.bioontology.org/ontologies/LBO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jreecy@iastate.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lbo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/lbo/terms?iri=http://purl.obolibrary.org/obo/LBO_$1" . + +bioregistry.resource:lei a bioregistry.schema:resource ; + rdfs:label "Global LEI Index" ; + rdfs:comment "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HWUPKR0MPOU8FGXBT394" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lei" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lei" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lei:$1" . + +bioregistry.resource:lgic a bioregistry.schema:resource ; + rdfs:label "Ligand-Gated Ion Channel database" ; + rdfs:comment "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5HT3Arano" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LGIC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lgic" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lgic" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lgic:$1" . + +bioregistry.resource:licebase a bioregistry.schema:resource ; + rdfs:label "LiceBase" ; + rdfs:comment "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EMLSAT00000003403" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "licebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LICEBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "licebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Za-z0-9\\-\\/]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/licebase:$1" . + +bioregistry.resource:ligandbook a bioregistry.schema:resource ; + rdfs:label "LigandBook" ; + rdfs:comment "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "785" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ligandbook" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ligandbook" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ligandbook:$1" . + +bioregistry.resource:ligandbox a bioregistry.schema:resource ; + rdfs:label "LigandBox" ; + rdfs:comment "LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "D00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ligandbox" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ligandbox" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LIGANDBOX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ligandbox:$1" . + +bioregistry.resource:ligandexpo a bioregistry.schema:resource ; + rdfs:label "Ligand Expo" ; + rdfs:comment "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ABC" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LIGANDEXPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ligandexpo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ligandexpo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^(\\w){3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ligandexpo:$1" . + +bioregistry.resource:lincs.cell a bioregistry.schema:resource ; + rdfs:label "LINCS Cell" ; + rdfs:comment "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LCL-2085" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LINCS.CELL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lincs.cell" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lincs.cell" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "(^LCL-\\d+$)|(^LDC-\\d+$)|(^ES-\\d+$)|(^LSC-\\d+$)|(^LPC-\\d+$)" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lincs.cell:$1" . + +bioregistry.resource:lincs.data a bioregistry.schema:resource ; + rdfs:label "LINCS Data" ; + rdfs:comment "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LDS-1110" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lincs.data" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LINCS.DATA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lincs.data" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[EL]D[SG]-\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lincs.data:$1" . + +bioregistry.resource:lincs.protein a bioregistry.schema:resource ; + rdfs:label "LINCS Protein" ; + rdfs:comment "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "200282" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lincs.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lincs.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LINCS.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lincs.protein:$1" . + +bioregistry.resource:lincs.smallmolecule a bioregistry.schema:resource ; + rdfs:label "LINCS Small Molecule" ; + rdfs:comment "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LSM-6306" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lincs.smallmolecule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lincs.smallmolecule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LINCS.SMALLMOLECULE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^LSM-\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lincs.smallmolecule:$1" . + +bioregistry.resource:lipidbank a bioregistry.schema:resource ; + rdfs:label "LipidBank" ; + rdfs:comment "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BBA0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lipidbank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LIPIDBANK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lipidbank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lipidbank:$1" . + +bioregistry.resource:lipidmaps a bioregistry.schema:resource ; + rdfs:label "LIPID MAPS" ; + rdfs:comment "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LMPR0102010012" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lipidmaps" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LIPIDMAPS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2063" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lipidmaps" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lipidmaps:$1" . + +bioregistry.resource:lncipedia a bioregistry.schema:resource ; + rdfs:label "LNCipedia" ; + rdfs:comment "A comprehensive compendium of human long non-coding RNAs" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SNHG3" . + +bioregistry.resource:loinc a bioregistry.schema:resource ; + rdfs:label "Logical Observation Identifiers Names and Codes" ; + rdfs:comment "None" ; + foaf:homepage "https://loinc.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LL379-9" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LOINC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LOINC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:provider_formatter "https://loinc.org/$1/" . + +bioregistry.resource:lrg a bioregistry.schema:resource ; + rdfs:label "Locus Reference Genomic" ; + rdfs:comment "A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LRG_1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lrg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "LRG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "lrg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^LRG_\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/lrg:$1" . + +bioregistry.resource:lspci a bioregistry.schema:resource ; + rdfs:label "Laboratory of Systems Pharmacology Compound ID" ; + rdfs:comment "None" ; + foaf:homepage "https://labsyspharm.shinyapps.io/smallmoleculesuite/" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:ma a bioregistry.schema:resource ; + rdfs:label "Mouse adult gross anatomy" ; + rdfs:comment "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)" ; + foaf:homepage "https://github.com/obophenotype/mouse-anatomy-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0002502" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^MA:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MA:$1" . + +bioregistry.resource:macie a bioregistry.schema:resource ; + rdfs:label "Mechanism, Annotation and Classification in Enzymes" ; + rdfs:comment "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "M0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MACIE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "macie" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "macie" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^M\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/macie:$1" . + +bioregistry.resource:maizegdb.locus a bioregistry.schema:resource ; + rdfs:label "MaizeGDB Locus" ; + rdfs:comment "MaizeGDB is the maize research community's central repository for genetics and genomics information." ; 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It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P00747__P07355" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MATRIXDB.ASSOCIATION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "matrixdb.association" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "matrixdb.association" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/matrixdb.association:$1" . + +bioregistry.resource:maxo a bioregistry.schema:resource ; + rdfs:label "Medical Action Ontology" ; + rdfs:comment "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations." ; + foaf:homepage "https://github.com/monarch-initiative/MAxO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "Leigh.Carmody@jax.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MAXO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MAXO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "maxo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/maxo/terms?iri=http://purl.obolibrary.org/obo/MAXO_$1" . + +bioregistry.resource:mcc a bioregistry.schema:resource ; + rdfs:label "Cell Line Ontology [derivative]" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MCCL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:mco a bioregistry.schema:resource ; + rdfs:label "Microbial Conditions Ontology" ; + rdfs:comment "Microbial Conditions Ontology is an ontology..." ; + foaf:homepage "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "citlalli.mejiaalmonte@gmail.com" ; + bioregistry.schema:example "0000858" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mco/terms?iri=http://purl.obolibrary.org/obo/MCO_$1" . + +bioregistry.resource:mdm a bioregistry.schema:resource ; + rdfs:label "Medical Data Models" ; + rdfs:comment "The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4776" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MDM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mdm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mdm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mdm:$1" . + +bioregistry.resource:meddra a bioregistry.schema:resource ; + rdfs:label "Medical Dictionary for Regulatory Activities Terminology" ; + rdfs:comment "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10015919" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEDDRA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEDDRA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3201" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "meddra" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "meddra" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/meddra:$1" . + +bioregistry.resource:medgen a bioregistry.schema:resource ; + rdfs:label "Human Medical Genetics" ; + rdfs:comment "MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder." ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/medgen" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "760050" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "medgen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "medgen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MedGen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "medgen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MedGen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ] ; + bioregistry.schema:pattern "^[CN]*\\d{4,7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/medgen:$1" . + +bioregistry.resource:medlineplus a bioregistry.schema:resource ; + rdfs:label "MedlinePlus Health Topics" ; + rdfs:comment "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "002804" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "medlineplus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEDLINEPLUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEDLINEPLUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "medlineplus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/medlineplus:$1" . + +bioregistry.resource:merops a bioregistry.schema:resource ; + rdfs:label "MEROPS peptidase database" ; + rdfs:comment "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them." ; + foaf:homepage "https://www.ebi.ac.uk/merops/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "S01.001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEROPS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "merops" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEROPS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEROPS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "merops" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[SCTAGMNU]\\d{2}\\.([AB]\\d{2}|\\d{3})$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/merops:$1" . + +bioregistry.resource:merops.family a bioregistry.schema:resource ; + rdfs:label "MEROPS Family" ; + rdfs:comment "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "S1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "merops.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEROPS.FAMILY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "merops.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[SCTAGMNU]\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/merops.family:$1" . + +bioregistry.resource:merops.inhibitor a bioregistry.schema:resource ; + rdfs:label "MEROPS Inhibitor" ; + rdfs:comment "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "I31.952" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "merops.inhibitor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEROPS.INHIBITOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "merops.inhibitor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^I\\d{2}\\.\\d{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/merops.inhibitor:$1" . + +bioregistry.resource:mesh.2012 a bioregistry.schema:resource ; + rdfs:label "MeSH 2012" ; + rdfs:comment "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "17186" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mesh.2012" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mesh.2012" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MESH.2012" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mesh.2012:$1" . + +bioregistry.resource:mesh.2013 a bioregistry.schema:resource ; + rdfs:label "MeSH 2013" ; + rdfs:comment "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "17165" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MESH.2013" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mesh.2013" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mesh.2013" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mesh.2013:$1" . + +bioregistry.resource:metabolights a bioregistry.schema:resource ; + rdfs:label "MetaboLights" ; + rdfs:comment "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MTBLS1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metabolights" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "METABOLIGHTS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metabolights" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3890" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^MTBLS\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/metabolights:$1" . + +bioregistry.resource:metacyc.compound a bioregistry.schema:resource ; + rdfs:label "Metabolic Encyclopedia of metabolic and other pathways" ; + rdfs:comment "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway." ; + foaf:homepage "http://metacyc.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CPD-10330" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "METACYC.COMPOUND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metacyc.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metacyc.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MetaCyc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MetaCyc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^[A-Za-z0-9+_.%-:]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/metacyc.compound:$1" . + +bioregistry.resource:metacyc.reaction a bioregistry.schema:resource ; + rdfs:label "MetaCyc Reaction" ; + rdfs:comment "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "RXN-14904" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "METACYC.REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metacyc.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metacyc.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z0-9+_.%-:]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/metacyc.reaction:$1" . + +bioregistry.resource:metanetx.chemical a bioregistry.schema:resource ; + rdfs:label "MetaNetX chemical" ; + rdfs:comment "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MNXM1723" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metanetx.chemical" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "METANETX.CHEMICAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metanetx.chemical" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(MNXM\\d+|BIOMASS|WATER)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/metanetx.chemical:$1" . + +bioregistry.resource:metanetx.compartment a bioregistry.schema:resource ; + rdfs:label "MetaNetX compartment" ; + rdfs:comment "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MNXC15" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metanetx.compartment" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metanetx.compartment" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "METANETX.COMPARTMENT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/metanetx.compartment:$1" . + +bioregistry.resource:metanetx.reaction a bioregistry.schema:resource ; + rdfs:label "MetaNetX reaction" ; + rdfs:comment "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MNXR101574" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metanetx.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metanetx.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "METANETX.REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^(MNXR\\d+|EMPTY)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/metanetx.reaction:$1" . + +bioregistry.resource:metlin a bioregistry.schema:resource ; + rdfs:label "Metabolite and Tandem Mass Spectrometry Database" ; + rdfs:comment "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1455" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metlin" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "metlin" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "METLIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/metlin:$1" . + +bioregistry.resource:mex a bioregistry.schema:resource ; + rdfs:label "Metabolome Express" ; + rdfs:comment "A public place to process, interpret and share GC/MS metabolomics datasets." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "36" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MEX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mex:$1" . + +bioregistry.resource:mf a bioregistry.schema:resource ; + rdfs:label "Mental Functioning Ontology" ; + rdfs:comment "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning." ; + foaf:homepage "https://github.com/jannahastings/mental-functioning-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "janna.hastings@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mf/terms?iri=http://purl.obolibrary.org/obo/MF_$1" . + +bioregistry.resource:mfmo a bioregistry.schema:resource ; + rdfs:label "Mammalian Feeding Muscle Ontology" ; + rdfs:comment "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors." ; + foaf:homepage "https://github.com/rdruzinsky/feedontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "druzinsk@uic.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mfmo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mfmo/terms?iri=http://purl.obolibrary.org/obo/MFMO_$1" . + +bioregistry.resource:mfo a bioregistry.schema:resource ; + rdfs:label "Medaka fish anatomy and development" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "Thorsten.Henrich@embl-heidelberg.de" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:mfoem a bioregistry.schema:resource ; + rdfs:label "Emotion Ontology" ; + rdfs:comment "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings." ; + foaf:homepage "https://github.com/jannahastings/emotion-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "janna.hastings@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFOEM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFOEM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFOEM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mfoem" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mfoem/terms?iri=http://purl.obolibrary.org/obo/MFOEM_$1" . + +bioregistry.resource:mfomd a bioregistry.schema:resource ; + rdfs:label "Mental Disease Ontology" ; + rdfs:comment "The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF)." ; + foaf:homepage "https://github.com/jannahastings/mental-functioning-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "janna.hastings@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFOMD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFOMD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MFOMD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mfomd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mfomd/terms?iri=http://purl.obolibrary.org/obo/MFOMD_$1" . + +bioregistry.resource:mge a bioregistry.schema:resource ; + rdfs:label "Aclame" ; + rdfs:comment "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mge" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mge" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^mge:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MGE:$1" . + +bioregistry.resource:mgi a bioregistry.schema:resource ; + rdfs:label "Mouse Genome Informatics" ; + rdfs:comment "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data." ; + foaf:homepage "http://www.informatics.jax.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "6017782" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MGI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MGI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mgi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mgi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MGI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MGI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P671" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^MGI:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MGI:$1" . + +bioregistry.resource:mgnify.proj a bioregistry.schema:resource ; + rdfs:label "MGnify Project" ; + rdfs:comment "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ERP004492" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mgnify.proj" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mgnify.proj" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Z]+[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mgnify.proj:$1" . + +bioregistry.resource:mgnify.samp a bioregistry.schema:resource ; + rdfs:label "MGnify Sample" ; + rdfs:comment "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SRS086444" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mgnify.samp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mgnify.samp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Z]+[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mgnify.samp:$1" . + +bioregistry.resource:mi a bioregistry.schema:resource ; + rdfs:label "Molecular Interactions Controlled Vocabulary" ; + rdfs:comment "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative." ; + foaf:homepage "https://github.com/HUPO-PSI/psi-mi-CV" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "pporras@ebi.ac.uk" ; + bioregistry.schema:example "0058" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSI-MI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "psimi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^MI:\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MI:$1" . + +bioregistry.resource:miaa a bioregistry.schema:resource ; + rdfs:label "Minimal Information About Anatomy ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:miapa a bioregistry.schema:resource ; + rdfs:label "MIAPA Ontology" ; + rdfs:comment """The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies. + +This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA.""" ; + foaf:homepage "http://www.evoio.org/wiki/MIAPA" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "hilmar.lapp@duke.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIAPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIAPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "miapa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIAPA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_$1" . + +bioregistry.resource:micro a bioregistry.schema:resource ; + rdfs:label "Ontology of Prokaryotic Phenotypic and Metabolic Characters" ; + rdfs:comment "An ontology of prokaryotic phenotypic and metabolic characters" ; + foaf:homepage "https://github.com/carrineblank/MicrO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "carrine.blank@umontana.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MICRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "micro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MICRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_$1" . + +bioregistry.resource:microscope a bioregistry.schema:resource ; + rdfs:label "MicroScope" ; + rdfs:comment "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5601141" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MICROSCOPE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "microscope" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "microscope" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/microscope:$1" . + +bioregistry.resource:microsporidia a bioregistry.schema:resource ; + rdfs:label "MicrosporidiaDB" ; + rdfs:comment "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ECU03_0820i" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "microsporidia" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MICROSPORIDIA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "microsporidia" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/microsporidia:$1" . + +bioregistry.resource:mim a bioregistry.schema:resource ; + rdfs:label "Mendelian Inheritance in Man" ; + rdfs:comment "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders." ; + foaf:homepage "https://omim.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "603903" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mim" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mim" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P492" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^[*#+%^]?\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mim:$1" . + +bioregistry.resource:mimodb a bioregistry.schema:resource ; + rdfs:label "MimoDB" ; + rdfs:comment "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mimodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mimodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIMODB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mimodb:$1" . + +bioregistry.resource:minid a bioregistry.schema:resource ; + rdfs:label "Minimal Viable Identifier" ; + rdfs:comment "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "b97957" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "minid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "minid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MINID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/minid:$1" . + +bioregistry.resource:minid.test a bioregistry.schema:resource ; + rdfs:label "MINID Test" ; + rdfs:comment "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. " ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3SBPLMKKVEVR" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "minid.test" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/minid.test:$1" . + +bioregistry.resource:mint a bioregistry.schema:resource ; + rdfs:label "Molecular Interaction Database" ; + rdfs:comment "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MINT-10000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MINT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mint" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MINT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mint" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^MINT\\-\\d{1,7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mint:$1" . + +bioregistry.resource:mipmod a bioregistry.schema:resource ; + rdfs:label "MIPModDB" ; + rdfs:comment "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HOSAPI0399" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mipmod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mipmod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIPMOD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mipmod:$1" . + +bioregistry.resource:mir a bioregistry.schema:resource ; + rdfs:label "Identifiers.org Registry" ; + rdfs:comment "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "00100037" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mir" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mir" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^MIR:\\d{8}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MIR:$1" . + +bioregistry.resource:mirbase a bioregistry.schema:resource ; + rdfs:label "miRNA Database" ; + rdfs:comment "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR)." ; + foaf:homepage "http://www.mirbase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MI0026471" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "miRBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2870" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "MI\\d{7}" ; + bioregistry.schema:provider_formatter "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1" . + +bioregistry.resource:mirbase.family a bioregistry.schema:resource ; + rdfs:label "miRBase Families" ; + rdfs:comment "None" ; + foaf:homepage "http://www.mirbase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MIPF0000002" ; + bioregistry.schema:provider_formatter "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1" . + +bioregistry.resource:mirbase.mature a bioregistry.schema:resource ; + rdfs:label "miRBase mature sequence" ; + rdfs:comment "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence." ; + foaf:homepage "http://www.mirbase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MIMAT0046872" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirbase.mature" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRBASE.MATURE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirbase.mature" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2871" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "MIMAT\\d{7}" ; + bioregistry.schema:provider_formatter "http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1" . + +bioregistry.resource:mirex a bioregistry.schema:resource ; + rdfs:label "mirEX" ; + rdfs:comment "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "165a" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIREX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+(\\w+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mirex:$1" . + +bioregistry.resource:miriam.collection a bioregistry.schema:resource ; + rdfs:label "MIRIAM Registry collection" ; + rdfs:comment "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:example "MIR:00000008" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRIAM.COLLECTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "miriam.collection" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "miriam.collection" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^MIR:000\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/miriam.collection:$1" . + +bioregistry.resource:miriam.resource a bioregistry.schema:resource ; + rdfs:label "MIRIAM Registry resource" ; + rdfs:comment "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MIR:00100005" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRIAM.RESOURCE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "miriam.resource" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "miriam.resource" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^MIR:001\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/miriam.resource:$1" . + +bioregistry.resource:mirnest a bioregistry.schema:resource ; + rdfs:label "miRNEST" ; + rdfs:comment "miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MNEST029358" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirnest" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirnest" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRNEST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^MNEST\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mirnest:$1" . + +bioregistry.resource:miro a bioregistry.schema:resource ; + rdfs:label "Mosquito insecticide resistance" ; + rdfs:comment "Application ontology for entities related to insecticide resistance in mosquitos" ; + foaf:homepage "http://anobase.vectorbase.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/miro.obo" ; + bioregistry.schema:email "louis@imbb.forth.gr" ; + bioregistry.schema:example "40000617" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "miro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{8}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/miro/terms?iri=http://purl.obolibrary.org/obo/MIRO_$1" . + +bioregistry.resource:mirtarbase a bioregistry.schema:resource ; + rdfs:label "miRTarBase" ; + rdfs:comment "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MIRT000002" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirtarbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mirtarbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MIRTARBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^MIRT\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mirtarbase:$1" . + +bioregistry.resource:mirte a bioregistry.schema:resource ; + rdfs:label "miRNA Target Prediction at EMBL" ; + rdfs:comment "None" ; + foaf:homepage "http://www.russelllab.org/miRNAs/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "miR-1" . + +bioregistry.resource:mmdb a bioregistry.schema:resource ; + rdfs:label "Molecular Modeling Database" ; + rdfs:comment "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "50885" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d{1,5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mmdb:$1" . + +bioregistry.resource:mmmp.biomaps a bioregistry.schema:resource ; + rdfs:label "Melanoma Molecular Map Project Biomaps" ; + rdfs:comment "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "37" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biomaps" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmmp:biomaps" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMMP:BIOMAPS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mmmp:biomaps:$1" . + +bioregistry.resource:mmo a bioregistry.schema:resource ; + rdfs:label "Measurement method ontology" ; + rdfs:comment "A representation of the variety of methods used to make clinical and phenotype measurements. " ; + foaf:homepage "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jrsmith@mcw.edu" ; + bioregistry.schema:example "0000574" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mmo/terms?iri=http://purl.obolibrary.org/obo/MMO_$1" . + +bioregistry.resource:mmp.cat a bioregistry.schema:resource ; + rdfs:label "MarCat" ; + rdfs:comment "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MMP743597.11" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMP.CAT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmp.cat" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmp.cat" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^MMP\\d+.\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mmp.cat:$1" . + +bioregistry.resource:mmp.db a bioregistry.schema:resource ; + rdfs:label "MarDB" ; + rdfs:comment "MarDB includes all sequenced marine microbial genomes regardless of level of completeness." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MMP02954345.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMP.DB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmp.db" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmp.db" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^MMP\\d+.\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mmp.db:$1" . + +bioregistry.resource:mmp.fun a bioregistry.schema:resource ; + rdfs:label "MarFun" ; + rdfs:comment "MarFun is manually curated database for marine fungi which is a part of the MAR databases." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MMP3888430" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmp.fun" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^MMP\\d+.\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mmp.fun:$1" . + +bioregistry.resource:mmp.ref a bioregistry.schema:resource ; + rdfs:label "MarRef" ; + rdfs:comment "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MMP3312982.2" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmp.ref" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMP.REF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmp.ref" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^MMP\\d+.\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mmp.ref:$1" . + +bioregistry.resource:mmrrc a bioregistry.schema:resource ; + rdfs:label "Mutant Mouse Resource and Research Centers" ; + rdfs:comment "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections." ; + foaf:homepage "https://www.mmrrc.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "70" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmrrc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMRRC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmrrc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mmrrc:$1" . + +bioregistry.resource:mmsl a bioregistry.schema:resource ; + rdfs:label "Multum MediSource Lexicon" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3355" . + +bioregistry.resource:mmusdv a bioregistry.schema:resource ; + rdfs:label "Mouse Developmental Stages" ; + rdfs:comment "Life cycle stages for Mus Musculus" ; + foaf:homepage "https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "bgee@sib.swiss" ; + bioregistry.schema:example "0000066" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MmusDv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMUSDV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MMUSDV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mmusdv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mmusdv/terms?iri=http://purl.obolibrary.org/obo/MMUSDV_$1" . + +bioregistry.resource:mo a bioregistry.schema:resource ; + rdfs:label "Microarray experimental conditions" ; + rdfs:comment "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data." ; + foaf:homepage "http://mged.sourceforge.net/ontologies/MGEDontology.php" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "stoeckrt@pcbi.upenn.edu" ; + bioregistry.schema:example "ArrayGroup" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mo:$1" . + +bioregistry.resource:mobidb a bioregistry.schema:resource ; + rdfs:label "MobiDB" ; + rdfs:comment "MobiDB is a database of protein disorder and mobility annotations." ; + foaf:homepage "http://mobidb.bio.unipd.it" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P10636" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mobidb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MOBIDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mobidb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MobiDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mobidb:$1" . + +bioregistry.resource:mod a bioregistry.schema:resource ; + rdfs:label "Protein modification" ; + rdfs:comment "The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications." ; + foaf:homepage "http://www.psidev.info/MOD" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "pierre-alain.binz@chuv.ch" ; + bioregistry.schema:example "01467" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MOD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MOD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSI-MOD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSIMOD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^MOD:\\d{5}" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MOD:$1" . + +bioregistry.resource:modeldb a bioregistry.schema:resource ; + rdfs:label "ModelDB" ; + rdfs:comment "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "45539" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MODELDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "modeldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "modeldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/modeldb:$1" . + +bioregistry.resource:molbase a bioregistry.schema:resource ; + rdfs:label "Molbase" ; + rdfs:comment "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "128796-39-4" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "molbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "molbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MOLBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/molbase:$1" . + +bioregistry.resource:molmedb a bioregistry.schema:resource ; + rdfs:label "MolMeDB" ; + rdfs:comment "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. " ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MM00040" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "molmedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[m,M]{2}[0-9]{5}[0-9]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/molmedb:$1" . + +bioregistry.resource:mondo a bioregistry.schema:resource ; + rdfs:label "Monarch Disease Ontology" ; + rdfs:comment "A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology." ; + foaf:homepage "https://monarch-initiative.github.io/mondo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/mondo.obo" ; + bioregistry.schema:email "vasilevs@ohsu.edu" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MONDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MONDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mondo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MONDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P5270" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mondo/terms?iri=http://purl.obolibrary.org/obo/MONDO_$1" . + +bioregistry.resource:mop a bioregistry.schema:resource ; + rdfs:label "Molecular Process Ontology" ; + rdfs:comment "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation." ; + foaf:homepage "https://github.com/rsc-ontologies/rxno" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo" ; + bioregistry.schema:email "batchelorc@rsc.org" ; + bioregistry.schema:example "0000079" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mop" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MOP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MOP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MOP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mop/terms?iri=http://purl.obolibrary.org/obo/MOP_$1" . + +bioregistry.resource:morpheus a bioregistry.schema:resource ; + rdfs:label "Morpheus model repository" ; + rdfs:comment """The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software. +""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "M0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "morpheus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^M[0-9]{4,}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/morpheus:$1" . + +bioregistry.resource:mp a bioregistry.schema:resource ; + rdfs:label "Mammalian Phenotype Ontology" ; + rdfs:comment "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways." ; + foaf:homepage "http://www.informatics.jax.org/searches/MP_form.shtml" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "pheno@jax.org" ; + bioregistry.schema:example "0005452" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^MP:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MP:$1" . + +bioregistry.resource:mpath a bioregistry.schema:resource ; + rdfs:label "Mouse pathology ontology" ; + rdfs:comment "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes" ; + foaf:homepage "http://www.pathbase.net" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo" ; + bioregistry.schema:email "pns12@hermes.cam.ac.uk" ; + bioregistry.schema:example "728" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MPATH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MPATH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MPATH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mpath" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mpath/terms?iri=http://purl.obolibrary.org/obo/MPATH_$1" . + +bioregistry.resource:mpid a bioregistry.schema:resource ; + rdfs:label "Microbial Protein Interaction Database" ; + rdfs:comment "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "172" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mpid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MPID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mpid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mpid:$1" . + +bioregistry.resource:mpio a bioregistry.schema:resource ; + rdfs:label "Minimum PDDI Information Ontology" ; + rdfs:comment "An ontology of minimum information regarding potential drug-drug interaction information." ; + foaf:homepage "https://github.com/MPIO-Developers/MPIO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mbrochhausen@uams.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MPIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mpio" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MPIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MPIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mpio/terms?iri=http://purl.obolibrary.org/obo/MPIO_$1" . + +bioregistry.resource:mro a bioregistry.schema:resource ; + rdfs:label "MHC Restriction Ontology" ; + rdfs:comment "The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions." ; + foaf:homepage "https://github.com/IEDB/MRO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "bpeters@lji.org" ; + bioregistry.schema:example "0000634" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/mro/terms?iri=http://purl.obolibrary.org/obo/MRO_$1" . + +bioregistry.resource:ms a bioregistry.schema:resource ; + rdfs:label "Mass spectrometry ontology" ; + rdfs:comment "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance." ; + foaf:homepage "http://www.psidev.info/groups/controlled-vocabularies" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "gerhard.mayer@rub.de" ; + bioregistry.schema:example "1000560" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^MS:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MS:$1" . + +bioregistry.resource:msigdb a bioregistry.schema:resource ; + rdfs:label "Molecular Signatures Database" ; + rdfs:comment "None" ; + foaf:homepage "https://www.gsea-msigdb.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "NADELLA_PRKAR1A_TARGETS_DN" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MSigDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:msio a bioregistry.schema:resource ; + rdfs:label "Metabolomics Standards Initiative Ontology" ; + rdfs:comment "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies." ; + foaf:homepage "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "msio" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/msio/terms?iri=http://purl.obolibrary.org/obo/MSIO_$1" . + +bioregistry.resource:multicellds.cell_line a bioregistry.schema:resource ; + rdfs:label "MultiCellDS Digital Cell Line" ; + rdfs:comment "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MCDS_L_0000000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MULTICELLDS.CELL_LINE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "multicellds.cell_line" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "multicellds.cell_line" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^MCDS_L_[a-zA-Z0-9]{1,10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/multicellds.cell_line:$1" . + +bioregistry.resource:multicellds.collection a bioregistry.schema:resource ; + rdfs:label "MultiCellDS collection" ; + rdfs:comment "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MCDS_C_0000000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "multicellds.collection" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "multicellds.collection" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MULTICELLDS.COLLECTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^MCDS_C_[a-zA-Z0-9]{1,10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/multicellds.collection:$1" . + +bioregistry.resource:multicellds.snapshot a bioregistry.schema:resource ; + rdfs:label "MultiCellDS Digital snapshot" ; + rdfs:comment "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MCDS_S_0000000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "multicellds.snapshot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MULTICELLDS.SNAPSHOT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "multicellds.snapshot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^MCDS_S_[a-zA-Z0-9]{1,10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/multicellds.snapshot:$1" . + +bioregistry.resource:mw.project a bioregistry.schema:resource ; + rdfs:label "Metabolomics Workbench Project" ; + rdfs:comment "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PR000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mw.project" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MW.PROJECT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mw.project" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^PR[0-9]{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mw.project:$1" . + +bioregistry.resource:mw.study a bioregistry.schema:resource ; + rdfs:label "Metabolomics Workbench Study" ; + rdfs:comment "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ST000900" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mw.study" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MW.STUDY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mw.study" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^ST[0-9]{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mw.study:$1" . + +bioregistry.resource:myco.lepra a bioregistry.schema:resource ; + rdfs:label "MycoBrowser leprae" ; + rdfs:comment "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ML0224" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "myco.lepra" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "myco.lepra" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MYCO.LEPRA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^ML\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/myco.lepra:$1" . + +bioregistry.resource:myco.marinum a bioregistry.schema:resource ; + rdfs:label "MycoBrowser marinum" ; + rdfs:comment "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MMAR_2462" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MYCO.MARINUM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "myco.marinum" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "myco.marinum" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^MMAR\\_\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/myco.marinum:$1" . + +bioregistry.resource:myco.smeg a bioregistry.schema:resource ; + rdfs:label "MycoBrowser smegmatis" ; + rdfs:comment "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MSMEG_3769" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "myco.smeg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "myco.smeg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MYCO.SMEG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^MSMEG\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/myco.smeg:$1" . + +bioregistry.resource:myco.tuber a bioregistry.schema:resource ; + rdfs:label "MycoBrowser tuberculosis" ; + rdfs:comment "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Rv1908c" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "myco.tuber" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MYCO.TUBER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "myco.tuber" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^Rv\\d{4}(A|B|c)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/myco.tuber:$1" . + +bioregistry.resource:mycobank a bioregistry.schema:resource ; + rdfs:label "Fungal Nomenclature and Species Bank" ; + rdfs:comment "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations." ; + foaf:homepage "http://www.mycobank.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "349124" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mycobank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MycoBank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mycobank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MYCOBANK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mycobank:$1" . + +bioregistry.resource:mzspec a bioregistry.schema:resource ; + rdfs:label "Universal Spectrum Identifier" ; + rdfs:comment "The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mzspec" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MZSPEC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mzspec" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^mzspec:.+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/MZSPEC:$1" . + +bioregistry.resource:namerxn a bioregistry.schema:resource ; + rdfs:label "NameRXN" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:napdi a bioregistry.schema:resource ; + rdfs:label "Natural Product-Drug Interaction Research Data Repository" ; + rdfs:comment "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "28" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "napdi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "napdi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NAPDI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/napdi:$1" . + +bioregistry.resource:napp a bioregistry.schema:resource ; + rdfs:label "Nucleic Acids Phylogenetic Profiling" ; + rdfs:comment "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "351" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "napp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "napp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NAPP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/napp:$1" . + +bioregistry.resource:narcis a bioregistry.schema:resource ; + rdfs:label "National Academic Research and Collaborations Information System" ; + rdfs:comment "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases." ; + foaf:homepage "http://www.narcis.nl" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "oai:cwi.nl:4725" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NARCIS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "narcis" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "narcis" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^oai\\:cwi\\.nl\\:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/narcis:$1" . + +bioregistry.resource:nasc a bioregistry.schema:resource ; + rdfs:label "NASC code" ; + rdfs:comment "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "N1899" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NASC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nasc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nasc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^(\\w+)?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/nasc:$1" . + +bioregistry.resource:nbn a bioregistry.schema:resource ; + rdfs:label "National Bibliography Number" ; + rdfs:comment "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "urn:nbn:fi:tkk-004781" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nbn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nbn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NBN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^urn\\:nbn\\:[A-Za-z_0-9]+\\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/nbn:$1" . + +bioregistry.resource:nbo a bioregistry.schema:resource ; + rdfs:label "Neuro Behavior Ontology" ; + rdfs:comment "An ontology of human and animal behaviours and behavioural phenotypes" ; + foaf:homepage "https://github.com/obo-behavior/behavior-ontology/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo" ; + bioregistry.schema:email "g.gkoutos@bham.ac.uk" ; + bioregistry.schema:example "0000564" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nbo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/nbo/terms?iri=http://purl.obolibrary.org/obo/NBO_$1" . + +bioregistry.resource:nbrc a bioregistry.schema:resource ; + rdfs:label "NITE Biological Resource Center" ; + rdfs:comment "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information." ; + foaf:homepage "http://www.nbrc.nite.go.jp/e/catalog-e.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "00001234" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NBRC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nbrc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nbrc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NBRC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/nbrc:$1" . + +bioregistry.resource:ncats.drug a bioregistry.schema:resource ; 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+ bioregistry.schema:hasMetaidentifier "NCBITaxon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "taxonomy" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncbitaxon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCBITaxon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "taxon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCBITAXON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "taxon" ; 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It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C0026339" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncim" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncim" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCIM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^C\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ncim:$1" . + +bioregistry.resource:ncit a bioregistry.schema:resource ; + rdfs:label "NCI Thesaurus" ; + rdfs:comment "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code." ; + foaf:homepage "https://github.com/NCI-Thesaurus/thesaurus-obo-edition" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/ncit.obo" ; + bioregistry.schema:email "haendel@ohsu.edu" ; + bioregistry.schema:example "C138986" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncit" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncit" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncit" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCIT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCIT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P1748" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCIT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^C\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ncit:$1" . + +bioregistry.resource:ncro a bioregistry.schema:resource ; + rdfs:label "Non-Coding RNA Ontology" ; + rdfs:comment "An ontology for non-coding RNA, both of biological origin, and engineered." ; + foaf:homepage "http://omnisearch.soc.southalabama.edu/w/index.php/Ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "huang@southalabama.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ncro/terms?iri=http://purl.obolibrary.org/obo/NCRO_$1" . + +bioregistry.resource:ndc a bioregistry.schema:resource ; + rdfs:label "National Drug Code" ; + rdfs:comment "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0002-1975-61" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ndc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ndc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NDC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+\\-\\d+\\-\\d+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ndc:$1" . + +bioregistry.resource:nddf a bioregistry.schema:resource ; + rdfs:label "National Drug Data File" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "002678" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NDDF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NDDF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:ndex a bioregistry.schema:resource ; + rdfs:label "Network Data Exchange" ; + rdfs:comment "The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge." ; + foaf:homepage "https://www.ndexbio.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf" ; + bioregistry.schema:provider_formatter "https://www.ndexbio.org/viewer/networks/$1" . + +bioregistry.resource:ndfrt a bioregistry.schema:resource ; + rdfs:label "National Drug File - Reference Terminology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "N0000001662" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NDFRT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2115" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] . + +bioregistry.resource:nemo a bioregistry.schema:resource ; + rdfs:label "Neural ElectroMagnetic Ontology" ; + rdfs:comment "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "smp-m3w9hbe" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NEMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nemo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "[a-z]{3}-[a-km-z0-9]{7}" ; + bioregistry.schema:provider_formatter "https://identifiers.org/nemo:$1" . + +bioregistry.resource:neurolex a bioregistry.schema:resource ; + rdfs:label "NeuroLex" ; + rdfs:comment "The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Birnlex_721" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neurolex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NEUROLEX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neurolex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/neurolex:$1" . + +bioregistry.resource:neuromorpho a bioregistry.schema:resource ; + rdfs:label "NeuroMorpho" ; + rdfs:comment "NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Rosa2" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neuromorpho" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NEUROMORPHO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neuromorpho" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/neuromorpho:$1" . + +bioregistry.resource:neuronames a bioregistry.schema:resource ; + rdfs:label "NeuroNames" ; + rdfs:comment "None" ; + foaf:homepage "http://braininfo.rprc.washington.edu/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "268" ; + bioregistry.schema:provider_formatter "https://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1" . + +bioregistry.resource:neurondb a bioregistry.schema:resource ; + rdfs:label "NeuronDB" ; + rdfs:comment "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "265" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NEURONDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neurondb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neurondb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/neurondb:$1" . + +bioregistry.resource:neurovault.collection a bioregistry.schema:resource ; + rdfs:label "NeuroVault Collection" ; + rdfs:comment "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3304" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neurovault.collection" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neurovault.collection" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NEUROVAULT.COLLECTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[1-9][0-9]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/neurovault.collection:$1" . + +bioregistry.resource:neurovault.image a bioregistry.schema:resource ; + rdfs:label "NeuroVault Image" ; + rdfs:comment "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "58788" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neurovault.image" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neurovault.image" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NEUROVAULT.IMAGE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[1-9][0-9]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/neurovault.image:$1" . + +bioregistry.resource:nextdb a bioregistry.schema:resource ; + rdfs:label "Nematode Expression Pattern DataBase" ; + rdfs:comment "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones." ; + foaf:homepage "http://nematode.lab.nig.ac.jp/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "6b1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NextDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nextdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NEXTDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nextdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/nextdb:$1" . + +bioregistry.resource:nextprot a bioregistry.schema:resource ; + rdfs:label "nextProt" ; + rdfs:comment "neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "NX_O00165" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "neXtProt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NEXTPROT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nextprot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nextprot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^NX_\\w+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/nextprot:$1" . + +bioregistry.resource:nextprot.family a bioregistry.schema:resource ; + rdfs:label "neXtProt family" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "01406" ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.nextprot.org/term/FA-$1" . + +bioregistry.resource:ngl a bioregistry.schema:resource ; + rdfs:label "NASA GeneLab" ; + rdfs:comment "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GLDS-141" ; 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+ bioregistry.schema:hasMetaidentifier "NMR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nmr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NMR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NMR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nmr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^NMR:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/NMR:$1" . + +bioregistry.resource:nmrshiftdb2 a bioregistry.schema:resource ; + rdfs:label "NMR Shift Database" ; + rdfs:comment "NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "234" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nmrshiftdb2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/nmrshiftdb2:$1" . + +bioregistry.resource:nomen a bioregistry.schema:resource ; + rdfs:label "NOMEN - A nomenclatural ontology for biological names" ; + rdfs:comment "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature." ; + foaf:homepage "https://github.com/SpeciesFileGroup/nomen" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "diapriid@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NOMEN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nomen" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NOMEN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/nomen/terms?iri=http://purl.obolibrary.org/obo/NOMEN_$1" . + +bioregistry.resource:noncodev3 a bioregistry.schema:resource ; + rdfs:label "NONCODE v3" ; + rdfs:comment "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "377550" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "noncodev3" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "noncodev3" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NONCODEV3" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/noncodev3:$1" . + +bioregistry.resource:noncodev4.gene a bioregistry.schema:resource ; + rdfs:label "NONCODE v4 Gene" ; + rdfs:comment "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "NONHSAG00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "noncodev4.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "noncodev4.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NONCODEV4.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^NONHSAG\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/noncodev4.gene:$1" . + +bioregistry.resource:noncodev4.rna a bioregistry.schema:resource ; + rdfs:label "NONCODE v4 Transcript" ; + rdfs:comment "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "NONHSAT000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "noncodev4.rna" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "noncodev4.rna" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NONCODEV4.RNA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^NONHSAT\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/noncodev4.rna:$1" . + +bioregistry.resource:norine a bioregistry.schema:resource ; + rdfs:label "Nonribosomal Peptides Database" ; + rdfs:comment "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "NOR00681" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "norine" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NORINE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "norine" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^NOR\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/norine:$1" . + +bioregistry.resource:npass a bioregistry.schema:resource ; + rdfs:label "Natural Product Activity and Species Source Database" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "NPC139585" . + +bioregistry.resource:nuclearbd a bioregistry.schema:resource ; + rdfs:label "NucleaRDB" ; + rdfs:comment "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "prgr_human" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nuclearbd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NUCLEARBD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "nuclearbd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+\\_\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/nuclearbd:$1" . + +bioregistry.resource:oae a bioregistry.schema:resource ; + rdfs:label "Ontology of Adverse Events" ; + rdfs:comment "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc." ; + foaf:homepage "https://github.com/OAE-ontology/OAE/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OAE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OAE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OAE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oae" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/oae/terms?iri=http://purl.obolibrary.org/obo/OAE_$1" . + +bioregistry.resource:oarcs a bioregistry.schema:resource ; + rdfs:label "Ontology of Arthropod Circulatory Systems" ; + rdfs:comment "OArCS is an ontology describing the Arthropod ciruclatory system." ; + foaf:homepage "https://github.com/aszool/oarcs" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mjyoder@illinois.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OARCS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oarcs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OARCS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OARCS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/oarcs/terms?iri=http://purl.obolibrary.org/obo/OARCS_$1" . + +bioregistry.resource:oba a bioregistry.schema:resource ; + rdfs:label "Ontology of Biological Attributes" ; + rdfs:comment "A collection of biological attributes (traits) covering all kingdoms of life." ; + foaf:homepage "https://github.com/obophenotype/bio-attribute-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cjmungall@lbl.gov" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oba" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_$1" . + +bioregistry.resource:obcs a bioregistry.schema:resource ; + rdfs:label "Ontology of Biological and Clinical Statistics" ; + rdfs:comment "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012. " ; + foaf:homepage "https://github.com/obcs/obcs" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jiezheng@pennmedicine.upenn.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBCS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "obcs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBCS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBCS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_$1" . + +bioregistry.resource:obi a bioregistry.schema:resource ; + rdfs:label "Ontology for Biomedical Investigations" ; + rdfs:comment "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)." ; + foaf:homepage "http://obi-ontology.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/obi-ontology/obi/raw/master/views/obi.obo" ; + bioregistry.schema:email "bpeters@lji.org" ; + bioregistry.schema:example "0400109" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "obi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "obi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "obi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "http://purl.obolibrary.org/obo/OBI_$1" . + +bioregistry.resource:obib a bioregistry.schema:resource ; + rdfs:label "Ontology for Biobanking" ; + rdfs:comment "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology." ; + foaf:homepage "https://github.com/biobanking/biobanking" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jiezheng@pennmedicine.upenn.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBIB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "obib" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBIB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBIB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_$1" . + +bioregistry.resource:obo a bioregistry.schema:resource ; + rdfs:label "Internal OBO and PyOBO Relations" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:occ a bioregistry.schema:resource ; + rdfs:label "OpenCitations Corpus" ; + rdfs:comment "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "br/1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "occ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "occ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[a-z][a-z]/[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/occ:$1" . + +bioregistry.resource:oci a bioregistry.schema:resource ; + rdfs:label "Open Citation Identifier" ; + rdfs:comment """Each OCI (Open Citation Identifier) has a simple structure: oci:number-number, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entitiy - see https://opencitations.wordpress.com/2018/02/19/citations-as-first-class-data-entities-introduction/ for additional information.\r +\r +OCIs for citations stored within the OpenCitations Corpus are constructed by combining the OpenCitations Corpus local identifiers for the citing and cited bibliographic resources, separating them with a dash. For example, oci:2544384-7295288 is a valid OCI for the citation between two papers stored within the OpenCitations Corpus.\r +\r +OCIs can also be created for bibliographic resources described in an external bibliographic database, if they are similarly identified there by identifiers having a unique numerical part. For example, the OCI for the citation that exists between Wikidata resources Q27931310 and Q22252312 is oci:01027931310–01022252312.\r +\r +OCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1-18" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oci" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OCI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oci" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]+-[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oci:$1" . + +bioregistry.resource:ocid a bioregistry.schema:resource ; + rdfs:label "Ontology Concept Identifiers" ; + rdfs:comment "'ocid' stands for \"Ontology Concept Identifiers\" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "190000021540" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ocid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "ocid:[0-9]{12}" ; + bioregistry.schema:provider_formatter "https://identifiers.org/OCID:$1" . + +bioregistry.resource:oclc a bioregistry.schema:resource ; + rdfs:label "Online Computer Library Center (OCLC) WorldCat" ; + rdfs:comment "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "634515043" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oclc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oclc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OCLC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oclc:$1" . + +bioregistry.resource:odam a bioregistry.schema:resource ; + rdfs:label "Open Data for Access and Mining" ; + rdfs:comment "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "frim1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "odam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/odam:$1" . + +bioregistry.resource:odc.sci a bioregistry.schema:resource ; + rdfs:label "Open Data Commons for Spinal Cord Injury" ; + rdfs:comment "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "602" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "odc.sci" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/odc.sci:$1" . + +bioregistry.resource:odc.tbi a bioregistry.schema:resource ; + rdfs:label "Open Data Commons for Traumatic Brain Injury" ; + rdfs:comment "The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "408" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "odc.tbi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/odc.tbi:$1" . + +bioregistry.resource:odor a bioregistry.schema:resource ; + rdfs:label "Odor Molecules DataBase" ; + rdfs:comment "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "74" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ODOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "odor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "odor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/odor:$1" . + +bioregistry.resource:ogg a bioregistry.schema:resource ; + rdfs:label "The Ontology of Genes and Genomes" ; + rdfs:comment "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. " ; + foaf:homepage "https://bitbucket.org/hegroup/ogg" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ogg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ogg/terms?iri=http://purl.obolibrary.org/obo/OGG_$1" . + +bioregistry.resource:ogi a bioregistry.schema:resource ; + rdfs:label "Ontology for genetic interval" ; + rdfs:comment """OGI formalized the genomic element by defining an upper class 'genetic interval'. + +The definition of 'genetic interval' is "the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture." + +Related paper: + +1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology) +Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf) +Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF) + + +""" ; + foaf:homepage "https://code.google.com/p/ontology-for-genetic-interval/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ogi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ogi/terms?iri=http://purl.obolibrary.org/obo/OGI_$1" . + +bioregistry.resource:ogms a bioregistry.schema:resource ; + rdfs:label "Ontology for General Medical Science" ; + rdfs:comment """The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats. + +OGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology.""" ; + foaf:homepage "https://github.com/OGMS/ogms" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "baeverma@jcvi.org" ; + bioregistry.schema:example "0000031" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGMS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ogms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGMS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGMS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ogms/terms?iri=http://purl.obolibrary.org/obo/OGMS_$1" . + +bioregistry.resource:ogsf a bioregistry.schema:resource ; + rdfs:label "Ontology of Genetic Susceptibility Factor" ; + rdfs:comment "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process." ; + foaf:homepage "https://github.com/linikujp/OGSF" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "linikujp@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGSF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ogsf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGSF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OGSF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ogsf/terms?iri=http://purl.obolibrary.org/obo/OGSF_$1" . + +bioregistry.resource:ohd a bioregistry.schema:resource ; + rdfs:label "The Oral Health and Disease Ontology" ; + rdfs:comment "The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records." ; + foaf:homepage "https://purl.obolibrary.org/obo/ohd/home" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "alanruttenberg@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ohd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OHD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OHD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OHD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ohd/terms?iri=http://purl.obolibrary.org/obo/OHD_$1" . + +bioregistry.resource:ohmi a bioregistry.schema:resource ; + rdfs:label "Ontology of Host-Microbiome Interactions" ; + rdfs:comment "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions." ; + foaf:homepage "https://github.com/ohmi-ontology/ohmi" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OHMI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OHMI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OHMI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ohmi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ohmi/terms?iri=http://purl.obolibrary.org/obo/OHMI_$1" . + +bioregistry.resource:ohpi a bioregistry.schema:resource ; + rdfs:label "Ontology of Host Pathogen Interactions" ; + rdfs:comment "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration)." ; + foaf:homepage "https://github.com/OHPI/ohpi" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "edong@umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OHPI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ohpi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OHPI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ohpi/terms?iri=http://purl.obolibrary.org/obo/OHPI_$1" . + +bioregistry.resource:oid a bioregistry.schema:resource ; + rdfs:label "OID Repository" ; + rdfs:comment "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2.16.840" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[\\d.]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oid:$1" . + +bioregistry.resource:olatdv a bioregistry.schema:resource ; + rdfs:label "Medaka Developmental Stages" ; + rdfs:comment "Life cycle stages for Medaka" ; + foaf:homepage "https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "bgee@sib.swiss" ; + bioregistry.schema:example "0000210" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OLATDV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "olatdv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OLATDV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OlatDv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/olatdv/terms?iri=http://purl.obolibrary.org/obo/OLATDV_$1" . + +bioregistry.resource:om a bioregistry.schema:resource ; + rdfs:label "Ontology of units of Measure" ; + rdfs:comment "The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging" ; + foaf:homepage "https://github.com/HajoRijgersberg/OM" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "hajo.rijgersberg@wur.nl" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "om" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/om/terms?iri=http://purl.obolibrary.org/obo/OM_$1" . + +bioregistry.resource:oma.grp a bioregistry.schema:resource ; + rdfs:label "OMA Group" ; + rdfs:comment "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LCSCCPN" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMA.GRP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oma.grp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oma.grp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oma.grp:$1" . + +bioregistry.resource:oma.hog a bioregistry.schema:resource ; + rdfs:label "OMA HOGs" ; + rdfs:comment "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. " ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0459895" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oma.hog" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$" ; + bioregistry.schema:provider_formatter "https://omabrowser.org/oma/hog/HOG:$1" . + +bioregistry.resource:oma.protein a bioregistry.schema:resource ; + rdfs:label "OMA Protein" ; + rdfs:comment "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HUMAN16963" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oma.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oma.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMA.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z0-9]{5}\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oma.protein:$1" . + +bioregistry.resource:omia a bioregistry.schema:resource ; + rdfs:label "Online Mendelian Inheritance in Animals" ; + rdfs:comment "Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omia" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omia" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/omia:$1" . + +bioregistry.resource:omiabis a bioregistry.schema:resource ; + rdfs:label "Ontologized MIABIS" ; + rdfs:comment "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)" ; + foaf:homepage "https://github.com/OMIABIS/omiabis-dev" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mbrochhausen@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIABIS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omiabis" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIABIS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIABIS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/omiabis/terms?iri=http://purl.obolibrary.org/obo/OMIABIS_$1" . + +bioregistry.resource:omit a bioregistry.schema:resource ; + rdfs:label "Ontology for MicroRNA Target" ; + rdfs:comment "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes)." ; + foaf:homepage "http://omit.cis.usouthal.edu/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/OmniSearch/omit/master/src/ontology/omit.obo" ; + bioregistry.schema:email "huang@southalabama.edu" ; + bioregistry.schema:example "0000069" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omit" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omit" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Q55118529" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omit" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMIT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/omit:$1" . + +bioregistry.resource:omo a bioregistry.schema:resource ; + rdfs:label "OBO Metadata Ontology" ; + rdfs:comment "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." ; + foaf:homepage "https://github.com/information-artifact-ontology/ontology-metadata" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cjmungall@lbl.gov" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/omo/terms?iri=http://purl.obolibrary.org/obo/OMO_$1" . + +bioregistry.resource:omop a bioregistry.schema:resource ; + rdfs:label "Observational Medical Outcomes Partnership" ; + rdfs:comment "None" ; + foaf:homepage "https://www.ohdsi.org/data-standardization/the-common-data-model/" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:omp a bioregistry.schema:resource ; + rdfs:label "Ontology of Microbial Phenotypes" ; + rdfs:comment "An ontology of phenotypes covering microbes" ; + foaf:homepage "http://microbialphenotypes.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jimhu@tamu.edu" ; + bioregistry.schema:example "0005067" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_$1" . + +bioregistry.resource:omrse a bioregistry.schema:resource ; + rdfs:label "Ontology of Medically Related Social Entities" ; + rdfs:comment "This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations." ; + foaf:homepage "https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/ufbmi/OMRSE/raw/master/omrse-full.obo" ; + bioregistry.schema:email "hoganwr@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMRSE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "omrse" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMRSE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OMRSE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/omrse/terms?iri=http://purl.obolibrary.org/obo/OMRSE_$1" . + +bioregistry.resource:oncotree a bioregistry.schema:resource ; + rdfs:label "OncoTree" ; + rdfs:comment "None" ; + foaf:homepage "http://oncotree.mskcc.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BLL" ; + bioregistry.schema:provider_formatter "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1" . + +bioregistry.resource:one a bioregistry.schema:resource ; + rdfs:label "Ontology for Nutritional Epidemiology" ; + rdfs:comment "An ontology to standardize research output of nutritional epidemiologic studies." ; + foaf:homepage "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "chen.yang@ugent.be" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "one" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ONE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ONE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/one/terms?iri=http://purl.obolibrary.org/obo/ONE_$1" . + +bioregistry.resource:ons a bioregistry.schema:resource ; + rdfs:label "Ontology for Nutritional Studies" ; + rdfs:comment "An ontology for description of concepts in the nutritional studies domain." ; + foaf:homepage "https://github.com/enpadasi/Ontology-for-Nutritional-Studies" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "francesco.vitali@ibba.cnr.it" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ons" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ONS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ONS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ons/terms?iri=http://purl.obolibrary.org/obo/ONS_$1" . + +bioregistry.resource:ontoneo a bioregistry.schema:resource ; + rdfs:label "Obstetric and Neonatal Ontology" ; + rdfs:comment "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby." ; + foaf:homepage "http://ontoneo.com" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "fernanda.farinelli@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ontoneo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ONTONEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ONTONEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ONTONEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ontoneo/terms?iri=http://purl.obolibrary.org/obo/ONTONEO_$1" . + +bioregistry.resource:oostt a bioregistry.schema:resource ; + rdfs:label "Ontology of Organizational Structures of Trauma centers and Trauma systems" ; + rdfs:comment "An ontology built for representating the organizational components of trauma centers and trauma systems." ; + foaf:homepage "https://github.com/OOSTT/OOSTT" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mbrochhausen@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OOSTT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OOSTT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OOSTT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oostt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/oostt/terms?iri=http://purl.obolibrary.org/obo/OOSTT_$1" . + +bioregistry.resource:opb a bioregistry.schema:resource ; + rdfs:label "Ontology of Physics for Biology" ; + rdfs:comment "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "OPB_00573" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OPB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "opb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "opb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OPB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^OPB_\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/opb:$1" . + +bioregistry.resource:opl a bioregistry.schema:resource ; + rdfs:label "Ontology for Parasite LifeCycle" ; + rdfs:comment "The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium." ; + foaf:homepage "https://github.com/OPL-ontology/OPL" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "preets79@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OPL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OPL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "opl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OPL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_$1" . + +bioregistry.resource:opm a bioregistry.schema:resource ; + rdfs:label "Orientations of Proteins in Membranes Database" ; + rdfs:comment "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1h68" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "opm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OPM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "opm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9][A-Za-z0-9]{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/opm:$1" . + +bioregistry.resource:opmi a bioregistry.schema:resource ; + rdfs:label "Ontology of Precision Medicine and Investigation" ; + rdfs:comment "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles." ; + foaf:homepage "https://github.com/OPMI/opmi" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OPMI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OPMI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "opmi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_$1" . + +bioregistry.resource:orcid a bioregistry.schema:resource ; + rdfs:label "Open Researcher and Contributor ID" ; + rdfs:comment "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities." ; + foaf:homepage "https://orcid.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0000-0002-5355-2576" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orcid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORCID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORCID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orcid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P496" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/orcid:$1" . + +bioregistry.resource:ordb a bioregistry.schema:resource ; + rdfs:label "Olfactory Receptor Database" ; + rdfs:comment "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "8497" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ordb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ordb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ordb:$1" . + +bioregistry.resource:oridb.sacch a bioregistry.schema:resource ; + rdfs:label "OriDB Saccharomyces" ; + rdfs:comment "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oridb.sacch" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORIDB.SACCH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oridb.sacch" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oridb.sacch:$1" . + +bioregistry.resource:oridb.schizo a bioregistry.schema:resource ; + rdfs:label "OriDB Schizosaccharomyces" ; + rdfs:comment "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORIDB.SCHIZO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oridb.schizo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oridb.schizo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oridb.schizo:$1" . + +bioregistry.resource:ornaseq a bioregistry.schema:resource ; + rdfs:label "Ontology of RNA Sequencing" ; + rdfs:comment "An application ontology designed to annotate next-generation sequencing experiments performed on RNA." ; + foaf:homepage "http://kim.bio.upenn.edu/software/ornaseq.shtml" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "safisher@upenn.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORNASEQ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORNASEQ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ornaseq" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_$1" . + +bioregistry.resource:orphanet a bioregistry.schema:resource ; + rdfs:label "Orphanet" ; + rdfs:comment "Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "85163" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Orphanet" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orphanet" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orphanet" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Orphanet" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P1550" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/orphanet:$1" . + +bioregistry.resource:orphanet.ordo a bioregistry.schema:resource ; + rdfs:label "Orphanet Rare Disease Ontology" ; + rdfs:comment """The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r +It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Orphanet_C023" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orphanet.ordo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ordo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORPHANET.ORDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORPHA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orphanet.ordo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^Orphanet(_|:)C?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/orphanet.ordo:$1" . + +bioregistry.resource:orth a bioregistry.schema:resource ; + rdfs:label "Orthology Ontology" ; + rdfs:comment "The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way." ; + foaf:homepage "http://purl.org/net/orth" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORTH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orth" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/orth/terms?iri=http://purl.obolibrary.org/obo/ORTH_$1" . + +bioregistry.resource:orthodb a bioregistry.schema:resource ; + rdfs:label "OrthoDB" ; + rdfs:comment "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Q9P0K8" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OrthoDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORTHODB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orthodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "orthodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/orthodb:$1" . + +bioregistry.resource:oryzabase.gene a bioregistry.schema:resource ; + rdfs:label "Oryzabase Gene" ; + rdfs:comment "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "117" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORYZABASE.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oryzabase.gene:$1" . + +bioregistry.resource:oryzabase.mutant a bioregistry.schema:resource ; + rdfs:label "Oryzabase Mutant" ; + rdfs:comment "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "21393" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.mutant" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORYZABASE.MUTANT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.mutant" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oryzabase.mutant:$1" . + +bioregistry.resource:oryzabase.reference a bioregistry.schema:resource ; + rdfs:label "Oryzabase Reference" ; + rdfs:comment "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "42840" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.reference" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.reference" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oryzabase.reference:$1" . + +bioregistry.resource:oryzabase.stage a bioregistry.schema:resource ; + rdfs:label "Oryzabase Stage" ; + rdfs:comment "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "34" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORYZABASE.STAGE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.stage" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.stage" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oryzabase.stage:$1" . + +bioregistry.resource:oryzabase.strain a bioregistry.schema:resource ; + rdfs:label "Oryzabase Strain" ; + rdfs:comment "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.strain" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ORYZABASE.STRAIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oryzabase.strain" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/oryzabase.strain:$1" . + +bioregistry.resource:otl a bioregistry.schema:resource ; + rdfs:label "Oryza Tag Line" ; + rdfs:comment "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AADB12" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "otl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "otl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OTL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^A[A-Z]+\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/otl:$1" . + +bioregistry.resource:ovae a bioregistry.schema:resource ; + rdfs:label "Ontology of Vaccine Adverse Events" ; + rdfs:comment "OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). " ; + foaf:homepage "http://www.violinet.org/ovae/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OVAE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OVAE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OVAE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ovae" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ovae/terms?iri=http://purl.obolibrary.org/obo/OVAE_$1" . + +bioregistry.resource:p3db.protein a bioregistry.schema:resource ; + rdfs:label "P3DB Protein" ; + rdfs:comment "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "70" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "p3db.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "p3db.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3DB.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/p3db.protein:$1" . + +bioregistry.resource:p3db.site a bioregistry.schema:resource ; + rdfs:label "P3DB Site" ; + rdfs:comment "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "65" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "p3db.site" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "p3db.site" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3DB.SITE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/p3db.site:$1" . + +bioregistry.resource:paleodb a bioregistry.schema:resource ; + rdfs:label "Paleobiology Database" ; + rdfs:comment "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "83088" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "paleodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PALEODB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "paleodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/paleodb:$1" . + +bioregistry.resource:panther.family a bioregistry.schema:resource ; + rdfs:label "Protein ANalysis THrough Evolutionary Relationships Classification System" ; + rdfs:comment "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families." ; + foaf:homepage "http://www.pantherdb.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PTHR12345" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "panther.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "panther.family" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PANTHER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PANTHER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^PTHR\\d{5}(\\:SF\\d{1,3})?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/panther.family:$1" . + +bioregistry.resource:panther.node a bioregistry.schema:resource ; + rdfs:label "PANTHER Node" ; + rdfs:comment "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PTN000000026" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "panther.node" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PANTHER.NODE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "panther.node" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^PTN\\d{9}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/panther.node:$1" . + +bioregistry.resource:panther.pathway a bioregistry.schema:resource ; + rdfs:label "PANTHER Pathway" ; + rdfs:comment "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P00024" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "panther.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "panther.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PANTHER.PATHWAY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^P\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/panther.pathway:$1" . + +bioregistry.resource:panther.pthcmp a bioregistry.schema:resource ; + rdfs:label "PANTHER Pathway Component" ; + rdfs:comment """The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r +components may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P00266" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "panther.pthcmp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "panther.pthcmp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PANTHER.PTHCMP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^G|P|U|C|S\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/panther.pthcmp:$1" . + +bioregistry.resource:pass2 a bioregistry.schema:resource ; + rdfs:label "PASS2" ; + rdfs:comment "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity." ; + foaf:homepage "http://caps.ncbs.res.in/pass2" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:example "46977" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pass2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PASS2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pass2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pass2:$1" . + +bioregistry.resource:pathbank a bioregistry.schema:resource ; + rdfs:label "PathBank" ; + rdfs:comment "None" ; + foaf:homepage "https://pathbank.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SMP0000219" ; + bioregistry.schema:pattern "^SMP\\d+$" ; + bioregistry.schema:provider_formatter "https://pathbank.org/view/$1" . + +bioregistry.resource:pathwaycommons a bioregistry.schema:resource ; + rdfs:label "Pathway Commons" ; + rdfs:comment "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "485991" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PathwayCommons" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pathwaycommons" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PATHWAYCOMMONS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pathwaycommons" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pathwaycommons:$1" . + +bioregistry.resource:pato a bioregistry.schema:resource ; + rdfs:label "Phenotype And Trait Ontology" ; + rdfs:comment "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation." ; + foaf:homepage "https://github.com/pato-ontology/pato/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "g.gkoutos@gmail.com" ; + bioregistry.schema:example "0001998" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PATO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pato" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PATO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pato" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PATO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PATO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pato" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^PATO:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/PATO:$1" . + +bioregistry.resource:paxdb.organism a bioregistry.schema:resource ; + rdfs:label "PaxDb Organism" ; + rdfs:comment "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "9606" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PAXDB.ORGANISM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "paxdb.organism" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "paxdb.organism" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/paxdb.organism:$1" . + +bioregistry.resource:paxdb.protein a bioregistry.schema:resource ; + rdfs:label "PaxDb Protein" ; + rdfs:comment "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "977869" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "paxdb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PAXDB.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "paxdb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/paxdb.protein:$1" . + +bioregistry.resource:pazar a bioregistry.schema:resource ; + rdfs:label "Pazar Transcription Factor" ; + rdfs:comment "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TF0001053" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pazar" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pazar" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PAZAR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^TF\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pazar:$1" . + +bioregistry.resource:pco a bioregistry.schema:resource ; + rdfs:label "Population and Community Ontology" ; + rdfs:comment "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology." ; + foaf:homepage "https://github.com/PopulationAndCommunityOntology/pco" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "rlwalls2008@gmail.com" ; + bioregistry.schema:example "0000021" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/pco/terms?iri=http://purl.obolibrary.org/obo/PCO_$1" . + +bioregistry.resource:pdb-ccd a bioregistry.schema:resource ; + rdfs:label "Chemical Component Dictionary" ; + rdfs:comment "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AB0" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pdb-ccd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDB-CCD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pdb-ccd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w{3}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1" . + +bioregistry.resource:pdb.ligand a bioregistry.schema:resource ; + rdfs:label "Protein Data Bank Ligand" ; + rdfs:comment "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TRQ" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pdb.ligand" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pdb.ligand" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDB.LIGAND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3636" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pdb.ligand:$1" . + +bioregistry.resource:pdbe a bioregistry.schema:resource ; + rdfs:label "Protein Data Bank in Europe" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:pdro a bioregistry.schema:resource ; + rdfs:label "The Prescription of Drugs Ontology" ; + rdfs:comment "An ontology to describe entities related to prescription of drugs" ; + foaf:homepage "https://github.com/OpenLHS/PDRO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "paul.fabry@usherbrooke.ca" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pdro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/pdro/terms?iri=http://purl.obolibrary.org/obo/PDRO_$1" . + +bioregistry.resource:pdumdv a bioregistry.schema:resource ; + rdfs:label "Platynereis Developmental Stages" ; + rdfs:comment "Life cycle stages for Platynereis dumerilii" ; + foaf:homepage "https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "bgee@sib.swiss" ; + bioregistry.schema:example "0001410" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDUMDV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDUMDV" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PdumDv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pdumdv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/pdumdv/terms?iri=http://purl.obolibrary.org/obo/PDUMDV_$1" . + +bioregistry.resource:peco a bioregistry.schema:resource ; + rdfs:label "Plant Experimental Conditions Ontology" ; + rdfs:comment "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies." ; + foaf:homepage "http://planteome.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo" ; + bioregistry.schema:email "jaiswalp@science.oregonstate.edu" ; + bioregistry.schema:example "0007114" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "peco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; 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+ rdfs:comment "None" ; + foaf:homepage "https://www.psidev.info/peff" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:download "https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo" ; + bioregistry.schema:example "0001011" . + +bioregistry.resource:peptideatlas a bioregistry.schema:resource ; + rdfs:label "PeptideAtlas" ; + rdfs:comment "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PAp00000009" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PeptideAtlas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "peptideatlas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; 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For each entry a protein sequence alignment and a Hidden Markov Model is stored." ; + foaf:homepage "http://pfam.xfam.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PF11779" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Pfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3519" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Pfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^PF\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pfam:$1" . + +bioregistry.resource:pfam.clan a bioregistry.schema:resource ; + rdfs:label "Pfam Clans" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:pfr a bioregistry.schema:resource ; + rdfs:label "Proteoform Atlas" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1001" ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "http://repository.topdownproteomics.org/proteoforms/$1" . + +bioregistry.resource:pgs a bioregistry.schema:resource ; + rdfs:label "Polygenic Score Catalog" ; + rdfs:comment "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PGS000018" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pgs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^PGS[0-9]{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pgs:$1" . + +bioregistry.resource:pgx a bioregistry.schema:resource ; + rdfs:label "Progenetix" ; + rdfs:comment "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "pgxbs-kftva5zv" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pgx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PGX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pgx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pgx:$1" . + +bioregistry.resource:pharmgkb.disease a bioregistry.schema:resource ; + rdfs:label "PharmGKB Disease" ; + rdfs:comment "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PA447218" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7001" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHARMGKB.DISEASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pharmgkb.disease" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pharmgkb.disease" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^PA\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pharmgkb.disease:$1" . + +bioregistry.resource:pharmgkb.drug a bioregistry.schema:resource ; + rdfs:label "PharmGKB Drug" ; + rdfs:comment "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PA448710" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pharmgkb.drug" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHARMGKB.DRUG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pharmgkb.drug" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7001" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^PA\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pharmgkb.drug:$1" . + +bioregistry.resource:pharmgkb.gene a bioregistry.schema:resource ; + rdfs:label "Pharmacogenetics and Pharmacogenomics Knowledge Base" ; + rdfs:comment "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains." ; + foaf:homepage "https://www.pharmgkb.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PA131" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pharmgkb.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7001" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PharmGKB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pharmgkb.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHARMGKB.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHARMGKB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^PA\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pharmgkb.gene:$1" . + +bioregistry.resource:pharmgkb.pathways a bioregistry.schema:resource ; + rdfs:label "PharmGKB Pathways" ; + rdfs:comment """The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r +PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PA146123006" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pharmgkb.pathways" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHARMGKB.PATHWAYS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7001" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pharmgkb.pathways" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^PA\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pharmgkb.pathways:$1" . + +bioregistry.resource:phenolexplorer a bioregistry.schema:resource ; + rdfs:label "Phenol-Explorer" ; + rdfs:comment "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "75" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phenolexplorer" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phenolexplorer" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHENOLEXPLORER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/phenolexplorer:$1" . + +bioregistry.resource:phi a bioregistry.schema:resource ; + rdfs:label "PHI-base Ontology" ; + rdfs:comment "Pathogen-Host Interaction database Ontology used by Ensembl" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phi" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/phi/terms?iri=http://purl.obolibrary.org/obo/PHI_$1" . + +bioregistry.resource:phipo a bioregistry.schema:resource ; + rdfs:label "Pathogen Host Interaction Phenotype Ontology" ; + rdfs:comment "Ontology of species-neutral phenotypes observed in pathogen-host interactions." ; + foaf:homepage "https://github.com/PHI-base/phipo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "alayne.cuzick@rothamsted.ac.uk" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHIPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phipo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHIPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_$1" . + +bioregistry.resource:phosphopoint.kinase a bioregistry.schema:resource ; + rdfs:label "PhosphoPoint Kinase" ; + rdfs:comment "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AURKA" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phosphopoint.kinase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHOSPHOPOINT.KINASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phosphopoint.kinase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/phosphopoint.kinase:$1" . + +bioregistry.resource:phosphopoint.protein a bioregistry.schema:resource ; + rdfs:label "PhosphoPoint Phosphoprotein" ; + rdfs:comment "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AURKA" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phosphopoint.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phosphopoint.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHOSPHOPOINT.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/phosphopoint.protein:$1" . + +bioregistry.resource:phosphosite.protein a bioregistry.schema:resource ; + rdfs:label "PhosphoSite Protein" ; + rdfs:comment "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "12300" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHOSPHOSITE.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phosphosite.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phosphosite.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/phosphosite.protein:$1" . + +bioregistry.resource:phosphosite.residue a bioregistry.schema:resource ; + rdfs:label "PhosphoSite Residue" ; + rdfs:comment "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2842" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phosphosite.residue" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHOSPHOSITE.RESIDUE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phosphosite.residue" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/phosphosite.residue:$1" . + +bioregistry.resource:phylomedb a bioregistry.schema:resource ; + rdfs:label "PhylomeDB" ; + rdfs:comment "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Phy000CLXM_RAT" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHYLOMEDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phylomedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phylomedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PhylomeDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/phylomedb:$1" . + +bioregistry.resource:phytozome.locus a bioregistry.schema:resource ; + rdfs:label "Plant Genome Network" ; + rdfs:comment "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information." ; + foaf:homepage "http://phytozome.jgi.doe.gov/pz/portal.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Glyma0021s00410" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Phytozome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PHYTOZOME.LOCUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phytozome.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "phytozome.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/phytozome.locus:$1" . + +bioregistry.resource:pictar a bioregistry.schema:resource ; + rdfs:label "PicTar" ; + rdfs:comment "None" ; + foaf:homepage "https://pictar.mdc-berlin.de/" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:example "hsa-let-7a" . + +bioregistry.resource:pid.pathway a bioregistry.schema:resource ; + rdfs:label "NCI Pathway Interaction Database: Pathway" ; + rdfs:comment "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "eff796f3-6195-11e5-8ac5-06603eb7f303" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pid.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pid.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PID.PATHWAY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pid.pathway:$1" . + +bioregistry.resource:pigqtldb a bioregistry.schema:resource ; + rdfs:label "Animal Genome Pig QTL" ; + rdfs:comment "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "14" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pigqtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PIGQTLDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pigqtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pigqtldb:$1" . + +bioregistry.resource:pina a bioregistry.schema:resource ; + rdfs:label "Protein Interaction Network Analysis" ; + rdfs:comment "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Q13485" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pina" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pina" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PINA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pina:$1" . + +bioregistry.resource:piroplasma a bioregistry.schema:resource ; + rdfs:label "PiroplasmaDB" ; + rdfs:comment "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TA14985" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "piroplasma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "piroplasma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PIROPLASMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^TA\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/piroplasma:$1" . + +bioregistry.resource:pirsf a bioregistry.schema:resource ; + rdfs:label "PIR Superfamily Classification System" ; + rdfs:comment "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships." ; + foaf:homepage "http://pir.georgetown.edu/pirsf/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PIRSF000100" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PIRSF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pirsf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pirsf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PIRSF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PIRSF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^PIRSF\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pirsf:$1" . + +bioregistry.resource:pkdb a bioregistry.schema:resource ; + rdfs:label "PK-DB" ; + rdfs:comment "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. " ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PKDB00198" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pkdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^PKDB[0-9]{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pkdb:$1" . + +bioregistry.resource:plana a bioregistry.schema:resource ; + rdfs:label "planaria-ontology" ; + rdfs:comment "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes." ; + foaf:homepage "https://github.com/obophenotype/planaria-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "smr@stowers.org" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "plana" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLANA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLANA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLANA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/plana/terms?iri=http://purl.obolibrary.org/obo/PLANA_$1" . + +bioregistry.resource:planp a bioregistry.schema:resource ; + rdfs:label "Planarian Phenotype Ontology" ; + rdfs:comment "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea." ; + foaf:homepage "https://github.com/obophenotype/planarian-phenotype-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "smr@stowers.org" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "planp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLANP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLANP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/planp/terms?iri=http://purl.obolibrary.org/obo/PLANP_$1" . + +bioregistry.resource:planttfdb a bioregistry.schema:resource ; + rdfs:label "Plant Transcription Factor Database" ; + rdfs:comment "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Ath_AT1G01030.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "planttfdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "planttfdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLANTTFDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/planttfdb:$1" . + +bioregistry.resource:plasmodb a bioregistry.schema:resource ; + rdfs:label "PlasmoDB Plasmodium Genome Resource" ; + rdfs:comment "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "http://plasmodb.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PF11_0344" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ApiDB_PlasmoDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "plasmodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "plasmodb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ApiDB_PlasmoDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLASMODB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/plasmodb:$1" . + +bioregistry.resource:plo a bioregistry.schema:resource ; + rdfs:label "Plasmodium Life Cycle" ; + rdfs:comment "None" ; + foaf:homepage "http://www.sanger.ac.uk/Users/mb4/PLO/" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "mb4@sanger.ac.uk" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PLO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:pmap.cutdb a bioregistry.schema:resource ; + rdfs:label "CutDB" ; + rdfs:comment "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "25782" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmap.cutdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PMAP.CUTDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmap.cutdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pmap.cutdb:$1" . + +bioregistry.resource:pmap.substratedb a bioregistry.schema:resource ; + rdfs:label "SubstrateDB" ; + rdfs:comment "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1915" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmap.substratedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PMAP.SUBSTRATEDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmap.substratedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pmap.substratedb:$1" . + +bioregistry.resource:pmc a bioregistry.schema:resource ; + rdfs:label "Pubmed Central" ; + rdfs:comment "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature." ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/pmc/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PMC3084216" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PMCID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P932" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PMCID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "PMC\\d+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pmc:$1" . + +bioregistry.resource:pmdb a bioregistry.schema:resource ; + rdfs:label "Protein Model Database" ; + rdfs:comment "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PM0012345" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PMDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^PM\\d{7}" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pmdb:$1" . + +bioregistry.resource:pmp a bioregistry.schema:resource ; + rdfs:label "Protein Model Portal" ; + rdfs:comment "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Q0VCA6" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PMP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pmp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pmp:$1" . + +bioregistry.resource:po a bioregistry.schema:resource ; + rdfs:label "Plant Ontology" ; + rdfs:comment "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data." ; + foaf:homepage "http://browser.planteome.org/amigo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jaiswalp@science.oregonstate.edu" ; + bioregistry.schema:example "0009089" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "po" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "po" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "po" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^PO:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/PO:$1" . + +bioregistry.resource:pocketome a bioregistry.schema:resource ; + rdfs:label "Pocketome" ; + rdfs:comment "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1433C_TOBAC_1_252" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "POCKETOME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pocketome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pocketome" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Za-z_0-9]+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pocketome:$1" . + +bioregistry.resource:polbase a bioregistry.schema:resource ; + rdfs:label "PolBase" ; + rdfs:comment "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "19-T4" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "polbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "polbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "POLBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z-0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/polbase:$1" . + +bioregistry.resource:pombase a bioregistry.schema:resource ; + rdfs:label "PomBase" ; + rdfs:comment "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets." ; + foaf:homepage "https://www.pombase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SPCC13B11.01" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PomBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PomBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P6245" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pombase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pombase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PomBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PomBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^S\\w+(\\.)?\\w+(\\.)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pombase:$1" . + +bioregistry.resource:poro a bioregistry.schema:resource ; + rdfs:label "Porifera Ontology" ; + rdfs:comment "An ontology describing the anatomical structures and characteristics of Porifera (sponges)" ; + foaf:homepage "https://github.com/obophenotype/porifera-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "robert.thacker@stonybrook.edu" ; + bioregistry.schema:example "0000550" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PORO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "poro" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PORO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PORO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/poro/terms?iri=http://purl.obolibrary.org/obo/PORO_$1" . + +bioregistry.resource:ppdb a bioregistry.schema:resource ; + rdfs:label "Pesticide Properties DataBase" ; + rdfs:comment "None" ; + foaf:homepage "https://sitem.herts.ac.uk/aeru/ppdb/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1484" ; + bioregistry.schema:provider_formatter "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm" . + +bioregistry.resource:ppo a bioregistry.schema:resource ; + rdfs:label "Plant Phenology Ontology" ; + rdfs:comment "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales." ; + foaf:homepage "https://github.com/PlantPhenoOntology/PPO" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "rlwalls2008@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ppo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/ppo/terms?iri=http://purl.obolibrary.org/obo/PPO_$1" . + +bioregistry.resource:ppr a bioregistry.schema:resource ; + rdfs:label "Eurpoe PMC Preprints" ; + rdfs:comment "Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ppr103739" ; + bioregistry.schema:provider_formatter "https://europepmc.org/article/ppr/$1" . + +bioregistry.resource:pr a bioregistry.schema:resource ; + rdfs:label "PRotein Ontology (PRO)" ; + rdfs:comment "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies." ; + foaf:homepage "http://proconsortium.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "dan5@georgetown.edu" ; + bioregistry.schema:example "000000024" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P4926" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PRO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^PR:P?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/PR:$1" . + +bioregistry.resource:pride.project a bioregistry.schema:resource ; + rdfs:label "PRIDE Project" ; + rdfs:comment "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PXD000440" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PRIDE.PROJECT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pride.project" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pride.project" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^P(X|R)D\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pride.project:$1" . + +bioregistry.resource:prints a bioregistry.schema:resource ; + rdfs:label "PRINTS compendium of protein fingerprints" ; + rdfs:comment "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours." ; + foaf:homepage "http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PR00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PRINTS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PRINTS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prints" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PRINTS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prints" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^PR\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/prints:$1" . + +bioregistry.resource:probonto a bioregistry.schema:resource ; + rdfs:label "Probability Distribution Ontology" ; + rdfs:comment "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities." ; + foaf:homepage "http://probonto.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "probonto.dev@gmail.com" ; + bioregistry.schema:example "PROB_c0000005" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "probonto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "probonto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROBONTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "probonto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^PROB_c\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/probonto:$1" . + +bioregistry.resource:prodom a bioregistry.schema:resource ; + rdfs:label "ProDom" ; + rdfs:comment "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PD10000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prodom" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prodom" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PRODOM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^PD\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/prodom:$1" . + +bioregistry.resource:proglyc a bioregistry.schema:resource ; + rdfs:label "ProGlycProt" ; + rdfs:comment "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AC119" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROGLYC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "proglyc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "proglyc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[A-Z]C\\d{1,3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/proglyc:$1" . + +bioregistry.resource:prosite a bioregistry.schema:resource ; + rdfs:label "Prosite database of protein families and domains" ; + rdfs:comment "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them." ; + foaf:homepage "https://prosite.expasy.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PS00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prosite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Prosite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROSITE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prosite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P4355" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROSITE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^PS\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/prosite:$1" . + +bioregistry.resource:protclustdb a bioregistry.schema:resource ; + rdfs:label "ProtClustDB" ; + rdfs:comment "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "O80725" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROTCLUSTDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "protclustdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "protclustdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/protclustdb:$1" . + +bioregistry.resource:proteomicsdb.peptide a bioregistry.schema:resource ; + rdfs:label "ProteomicsDB Peptide" ; + rdfs:comment "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "53504" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "proteomicsdb.peptide" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROTEOMICSDB.PEPTIDE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "proteomicsdb.peptide" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/proteomicsdb.peptide:$1" . + +bioregistry.resource:proteomicsdb.protein a bioregistry.schema:resource ; + rdfs:label "ProteomicsDB Protein" ; + rdfs:comment "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "53504" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROTEOMICSDB.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "proteomicsdb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "proteomicsdb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/proteomicsdb.protein:$1" . + +bioregistry.resource:protonet.cluster a bioregistry.schema:resource ; + rdfs:label "ProtoNet Cluster" ; + rdfs:comment "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4349895" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROTONET.CLUSTER" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "protonet.cluster" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "protonet.cluster" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/protonet.cluster:$1" . + +bioregistry.resource:protonet.proteincard a bioregistry.schema:resource ; + rdfs:label "ProtoNet ProteinCard" ; + rdfs:comment "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "16941567" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "protonet.proteincard" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PROTONET.PROTEINCARD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "protonet.proteincard" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/protonet.proteincard:$1" . + +bioregistry.resource:pscdb a bioregistry.schema:resource ; + rdfs:label "Protein Structural Change Database" ; + rdfs:comment "The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "051" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSCDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pscdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pscdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pscdb:$1" . + +bioregistry.resource:psdo a bioregistry.schema:resource ; + rdfs:label "Performance Summary Display Ontology" ; + rdfs:comment "Performance Summary Display Ontology (PSDO) (pronounced \"pseudo\" or \"sudo\") is an application ontology about charts, tables, and graphs that are used to communicate performance information to employees and teams in organizations. PSDO's domain focus is on healthcare organizations that use performance summary displays in clinical dashboards and feedback interventions for healthcare professionals and teams. The displays commonly show information about the quality of care and health outcomes that has been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is not peer-reviewed." ; + foaf:homepage "https://github.com/Display-Lab/psdo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "zachll@umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "psdo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/psdo/terms?iri=http://purl.obolibrary.org/obo/PSDO_$1" . + +bioregistry.resource:pseudogene a bioregistry.schema:resource ; + rdfs:label "PseudoGene" ; + rdfs:comment "None" ; + foaf:homepage "http://www.pseudogene.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PGOHUM00000289843" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pseudo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:pseudomonas a bioregistry.schema:resource ; + rdfs:label "Pseudomonas Genome Database" ; + rdfs:comment "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PSEEN0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pseudomonas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSEUDOMONAS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pseudomonas" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^P\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pseudomonas:$1" . + +bioregistry.resource:psipar a bioregistry.schema:resource ; + rdfs:label "Protein Affinity Reagents" ; + rdfs:comment "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PAR:0116" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "psipar" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSIPAR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "psipar" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^PAR:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/psipar:$1" . + +bioregistry.resource:pso a bioregistry.schema:resource ; + rdfs:label "Plant Stress Ontology" ; + rdfs:comment "The Plant Stress Ontology describes..." ; + foaf:homepage "https://github.com/Planteome/plant-stress-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cooperl@science.oregonstate.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PSO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pso" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_$1" . + +bioregistry.resource:pspub a bioregistry.schema:resource ; + rdfs:label "Phenoscape Publication" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:pubchem.bioassay a bioregistry.schema:resource ; + rdfs:label "NCBI PubChem database of bioassay records" ; + rdfs:comment "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results." ; + foaf:homepage "https://pubchem.ncbi.nlm.nih.gov" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1018" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PubChem_BioAssay" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pubchem.bioassay" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PUBCHEM.BIOASSAY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pubchem.bioassay" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pubchem.bioassay:$1" . + +bioregistry.resource:pubchem.compound a bioregistry.schema:resource ; + rdfs:label "NCBI PubChem database of chemical structures" ; + rdfs:comment "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records." ; + foaf:homepage "http://pubchem.ncbi.nlm.nih.gov" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "100101" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PubChem_Compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pubchem.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P662" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pubchem.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pubchem.compound:$1" . + +bioregistry.resource:pubchem.substance a bioregistry.schema:resource ; + rdfs:label "NCBI PubChem database of chemical substances" ; + rdfs:comment "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records." ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/pcsubstance" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "100101" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2153" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pubchem.substance" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pubchem.substance" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PUBCHEM.SUBSTANCE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PubChem_Substance" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pubchem.substance:$1" . + +bioregistry.resource:publons.researcher a bioregistry.schema:resource ; + rdfs:label "Publons Researcher ID" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ResearchID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:provider_formatter "https://publons.com/researcher/$1" . + +bioregistry.resource:pubmed a bioregistry.schema:resource ; + rdfs:label "PubMed" ; + rdfs:comment "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s." ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/pubmed" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "16333295" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pubmed" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P698" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PMID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pubmed" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PMID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pubmed:$1" . + +bioregistry.resource:pw a bioregistry.schema:resource ; + rdfs:label "Pathway ontology" ; + rdfs:comment "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions." ; + foaf:homepage "http://rgd.mcw.edu/rgdweb/ontology/search.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "ftp://ftp.rgd.mcw.edu/pub/data_release/ontology_obo_files/pathway/pathway.obo" ; + bioregistry.schema:email "gthayman@mcw.edu" ; + bioregistry.schema:example "0000423" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7333" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PW" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PW" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pw" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pw" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pw" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PW" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^PW:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/PW:$1" . + +bioregistry.resource:px a bioregistry.schema:resource ; + rdfs:label "ProteomeXchange" ; + rdfs:comment "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PXD000500" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "px" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "px" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^(R)?PXD\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/px:$1" . + +bioregistry.resource:qtldb a bioregistry.schema:resource ; + rdfs:label "Animal Genome QTL" ; + rdfs:comment "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4685" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "qtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/qtldb:$1" . + +bioregistry.resource:qudt a bioregistry.schema:resource ; + rdfs:label "Quantities, Units, Dimensions, and Types Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "baseDimensionEnumeration" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "QUDT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "qud" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:provider_formatter "http://qudt.org/schema/qudt#$1" . + +bioregistry.resource:rapdb.locus a bioregistry.schema:resource ; + rdfs:label "RAP-DB Locus" ; + rdfs:comment "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Os01g0883800" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rapdb.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^Os\\S+g\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rapdb.locus:$1" . + +bioregistry.resource:rapdb.transcript a bioregistry.schema:resource ; + rdfs:label "RAP-DB Transcript" ; + rdfs:comment "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Os01t0883800-02" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rapdb.transcript" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^Os\\S+t\\d{7}-\\d{2}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rapdb.transcript:$1" . + +bioregistry.resource:rbk a bioregistry.schema:resource ; + rdfs:label "Rebuilding a Kidney" ; + rdfs:comment "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Q-2958" ; 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It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data." ; + foaf:homepage "http://rebase.neb.com/rebase/rebase.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "101" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "REBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "REBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "REBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rebase:$1" . + +bioregistry.resource:receptome.family a bioregistry.schema:resource ; + rdfs:label "Human Plasma Membrane Receptome Families" ; + rdfs:comment "None" ; + foaf:homepage "http://www.receptome.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5.1" ; + bioregistry.schema:provider_formatter "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1" . + +bioregistry.resource:refseq a bioregistry.schema:resource ; + rdfs:label "Reference Sequence Collection" ; + rdfs:comment "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products." ; + foaf:homepage "http://www.ncbi.nlm.nih.gov/RefSeq/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "NP_012345" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "refseq" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RefSeq" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "refseq" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RefSeq" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RefSeq" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\\d+)|(NZ\\_[A-Z]{2,4}\\d+))(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/refseq:$1" . + +bioregistry.resource:repeatsdb.protein a bioregistry.schema:resource ; + rdfs:label "RepeatsDB Protein" ; + rdfs:comment "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P29894" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "repeatsdb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/repeatsdb.protein:$1" . + +bioregistry.resource:repeatsdb.structure a bioregistry.schema:resource ; + rdfs:label "RepeatsDB Structure" ; + rdfs:comment "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2gc4E" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "repeatsdb.structure" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/repeatsdb.structure:$1" . + +bioregistry.resource:reproduceme a bioregistry.schema:resource ; + rdfs:label "REPRODUCE-ME Ontology" ; + rdfs:comment "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility." ; + foaf:homepage "https://w3id.org/reproduceme/research" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "sheeba.samuel@uni-jena.de" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "REPRODUCE-ME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "reproduceme" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/reproduceme/terms?iri=http://purl.obolibrary.org/obo/REPRODUCEME_$1" . + +bioregistry.resource:resid a bioregistry.schema:resource ; + rdfs:label "Protein covalent bond" ; + rdfs:comment "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications." ; 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+ rdfs:comment "Regulation of Gene Expression" ; + foaf:homepage "http://www.semantic-systems-biology.org/apo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "vladimir.n.mironov@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rexo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "REXO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/rexo/terms?iri=http://purl.obolibrary.org/obo/REXO_$1" . + +bioregistry.resource:rfam a bioregistry.schema:resource ; + rdfs:label "Rfam database of RNA families" ; + rdfs:comment "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion." ; + foaf:homepage "https://rfam.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "RF00230" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Rfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^RF\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rfam:$1" . + +bioregistry.resource:rgd a bioregistry.schema:resource ; + rdfs:label "Rat Genome Database" ; + rdfs:comment "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes." ; + foaf:homepage "https://rgd.mcw.edu/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "7499841" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3853" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rgd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rgd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d{4,}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rgd:$1" . + +bioregistry.resource:rgd.qtl a bioregistry.schema:resource ; + rdfs:label "Rat Genome Database qTL" ; + rdfs:comment "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1354581" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rgd.qtl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RGD.QTL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rgd.qtl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rgd.qtl:$1" . + +bioregistry.resource:rgd.strain a bioregistry.schema:resource ; + rdfs:label "Rat Genome Database strain" ; + rdfs:comment "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5688061" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rgd.strain" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rgd.strain" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RGD.STRAIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rgd.strain:$1" . + +bioregistry.resource:rhea a bioregistry.schema:resource ; + rdfs:label "Rhea, the Annotated Reactions Database" ; + rdfs:comment """ Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants. + +Rhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB.""" ; + foaf:homepage "https://www.rhea-db.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "12345" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RHEA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RHEA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rhea" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rhea" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rhea:$1" . + +bioregistry.resource:ricegap a bioregistry.schema:resource ; + rdfs:label "Rice Genome Annotation Project" ; + rdfs:comment "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LOC_Os02g13300" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RICEGAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricegap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricegap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^LOC\\_Os\\d{1,2}g\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ricegap:$1" . + +bioregistry.resource:ricenetdb.compound a bioregistry.schema:resource ; + rdfs:label "RiceNetDB Compound" ; + rdfs:comment "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "OSC1416" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RICENETDB.COMPOUND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^OSC\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ricenetdb.compound:$1" . + +bioregistry.resource:ricenetdb.gene a bioregistry.schema:resource ; + rdfs:label "RiceNetDB Gene" ; + rdfs:comment "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LOC_Os01g49190.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RICENETDB.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ricenetdb.gene:$1" . + +bioregistry.resource:ricenetdb.mirna a bioregistry.schema:resource ; + rdfs:label "RiceNetDB miRNA" ; + rdfs:comment "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "osa-miR446" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.mirna" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.mirna" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RICENETDB.MIRNA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^osa-miR\\d{3,5}[a-z]{0,1}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ricenetdb.mirna:$1" . + +bioregistry.resource:ricenetdb.protein a bioregistry.schema:resource ; + rdfs:label "RiceNetDB Protein" ; + rdfs:comment "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "LOC_Os01g49190" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RICENETDB.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^LOC\\_Os\\d{1,2}g\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ricenetdb.protein:$1" . + +bioregistry.resource:ricenetdb.reaction a bioregistry.schema:resource ; + rdfs:label "RiceNetDB Reaction" ; + rdfs:comment "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "OSR0818" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ricenetdb.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RICENETDB.REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^OSR\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ricenetdb.reaction:$1" . + +bioregistry.resource:rnacentral a bioregistry.schema:resource ; + rdfs:label "RNAcentral" ; + rdfs:comment "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases." ; + foaf:homepage "https://rnacentral.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "URS0000759CF4" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rnacentral" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rnacentral" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RNACENTRAL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RNAcentral" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RNAcentral" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^URS[0-9A-F]{10}(\\_\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rnacentral:$1" . + +bioregistry.resource:rnamod a bioregistry.schema:resource ; + rdfs:label "The RNA Modification Database" ; + rdfs:comment "None" ; + foaf:homepage "http://rna.rega.kuleuven.be/rnamods/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "051" ; + bioregistry.schema:provider_formatter "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1" . + +bioregistry.resource:rnamods a bioregistry.schema:resource ; + rdfs:label "RNA Modification Database" ; + rdfs:comment "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA." ; + foaf:homepage "https://mods.rna.albany.edu/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "101" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rnamods" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RNAmods" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rnamods" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RNAMODS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{3}$" ; 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+ bioregistry.schema:hasMetaidentifier "ROUGE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rouge" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^m\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/rouge:$1" . + +bioregistry.resource:rrid a bioregistry.schema:resource ; + rdfs:label "Research Resource Identification" ; + rdfs:comment """The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\r +The initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AB_262044" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rrid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RRID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rrid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^RRID:[a-zA-Z]+.+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/RRID:$1" . + +bioregistry.resource:rs a bioregistry.schema:resource ; + rdfs:label "Rat Strain Ontology" ; + rdfs:comment "Ontology of rat strains" ; + foaf:homepage "http://rgd.mcw.edu/rgdweb/search/strains.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "sjwang@mcw.edu" ; + bioregistry.schema:example "0001807" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_$1" . + +bioregistry.resource:runbiosimulations a bioregistry.schema:resource ; + rdfs:label "runBioSimulations" ; + rdfs:comment "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5fde96bdc5f1aa9ff0cce18a" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "runbiosimulations" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "[0-9a-z]{24,24}" ; + bioregistry.schema:provider_formatter "https://identifiers.org/runbiosimulations:$1" . + +bioregistry.resource:rxno a bioregistry.schema:resource ; + rdfs:label "Name Reaction Ontology" ; + rdfs:comment "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization." ; + foaf:homepage "https://github.com/rsc-ontologies/rxno" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo" ; + bioregistry.schema:email "batchelorc@rsc.org" ; + bioregistry.schema:example "0000253" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RXNO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RXNO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RXNO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rxno" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2106" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/rxno/terms?iri=http://purl.obolibrary.org/obo/RXNO_$1" . + +bioregistry.resource:rxnorm a bioregistry.schema:resource ; + rdfs:label "RxNorm" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "221058" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3345" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RXCUI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RXNORM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RXCUI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:pattern "^[0-9]{1,7}$" ; + bioregistry.schema:provider_formatter "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1" . + +bioregistry.resource:sabiork.compound a bioregistry.schema:resource ; + rdfs:label "SABIO-RK Compound" ; + rdfs:comment "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "75" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sabiork.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sabiork.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sabiork.compound:$1" . + +bioregistry.resource:sabiork.ec a bioregistry.schema:resource ; + rdfs:label "SABIO-RK EC Record" ; + rdfs:comment "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2.7.1.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SABIORK.EC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sabiork.ec" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sabiork.ec" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sabiork.ec:$1" . + +bioregistry.resource:sabiork.kineticrecord a bioregistry.schema:resource ; + rdfs:label "SABIO Reaction Kinetics" ; + rdfs:comment "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information." ; + foaf:homepage "http://sabio.villa-bosch.de/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5046" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SABIORK.KINETICRECORD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SABIO-RK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sabiork.kineticrecord" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sabiork.kineticrecord" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sabiork.kineticrecord:$1" . + +bioregistry.resource:sabiork.reaction a bioregistry.schema:resource ; + rdfs:label "SABIO-RK Reaction" ; + rdfs:comment "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "75" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sabiork.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sabiork.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SABIORK.REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sabiork.reaction:$1" . + +bioregistry.resource:sael a bioregistry.schema:resource ; + rdfs:label "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List (SAEL)" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true . + +bioregistry.resource:salk a bioregistry.schema:resource ; + rdfs:label "Salk Institute for Biological Studies Accession" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "037727" ; + bioregistry.schema:provider_formatter "https://abrc.osu.edu/stocks/number/SALK_$1" . + +bioregistry.resource:sao a bioregistry.schema:resource ; + rdfs:label "Subcellular Anatomy Ontology" ; + rdfs:comment "None" ; + foaf:homepage "http://ccdb.ucsd.edu/CCDBWebSite/sao.html" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "slarson@ncmir.ucsd.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:sasbdb a bioregistry.schema:resource ; + rdfs:label "Small Angle Scattering Biological Data Bank" ; + rdfs:comment "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SASDAX8" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SASBDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sasbdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SASBDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sasbdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sasbdb:$1" . + +bioregistry.resource:sbo a bioregistry.schema:resource ; + rdfs:label "Systems Biology Ontology" ; + rdfs:comment "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort." ; + foaf:homepage "http://www.ebi.ac.uk/sbo/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "sheriff@ebi.ac.uk" ; + bioregistry.schema:example "0000485" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sbo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sbo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sbo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^SBO:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/SBO:$1" . + +bioregistry.resource:scdo a bioregistry.schema:resource ; + rdfs:label "Sickle Cell Disease Ontology" ; + rdfs:comment "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease." ; + foaf:homepage "https://scdontology.h3abionet.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "giant.plankton@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SCDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "scdo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SCDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_$1" . + +bioregistry.resource:scop a bioregistry.schema:resource ; + rdfs:label "Structural Classification of Protein" ; + rdfs:comment "The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "47419" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "scop" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SCOP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "scop" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/scop:$1" . + +bioregistry.resource:scopus a bioregistry.schema:resource ; + rdfs:label "Scopus Researcher Identifier" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "56305849200" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ScopusID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:pattern "^\\d+$" . + +bioregistry.resource:scretf a bioregistry.schema:resource ; + rdfs:label "ScerTF" ; + rdfs:comment "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "RSC3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SCRETF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "scretf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "scretf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/scretf:$1" . + +bioregistry.resource:sdbs a bioregistry.schema:resource ; + rdfs:label "Spectral Database for Organic Compounds" ; + rdfs:comment "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4544" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sdbs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sdbs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SDBS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sdbs:$1" . + +bioregistry.resource:sdgio a bioregistry.schema:resource ; + rdfs:label "Sustainable Development Goals Interface Ontology" ; + rdfs:comment "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators." ; + foaf:homepage "https://github.com/SDG-InterfaceOntology/sdgio" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sdgio" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/sdgio/terms?iri=http://purl.obolibrary.org/obo/SDGIO_$1" . + +bioregistry.resource:seed a bioregistry.schema:resource ; + rdfs:label "The SEED;" ; + rdfs:comment "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems." ; + foaf:homepage "http://www.theseed.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Biotin_biosynthesis" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SEED" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SEED" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SEED" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "seed" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "seed" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/seed:$1" . + +bioregistry.resource:seed.compound a bioregistry.schema:resource ; + rdfs:label "SEED Compound" ; + rdfs:comment "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "cpd15380" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "seed.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "seed.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SEED.COMPOUND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^cpd\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/seed.compound:$1" . + +bioregistry.resource:seed.reaction a bioregistry.schema:resource ; + rdfs:label "SEED Reactions" ; + rdfs:comment "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "rxn00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "seed.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "seed.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^rxn\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/seed.reaction:$1" . + +bioregistry.resource:sepio a bioregistry.schema:resource ; + rdfs:label "Scientific Evidence and Provenance Information Ontology" ; + rdfs:comment "An ontology for representing the provenance of scientific claims and the evidence that supports them." ; + foaf:homepage "https://github.com/monarch-initiative/SEPIO-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mhb120@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SEPIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SEPIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SEPIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sepio" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/sepio/terms?iri=http://purl.obolibrary.org/obo/SEPIO_$1" . + +bioregistry.resource:sgd a bioregistry.schema:resource ; + rdfs:label "Saccharomyces Genome Database" ; + rdfs:comment "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae." ; + foaf:homepage "http://www.yeastgenome.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "S000002493" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sgd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3406" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sgd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sgd:$1" . + +bioregistry.resource:sgd.pathways a bioregistry.schema:resource ; + rdfs:label "Saccharomyces genome database pathways" ; + rdfs:comment "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PWY3O-214" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sgd.pathways" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SGD.PATHWAYS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sgd.pathways" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^PWY\\w{2}\\-\\d{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sgd.pathways:$1" . + +bioregistry.resource:sgn a bioregistry.schema:resource ; + rdfs:label "Sol Genomics Network" ; + rdfs:comment "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant." ; + foaf:homepage "https://www.sgn.cornell.edu/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sgn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sgn" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SGN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SGN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SGN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sgn:$1" . + +bioregistry.resource:sheepqtldb a bioregistry.schema:resource ; + rdfs:label "Animal Genome Sheep QTL" ; + rdfs:comment "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "19803" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sheepqtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SHEEPQTLDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sheepqtldb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sheepqtldb:$1" . + +bioregistry.resource:sibo a bioregistry.schema:resource ; + rdfs:label "Social Insect Behavior Ontology" ; + rdfs:comment "Social Behavior in insects" ; + foaf:homepage "https://github.com/obophenotype/sibo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "cjmungall@lbl.gov" ; + bioregistry.schema:example "0000509" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sibo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIBO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/sibo/terms?iri=http://purl.obolibrary.org/obo/SIBO_$1" . + +bioregistry.resource:sider.drug a bioregistry.schema:resource ; + rdfs:label "SIDER Drug" ; + rdfs:comment "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2244" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sider.drug" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIDER.DRUG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sider.drug" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sider.drug:$1" . + +bioregistry.resource:sider.effect a bioregistry.schema:resource ; + rdfs:label "SIDER Side Effect" ; + rdfs:comment "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C0017565" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIDER.EFFECT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sider.effect" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sider.effect" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^C\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sider.effect:$1" . + +bioregistry.resource:signaling-gateway a bioregistry.schema:resource ; + rdfs:label "Signaling Gateway" ; + rdfs:comment "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "A001094" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "signaling-gateway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "signaling-gateway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIGNALING-GATEWAY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "A\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/signaling-gateway:$1" . + +bioregistry.resource:signor a bioregistry.schema:resource ; + rdfs:label "Signaling Network Open Resource" ; + rdfs:comment "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SIGNOR-C41" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIGNOR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "signor" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^SIGNOR\\-[A-Z]+\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/signor:$1" . + +bioregistry.resource:sio a bioregistry.schema:resource ; + rdfs:label "Semanticscience Integrated Ontology" ; + rdfs:comment "The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes." ; + foaf:homepage "https://github.com/micheldumontier/semanticscience" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "sio-ontology@googlegroups.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sio" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/sio/terms?iri=http://purl.obolibrary.org/obo/SIO_$1" . + +bioregistry.resource:sisu a bioregistry.schema:resource ; + rdfs:label "Sequencing Initiative Suomi" ; + rdfs:comment "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "17:41223048" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sisu" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sisu" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SISU" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[0-9]+:[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sisu:$1" . + +bioregistry.resource:sitex a bioregistry.schema:resource ; + rdfs:label "SitEx" ; + rdfs:comment "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sitex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sitex" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SITEX" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sitex:$1" . + +bioregistry.resource:slm a bioregistry.schema:resource ; + rdfs:label "SwissLipids" ; + rdfs:comment "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "000048885" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "slm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^SLM:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/SLM:$1" . + +bioregistry.resource:smart a bioregistry.schema:resource ; + rdfs:label "Simple Modular Architecture Research Tool" ; + rdfs:comment "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures." ; + foaf:homepage "http://smart.embl-heidelberg.de/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SM00015" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SMART" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "smart" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SMART" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SMART" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "smart" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^SM\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/smart:$1" . + +bioregistry.resource:smid a bioregistry.schema:resource ; + rdfs:label "C. elegans Small Molecule Identifier Database" ; + rdfs:comment "None" ; + foaf:homepage "https://smid-db.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "137" ; + bioregistry.schema:provider_formatter "https://smid-db.org/smid/$1" . + +bioregistry.resource:smiles a bioregistry.schema:resource ; + rdfs:label "Simplified molecular-input line-entry system" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "COc1ccc2c(c1)OC[C@H]1[C@@H]2C2=C(OC1(C)C)C1=C(C(=O)C2=O)[C@H]2c3ccc(OC)cc3OC[C@H]2C(C)(C)O1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P233" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] . + +bioregistry.resource:smpdb a bioregistry.schema:resource ; + rdfs:label "Small Molecule Pathway Database" ; + rdfs:comment "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SMP0000219" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SMPDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "smpdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PathWhiz" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "smpdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^SMP\\d+$" ; + bioregistry.schema:provider_formatter "https://smpdb.ca/view/$1" . + +bioregistry.resource:snap a bioregistry.schema:resource ; + rdfs:label "Snapshot" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:snomedct a bioregistry.schema:resource ; + rdfs:label "SNOMED CT" ; + rdfs:comment "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc." ; + foaf:homepage "http://snomed.info/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "284196006" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SNOMEDCT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "snomedct" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P5806" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "snomedct" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SNOMED" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^(\\w+)?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/snomedct:$1" . + +bioregistry.resource:snornabase a bioregistry.schema:resource ; + rdfs:label "snoRNABase" ; + rdfs:comment """A comprehensive database of + +human H/ACA and C/D box snoRNAs.""" ; + foaf:homepage "https://www-snorna.biotoul.fr/" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:snp2tfbs a bioregistry.schema:resource ; + rdfs:label "SNP to Transcription Factor Binding Sites" ; + rdfs:comment "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "rs11603840" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "snp2tfbs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^rs[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/snp2tfbs:$1" . + +bioregistry.resource:so a bioregistry.schema:resource ; + rdfs:label "Sequence types and features ontology" ; + rdfs:comment "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data." ; + foaf:homepage "https://github.com/The-Sequence-Ontology/SO-Ontologies" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo" ; + bioregistry.schema:email "keilbeck@genetics.utah.edu" ; + bioregistry.schema:example "0001157" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "so" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "so" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "so" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^SO:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/SO:$1" . + +bioregistry.resource:soybase a bioregistry.schema:resource ; + rdfs:label "Glycine max Genome Database" ; + rdfs:comment "SoyBase is a repository for curated genetics, genomics and related data resources for soybean." ; + foaf:homepage "http://soybase.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BARC-013845-01256" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "soybase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SOYBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SoyBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "soybase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+(\\-)?\\w+(\\-)?\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/soybase:$1" . + +bioregistry.resource:span a bioregistry.schema:resource ; + rdfs:label "Span" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:spd a bioregistry.schema:resource ; + rdfs:label "Spider Ontology" ; + rdfs:comment "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)." ; + foaf:homepage "http://research.amnh.org/atol/files/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "ramirez@macn.gov.ar" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P4537" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SPD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SPD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SPD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "spd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/spd/terms?iri=http://purl.obolibrary.org/obo/SPD_$1" . + +bioregistry.resource:spdx a bioregistry.schema:resource ; + rdfs:label "Software Package Data Exchange License" ; + rdfs:comment "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception." ; + foaf:homepage "https://spdx.org/licenses" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CC-BY-1.0" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "spdx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "spdx" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[0-9A-Za-z\\-.]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/spdx:$1" . + +bioregistry.resource:spike.map a bioregistry.schema:resource ; + rdfs:label "SPIKE Map" ; + rdfs:comment "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "spike00001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "spike.map" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "spike.map" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SPIKE.MAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^spike\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/spike.map:$1" . + +bioregistry.resource:splash a bioregistry.schema:resource ; + rdfs:label "Spectra Hash Code" ; + rdfs:comment "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "splash10-0zq2000000-77302b0326a418630a84" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "splash" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "splash" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SPLASH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/splash:$1" . + +bioregistry.resource:spp a bioregistry.schema:resource ; + rdfs:label "Signaling Pathways Project" ; + rdfs:comment "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10.1621/vwN2g2HaX3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "spp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^10.\\w{4}/\\w{10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/spp:$1" . + +bioregistry.resource:srao a bioregistry.schema:resource ; + rdfs:label "FAIRsharing Subject Ontology" ; + rdfs:comment "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies." ; + foaf:homepage "https://github.com/FAIRsharing/subject-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "contact@fairsharing.org" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "srao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/srao/terms?iri=http://purl.obolibrary.org/obo/SRAO_$1" . + +bioregistry.resource:stap a bioregistry.schema:resource ; + rdfs:label "Statistical Torsional Angles Potentials" ; + rdfs:comment "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB)." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1a24" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "stap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "STAP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "stap" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9][A-Za-z0-9]{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/stap:$1" . + +bioregistry.resource:stato a bioregistry.schema:resource ; + rdfs:label "The Statistical Methods Ontology" ; + rdfs:comment "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots." ; + foaf:homepage "http://stato-ontology.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "alejandra.gonzalez.beltran@gmail.com" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "STATO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "STATO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "stato" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "STATO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_$1" . + +bioregistry.resource:stitch a bioregistry.schema:resource ; + rdfs:label "Search Tool for Interactions of Chemicals" ; + rdfs:comment "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BQJCRHHNABKAKU" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "STITCH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "stitch" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "stitch" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w{14}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/stitch:$1" . + +bioregistry.resource:storedb a bioregistry.schema:resource ; + rdfs:label "Store DB" ; + rdfs:comment "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "STOREDB:STUDY1040" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "storedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "STOREDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "storedb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^STOREDB:(STUDY|FILE|DATASET)\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/storedb:$1" . + +bioregistry.resource:string a bioregistry.schema:resource ; + rdfs:label "Search Tool for Retrieval of Interacting Genes/Proteins" ; + rdfs:comment """STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r +The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P53350" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "STRING" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "string" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "STRING" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "string" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/string:$1" . + +bioregistry.resource:subtilist a bioregistry.schema:resource ; + rdfs:label "Bacillus subtilis genome sequencing project" ; + rdfs:comment """SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r +SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.""" ; + foaf:homepage "http://genolist.pasteur.fr/SubtiList/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BG11523" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SubtiList" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "subtilist" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SUBTILIST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "subtilist" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^BG\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/subtilist:$1" . + +bioregistry.resource:subtiwiki a bioregistry.schema:resource ; + rdfs:label "SubtiWiki" ; + rdfs:comment """SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \r +Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BSU29180" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "subtiwiki" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SUBTIWIKI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "subtiwiki" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^BSU\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/subtiwiki:$1" . + +bioregistry.resource:sugarbind a bioregistry.schema:resource ; + rdfs:label "SugarBind" ; + rdfs:comment "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "lectins/172" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sugarbind" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "sugarbind" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SUGARBIND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z]+\\/[0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/sugarbind:$1" . + +bioregistry.resource:supfam a bioregistry.schema:resource ; + rdfs:label "SUPERFAMILY" ; + rdfs:comment "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SSF57615" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SUPFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SUPFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "supfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "supfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/supfam:$1" . + +bioregistry.resource:swh a bioregistry.schema:resource ; + rdfs:label "Software Heritage" ; + rdfs:comment "Software Heritage is the universal archive of software source code." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "swh" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SWH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "swh" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^swh:[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/SWH:$1" . + +bioregistry.resource:swiss-model a bioregistry.schema:resource ; + rdfs:label "SWISS-MODEL Repository" ; + rdfs:comment "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P23298" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "swiss-model" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "swiss-model" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SWISS-MODEL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/swiss-model:$1" . + +bioregistry.resource:swisslipid a bioregistry.schema:resource ; + rdfs:label "SwissLipid" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SLM:000000341" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P8691" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "swisslipid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SWISSLIPID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://www.swisslipids.org/#/entity/$1" . + +bioregistry.resource:swissregulon a bioregistry.schema:resource ; + rdfs:label "SwissRegulon" ; + rdfs:comment "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AHR" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "swissregulon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "swissregulon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SWISSREGULON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/swissregulon:$1" . + +bioregistry.resource:swo a bioregistry.schema:resource ; + rdfs:label "Software ontology" ; + rdfs:comment "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community." ; + foaf:homepage "https://github.com/allysonlister/swo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/allysonlister/swo/raw/master/release/swo.owl" ; + bioregistry.schema:email "allyson.lister@oerc.ox.ac.uk" ; + bioregistry.schema:example "0000144" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SWO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SWO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SWO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "swo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/swo/terms?iri=http://purl.obolibrary.org/obo/SWO_$1" . + +bioregistry.resource:symp a bioregistry.schema:resource ; + rdfs:label "Symptom Ontology" ; + rdfs:comment "The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases." ; + foaf:homepage "http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "lynn.schriml@gmail.com" ; + bioregistry.schema:example "0019171" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "symp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P8656" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SYMP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SYMP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "SYMP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_$1" . + +bioregistry.resource:syoid a bioregistry.schema:resource ; + rdfs:label "Gemina Symptom Ontology Identifier" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true . + +bioregistry.resource:t3db a bioregistry.schema:resource ; + rdfs:label "Toxin and Toxin Target Database" ; + rdfs:comment "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "T3D0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "t3db" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "t3db" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "T3DB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^T3D\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/t3db:$1" . + +bioregistry.resource:tads a bioregistry.schema:resource ; + rdfs:label "Tick Anatomy Ontology" ; + rdfs:comment "The anatomy of the Tick, Families: Ixodidae, Argassidae" ; + foaf:homepage "https://www.vectorbase.org/ontology-browser" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/tads.obo" ; + bioregistry.schema:email "dsonensh@odu.edu" ; + bioregistry.schema:example "0000547" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tads" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TADS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TADS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TADS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/tads/terms?iri=http://purl.obolibrary.org/obo/TADS_$1" . + +bioregistry.resource:tair.gene a bioregistry.schema:resource ; + rdfs:label "TAIR Gene" ; + rdfs:comment "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Gene:2200934" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tair.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tair.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAIR.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^Gene:\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tair.gene:$1" . + +bioregistry.resource:tair.locus a bioregistry.schema:resource ; + rdfs:label "The Arabidopsis Information Resource" ; + rdfs:comment "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS." ; + foaf:homepage "http://www.arabidopsis.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2200950" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tair.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAIR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAIR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tair.locus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAIR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tair.locus:$1" . + +bioregistry.resource:tair.protein a bioregistry.schema:resource ; + rdfs:label "TAIR Protein" ; + rdfs:comment "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AASequence:1009107926" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tair.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAIR.PROTEIN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tair.protein" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^AASequence:\\d{10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tair.protein:$1" . + +bioregistry.resource:tao a bioregistry.schema:resource ; + rdfs:label "Teleost Anatomy Ontology" ; + rdfs:comment "None" ; + foaf:homepage "http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "wasila.dahdul@usd.edu" ; + bioregistry.schema:example "0000086" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:tarbase a bioregistry.schema:resource ; + rdfs:label "TarBase" ; + rdfs:comment "TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "hsa-let-7a-2-3p" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tarbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TARBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tarbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)?" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tarbase:$1" . + +bioregistry.resource:taxrank a bioregistry.schema:resource ; + rdfs:label "Taxonomic rank vocabulary" ; + rdfs:comment "A vocabulary of taxonomic ranks (species, family, phylum, etc)" ; + foaf:homepage "https://github.com/phenoscape/taxrank" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "balhoff@renci.org" ; + bioregistry.schema:example "0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAXRANK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAXRANK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "taxrank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TAXRANK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_$1" . + +bioregistry.resource:tcdb a bioregistry.schema:resource ; + rdfs:label "Transport Protein Database" ; + rdfs:comment "The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally." ; + foaf:homepage "https://www.tcdb.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "5.A.1.1.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P7260" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tcdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TCDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TCDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tcdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tcdb:$1" . + +bioregistry.resource:te a bioregistry.schema:resource ; + rdfs:label "Terminologia Embryologica" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "E5.11.2.0.0.0.4" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P1693" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] . + +bioregistry.resource:tfclass a bioregistry.schema:resource ; + rdfs:label "Classification of Transcription Factors in Mammalia" ; + rdfs:comment "None" ; + foaf:homepage "http://tfclass.bioinf.med.uni-goettingen.de" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2.1.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TFClass" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:provider_formatter "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1" . + +bioregistry.resource:tgd a bioregistry.schema:resource ; + rdfs:label "Tetrahymena Genome Database" ; + rdfs:comment "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature." ; + foaf:homepage "http://www.ciliate.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TTHERM_00648910" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TGD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tgd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tgd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^TTHERM\\_\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tgd:$1" . + +bioregistry.resource:tgma a bioregistry.schema:resource ; + rdfs:label "Mosquito gross anatomy ontology" ; + rdfs:comment "A structured controlled vocabulary of the anatomy of mosquitoes." ; + foaf:homepage "https://www.vectorbase.org/ontology-browser" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/tgma.obo" ; + bioregistry.schema:email "topalis@imbb.forth.gr" ; + bioregistry.schema:example "0000984" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TGMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TGMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tgma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TGMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/tgma/terms?iri=http://purl.obolibrary.org/obo/TGMA_$1" . + +bioregistry.resource:th a bioregistry.schema:resource ; + rdfs:label "Terminologia Histologica" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "H3.03.00.0.00007" . + +bioregistry.resource:tigrfam a bioregistry.schema:resource ; + rdfs:label "TIGR protein families" ; + rdfs:comment "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins." ; + foaf:homepage "http://www.tigr.org/TIGRFAMs/index.shtml" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TIGR00010" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tigrfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tigrfam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TIGRFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TIGRFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ] ; + bioregistry.schema:pattern "^TIGR\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tigrfam:$1" . + +bioregistry.resource:tissuelist a bioregistry.schema:resource ; + rdfs:label "Tissue List" ; + rdfs:comment "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TS-0285" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tissuelist" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tissuelist" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TISSUELIST" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^TS-\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tissuelist:$1" . + +bioregistry.resource:to a bioregistry.schema:resource ; + rdfs:label "Plant Trait Ontology" ; + rdfs:comment "A controlled vocabulary of describe phenotypic traits in plants." ; + foaf:homepage "http://browser.planteome.org/amigo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jaiswalp@science.oregonstate.edu" ; + bioregistry.schema:example "0000630" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "to" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_$1" . + +bioregistry.resource:tol a bioregistry.schema:resource ; + rdfs:label "Tree of Life" ; + rdfs:comment """The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). \r +\r +Each page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things.""" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "98034" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TOL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tol:$1" . + +bioregistry.resource:topdb a bioregistry.schema:resource ; + rdfs:label "Topology Data Bank of Transmembrane Proteins" ; + rdfs:comment "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "AP00378" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "topdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TOPDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "topdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/topdb:$1" . + +bioregistry.resource:topfind a bioregistry.schema:resource ; + rdfs:label "TopFind" ; + rdfs:comment "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli." ; + foaf:homepage "https://topfind.clip.msl.ubc.ca" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Q9UKQ2" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "topfind" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "topfind" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TOPFIND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/topfind:$1" . + +bioregistry.resource:toxoplasma a bioregistry.schema:resource ; + rdfs:label "ToxoDB" ; + rdfs:comment "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TGME49_053730" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TOXOPLASMA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "toxoplasma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "toxoplasma" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/toxoplasma:$1" . + +bioregistry.resource:trans a bioregistry.schema:resource ; + rdfs:label "Pathogen Transmission Ontology" ; + rdfs:comment "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles." ; + foaf:homepage "https://github.com/DiseaseOntology/PathogenTransmissionOntology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "lynn.schriml@gmail.com" ; + bioregistry.schema:example "0000024" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "trans" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TRANS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TRANS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TRANS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_$1" . + +bioregistry.resource:transyt a bioregistry.schema:resource ; + rdfs:label "Transport Systems Tracker" ; + rdfs:comment "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TR0000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "transyt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "T[A-Z]\\d{7}" ; + bioregistry.schema:provider_formatter "https://identifiers.org/transyt:$1" . + +bioregistry.resource:treebase a bioregistry.schema:resource ; + rdfs:label "TreeBASE" ; + rdfs:comment "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TB2:S1000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TREEBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "treebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "treebase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^TB[1,2]?:[A-Z][a-z]?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/treebase:$1" . + +bioregistry.resource:treefam a bioregistry.schema:resource ; + rdfs:label "TreeFam" ; + rdfs:comment "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TF101014" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TreeFam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "treefam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TREEFAM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "treefam" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\w{1,2}\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/treefam:$1" . + +bioregistry.resource:trichdb a bioregistry.schema:resource ; + rdfs:label "TrichDB" ; + rdfs:comment "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TVAG_386080" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "trichdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "trichdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TRICHDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/trichdb:$1" . + +bioregistry.resource:tritrypdb a bioregistry.schema:resource ; + rdfs:label "TriTrypDB" ; + rdfs:comment "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Tb927.8.620" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tritrypdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tritrypdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TRITRYPDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+(\\.)?\\w+(\\.)?\\w+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/tritrypdb:$1" . + +bioregistry.resource:ttd.drug a bioregistry.schema:resource ; + rdfs:label "TTD Drug" ; + rdfs:comment "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DAP000773" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TTD.DRUG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ttd.drug" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ttd.drug" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^DAP\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ttd.drug:$1" . + +bioregistry.resource:ttd.target a bioregistry.schema:resource ; + rdfs:label "TTD Target" ; + rdfs:comment "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "TTDS00056" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ttd.target" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TTD.TARGET" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ttd.target" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^TTDS\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ttd.target:$1" . + +bioregistry.resource:tto a bioregistry.schema:resource ; + rdfs:label "Teleost taxonomy ontology" ; + rdfs:comment "An ontology covering the taxonomy of teleosts (bony fish)" ; + foaf:homepage "https://github.com/phenoscape/teleost-taxonomy-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "balhoff@renci.org" ; + bioregistry.schema:example "1058367" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "tto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/tto/terms?iri=http://purl.obolibrary.org/obo/TTO_$1" . + +bioregistry.resource:txpo a bioregistry.schema:resource ; + rdfs:label "Toxic Process Ontology" ; + rdfs:comment """Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity. + +The TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms. + +In applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp""" ; + foaf:homepage "https://toxpilot.nibiohn.go.jp/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "y-yamagata@nibiohn.go.jp" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "txpo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TXPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "TXPO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/txpo/terms?iri=http://purl.obolibrary.org/obo/TXPO_$1" . + +bioregistry.resource:uberon a bioregistry.schema:resource ; + rdfs:label "Uber Anatomy Ontology" ; + rdfs:comment "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data." ; + foaf:homepage "http://uberon.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "http://purl.obolibrary.org/obo/uberon/basic.obo" ; + bioregistry.schema:email "cjmungall@lbl.gov" ; + bioregistry.schema:example "2005080" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UBERON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uberon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uberon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UBERON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UBERON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uberon" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P1554" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UBERON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^UBERON:\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/UBERON:$1" . + +bioregistry.resource:ubio.namebank a bioregistry.schema:resource ; + rdfs:label "uBio NameBank" ; + rdfs:comment "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2555646" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UBIO.NAMEBANK" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ubio.namebank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ubio.namebank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ubio.namebank:$1" . + +bioregistry.resource:ubprop a bioregistry.schema:resource ; + rdfs:label "Uberon Property" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true . + +bioregistry.resource:ucsc a bioregistry.schema:resource ; + rdfs:label "UCSC Genome Browser" ; + rdfs:comment "None" ; + foaf:homepage "https://genome.ucsc.edu/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "uc001rvw.5" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UCSC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2576" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UCSC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:umbbd.compound a bioregistry.schema:resource ; + rdfs:label "UM-BBD Compound" ; + rdfs:comment "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "c0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P8121" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UMBBD.COMPOUND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^c\\d+$" ; + bioregistry.schema:provider_formatter "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1" . + +bioregistry.resource:umbbd.enzyme a bioregistry.schema:resource ; + rdfs:label "EAWAG Biocatalysis/Biodegradation Database" ; + rdfs:comment "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information." ; + foaf:homepage "http://eawag-bbd.ethz.ch/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "e0333" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UM-BBD_enzymeID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.enzyme" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.enzyme" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UMBBD.ENZYME" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^e\\d+$" ; + bioregistry.schema:provider_formatter "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1" . + +bioregistry.resource:umbbd.pathway a bioregistry.schema:resource ; + rdfs:label "EAWAG Biocatalysis/Biodegradation Database" ; + rdfs:comment "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information." ; + foaf:homepage "http://eawag-bbd.ethz.ch/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ala" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UM-BBD_pathwayID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.pathway" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UMBBD.PATHWAY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "http://eawag-bbd.ethz.ch/$1/$1_map.html" . + +bioregistry.resource:umbbd.reaction a bioregistry.schema:resource ; + rdfs:label "EAWAG Biocatalysis/Biodegradation Database" ; + rdfs:comment "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information." ; + foaf:homepage "http://eawag-bbd.ethz.ch/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "r0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UM-BBD_reactionID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UMBBD.REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^r\\d+$" ; + bioregistry.schema:provider_formatter "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1" . + +bioregistry.resource:umbbd.rule a bioregistry.schema:resource ; + rdfs:label "EAWAG Biocatalysis/Biodegradation Database" ; + rdfs:comment "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules." ; + foaf:homepage "http://eawag-bbd.ethz.ch/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "bt0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.rule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UMBBD.RULE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UM-BBD_ruleID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umbbd.rule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^bt\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/umbbd.rule:$1" . + +bioregistry.resource:umls a bioregistry.schema:resource ; + rdfs:label "Unified Medical Language System" ; + rdfs:comment "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C2584994" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2892" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UMLS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umls" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "umls" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^C\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/umls:$1" . + +bioregistry.resource:unigene a bioregistry.schema:resource ; + rdfs:label "UniGene" ; + rdfs:comment "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4900" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unigene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNIGENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unigene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/unigene:$1" . + +bioregistry.resource:unii a bioregistry.schema:resource ; + rdfs:label "Unique Ingredient Identifier" ; + rdfs:comment "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3G6A5W338E" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unii" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unii" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P652" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNII" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/unii:$1" . + +bioregistry.resource:unimod a bioregistry.schema:resource ; + rdfs:label "Unimod protein modification database for mass spectrometry" ; + rdfs:comment "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide)." ; + foaf:homepage "http://www.unimod.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "psidev-ms-vocab@lists.sourceforge.net" ; + bioregistry.schema:example "1200" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unimod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unimod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNIMOD" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unimod" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/unimod:$1" . + +bioregistry.resource:uniparc a bioregistry.schema:resource ; + rdfs:label "UniProt Archive" ; + rdfs:comment "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases." ; + foaf:homepage "https://www.uniprot.org/uniparc/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "UPI000000000A" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNIPARC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uniparc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uniparc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UniParc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^UPI[A-F0-9]{10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/uniparc:$1" . + +bioregistry.resource:unipathway.compound a bioregistry.schema:resource ; + rdfs:label "UniPathway Compound" ; + rdfs:comment "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "UPC04349" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNIPATHWAY.COMPOUND" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unipathway.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unipathway.compound" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^UPC\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/unipathway.compound:$1" . + +bioregistry.resource:unipathway.reaction a bioregistry.schema:resource ; + rdfs:label "UniPathway Reaction" ; + rdfs:comment "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "UCR00226" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNIPATHWAY.REACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unipathway.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unipathway.reaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^UCR\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/unipathway.reaction:$1" . + +bioregistry.resource:uniprot.chain a bioregistry.schema:resource ; + rdfs:label "UniProt Chain" ; + rdfs:comment "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PRO_0000016681" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uniprot.chain" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^PRO_[0-9]{10}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/uniprot.chain:$1" . + +bioregistry.resource:uniprot.disease a bioregistry.schema:resource ; + rdfs:label "UniProt Diseases" ; + rdfs:comment "None" ; + foaf:homepage "https://www.uniprot.org/diseases/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "04240" ; + bioregistry.schema:provider_formatter "https://www.uniprot.org/diseases/DI-$1" . + +bioregistry.resource:uniprot.isoform a bioregistry.schema:resource ; + rdfs:label "UniProt Isoform" ; + rdfs:comment "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Q5BJF6-3" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uniprot.isoform" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNIPROT.ISOFORM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uniprot.isoform" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/uniprot.isoform:$1" . + +bioregistry.resource:uniprot.keyword a bioregistry.schema:resource ; + rdfs:label "UniProt Keywords" ; + rdfs:comment "None" ; + foaf:homepage "http://www.uniprot.org/keywords/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "KW-1273" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UniProtKB-KW" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:provider_formatter "https://www.uniprot.org/keywords/$1" . + +bioregistry.resource:uniprot.location a bioregistry.schema:resource ; + rdfs:label "UniProt Subcellular Locations" ; + rdfs:comment "None" ; + foaf:homepage "https://www.uniprot.org/locations/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0002" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UniProtKB-SubCell" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.uniprot.org/locations/SL-$1" . + +bioregistry.resource:uniprot.var a bioregistry.schema:resource ; + rdfs:label "UniProt Variants" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "VAR_068078" ; + bioregistry.schema:pattern "^VAR_\\d+$" ; + bioregistry.schema:provider_formatter "https://web.expasy.org/variant_pages/$1.html" . + +bioregistry.resource:unirule a bioregistry.schema:resource ; + rdfs:label "UniRule" ; + rdfs:comment "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites." ; + foaf:homepage "https://www.uniprot.org/unirule/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "UR000124451" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UniRule" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:provider_formatter "https://www.uniprot.org/unirule/$1" . + +bioregistry.resource:unists a bioregistry.schema:resource ; + rdfs:label "Database of Sequence Tagged Sites" ; + rdfs:comment "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "456789" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UniSTS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unists" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unists" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNISTS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/unists:$1" . + +bioregistry.resource:unite a bioregistry.schema:resource ; + rdfs:label "Molecular database for the identification of fungi" ; + rdfs:comment "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa." ; + foaf:homepage "http://unite.ut.ee/index.php" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "UDB000691" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "unite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNITE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UNITE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^UDB\\d{6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/unite:$1" . + +bioregistry.resource:unpd a bioregistry.schema:resource ; + rdfs:label "Universal Natural Products Database" ; + rdfs:comment "None" ; + foaf:homepage "http://pkuxxj.pku.edu.cn/UNPD/" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:uo a bioregistry.schema:resource ; + rdfs:label "Units of measurement ontology" ; + rdfs:comment "Ontology of standardized units" ; + foaf:homepage "https://github.com/bio-ontology-research-group/unit-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "g.gkoutos@gmail.com" ; + bioregistry.schema:example "0000080" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; 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As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4145692" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "USPTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uspto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uspto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(D|PP|R|T|H|X|AI)?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/uspto:$1" . + +bioregistry.resource:validatordb a bioregistry.schema:resource ; + rdfs:label "ValidatorDB" ; + rdfs:comment "Database of validation results for ligands and non-standard residues in the Protein Data Bank." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2h6o" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "validatordb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VALIDATORDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "validatordb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Za-z0-9\\/]+$" ; + bioregistry.schema:provider_formatter "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1" ; + bioregistry.schema:provides bioregistry.resource:pdb . + +bioregistry.resource:vandf a bioregistry.schema:resource ; + rdfs:label "Veterans Administration National Drug File" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "4019477" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VANDF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VANDF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:vario a bioregistry.schema:resource ; + rdfs:label "Variation Ontology" ; + rdfs:comment "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level." ; + foaf:homepage "http://variationontology.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "mauno.vihinen@med.lu.se" ; + bioregistry.schema:example "0376" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vario" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vario" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vario" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VARIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VARIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VARIO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vario:$1" . + +bioregistry.resource:vbase2 a bioregistry.schema:resource ; + rdfs:label "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse" ; + rdfs:comment "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes." ; + foaf:homepage "http://www.vbase2.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "humIGHV025" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vbase2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VBASE2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vbase2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VBASE2" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vbase2:$1" . + +bioregistry.resource:vbrc a bioregistry.schema:resource ; + rdfs:label "Viral Bioinformatics Resource Center" ; + rdfs:comment "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "35742" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VBRC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vbrc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vbrc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vbrc:$1" . + +bioregistry.resource:vectorbase a bioregistry.schema:resource ; + rdfs:label "Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens" ; + rdfs:comment "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis." ; + foaf:homepage "http://www.vectorbase.org/index.php" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ISCW007415" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vectorbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VECTORBASE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vectorbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VectorBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ] ; + bioregistry.schema:pattern "^\\D{4}\\d{6}(\\-\\D{2})?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vectorbase:$1" . + +bioregistry.resource:vega a bioregistry.schema:resource ; + rdfs:label "Vertebrate Genome Annotation Database" ; + rdfs:comment "None" ; + foaf:homepage "https://vega.archive.ensembl.org/index.html" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "OTTHUMG00000169812" . + +bioregistry.resource:vegbank a bioregistry.schema:resource ; + rdfs:label "VegBank" ; + rdfs:comment "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. " ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "VB.Ob.3736.GRSM125" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vegbank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^VB\\.[A-Za-z][A-Za-z]\\..*$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vegbank:$1" . + +bioregistry.resource:vfb a bioregistry.schema:resource ; + rdfs:label "Virtual Fly Brain" ; + rdfs:comment "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "00000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vfb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vfb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[0-9a-zA-Z]{8}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vfb:$1" . + +bioregistry.resource:vfdb.gene a bioregistry.schema:resource ; + rdfs:label "VFDB Gene" ; + rdfs:comment "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "VFG2154" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vfdb.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vfdb.gene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VFDB.GENE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vfdb.gene:$1" . + +bioregistry.resource:vfdb.genus a bioregistry.schema:resource ; + rdfs:label "VFDB Genus" ; + rdfs:comment "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Chlamydia" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VFDB.GENUS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vfdb.genus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vfdb.genus" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\w+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vfdb.genus:$1" . + +bioregistry.resource:vgnc a bioregistry.schema:resource ; + rdfs:label "Vertebrate Gene Nomenclature Committee" ; + rdfs:comment "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee." ; + foaf:homepage "http://vertebrate.genenames.org/data/gene-symbol-report/#!/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "VGNC:3792" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VGNC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vgnc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VGNC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ] ; + bioregistry.schema:pattern "^((VGNC|vgnc):)?\\d{1,9}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vgnc:$1" . + +bioregistry.resource:vhog a bioregistry.schema:resource ; + rdfs:label "Vertebrate Homologous Organ Group Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:download "ftp://ftp.bgee.org/general/ontologies/vHOG.obo" ; + bioregistry.schema:example "0000411" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VHOG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VHOG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VHOG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] . + +bioregistry.resource:viaf a bioregistry.schema:resource ; + rdfs:label "Virtual International Authority File" ; + rdfs:comment "The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "75121530" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "viaf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "viaf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/viaf:$1" . + +bioregistry.resource:vido a bioregistry.schema:resource ; + rdfs:label "The Virus Infectious Disease Ontology" ; + rdfs:comment "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc." ; + foaf:homepage "https://github.com/infectious-disease-ontology-extensions/ido-virus" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "johnbeverley2021@u.northwestern.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vido" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VIDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/vido/terms?iri=http://purl.obolibrary.org/obo/VIDO_$1" . + +bioregistry.resource:vipr a bioregistry.schema:resource ; + rdfs:label "Virus Pathogen Resource" ; + rdfs:comment "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information." ; + foaf:homepage "http://www.viprbrc.org/brc/home.do?decorator=vipr" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "BeAn 70563" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vipr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vipr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ViPR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VIPR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z 0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vipr:$1" . + +bioregistry.resource:viralzone a bioregistry.schema:resource ; + rdfs:label "ViralZone" ; + rdfs:comment "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "992" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "viralzone" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "viralzone" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VIRALZONE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/viralzone:$1" . + +bioregistry.resource:virsirna a bioregistry.schema:resource ; + rdfs:label "VIRsiRNA" ; + rdfs:comment "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "virsi1909" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "virsirna" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "virsirna" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VIRSIRNA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^virsi\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/virsirna:$1" . + +bioregistry.resource:vmc a bioregistry.schema:resource ; + rdfs:label "Variation Modelling Collaboration" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VMC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:vmhgene a bioregistry.schema:resource ; + rdfs:label "VMH Gene" ; + rdfs:comment "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "8639.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vmhgene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^[0-9]+\\.[0-9]+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vmhgene:$1" . + +bioregistry.resource:vmhmetabolite a bioregistry.schema:resource ; + rdfs:label "VMH metabolite" ; + rdfs:comment "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "h2o" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vmhmetabolite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VMHMETABOLITE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vmhmetabolite" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vmhmetabolite:$1" . + +bioregistry.resource:vmhreaction a bioregistry.schema:resource ; + rdfs:label "VMH reaction" ; + rdfs:comment "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "HEX1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VMHREACTION" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vmhreaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vmhreaction" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "[a-zA-Z0-9_\\(\\_\\)\\[\\]]+" ; + bioregistry.schema:provider_formatter "https://identifiers.org/vmhreaction:$1" . + +bioregistry.resource:vo a bioregistry.schema:resource ; + rdfs:label "Vaccine Ontology" ; + rdfs:comment "The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities." ; + foaf:homepage "http://www.violinet.org/vaccineontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "yongqunh@med.umich.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/vo/terms?iri=http://purl.obolibrary.org/obo/VO_$1" . + +bioregistry.resource:vsao a bioregistry.schema:resource ; + rdfs:label "Vertebrate Skeletal Anatomy Ontology" ; + rdfs:comment "None" ; + foaf:homepage "https://www.nescent.org/phenoscape/Main_Page" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "wasila.dahdul@usd.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VSAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VSAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VSAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:vsdb a bioregistry.schema:resource ; + rdfs:label "Veterinary Substances DataBase" ; + rdfs:comment "None" ; + foaf:homepage "https://sitem.herts.ac.uk/aeru/vsdb" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1868" ; + bioregistry.schema:provider_formatter "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm" . + +bioregistry.resource:vt a bioregistry.schema:resource ; + rdfs:label "Vertebrate trait ontology" ; + rdfs:comment "An ontology of traits covering vertebrates" ; + foaf:homepage "https://github.com/AnimalGenome/vertebrate-trait-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "caripark@iastate.edu" ; + bioregistry.schema:example "0000685" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/vt/terms?iri=http://purl.obolibrary.org/obo/VT_$1" . + +bioregistry.resource:vto a bioregistry.schema:resource ; + rdfs:label "Vertebrate Taxonomy Ontology" ; + rdfs:comment "Comprehensive hierarchy of extinct and extant vertebrate taxa." ; + foaf:homepage "https://github.com/phenoscape/vertebrate-taxonomy-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "balhoff@renci.org" ; + bioregistry.schema:example "9008500" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VTO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "vto" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/vto/terms?iri=http://purl.obolibrary.org/obo/VTO_$1" . + +bioregistry.resource:vuid a bioregistry.schema:resource ; + rdfs:label "Veterans Health Administration (VHA) unique identifier" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false . + +bioregistry.resource:vz a bioregistry.schema:resource ; + rdfs:label "ViralZone" ; + rdfs:comment "None" ; + foaf:homepage "http://viralzone.expasy.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "886" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "VZ" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:provider_formatter "https://viralzone.expasy.org/$1" . + +bioregistry.resource:wb a bioregistry.schema:resource ; + rdfs:label "WormBase database of nematode biology" ; + rdfs:comment "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities." ; + foaf:homepage "http://www.wormbase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "WBGene00000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WBVocab" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^WB[A-Z][a-z]+\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/wb:$1" . + +bioregistry.resource:wb.rnai a bioregistry.schema:resource ; + rdfs:label "WormBase RNAi" ; + rdfs:comment "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "WBRNAi00086878" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wb.rnai" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WB.RNAI" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wb.rnai" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^WBRNAi\\d{8}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/wb.rnai:$1" . + +bioregistry.resource:wbbt a bioregistry.schema:resource ; + rdfs:label "C. elegans Gross Anatomy Ontology" ; + rdfs:comment "Ontology about the gross anatomy of the C. elegans" ; + foaf:homepage "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "raymond@caltech.edu" ; + bioregistry.schema:example "0001290" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WBbt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wbbt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WBbt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WBBT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WB-BT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; 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+ bioregistry.schema:hasMetaidentifier "WBPhenotype" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WBPhenotype" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WBPhenotype" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WB-PHENOTYPE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wbphenotype" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPHENOTYPE_$1" . + +bioregistry.resource:wgs84 a bioregistry.schema:resource ; 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It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Q2207226" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WD_Entity" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WIKIDATA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wikidata" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wikidata" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^(Q|P)\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/wikidata:$1" . + +bioregistry.resource:wikidata.property a bioregistry.schema:resource ; + rdfs:label "Wikidata Property" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P4355" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WD_Prop" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WIKIDATA_PROPERTY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] . + +bioregistry.resource:wikigenes a bioregistry.schema:resource ; + rdfs:label "WikiGenes" ; + rdfs:comment "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "3771877" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WIKIGENES" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wikigenes" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wikigenes" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/wikigenes:$1" . + +bioregistry.resource:wikipathways a bioregistry.schema:resource ; + rdfs:label "WikiPathways" ; + rdfs:comment """WikiPathways is a resource providing an open and public collection of pathway maps created and curated by the community in a Wiki like style.\r +All content is under the Creative Commons Attribution 3.0 Unported license.""" ; + foaf:homepage "http://www.wikipathways.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "WP732" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WIKIPATHWAYS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2410" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wikipathways" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WIKIPATHWAYS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wikipathways" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "WP\\d{1,5}(\\_r\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/wikipathways:$1" . + +bioregistry.resource:wikipedia.en a bioregistry.schema:resource ; + rdfs:label "Wikipedia" ; + rdfs:comment "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay." ; + foaf:homepage "http://en.wikipedia.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SM_UB-81" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WIKIPEDIA.EN" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wikipedia.en" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wikipedia.en" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Wikipedia" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ] ; + bioregistry.schema:pattern "^[A-Za-z-0-9_]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/wikipedia.en:$1" . + +bioregistry.resource:worfdb a bioregistry.schema:resource ; + rdfs:label "C. elegans ORFeome cloning project" ; + rdfs:comment "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends)." ; + foaf:homepage "http://worfdb.dfci.harvard.edu/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "T01B6.1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "worfdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "worfdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WorfDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WORFDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+(\\.\\d+)?" ; + bioregistry.schema:provider_formatter "https://identifiers.org/worfdb:$1" . + +bioregistry.resource:wormbase a bioregistry.schema:resource ; + rdfs:label "WormBase" ; + rdfs:comment "None" ; + foaf:homepage "https://wormbase.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C05G5/12462-12364" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WB_REF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WormBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WormBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P3860" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WormBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] . + +bioregistry.resource:wormpep a bioregistry.schema:resource ; + rdfs:label "Wormpep" ; + rdfs:comment "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CE28239" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wormpep" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WORMPEP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "wormpep" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^CE\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/wormpep:$1" . + +bioregistry.resource:worms a bioregistry.schema:resource ; + rdfs:label "World Register of Marine Species" ; + rdfs:comment "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "146421" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "worms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "worms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "WORMS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/worms:$1" . + +bioregistry.resource:xao a bioregistry.schema:resource ; + rdfs:label "Xenopus Anatomy Ontology" ; + rdfs:comment "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis." ; + foaf:homepage "http://www.xenbase.org/anatomy/xao.do?method=display" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "esegerd3@gmail.com" ; + bioregistry.schema:example "0004486" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "XAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "XAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P4495" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "xao" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "XAO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/xao/terms?iri=http://purl.obolibrary.org/obo/XAO_$1" . + +bioregistry.resource:xco a bioregistry.schema:resource ; + rdfs:label "Experimental condition ontology" ; + rdfs:comment "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms." ; + foaf:homepage "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "jrsmith@mcw.edu" ; + bioregistry.schema:example "0000780" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "XCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "xco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "XCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "XCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/xco/terms?iri=http://purl.obolibrary.org/obo/XCO_$1" . + +bioregistry.resource:xenbase a bioregistry.schema:resource ; + rdfs:label "Xenbase" ; + rdfs:comment "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions." ; + foaf:homepage "http://www.xenbase.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "XB-GENE-922462" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "xenbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Xenbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "xenbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "Xenbase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; 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The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "YAL001C" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "YDPM" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ydpm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ydpm" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^Y[A-Z]{2}\\d+[CW]$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ydpm:$1" . + +bioregistry.resource:yeastintron a bioregistry.schema:resource ; + rdfs:label "Yeast Intron Database v4.3" ; + rdfs:comment "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SNR17A" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "YEASTINTRON" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "yeastintron" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "yeastintron" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/yeastintron:$1" . + +bioregistry.resource:yetfasco a bioregistry.schema:resource ; + rdfs:label "YeTFasCo" ; + rdfs:comment "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "YOR172W_571.0" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "yetfasco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "yetfasco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "YETFASCO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\w+\\_\\d+(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/yetfasco:$1" . + +bioregistry.resource:yid a bioregistry.schema:resource ; + rdfs:label "Yeast Intron Database v3" ; + rdfs:comment "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SNR17A" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "yid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "yid" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "YID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Z0-9]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/yid:$1" . + +bioregistry.resource:ymdb a bioregistry.schema:resource ; + rdfs:label "Yeast Metabolome Database" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "YMDB00001" ; + bioregistry.schema:pattern "^YMDB\\d+$" ; + bioregistry.schema:provider_formatter "http://www.ymdb.ca/compounds/$1" . + +bioregistry.resource:yrcpdr a bioregistry.schema:resource ; + rdfs:label "YRC PDR" ; + rdfs:comment "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2673500" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "yrcpdr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "yrcpdr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "YRCPDR" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/yrcpdr:$1" . + +bioregistry.resource:zea a bioregistry.schema:resource ; + rdfs:label "Maize gross anatomy" ; + rdfs:comment "None" ; + foaf:homepage "http://www.maizemap.org/" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:email "Leszek@missouri.edu" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZEA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZEA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZEA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:zeco a bioregistry.schema:resource ; + rdfs:label "Zebrafish Experimental Conditions Ontology" ; + rdfs:comment "None" ; + foaf:homepage "https://github.com/ybradford/zebrafish-experimental-conditions-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "ybradford@zfin.org" ; + bioregistry.schema:example "0000171" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "zeco" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZECO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/zeco/terms?iri=http://purl.obolibrary.org/obo/ZECO_$1" . + +bioregistry.resource:zfa a bioregistry.schema:resource ; + rdfs:label "Zebrafish anatomy and development ontology" ; + rdfs:comment "A structured controlled vocabulary of the anatomy and development of the Zebrafish" ; + foaf:homepage "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "van_slyke@zfin.org" ; + bioregistry.schema:example "0005926" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZFA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZFA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZFA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "zfa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ] ; + bioregistry.schema:pattern "^\\d{7}$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_$1" . + +bioregistry.resource:zfin a bioregistry.schema:resource ; + rdfs:label "Zebrafish Information Network" ; + rdfs:comment "ZFIN serves as the zebrafish model organism database. 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The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ZINC1084" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "zinc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZINC" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "zinc" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P2084" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ] ; + bioregistry.schema:pattern "^(ZINC)?\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/zinc:$1" . + +bioregistry.resource:zp a bioregistry.schema:resource ; + rdfs:label "Zebrafish Phenotype Ontology" ; + rdfs:comment "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism." ; + foaf:homepage "https://github.com/obophenotype/zebrafish-phenotype-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:email "ybradford@zfin.org" ; + bioregistry.schema:example "0019030" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "zp" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:obofoundry ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ZP" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/zp/terms?iri=http://purl.obolibrary.org/obo/ZP_$1" . + +bioregistry.resource:ac a bioregistry.schema:resource ; + rdfs:label "Activity Streams" ; + rdfs:comment "None" ; + foaf:homepage "http://www.w3.org/ns/activitystreams" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:provider_formatter "http://www.w3.org/ns/activitystreams#$1" . + +bioregistry.resource:biostudies a bioregistry.schema:resource ; + rdfs:label "BioStudies database" ; + rdfs:comment "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "S-EPMC6266652" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biostudies" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biodbcore-000989" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biostudies" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^S-[A-Z]{4}[A-Z\\d\\-]+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/biostudies:$1" . + +bioregistry.resource:bmrb a bioregistry.schema:resource ; + rdfs:label "Biological Magnetic Resonance Data Bank" ; + rdfs:comment "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "15000" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.p06nme" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "bmrb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "BMRB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^(bmr|bmse|bmst)?[0-9]{1,6}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/bmrb:$1" . + +bioregistry.resource:cellimage a bioregistry.schema:resource ; + rdfs:label "Cell Image Library" ; + rdfs:comment "The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "24801" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cellimage" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.8t18te" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "CELLIMAGE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "cellimage" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/cellimage:$1" . + +bioregistry.resource:dcat a bioregistry.schema:resource ; + rdfs:label "Data Catalog" ; + rdfs:comment "None" ; + foaf:homepage "https://www.w3.org/ns/dcat" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Dataset" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dcat" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dcat" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DCAT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "http://www.w3.org/ns/dcat#$1" . + +bioregistry.resource:dcterms a bioregistry.schema:resource ; + rdfs:label "Dublin Core Metadata Vocabulary" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "title" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DCTERMS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dct" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dcterms" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "https://dublincore.org/specifications/dublin-core/dcmi-terms/#$1" . + +bioregistry.resource:dctypes a bioregistry.schema:resource ; + rdfs:label "Dublin Core Types" ; + rdfs:comment "None" ; + foaf:homepage "https://dublincore.org/specifications/dublin-core/dcmi-terms/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Collection" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dctypes" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "http://purl.org/dc/dcmitype/$1" . + +bioregistry.resource:ega.dataset a bioregistry.schema:resource ; + rdfs:label "European Genome-phenome Archive Dataset" ; + rdfs:comment "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'." ; + foaf:homepage "https://ega-archive.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EGAD00000000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ega.dataset" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ega.dataset" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.mya1ff" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EGA.DATASET" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^EGAD\\d{11}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ega.dataset:$1" . + +bioregistry.resource:ega.study a bioregistry.schema:resource ; + rdfs:label "European Genome-phenome Archive Study" ; + rdfs:comment "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EGAS00000000001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ega.study" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EGA.STUDY" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ega.study" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^EGAS\\d{11}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ega.study:$1" . + +bioregistry.resource:emdb a bioregistry.schema:resource ; + rdfs:label "Electron Microscopy Data Bank" ; + rdfs:comment "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "EMD-1001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "emdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.651n9j" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "emdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "EMDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^EMD-\\d{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/emdb:$1" . + +bioregistry.resource:empiar a bioregistry.schema:resource ; + rdfs:label "Electron Microscopy Public Image Archive" ; + rdfs:comment "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure" ; + foaf:homepage "https://www.ebi.ac.uk/pdbe/emdb" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "10595" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "biodbcore-001140" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ] ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1" . + +bioregistry.resource:faldo a bioregistry.schema:resource ; + rdfs:label "Feature Annotation Location Description Ontology " ; + rdfs:comment "None" ; + foaf:homepage "http://biohackathon.org/resource/faldo" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "ForwardStrandPosition" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "faldo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FALDO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "http://biohackathon.org/resource/faldo#$1" . + +bioregistry.resource:foaf a bioregistry.schema:resource ; + rdfs:label "Friend of a Friend" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "foaf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "foaf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FOAF" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "http://xmlns.com/foaf/0.1/$1" . + +bioregistry.resource:genbank a bioregistry.schema:resource ; + rdfs:label "GenBank" ; + rdfs:comment "None" ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/genbank/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "U49845" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GenBank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.9kahy4" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GenBank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GenBank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:provider_formatter "https://www.ncbi.nlm.nih.gov/nucleotide/$1" . + +bioregistry.resource:geo a bioregistry.schema:resource ; + rdfs:label "NCBI Gene Expression Omnibus" ; + rdfs:comment "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval." ; + foaf:homepage "http://www.ncbi.nlm.nih.gov/geo/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "GDS1234" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GEO" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "geo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "geo" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.5hc8vt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ] ; + bioregistry.schema:pattern "^G(PL|SM|SE|DS)\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/geo:$1" . + +bioregistry.resource:hgnc.symbol a bioregistry.schema:resource ; + rdfs:label "HGNC Symbol" ; + rdfs:comment "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DAPK1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgnc.symbol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "hgnc.symbol" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "HGNC.SYMBOL" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^[A-Za-z-0-9_]+(\\@)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/hgnc.symbol:$1" . + +bioregistry.resource:idot a bioregistry.schema:resource ; + rdfs:label "Identifiers.org Terms" ; + rdfs:comment "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets." ; + foaf:homepage "http://biomodels.net/vocab/idot.rdf" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "identifierPattern" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "idot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "IDOT" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "idot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[A-Za-z]+$" ; + bioregistry.schema:provider_formatter "https://biomodels.net/vocab/idot.rdf#$1" . + +bioregistry.resource:idr a bioregistry.schema:resource ; + rdfs:label "Image Data Resource" ; + rdfs:comment "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "0001" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "idr" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.6wf1zw" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ] ; + bioregistry.schema:pattern "^[0-9]{4}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/idr:$1" . + +bioregistry.resource:insdc.sra a bioregistry.schema:resource ; + rdfs:label "Sequence Read Archive" ; + rdfs:comment "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "SRX000007" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "insdc.sra" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.g7t2hv" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "INSDC.SRA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "insdc.sra" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^[SED]R[APRSXZ]\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/insdc.sra:$1" . + +bioregistry.resource:massive a bioregistry.schema:resource ; + rdfs:label "MassIVE" ; + rdfs:comment "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "MSV000082131" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MASSIVE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.LYsiMd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "massive" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "massive" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MassIVE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^MSV\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/massive:$1" . + +bioregistry.resource:ncbigene a bioregistry.schema:resource ; + rdfs:label "NCBI Gene" ; + rdfs:comment "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis." ; + foaf:homepage "http://www.ncbi.nlm.nih.gov/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "100010" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncbigene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P351" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "GeneID" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCBIGene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "ncbigene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "NCBIGene" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/ncbigene:$1" . + +bioregistry.resource:oa a bioregistry.schema:resource ; + rdfs:label "Web Annotation Ontology" ; + rdfs:comment "None" ; + foaf:homepage "http://www.w3.org/ns/oa" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oa" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "OA" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:provider_formatter "http://www.w3.org/ns/oa#$1" . + +bioregistry.resource:oboinowl a bioregistry.schema:resource ; + rdfs:label "OBO in OWL" ; + rdfs:comment "None" ; + foaf:homepage "https://github.com/geneontology/go-ontology/tree/master/contrib" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:download "https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.obo" ; + bioregistry.schema:example "DbXref" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "oboInOwl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "http://www.geneontology.org/formats/oboInOwl#$1" . + +bioregistry.resource:owl a bioregistry.schema:resource ; + rdfs:label "OWL Ontology" ; + rdfs:comment "None" ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "owl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "http://www.w3.org/2002/07/owl#$1" . + +bioregistry.resource:panorama a bioregistry.schema:resource ; + rdfs:label "Panorama Public" ; + rdfs:comment "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible." ; + foaf:homepage "https://panoramaweb.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "FxnI151FMs" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.uBpQ1q" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ] ; + bioregistry.schema:provider_formatter "https://panoramaweb.org/$1.url" . + +bioregistry.resource:peptideatlas.dataset a bioregistry.schema:resource ; + rdfs:label "PeptideAtlas Dataset" ; + rdfs:comment "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "PASS01237" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "peptideatlas.dataset" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "peptideatlas.dataset" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^PASS\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/peptideatlas.dataset:$1" . + +bioregistry.resource:pride a bioregistry.schema:resource ; + rdfs:label "PRIDE Controlled Vocabulary" ; + rdfs:comment "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays." ; + foaf:homepage "https://github.com/PRIDE-Utilities/pride-ontology" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pride" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pride" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PRIDE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.e1byny" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PRIDE" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pride" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pride:$1" . + +bioregistry.resource:prov a bioregistry.schema:resource ; + rdfs:label "PROV Namespace" ; + rdfs:comment "None" ; + foaf:homepage "https://www.w3.org/ns/prov" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "Activity" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prov" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prov" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ols ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "prov" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:biolink ] ; + bioregistry.schema:provider_formatter "https://www.w3.org/ns/prov#$1" . + +bioregistry.resource:rdf a bioregistry.schema:resource ; + rdfs:label "Resource Description Framework" ; + rdfs:comment "None" ; + foaf:homepage "http://www.w3.org/1999/02/22-rdf-syntax-ns" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "RDF" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rdf" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1" . + +bioregistry.resource:rdfs a bioregistry.schema:resource ; + rdfs:label "RDF Schema" ; + rdfs:comment "None" ; + foaf:homepage "https://www.w3.org/TR/rdf-schema/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "label" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "RDFS" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "rdfs" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "http://www.w3.org/2000/01/rdf-schema#$1" . + +bioregistry.resource:ssbd.dataset a bioregistry.schema:resource ; + rdfs:label "System Science of Biological Dynamics dataset" ; + rdfs:comment "None" ; + foaf:homepage "https://ssbd.riken.jp" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.we2r5a" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ] ; + bioregistry.schema:provider_formatter "https://ssbd.riken.jp/database/dataset/$1" . + +bioregistry.resource:ssbd.project a bioregistry.schema:resource ; + rdfs:label "System Science of Biological Dynamics project" ; + rdfs:comment "None" ; + foaf:homepage "https://ssbd.riken.jp" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "1" ; + bioregistry.schema:provider_formatter "https://ssbd.riken.jp/database/project/$1" . + +bioregistry.resource:uniprot a bioregistry.schema:resource ; + rdfs:label "Universal Protein Knowledgebase" ; + rdfs:comment "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information." ; + foaf:homepage "http://www.uniprot.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "P0DP23" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UniProtKB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UniProtKB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P352" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "UniProt" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uniprot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "uniprot" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/uniprot:$1" . + +bioregistry.resource:void a bioregistry.schema:resource ; + rdfs:label "Vocabulary of Interlinked Datasets" ; + rdfs:comment "None" ; + foaf:homepage "http://vocab.deri.ie/void" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "feature" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "void" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "http://rdfs.org/ns/void#$1" . + +bioregistry.resource:xsd a bioregistry.schema:resource ; + rdfs:label "XML Schema Definition" ; + rdfs:comment "None" ; + foaf:homepage "http://www.w3.org/2001/XMLSchema" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "xsd" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] ; + bioregistry.schema:provider_formatter "http://www.w3.org/2001/XMLSchema#$1" . + +bioregistry.resource:chembl a bioregistry.schema:resource ; + rdfs:label "ChEMBL" ; + rdfs:comment "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature." ; + foaf:homepage "None" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "CHEMBL4303805" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "chembl" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ] ; + bioregistry.schema:pattern "^CHEMBL\\d+$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/chembl:$1" . + +bioregistry.resource:dictybase a bioregistry.schema:resource ; + rdfs:label "dictyBase" ; + rdfs:comment "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics" ; + foaf:homepage "http://dictybase.org" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DDB0191090" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dictyBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dictyBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dictyBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "dictyBase" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ] . + +bioregistry.resource:drugbank a bioregistry.schema:resource ; + rdfs:label "DrugBank" ; + rdfs:comment "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information." ; + foaf:homepage "http://www.drugbank.ca" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "DB14938" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DrugBank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P715" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "drugbank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "DrugBank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "drugbank" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ] ; + bioregistry.schema:pattern "^DB\\d{5}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/drugbank:$1" . + +bioregistry.resource:mesh a bioregistry.schema:resource ; + rdfs:label "Medical Subject Headings" ; + rdfs:comment "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc." ; + foaf:homepage "https://www.wikidata.org/wiki/Q6589563" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "C063233" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MeSH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mesh" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "mesh" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MESH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P486" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "MESH" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:bioportal ] ; + bioregistry.schema:pattern "^(C|D)\\d{6,9}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/mesh:$1" . + +bioregistry.resource:pdb a bioregistry.schema:resource ; + rdfs:label "Protein Data Bank" ; + rdfs:comment "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules." ; + foaf:homepage "https://www.rcsb.org/" ; + bioregistry.schema:deprecated false ; + bioregistry.schema:example "2gc4" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "P638" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:wikidata ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "pdb" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "FAIRsharing.2t35ja" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:fairsharing ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "PDB" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:ncbi ] ; + bioregistry.schema:pattern "^[0-9][A-Za-z0-9]{3}$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/pdb:$1" . + + rdfs:label "Charles Tapley Hoyt" . + +bioregistry.resource:kegg a bioregistry.schema:resource ; + rdfs:label "Kyoto Encyclopedia of Genes and Genomes" ; + rdfs:comment "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies." ; + foaf:homepage "http://www.genome.ad.jp/kegg/" ; + bioregistry.schema:deprecated true ; + bioregistry.schema:example "hsa00190" ; + bioregistry.schema:hasMapping [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:go ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:n2t ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "kegg" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:miriam ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:prefixcommons ], + [ a bioregistry.schema:mapping ; + bioregistry.schema:hasMetaidentifier "KEGG" ; + bioregistry.schema:hasMetaresource bioregistry.metaresource:uniprot.database ] ; + bioregistry.schema:pattern "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$" ; + bioregistry.schema:provider_formatter "https://identifiers.org/kegg:$1" . + +bioregistry.metaresource:fairsharing a bioregistry.schema:metaresource ; + rdfs:label "FAIRSharing" ; + rdfs:comment "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies." ; + foaf:homepage "https://fairsharing.org/" ; + bioregistry.schema:example "FAIRsharing.62qk8w" ; + bioregistry.schema:isProvider true ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false ; + bioregistry.schema:provider_formatter "https://fairsharing.org/$1" . + +bioregistry.metaresource:biolink a bioregistry.schema:metaresource ; + rdfs:label "Biolink Model Registry" ; + rdfs:comment "A modeling paradigm-specific registry of prefixes and their URL expansions" ; + foaf:homepage "https://raw.githubusercontent.com/biolink/biolink-model" ; + bioregistry.schema:example "doi" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false . + +bioregistry.metaresource:ncbi a bioregistry.schema:metaresource ; + rdfs:label "National Center for Biotechnology Information Registry" ; + rdfs:comment "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources" ; + foaf:homepage "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" ; + bioregistry.schema:example "ECOCYC" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false . + +bioregistry.metaresource:uniprot.database a bioregistry.schema:metaresource ; + rdfs:label "UniProt Cross-ref database" ; + rdfs:comment "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources." ; + foaf:homepage "https://www.uniprot.org/database/" ; + bioregistry.schema:example "0174" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false . + +bioregistry.metaresource:wikidata a bioregistry.schema:metaresource ; + rdfs:label "Wikidata Property" ; + rdfs:comment "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." ; + foaf:homepage "https://www.wikidata.org" ; + bioregistry.schema:example "P683" ; + bioregistry.schema:isProvider true ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false ; + bioregistry.schema:provider_formatter "https://www.wikidata.org/wiki/Property:$1" . + +bioregistry.metaresource:go a bioregistry.schema:metaresource ; + rdfs:label "Gene Ontology Registry" ; + rdfs:comment "A database-specific registry supporting curation in the Gene Ontology" ; + foaf:homepage "http://geneontology.org/" ; + bioregistry.schema:example "CHEBI" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false . + +bioregistry.metaresource:obofoundry a bioregistry.schema:metaresource ; + rdfs:label "OBO Foundry" ; + rdfs:comment "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate." ; + foaf:homepage "http://www.obofoundry.org/" ; + bioregistry.schema:example "chebi" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false . + +bioregistry.metaresource:ols a bioregistry.schema:metaresource ; + rdfs:label "Ontology Lookup Service" ; + rdfs:comment "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. " ; + foaf:homepage "https://www.ebi.ac.uk/ols" ; + bioregistry.schema:example "chebi" ; + bioregistry.schema:isProvider true ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false ; + bioregistry.schema:provider_formatter "https://www.ebi.ac.uk/ols/ontologies/$1" . + +bioregistry.metaresource:bioportal a bioregistry.schema:metaresource ; + rdfs:label "BioPortal Prefixes" ; + rdfs:comment "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry" ; + foaf:homepage "https://bioportal.bioontology.org/" ; + bioregistry.schema:example "CHEBI" ; + bioregistry.schema:isProvider true ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false ; + bioregistry.schema:provider_formatter "https://bioportal.bioontology.org/ontologies/$1" . + +bioregistry.metaresource:n2t a bioregistry.schema:metaresource ; + rdfs:label "Name-to-Thing" ; + rdfs:comment "An ARK resolver as well as resolver built with common prefxies as in Identifiers.org" ; + foaf:homepage "https://n2t.net" ; + bioregistry.schema:example "chebi" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver true ; + bioregistry.schema:resolver_formatter "https://n2t.net/$1:$2" . + +bioregistry.metaresource:miriam a bioregistry.schema:metaresource ; + rdfs:label "Identifiers.org" ; + rdfs:comment "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession)." ; + foaf:homepage "https://identifiers.org" ; + bioregistry.schema:example "chebi" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver true ; + bioregistry.schema:resolver_formatter "https://identifiers.org/$1:$2" . + +bioregistry.metaresource:prefixcommons a bioregistry.schema:metaresource ; + rdfs:label "Prefix Commons" ; + rdfs:comment "A registry of commonly used prefixes in the life sciences and linked data" ; + foaf:homepage "https://prefixcommons.org" ; + bioregistry.schema:example "CHEBI" ; + bioregistry.schema:isProvider false ; + bioregistry.schema:isRegistry true ; + bioregistry.schema:isResolver false . + diff --git a/docs/_data/bioregistry.xml b/docs/_data/bioregistry.xml new file mode 100644 index 000000000..8e79fb7aa --- /dev/null +++ b/docs/_data/bioregistry.xml @@ -0,0 +1,31759 @@ + + + + false + None + + ^rxn\d+$ + https://identifiers.org/seed.reaction:$1 + ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions. + SEED Reactions + + rxn00001 + + + + + KEGG.METAGENOME + + + + + OHD + + + + https://wormbase.org + WormBase + + None + false + + + C05G5/12462-12364 + + + + + + chmo + + + + + + + P2064 + + + + lincs.cell + + + + ^NONHSAG\d{5}$ + NONCODE v4 Gene + + + false + + None + + https://identifiers.org/noncodev4.gene:$1 + NONHSAG00001 + NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions. + + + + https://github.com/infectious-disease-ontology-extensions/ido-covid-19 + false + + https://www.ebi.ac.uk/ols/ontologies/idocovid19/terms?iri=http://purl.obolibrary.org/obo/IDOCOVID19_$1 + The COVID-19 Infectious Disease Ontology + The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease. + johnbeverley2021@u.northwestern.edu + + + + dandi + + + + + + + DPO + + + + None + + ^\d{4}$ + 1455 + false + https://identifiers.org/metlin:$1 + + The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry. + Metabolite and Tandem Mass Spectrometry Database + + + + None + MEROPS Inhibitor + + https://identifiers.org/merops.inhibitor:$1 + + false + The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors. + I31.952 + ^I\d{2}\.\d{3}$ + + + + + + + gomodel + + + false + + http://www.w3.org/2001/XMLSchema#$1 + + None + http://www.w3.org/2001/XMLSchema + XML Schema Definition + + + Protein Data Bank Ligand + The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands. + + https://identifiers.org/pdb.ligand:$1 + + false + ^[A-Za-z0-9]+$ + + + TRQ + + None + + + https://pubchem.ncbi.nlm.nih.gov + + + https://identifiers.org/pubchem.bioassay:$1 + + + PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results. + 1018 + false + + ^\d+$ + NCBI PubChem database of bioassay records + + + + + biominder + + + false + + American Type Culture Collection + https://identifiers.org/atcc:$1 + + https://www.lgcstandards-atcc.org + + 11303 + ^\d+$ + + + The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences. + + + + + MeSH 2013 + MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013. + https://identifiers.org/mesh.2013:$1 + 17165 + false + None + ^[A-Za-z0-9]+$ + + + + + + + false + None + ArrayExpress Platform + + + https://identifiers.org/arrayexpress.platform:$1 + ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results. + ^[AEP]-\w{4}-\d+$ + A-GEOD-50 + + + false + ^NOR\d+$ + None + + + Nonribosomal Peptides Database + Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings. + NOR00681 + + + https://identifiers.org/norine:$1 + + + + https://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_$1 + ^\d{7}$ + + + A collection of biological attributes (traits) covering all kingdoms of life. + 0000001 + + Ontology of Biological Attributes + cjmungall@lbl.gov + + false + https://github.com/obophenotype/bio-attribute-ontology + + + + + + https://github.com/information-artifact-ontology/IAO/ + false + + + Information Artifact Ontology + jiezheng@pennmedicine.upenn.edu + An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch. + 0000030 + https://identifiers.org/iao:$1 + + + ^\d{7}$ + + + + ascl + + + + + foodon + + + + + Each OCI (Open Citation Identifier) has a simple structure: oci:number-number, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entitiy - see https://opencitations.wordpress.com/2018/02/19/citations-as-first-class-data-entities-introduction/ for additional information. + +OCIs for citations stored within the OpenCitations Corpus are constructed by combining the OpenCitations Corpus local identifiers for the citing and cited bibliographic resources, separating them with a dash. For example, oci:2544384-7295288 is a valid OCI for the citation between two papers stored within the OpenCitations Corpus. + +OCIs can also be created for bibliographic resources described in an external bibliographic database, if they are similarly identified there by identifiers having a unique numerical part. For example, the OCI for the citation that exists between Wikidata resources Q27931310 and Q22252312 is oci:01027931310–01022252312. + +OCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings. + None + + https://identifiers.org/oci:$1 + false + Open Citation Identifier + + + ^[0-9]+-[0-9]+$ + + 1-18 + + + Vertebrate trait ontology + ^\d{7}$ + + false + caripark@iastate.edu + + An ontology of traits covering vertebrates + https://github.com/AnimalGenome/vertebrate-trait-ontology + https://www.ebi.ac.uk/ols/ontologies/vt/terms?iri=http://purl.obolibrary.org/obo/VT_$1 + + + 0000685 + + + + CATH.SUPERFAMILY + + + + + + USPTO + + + + ^\d+$ + None + E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules. + + 56 + + https://identifiers.org/ecyano.rule:$1 + false + + + + E-cyanobacterium rule + + + The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use. + None + + + https://identifiers.org/atcvet:$1 + Anatomical Therapeutic Chemical Vetinary + QJ51RV02 + + ^Q[A-Z0-9]+$ + false + + + + + + GMD.PROFILE + + + + RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. + + ^LOC\_Os\d{1,2}g\d{5}$ + + RiceNetDB Protein + false + + LOC_Os01g49190 + https://identifiers.org/ricenetdb.protein:$1 + None + + + None + + KNApSAcK + KNApSAcK provides information on metabolites and the +taxonomic class with which they are associated. + + + + false + ^C\d{8} + https://identifiers.org/knapsack:$1 + + C00000001 + + + https://identifiers.org/nemo:$1 + + [a-z]{3}-[a-km-z0-9]{7} + false + This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects. + + + smp-m3w9hbe + Neural ElectroMagnetic Ontology + None + + + + MycoBrowser smegmatis + None + + MSMEG_3769 + false + https://identifiers.org/myco.smeg:$1 + Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information. + + + ^MSMEG\w+$ + + + + + ^SM\d{5}$ + http://smart.embl-heidelberg.de/ + + https://identifiers.org/smart:$1 + SM00015 + Simple Modular Architecture Research Tool + The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures. + false + + + + + + + + gno + + + + + The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol. + https://identifiers.org/hgnc.symbol:$1 + None + ^[A-Za-z-0-9_]+(\@)?$ + DAPK1 + HGNC Symbol + + + false + + + ybradford@zfin.org + The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism. + ^\d+$ + + Zebrafish Phenotype Ontology + false + + https://github.com/obophenotype/zebrafish-phenotype-ontology + + + https://www.ebi.ac.uk/ols/ontologies/zp/terms?iri=http://purl.obolibrary.org/obo/ZP_$1 + 0019030 + + + + + GPIb_IX_V + + + https://sorgerlab.github.io/famplex/$1 + false + https://sorgerlab.github.io/famplex/ + ^[a-zA-Z0-9][A-Za-z0-9_]+$ + + + FamPlex + FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships. + + + nasc + + + + + + + ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities. + false + https://orcid.org/ + + + ^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$ + https://identifiers.org/orcid:$1 + + 0000-0002-5355-2576 + + Open Researcher and Contributor ID + + + + + HCPCS + + + + false + KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways. + None + KEGG Glycan + G00123 + https://identifiers.org/kegg.glycan:$1 + + ^G\d+$ + + + + + + RNA Modification Database + 101 + ^\d{3}$ + + https://mods.rna.albany.edu/ + + + + The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA. + https://identifiers.org/rnamods:$1 + + false + + + + + ENSEMBL.FUNGI + + + + SRX000007 + + https://identifiers.org/insdc.sra:$1 + ^[SED]R[APRSXZ]\d+$ + The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database. + Sequence Read Archive + + None + + + false + + + Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date. + https://identifiers.org/google.patent:$1 + US4145692 + + false + + + + ^[A-Z]{2}\d+([A-Z])?$ + Google Patents + None + + + dcterms + + + + + https://identifiers.org/subtilist:$1 + + false + http://genolist.pasteur.fr/SubtiList/ + + + SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria. +SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments. + + Bacillus subtilis genome sequencing project + ^BG\d+$ + + BG11523 + + + + true + None + PSI Extended File Format + https://www.psidev.info/peff + https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo + 0001011 + + + nbrc + + + + + https://identifiers.org/zinc:$1 + ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number. + ZINC is not Commercial + + + ZINC1084 + + false + + ^(ZINC)?\d+$ + + None + + + + The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO). + false + + + + https://github.com/obi-ontology/obi/raw/master/views/obi.obo + + http://obi-ontology.org + Ontology for Biomedical Investigations + + ^\d{7}$ + bpeters@lji.org + 0400109 + http://purl.obolibrary.org/obo/OBI_$1 + + + + + + 2019-08-03_00000089_1 + false + None + + The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB. + + ^[0-9\-_]+$ + Continuous Automated Model Evaluation + + https://identifiers.org/cameo:$1 + + + The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies. + false + + + + https://identifiers.org/PR:$1 + + + + dan5@georgetown.edu + + ^PR:P?\d+$ + + PRotein Ontology (PRO) + 000000024 + + http://proconsortium.org + + + + DBG2 Introns + + false + None + + The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank. + + https://identifiers.org/dbg2introns:$1 + Cu.me.I1 + ^\w{1,2}\.(\w{1,2}\.)?[A-Za-z0-9]+$ + + + + false + + None + MIR:00100005 + https://identifiers.org/miriam.resource:$1 + + ^MIR:001\d{5}$ + MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases. + + MIRIAM Registry resource + + + + + https://identifiers.org/arrayexpress:$1 + false + ^[AEP]-\w{4}-\d+$ + None + ArrayExpress + + + ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations. + + E-MEXP-1712 + + + + + P662 + + + ^P\w+$ + + PSEEN0001 + + None + + The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation. + false + Pseudomonas Genome Database + + https://identifiers.org/pseudomonas:$1 + + + + + PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species. + https://identifiers.org/paxdb.organism:$1 + None + + ^\d+$ + PaxDb Organism + 9606 + + false + + + + pw + + + + + + aceview.worm + + + + + PTN000000026 + false + https://identifiers.org/panther.node:$1 + + The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes. + ^PTN\d{9}$ + None + PANTHER Node + + + + + + OPMI + + + adw + + + + + false + + + BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories. + + BioProject + + https://identifiers.org/bioproject:$1 + None + ^PRJ[DEN][A-Z]\d+$ + PRJDB3 + + + None + ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$ + + + + Q5BJF6-3 + UniProt Isoform + + https://identifiers.org/uniprot.isoform:$1 + The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information. + false + + + + degradome + + + + + multicellds.cell_line + + + + 3hB06 + + DragonDB DNA + None + false + + + DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information. + + https://identifiers.org/dragondb.dna:$1 + ^\d\w+$ + + + + GENPROP + + + + + helpdesk@cropontology-curationtool.org + + false + + This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017. + Beet Ontology ontology + http://www.cropontology.org/ontology/CO_333/Beet%20Ontology + https://www.ebi.ac.uk/ols/ontologies/co_333/terms?iri=http://purl.obolibrary.org/obo/CO_333_$1 + + + GREENGENES + + + + + + + P2410 + + + + + http://flybase.org/ + + + + FlyBase + + + FBgn0011293 + https://identifiers.org/fb:$1 + false + ^FB\w{2}\d{7}$ + FlyBase is the database of the Drosophila Genome Projects and of associated literature. + + + + + DRSC + + + rfam + + + + + false + NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases. + + + ^oai\:cwi\.nl\:\d+$ + National Academic Research and Collaborations Information System + https://identifiers.org/narcis:$1 + + + oai:cwi.nl:4725 + http://www.narcis.nl + + + trans + + + + + ONS + + + + + + + https://identifiers.org/pharmgkb.gene:$1 + + The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. + PA131 + + ^PA\w+$ + https://www.pharmgkb.org + Pharmacogenetics and Pharmacogenomics Knowledge Base + + + + false + + + https://github.com/cyang0128/Nutritional-epidemiologic-ontologies + chen.yang@ugent.be + Ontology for Nutritional Epidemiology + + + https://www.ebi.ac.uk/ols/ontologies/one/terms?iri=http://purl.obolibrary.org/obo/ONE_$1 + An ontology to standardize research output of nutritional epidemiologic studies. + false + + + + + + MO + + + + + 0000630 + + + https://www.ebi.ac.uk/ols/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_$1 + jaiswalp@science.oregonstate.edu + + Plant Trait Ontology + false + + http://browser.planteome.org/amigo + A controlled vocabulary of describe phenotypic traits in plants. + ^\d{7}$ + + + + + false + + + + ftp://ftp.rgd.mcw.edu/pub/data_release/ontology_obo_files/pathway/pathway.obo + The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions. + + + + 0000423 + http://rgd.mcw.edu/rgdweb/ontology/search.html + https://identifiers.org/PW:$1 + Pathway ontology + gthayman@mcw.edu + ^PW:\d{7}$ + + + 26957 + + https://identifiers.org/clinvar.submitter:$1 + ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs). + ClinVar Submitter + false + + ^\d+$ + None + + + + mi + + + + https://identifiers.org/fbol:$1 + DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms. + 2224 + false + + + International Fungal Working Group Fungal Barcoding. + + + + ^\d+$ + http://www.fungalbarcoding.org/ + + + false + + None + Terminology for Description of Dynamics + + + The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology. + + TEDDY_0000066 + https://identifiers.org/biomodels.teddy:$1 + + + ^TEDDY_\d{7}$ + + + + rhea + + + + The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data. + + stoeckrt@pcbi.upenn.edu + + Microarray experimental conditions + ArrayGroup + https://identifiers.org/mo:$1 + true + + + + + http://mged.sourceforge.net/ontologies/MGEDontology.php + ^\w+$ + + + MOL000160 + None + The Bioinorganic Motif Database + None + https://www.flymine.org/come/entry?gn=$1 + false + + + + + comptox + + + + https://identifiers.org/genpept:$1 + + The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank. + + + + GenPept + false + None + CAA71118.1 + ^\w{3}\d{5}(\.\d+)?$ + + + false + None + 28 + + ^[0-9]+$ + The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs). + + + https://identifiers.org/napdi:$1 + + Natural Product-Drug Interaction Research Data Repository + + + hao + + + + + PXD000500 + false + None + ^(R)?PXD\d{6}$ + + + + + ProteomeXchange + The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination. + https://identifiers.org/px:$1 + + + ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl + + None + GO Relations + false + None + + + + + ChemIDplus + false + None + + + ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest. + 57-27-2 + ^\d+\-\d+\-\d+$ + + https://identifiers.org/chemidplus:$1 + + + + + AURKA + PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information. + None + PhosphoPoint Kinase + https://identifiers.org/phosphopoint.kinase:$1 + + + false + ^\w+$ + + + + An ontology covering the taxonomy of teleosts (bony fish) + + Teleost taxonomy ontology + + + + + ^\d+$ + 1058367 + balhoff@renci.org + false + https://www.ebi.ac.uk/ols/ontologies/tto/terms?iri=http://purl.obolibrary.org/obo/TTO_$1 + https://github.com/phenoscape/teleost-taxonomy-ontology + + + + + RGD.STRAIN + + + + + 3dmet + + + None + + 53504 + + ProteomicsDB Peptide + ^\d+$ + + + false + https://identifiers.org/proteomicsdb.peptide:$1 + ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein. + + + + Orphanet + + ^\d+$ + false + None + + + https://identifiers.org/orphanet:$1 + + + 85163 + Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases. + + + Antibody Registry + The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information. + ^\d{6}$ + false + + + + 493771 + None + + https://identifiers.org/antibodyregistry:$1 + + + + + cas + + + EHDAA2 + + + + + false + None + + LINCS Small Molecule + + + ^LSM-\d+$ + LSM-6306 + + https://identifiers.org/lincs.smallmolecule:$1 + The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC). + + + + ExO + + + + + bitterdb.rec + + + + https://www.ebi.ac.uk/merops/ + + + The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. + https://identifiers.org/merops:$1 + false + + + S01.001 + MEROPS peptidase database + ^[SCTAGMNU]\d{2}\.([AB]\d{2}|\d{3})$ + + + + + ^\w+(\.)?\w+(\.)?\w+ + + TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + TriTrypDB + false + None + Tb927.8.620 + + + + https://identifiers.org/tritrypdb:$1 + + + An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. + false + https://github.com/tucotuco/bco + rlwalls2008@gmail.com + + + + Biological Collections Ontology + + + https://www.ebi.ac.uk/ols/ontologies/bco/terms?iri=http://purl.obolibrary.org/obo/BCO_$1 + + + ^\d+$ + + None + + + false + + NameBank is a "biological name server" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context. + 2555646 + uBio NameBank + https://identifiers.org/ubio.namebank:$1 + + + NEXTPROT + + + + + Structural Classification of Protein + + https://identifiers.org/scop:$1 + 47419 + ^\d+$ + + The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes. + false + + None + + + + insdc.cds + + + + + + hssp + + + + + + MEROPS.INHIBITOR + + + AC119 + + https://identifiers.org/proglyc:$1 + ProGlycProt + + ^[A-Z]C\d{1,3}$ + + + false + ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information. + None + + + WB + + + + + false + + PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours. + ^PR\d{5}$ + + + + http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/ + PRINTS compendium of protein fingerprints + https://identifiers.org/prints:$1 + PR00001 + + + + + https://identifiers.org/ilx:$1 + None + + InterLex + 0101963 + InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. + false + + ^[0-9]+$ + + + aap-1 + false + + ^[a-z0-9-]+$ + + https://identifiers.org/aceview.worm:$1 + Aceview Worm + None + + + AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression. + + + + aop.relationships + + + + + + https://www.ncbi.nlm.nih.gov/pmc/ + https://identifiers.org/pmc:$1 + PMC\d+ + PMC3084216 + + PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature. + Pubmed Central + false + + + + + + PWY3O-214 + Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD). + ^PWY\w{2}\-\d{3}$ + Saccharomyces genome database pathways + None + + + + + https://identifiers.org/sgd.pathways:$1 + false + + + 288 + false + None + + BugBase Expt + ^\d+$ + + + https://identifiers.org/bugbase.expt:$1 + BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments. + + + + 'ocid' stands for "Ontology Concept Identifiers" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology. + + Ontology Concept Identifiers + false + None + ocid:[0-9]{12} + + https://identifiers.org/OCID:$1 + 190000021540 + + + ^\d+$ + https://www.nextprot.org/term/FA-$1 + None + false + + neXtProt family + None + 01406 + + + oryzabase.gene + + + + + + + MO + + + kegg.orthology + + + + + false + None + Unified Medical Language System + C2584994 + + The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank. + + + + ^C\d+$ + https://identifiers.org/umls:$1 + + + + wbls + + + + + + ORTH + + + + + + false + https://www.ebi.ac.uk/ols/ontologies/bcio/terms?iri=http://purl.obolibrary.org/obo/BCIO_$1 + + The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation. + The Behaviour Change Intervention Ontology + https://www.humanbehaviourchange.org/ + + + FBdv + + + + + + + topfind + + + + + px + + + P698 + + + + + + + go + + + + lrg + + + + + ^\d+$ + false + + 83088 + Paleobiology Database + + The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data. + None + + https://identifiers.org/paleodb:$1 + + + + + ^CCDS\d+\.\d+$ + None + https://identifiers.org/ccds:$1 + The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations. + CCDS13573.1 + false + + + + Consensus CDS + + + + Pathway Commons + false + + 485991 + + + Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language. + https://identifiers.org/pathwaycommons:$1 + ^\d+$ + None + + + + + + false + ^e\d+$ + http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1 + http://eawag-bbd.ethz.ch/ + e0333 + + EAWAG Biocatalysis/Biodegradation Database + + + The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information. + + + ^\d+$ + false + + + + 100 + + https://mips.helmholtz-muenchen.de/corum/ + The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded. + https://identifiers.org/corum:$1 + + + CORUM - the Comprehensive Resource of Mammalian protein complexes + + + GO + + + + + aspgd.locus + + + + + None + + false + https://identifiers.org/ligandbox:$1 + + D00001 + + + LigandBox + ^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$ + LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds. + + + + 3771877 + + ^\d+$ + https://identifiers.org/wikigenes:$1 + WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process. + false + + WikiGenes + + None + + + None + The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases. + + https://identifiers.org/topdb:$1 + + ^[A-Z0-9]+$ + AP00378 + false + Topology Data Bank of Transmembrane Proteins + + + + + + + CGD + + + Q9UKQ2 + TopFind + https://identifiers.org/topfind:$1 + false + + ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ + https://topfind.clip.msl.ubc.ca + + TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli. + + + + + https://identifiers.org/prodom:$1 + ProDom is a database of protein domain families generated from the global comparison of all available protein sequences. + ProDom + false + PD10000 + + None + ^PD\d+$ + + + + + + https://identifiers.org/pride.project:$1 + + PRIDE Project + The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects. + + ^P(X|R)D\d{6}$ + false + None + + + PXD000440 + + + Identifiers.org Ontology + false + None + ^[0-9a-zA-Z]+$ + + + DataCollection + Identifiers.org Ontology + https://identifiers.org/idoo:$1 + + + + http://www.cropontology.org/ontology/CO_348/Brassica + false + helpdesk@cropontology-curationtool.org + Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France). + https://www.ebi.ac.uk/ols/ontologies/co_348/terms?iri=http://purl.obolibrary.org/obo/CO_348_$1 + + + Brassica ontology + + + None + + + 004435 + https://www.jax.org/strain/$1 + Jackson Laboratories Strain + None + false + + + false + + ^spike\d{5}$ + None + spike00001 + + + SPIKE Map + SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps. + + https://identifiers.org/spike.map:$1 + + + + + BACMAP.BIOG + + + false + + + + + http://www.ebi.ac.uk/efo/efo.obo + http://www.ebi.ac.uk/efo + Experimental Factor Ontology + ^\d{7}$ + + + efo-users@lists.sourceforge.net + 0005147 + + + The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team. + https://identifiers.org/efo:$1 + + + ^\d+$ + false + 100000 + A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. + + + https://identifiers.org/greengenes:$1 + 16S rRNA gene database + + + http://greengenes.lbl.gov/ + + + + + GR_QTL + + + + Kyoto Encyclopedia of Genes and Genomes + + https://identifiers.org/kegg:$1 + http://www.genome.ad.jp/kegg/ + hsa00190 + true + + Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. + + + ^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$ + + + + + + 0005926 + https://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_$1 + A structured controlled vocabulary of the anatomy and development of the Zebrafish + ^\d{7}$ + van_slyke@zfin.org + + Zebrafish anatomy and development ontology + + + + https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources + false + + + None + NIST Chemistry WebBook + false + https://webbook.nist.gov/chemistry/ + + + + Metabolome Express + false + + + + + None + 36 + https://identifiers.org/mex:$1 + A public place to process, interpret and share GC/MS metabolomics datasets. + ^\d+$ + + + + + stap + + + + + ^PROB_c\d+$ + PROB_c0000005 + https://identifiers.org/probonto:$1 + probonto.dev@gmail.com + + ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities. + Probability Distribution Ontology + http://probonto.org + + false + + + + A vocabulary for cattle, chicken, horse, pig, and sheep breeds. + false + https://www.ebi.ac.uk/ols/ontologies/lbo/terms?iri=http://purl.obolibrary.org/obo/LBO_$1 + http://bioportal.bioontology.org/ontologies/LBO + + jreecy@iastate.edu + + + Livestock Breed Ontology + + + nje5@georgetown.edu + An ontology for glycans based on GlyTouCan, but organized by subsumption. + ^\d{8}$ + https://gnome.glyomics.org/ + + false + Glycan Naming and Subsumption Ontology (GNOme) + 10004892 + + + + https://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_$1 + + + + https://identifiers.org/bionumbers:$1 + 104674 + BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data. + + + ^\d+$ + false + + None + BioNumbers + + + false + None + None + OWL Ontology + http://www.w3.org/2002/07/owl#$1 + + + + + https://www.phe-culturecollections.org.uk/collections/ecacc.aspx + 90062901 + false + https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1 + European Collection of Authenticated Cell Culture + + None + + + + ardb + + + + ornaseq + + + + + sugarbind + + + + + https://github.com/OMIABIS/omiabis-dev + https://www.ebi.ac.uk/ols/ontologies/omiabis/terms?iri=http://purl.obolibrary.org/obo/OMIABIS_$1 + + false + + + Ontologized MIABIS + An ontological version of MIABIS (Minimum Information About BIobank data Sharing) + + mbrochhausen@gmail.com + + + + The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains. + + false + ^\w+$ + None + + https://identifiers.org/cath.domain:$1 + + + CATH domain + 1cukA01 + + + Foundational Model of Anatomy + + false + + mejino@u.washington.edu + + + + ^FMA:\d+$ + https://identifiers.org/FMA:$1 + The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. + http://si.washington.edu/projects/fma + + + 63189 + + + + multicellds.collection + + + + + ChEMBL + + + + + + false + + HGVM15354 + + + GWAS Central Marker + ^HGVM\d+$ + https://www.gwascentral.org/markers + https://identifiers.org/gwascentral.marker:$1 + GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker. + + + JCM + + + + + RL3R1_HUMAN + G protein-coupled receptor database + https://identifiers.org/gpcrdb:$1 + false + + None + + + + The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models. + + ^\w+$ + + + false + None + Galen Ontology + + + None + + + + false + https://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_$1 + + Ontology of species-neutral phenotypes observed in pathogen-host interactions. + + Pathogen Host Interaction Phenotype Ontology + ^\d{7}$ + alayne.cuzick@rothamsted.ac.uk + https://github.com/PHI-base/phipo + + 0000001 + + + + + geo + + + + https://www.ebi.ac.uk/ols/ontologies/hao/terms?iri=http://purl.obolibrary.org/obo/HAO_$1 + 0000187 + + http://hymao.org + + Hymenoptera Anatomy Ontology + + A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants) + diapriid@gmail.com + ^\d{7}$ + + false + + + + sabiork.reaction + + + + uberon + + + + + Data Use Ontology + mcourtot@gmail.com + https://www.ebi.ac.uk/ols/ontologies/duo/terms?iri=http://purl.obolibrary.org/obo/DUO_$1 + + false + + DUO is an ontology which represent data use conditions. + + + + https://github.com/EBISPOT/DUO + + + + BIOPROJECT + + + + + DRON + + + + + + + ^NX_\w+ + neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases. + NX_O00165 + + https://identifiers.org/nextprot:$1 + + nextProt + false + None + + + ^10.\w{4}/\w{10}$ + The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways. + + https://identifiers.org/spp:$1 + false + + None + 10.1621/vwN2g2HaX3 + Signaling Pathways Project + + + + ZDB-GENE-041118-11 + + ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN. + ^ZDB\-\w+\-\d+\-\d+$ + + + + + false + https://identifiers.org/zfin:$1 + Zebrafish Information Network + + http://zfin.org/ + + + + wb.rnai + + + + + YOR172W_571.0 + false + None + YeTFasCo + + The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats. + + ^\w+\_\d+(\.\d+)?$ + + + https://identifiers.org/yetfasco:$1 + + + + https://identifiers.org/gpmdb:$1 + GPM32310002988 + + None + The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. + + false + + ^GPM\d+$ + Global Proteome Machine Database + + + https://github.com/OOSTT/OOSTT + + + mbrochhausen@gmail.com + false + + An ontology built for representating the organizational components of trauma centers and trauma systems. + https://www.ebi.ac.uk/ols/ontologies/oostt/terms?iri=http://purl.obolibrary.org/obo/OOSTT_$1 + + + Ontology of Organizational Structures of Trauma centers and Trauma systems + + + + labo + + + + https://github.com/linikujp/OGSF + An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process. + https://www.ebi.ac.uk/ols/ontologies/ogsf/terms?iri=http://purl.obolibrary.org/obo/OGSF_$1 + linikujp@gmail.com + Ontology of Genetic Susceptibility Factor + false + + + + + + + + + false + http://www.atol-ontology.com + L'ontologie EOL décrit les conditions d'environnement des élevages d'animaux domestiques. Elle décrit plus particulièrement les modalités de l'alimentation, de l'environnement, de la structure des élevages et des systèmes d'élevage + Environment Ontology for Livestock + + + https://www.ebi.ac.uk/ols/ontologies/eol/terms?iri=http://purl.obolibrary.org/obo/EOL_$1 + pylebail@rennes.inra.fr + + + Cassava ontology + https://www.ebi.ac.uk/ols/ontologies/co_334/terms?iri=http://purl.obolibrary.org/obo/CO_334_$1 + false + Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016 + + helpdesk@cropontology-curationtool.org + http://www.cropontology.org/ontology/CO_334/Cassava + + + + + minid.test + + + + None + + + true + None + Minimal Anatomical Terminology + j.bard@ed.ac.uk + + + + + https://sitem.herts.ac.uk/aeru/ppdb/ + https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm + Pesticide Properties DataBase + false + + 1484 + None + + + + jaiswalp@science.oregonstate.edu + Plant Ontology + The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. + ^PO:\d+$ + + + + false + https://identifiers.org/PO:$1 + + + + + http://browser.planteome.org/amigo + 0009089 + + + + CDAO + + + + + + P671 + + + The cBioPortal for Cancer Genomics + + https://identifiers.org/cbioportal:$1 + + The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets. + false + ^[a-z0-9\_]+$ + None + laml_tcga_pub + + + + https://identifiers.org/swissregulon:$1 + false + + None + A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form. + + + SwissRegulon + + ^[A-Za-z0-9]+$ + AHR + + + + + https://www.ebi.ac.uk/ols/ontologies/orth/terms?iri=http://purl.obolibrary.org/obo/ORTH_$1 + + The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way. + Orthology Ontology + false + http://purl.org/net/orth + + + mesh.2013 + + + + + ADW + + + + + + + NEURONDB + + + false + + + GenProp0699 + ^GenProp\d+$ + https://identifiers.org/genprop:$1 + + None + + Genome Properties + Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome. + + + + The upper level ontology upon which OBO Foundry ontologies are built. + + + https://www.ebi.ac.uk/ols/ontologies/bfo/terms?iri=http://purl.obolibrary.org/obo/BFO_$1 + + + + Basic Formal Ontology + ^\d{7}$ + http://ifomis.org/bfo/ + false + 0000001 + phismith@buffalo.edu + + + true + Gene Ontology Registry + false + false + http://geneontology.org/ + + A database-specific registry supporting curation in the Gene Ontology + CHEBI + + + 1.10.10.200 + CATH superfamily + false + None + ^\d+(\.\d+(\.\d+(\.\d+)?)?)?$ + + + https://identifiers.org/cath.superfamily:$1 + + + The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification. + + + false + + https://www.reaxys.com + + None + Reaxys + 1257009 + + + + bgee.stage + + + + aphidbase.transcript + + + + + + + + KIAA0001 + false + None + https://identifiers.org/huge:$1 + + + ^KIAA\d{4}$ + Human Unidentified Gene-Encoded + The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project. + + + http://ensembl.org/glossary + The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used. + Ensembl Glossary + + + false + https://www.ebi.ac.uk/ols/ontologies/ensemblglossary/terms?iri=http://purl.obolibrary.org/obo/ENSEMBLGLOSSARY_$1 + + + RepeatsDB Structure + https://identifiers.org/repeatsdb.structure:$1 + + ^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$ + RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database. + false + None + 2gc4E + + + + wasila.dahdul@usd.edu + 0000086 + + + + None + + true + Teleost Anatomy Ontology + http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology + + + BCRTi001-A + + false + None + ^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$ + Human Pluripotent Stem Cell Registry + https://identifiers.org/hpscreg:$1 + + hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines). + + + + niaest + + + + + + + BIOMD0000000048 + + + + https://identifiers.org/biomodels.db:$1 + false + BioModels Database + https://www.ebi.ac.uk/biomodels/ + ^((BIOMD|MODEL)\d{10})|(BMID\d{12})$ + BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests. + + + + false + 0000210 + + + https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv + + Life cycle stages for Medaka + + Medaka Developmental Stages + https://www.ebi.ac.uk/ols/ontologies/olatdv/terms?iri=http://purl.obolibrary.org/obo/OLATDV_$1 + bgee@sib.swiss + ^\d{7}$ + + + + Akt_PKB + Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways. + ^[A-Za-z0-9_-]+$ + None + Cancer Staging Terms + https://identifiers.org/cst:$1 + + + + false + + + + + + ASIN + + + + + mirbase + + + https://identifiers.org/pkdb:$1 + PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. + + PKDB00198 + false + None + + PK-DB + ^PKDB[0-9]{5}$ + + + false + https://www.ebi.ac.uk/ols/ontologies/aro/terms?iri=http://purl.obolibrary.org/obo/ARO_$1 + + + 1000001 + card@mcmaster.ca + Antibiotic Resistance Ontology + + + https://github.com/arpcard/aro + ^\d{7}$ + + Antibiotic resistance genes and mutations + + + ms + + + + + 10595 + https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1 + EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure + false + https://www.ebi.ac.uk/pdbe/emdb + + + Electron Microscopy Public Image Archive + + + Biological Magnetic Resonance Data Bank + false + None + + 15000 + + + ^(bmr|bmse|bmst)?[0-9]{1,6}$ + https://identifiers.org/bmrb:$1 + BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy. + + + + tarbase + + + + + + false + None + + The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. + HEX1 + VMH reaction + [a-zA-Z0-9_\(\_\)\[\]]+ + https://identifiers.org/vmhreaction:$1 + + + + + + GENEDB + + + + WB + + + + + false + + None + h2o + + https://identifiers.org/vmhmetabolite:$1 + + [a-zA-Z0-9_\(\_\)\[\]]+ + + The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. + VMH metabolite + + + + jiezheng@pennmedicine.upenn.edu + + https://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_$1 + OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012. + Ontology of Biological and Clinical Statistics + https://github.com/obcs/obcs + false + + + + + + https://www.ebi.ac.uk/ols/ontologies/poro/terms?iri=http://purl.obolibrary.org/obo/PORO_$1 + false + + https://github.com/obophenotype/porifera-ontology + + ^\d{7}$ + + robert.thacker@stonybrook.edu + + An ontology describing the anatomical structures and characteristics of Porifera (sponges) + + 0000550 + Porifera Ontology + + + + http://research.amnh.org/atol/files/ + ^\d{7}$ + + ramirez@macn.gov.ar + An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow). + https://www.ebi.ac.uk/ols/ontologies/spd/terms?iri=http://purl.obolibrary.org/obo/SPD_$1 + 0000001 + + + + false + Spider Ontology + + + + + The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT). + + https://identifiers.org/meddra:$1 + + + + ^\d+$ + false + + 10015919 + Medical Dictionary for Regulatory Activities Terminology + None + + + + + greengenes + + + derivatives%2Fthiocyclam%20hydrochloride + + None + Alan Wood's Pesticides + false + http://www.alanwood.net/pesticides + http://www.alanwood.net/pesticides/$1.html + + + + false + https://www.jstor.org/ + https://identifiers.org/jstor:$1 + 3075966 + JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration. + + + ^\d+$ + Digital archive of scholarly articles + + + + + ^\d{7}$ + https://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBCV_$1 + false + https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo + cp390@cam.ac.uk + + http://purl.obolibrary.org/obo/fbcv + + 0000586 + + FlyBase Controlled Vocabulary + + A miscellaneous ontology of terms used for curation in FlyBase, including the DPO. + + + + ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information. + + + + + ProtoNet Cluster + https://identifiers.org/protonet.cluster:$1 + false + 4349895 + ^\d+$ + None + + + CORUM + + + + + + + ^\d{7}$ + https://www.ebi.ac.uk/ols/ontologies/fix/terms?iri=http://purl.obolibrary.org/obo/FIX_$1 + + false + + None + + Physico-chemical methods and properties + 0000390 + An ontology of physico-chemical methods and properties. + + + None + true + + Variation Modelling Collaboration + None + + + + + + ligandbox + + + batchelorc@rsc.org + 0000253 + + + ^\d{7}$ + + RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization. + https://www.ebi.ac.uk/ols/ontologies/rxno/terms?iri=http://purl.obolibrary.org/obo/RXNO_$1 + Name Reaction Ontology + https://github.com/rsc-ontologies/rxno + false + + + + https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo + + + The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession). + true + https://identifiers.org + chebi + false + true + https://identifiers.org/$1:$2 + Identifiers.org + + + + + GRAMENE.QTL + + + + + ro + + + + + FBdv + + + + STAP + + + + + + + pigqtldb + + + The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions. + false + YRC PDR + + + https://identifiers.org/yrcpdr:$1 + + 2673500 + + ^\d+$ + None + + + + DBPROBE + + + + CTD.DISEASE + + + + + p3db.site + + + + + T[A-Z]\d{7} + TR0000001 + Transport Systems Tracker + The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes. + false + https://identifiers.org/transyt:$1 + + None + + + + ^T3\d+$ + The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species. + + + false + None + + + T30002 + KEGG Metagenome + https://identifiers.org/kegg.metagenome:$1 + + + + + + EcoCyc_REF + + + None + Snapshot + false + None + + + + false + None + Terminologia Histologica + + H3.03.00.0.00007 + None + + + + None + Wikidata + https://identifiers.org/wikidata:$1 + Q2207226 + + Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic. + + false + + ^(Q|P)\d+$ + + + + + ConoServer + + + + https://identifiers.org/uniprot:$1 + P0DP23 + + The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information. + Universal Protein Knowledgebase + + + ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$ + + false + http://www.uniprot.org + + + + + + + MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. + false + None + MolMeDB + + ^[m,M]{2}[0-9]{5}[0-9]*$ + MM00040 + https://identifiers.org/molmedb:$1 + + + + + GOLD.GENOME + + + + + Search Tool for Interactions of Chemicals + None + + ^\w{14}$ + STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature. + BQJCRHHNABKAKU + https://identifiers.org/stitch:$1 + + false + + + + None + http://qudt.org/schema/qudt#$1 + baseDimensionEnumeration + Quantities, Units, Dimensions, and Types Ontology + None + false + + + + + + + knapsack + + + + http://eawag-bbd.ethz.ch/$1/$1_map.html + The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information. + EAWAG Biocatalysis/Biodegradation Database + + ala + + + + false + ^\w+$ + http://eawag-bbd.ethz.ch/ + + + ^\d{7}$ + false + + + Mouse Developmental Stages + + bgee@sib.swiss + + https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv + 0000066 + https://www.ebi.ac.uk/ols/ontologies/mmusdv/terms?iri=http://purl.obolibrary.org/obo/MMUSDV_$1 + Life cycle stages for Mus Musculus + + + + + + ATCC + + + hoganwr@gmail.com + + + + + Ontology of Medically Related Social Entities + https://www.ebi.ac.uk/ols/ontologies/omrse/terms?iri=http://purl.obolibrary.org/obo/OMRSE_$1 + https://github.com/ufbmi/OMRSE/raw/master/omrse-full.obo + This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations. + false + + https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview + + + PF3D7_1328700 + + + https://identifiers.org/ensembl.protist:$1 + + + Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes. + None + Ensembl Protists + false + ^\w+$ + + + mw.study + + + + + alejandra.gonzalez.beltran@gmail.com + The Statistical Methods Ontology + + + + https://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_$1 + STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots. + false + + http://stato-ontology.org/ + + + + Orphanet_C023 + ^Orphanet(_|:)C?\d+$ + None + false + https://identifiers.org/orphanet.ordo:$1 + + Orphanet Rare Disease Ontology + + The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. +It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10). + + + + + + + + + National Drug Data File + + + None + 002678 + false + None + + + + + mp + + + + ZEA + + + + aaeA + + http://ecoliwiki.net/ + + https://identifiers.org/ecoliwiki:$1 + false + + EcoliWiki from EcoliHub + + EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes. + ^[A-Za-z0-9-]+$ + + + + The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information. + + + 634515043 + false + + Online Computer Library Center (OCLC) WorldCat + None + ^[0-9]+$ + + https://identifiers.org/oclc:$1 + + + + RBO + + + + + DEGRADOME + + + + + GeneTree + + + + https://identifiers.org/sider.effect:$1 + false + None + SIDER Side Effect + C0017565 + + + + + SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER. + ^C\d+$ + + + + ASPGD.PROTEIN + + + + SCDO + + + + + None + Natural Product Activity and Species Source Database + NPC139585 + false + None + + + + + fernanda.dorea@sva.se + false + + Health Surveillance Ontology + + https://www.ebi.ac.uk/ols/ontologies/hso/terms?iri=http://purl.obolibrary.org/obo/HSO_$1 + + The health Surveillance Ontology (HSO) focuses on "surveillance system level data", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance. + https://w3id.org/hso + + + Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas. + + Human Cell Atlas Ontology + false + None + + https://www.ebi.ac.uk/ols/ontologies/hcao/terms?iri=http://purl.obolibrary.org/obo/HCAO_$1 + + + + CHIRO + + + + + + MODELDB + + + + + The Arabidopsis Information Resource + https://identifiers.org/tair.locus:$1 + 2200950 + + + + ^\d{7}$ + + The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS. + http://www.arabidopsis.org/ + false + + + KEGG.GENES + + + + + + + 00000268 + false + + https://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBBI_$1 + + A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. + http://cellimagelibrary.org/ + + dorloff@ncmir.ucsd.edu + ^\d+$ + Biological Imaging Methods Ontology + + + None + + + https://identifiers.org/cabri:$1 + + Common Access to Biological Resources and Information Project + dsmz_mutz-id:ACC 291 + CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it. + ^([A-Za-z]+)?(\_)?([A-Za-z-]+)\:([A-Za-z0-9 ]+)$ + + + false + + + P665 + + + + + + + wikidata + + + + None + + false + + Bilateria anatomy + None + + + The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools. +The initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch. + false + None + + + https://identifiers.org/RRID:$1 + AB_262044 + + Research Resource Identification + ^RRID:[a-zA-Z]+.+$ + + + + Software Heritage + None + 1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d + + + + Software Heritage is the universal archive of software source code. + false + https://identifiers.org/SWH:$1 + + ^swh:[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\S+)*$ + + + None + https://ratmine.mcw.edu/ontology/disease/RDO.obo + false + None + RGD Disease_Ontology + + + + + EDAM + + + + Conserved Domain Database at NCBI + https://www.ncbi.nlm.nih.gov/cdd + https://identifiers.org/cdd:$1 + + + ^(cd)?\d{5}$ + The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. + + cd00400 + false + + + + + + + + + UM-BBD_enzymeID + + + + foodb.compound + + + + + + bioportal + + + false + None + ^ERM[0-9]{8}$ + + https://identifiers.org/erm:$1 + ERM00000044 + + + The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project. + European Registry of Materials + + + https://github.com/DrugTargetOntology/DTO + + None + + false + Drug Target Ontology + + + + Mental Functioning Ontology + janna.hastings@gmail.com + https://www.ebi.ac.uk/ols/ontologies/mf/terms?iri=http://purl.obolibrary.org/obo/MF_$1 + https://github.com/jannahastings/mental-functioning-ontology + The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning. + + + false + + + + + + + ^\d+$ + https://identifiers.org/hpm.protein:$1 + None + false + The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins. + Human Proteome Map Protein + + 1968 + + + + The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. + false + + https://identifiers.org/vmhgene:$1 + ^[0-9]+\.[0-9]+ + + VMH Gene + None + 8639.1 + + + + + IAO + + + + bitterdb.cpd + + + + The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research. + + Bloomington Drosophila Stock Center + + None + 33607 + https://identifiers.org/bdsc:$1 + + ^\d+$ + false + + + + CTO: Core Ontology of Clinical Trials + + alpha.tom.kodamullil@scai.fraunhofer.de + The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials. + https://www.ebi.ac.uk/ols/ontologies/cto/terms?iri=http://purl.obolibrary.org/obo/CTO_$1 + https://github.com/ClinicalTrialOntology/CTO/ + false + + + + + RDFS + + + + + None + ^SEQF\d+$ + + https://identifiers.org/homd.seq:$1 + + The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information. + + HOMD Sequence Metainformation + SEQF1003 + + false + + + BARC-013845-01256 + false + + Glycine max Genome Database + SoyBase is a repository for curated genetics, genomics and related data resources for soybean. + https://identifiers.org/soybase:$1 + + + + ^\w+(\-)?\w+(\-)?\w+$ + http://soybase.org + + + + + https://identifiers.org/pubchem.substance:$1 + PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records. + NCBI PubChem database of chemical substances + + ^\d+$ + + + + false + 100101 + + https://www.ncbi.nlm.nih.gov/pcsubstance + + + Integrated Microbial Genomes Taxon + The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information. + ^\d+$ + 648028003 + false + + + https://identifiers.org/img.taxon:$1 + + None + + + + + P8121 + + + + + XL + + + + + + oostt + + + Toxic Process Ontology + + + Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity. + +The TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms. + +In applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp + https://www.ebi.ac.uk/ols/ontologies/txpo/terms?iri=http://purl.obolibrary.org/obo/TXPO_$1 + false + + https://toxpilot.nibiohn.go.jp/ + y-yamagata@nibiohn.go.jp + + + + Database of Aligned Ribosomal Complexes + ^\d+$ + https://identifiers.org/darc:$1 + DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors. + false + None + + + + + 1250 + + + co_365 + + + + + https://www.ebi.ac.uk/ols/ontologies/tads/terms?iri=http://purl.obolibrary.org/obo/TADS_$1 + dsonensh@odu.edu + ^\d{7}$ + + + + + + https://www.vectorbase.org/ontology-browser + The anatomy of the Tick, <i>Families: Ixodidae, Argassidae</i> + Tick Anatomy Ontology + 0000547 + false + http://purl.obolibrary.org/obo/tads.obo + + + uo + + + + + ped + + + + + + + FIX + + + + https://identifiers.org/autdb:$1 + + ADA + AutDB + ^[A-Z]+[A-Z-0-9]{2,}$ + None + AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder. + + + false + + + https://identifiers.org/ligandbook:$1 + 785 + false + + None + + ^[0-9]+$ + + Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community. + LigandBook + + + + 0002502 + false + https://github.com/obophenotype/mouse-anatomy-ontology + + + + ^MA:\d+$ + https://identifiers.org/MA:$1 + A structured controlled vocabulary of the adult anatomy of the mouse (Mus) + + + + + Mouse adult gross anatomy + + + None + ^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$ + + + LIPID MAPS + https://identifiers.org/lipidmaps:$1 + The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy. + LMPR0102010012 + + + false + + + + + + cryoem + + + https://identifiers.org/grid:$1 + + International coverage of the world's leading research organisations, indexing 92% of funding allocated globally. + Global Research Identifier Database + None + false + + ^grid\.[0-9]+\.[a-f0-9]{1,2}$ + + grid.225360.0 + + + + vasilevs@ohsu.edu + + + + + http://purl.obolibrary.org/obo/mondo.obo + 0000001 + https://monarch-initiative.github.io/mondo + + https://www.ebi.ac.uk/ols/ontologies/mondo/terms?iri=http://purl.obolibrary.org/obo/MONDO_$1 + A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology. + + Monarch Disease Ontology + ^\d{7}$ + false + + + None + miRNA Target Prediction at EMBL + miR-1 + http://www.russelllab.org/miRNAs/ + false + + + + + dictybase.est + + + + + false + RiceNetDB Gene + None + + + + https://identifiers.org/ricenetdb.gene:$1 + LOC_Os01g49190.1 + RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. + ^LOC\_Os\d{1,2}g\d{5}\.\d$ + + + + + CIO + + + false + None + + + + ^(\w+)?\d+$ + + The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community. + NASC code + N1899 + https://identifiers.org/nasc:$1 + + + cl3603 + https://identifiers.org/cldb:$1 + ^(cl|tum)\d+$ + false + None + + + The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories. + + + Cell Line Database + + + https://identifiers.org/unists:$1 + UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences. + + + + false + + + ^\d+$ + None + 456789 + Database of Sequence Tagged Sites + + + bdsc + + + + + GENEPIO + + + + + Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee. + https://identifiers.org/bgee.gene:$1 + FBgn0000015 + + false + Bgee gene + ^[A-Za-z]+\d+$ + + None + + + + + iceo + + + + + https://github.com/obo-behavior/behavior-ontology/ + g.gkoutos@bham.ac.uk + false + + + + + + ^\d{7}$ + https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo + Neuro Behavior Ontology + https://www.ebi.ac.uk/ols/ontologies/nbo/terms?iri=http://purl.obolibrary.org/obo/NBO_$1 + 0000564 + An ontology of human and animal behaviours and behavioural phenotypes + + + + + SGD + + + + cco + + + + CATH + + + + + + + https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http://purl.obolibrary.org/obo/CHEMINF_$1 + Chemical Information Ontology + https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl + false + + https://github.com/semanticchemistry/semanticchemistry + + egon.willighagen@gmail.com + + Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them. + + + false + + ASPL0000349247 + + Aspergillus Genome Database + https://identifiers.org/aspgd.locus:$1 + + + + The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information. + http://www.aspergillusgenome.org/ + ^[A-Za-z_0-9]+$ + + + + bioRxiv + + + + http://www.semantic-systems-biology.org/apo + Regulation of Transcription Ontology + vladimir.n.mironov@gmail.com + Regulation of Transcription + https://www.ebi.ac.uk/ols/ontologies/reto/terms?iri=http://purl.obolibrary.org/obo/RETO_$1 + + false + + + + + + eco + + + + false + + None + 886 + ViralZone + + http://viralzone.expasy.org/ + https://viralzone.expasy.org/$1 + + + + biolink + + + + The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level. + Variation Ontology + + + http://variationontology.org + + https://identifiers.org/vario:$1 + mauno.vihinen@med.lu.se + + ^\d+$ + false + + + + 0376 + + + + P685 + + + + + NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments. + + ^\d+$ + false + + + None + 265 + https://identifiers.org/neurondb:$1 + NeuronDB + + + + + ENCODE + + + Viral Bioinformatics Resource Center + None + + 35742 + ^\d+$ + false + https://identifiers.org/vbrc:$1 + + + The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis. + + + + mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages. + + https://identifiers.org/mirex:$1 + false + + ^\d+(\w+)?$ + None + 165a + + + mirEX + + + issn + + + + + MULTICELLDS.CELL_LINE + + + + + + + DrugCentral + + + + + ^[0-9][A-Za-z0-9]{3}$ + + The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. + + + Protein Data Bank + https://www.rcsb.org/ + 2gc4 + false + + + https://identifiers.org/pdb:$1 + + + + + LCL-2085 + + https://identifiers.org/lincs.cell:$1 + + + (^LCL-\d+$)|(^LDC-\d+$)|(^ES-\d+$)|(^LSC-\d+$)|(^LPC-\d+$) + LINCS Cell + false + None + + The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease. + + + false + ^[AEP]-\w{4}-\d+$ + None + E-MTAB-2037 + + GXA Expt + The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments. + + https://identifiers.org/gxa.expt:$1 + + + + + ^\d+$ + None + ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins. + + + false + ProteomicsDB Protein + + + https://identifiers.org/proteomicsdb.protein:$1 + 53504 + + + + + stato + + + false + + An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators. + Sustainable Development Goals Interface Ontology + https://www.ebi.ac.uk/ols/ontologies/sdgio/terms?iri=http://purl.obolibrary.org/obo/SDGIO_$1 + https://github.com/SDG-InterfaceOntology/sdgio + + + + + + dbProbe + + + + + sabiork.compound + + + mi + + + + + None + + + ^[0-9]+$ + NMR Shift Database + NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. + https://identifiers.org/nmrshiftdb2:$1 + 234 + false + + + ^\d+$ + None + 351 + NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters. + + https://identifiers.org/napp:$1 + + + false + Nucleic Acids Phylogenetic Profiling + + + + Cell Cycle Ontology + false + http://www.semantic-systems-biology.org/apo + + 0000003 + + The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process. + + vladimir.n.mironov@gmail.com + + https://identifiers.org/CCO:$1 + ^CCO\:\w+$ + + + + + GEO + + + + + + None + MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved. + + https://identifiers.org/macie:$1 + M0001 + false + ^M\d{4}$ + + Mechanism, Annotation and Classification in Enzymes + + + + charprot + + + + + STATO + + + + + pazar + + + + + + ^\d+$ + false + http://www.jcm.riken.go.jp/ + + 17254 + + Japan Collection of Microorganisms + https://identifiers.org/jcm:$1 + + The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2. + + + + Repeated CRISPR ("clustered regularly interspaced short palindromic repeats") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data. + + false + None + https://identifiers.org/crisprdb:$1 + + + CRISPRdb + 551115 + + ^[0-9]+$ + + + + false + http://www.obofoundry.org/ + The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. + true + chebi + OBO Foundry + false + + + ^\d+$ + false + 21393 + + + + Oryzabase Mutant + None + Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information. + + https://identifiers.org/oryzabase.mutant:$1 + + + + + SABIORK.EC + + + RXNORM + + + + + + JSTOR + + + + The Ontology of Genes and Genomes + https://bitbucket.org/hegroup/ogg + + https://www.ebi.ac.uk/ols/ontologies/ogg/terms?iri=http://purl.obolibrary.org/obo/OGG_$1 + OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. + false + yongqunh@med.umich.edu + + + + + + + + + YEASTINTRON + + + DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature. + DP00086r013 + + https://identifiers.org/disprot.region:$1 + false + + None + DisProt region + ^DP\d{5}r\d{3}$ + + + + The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products. + Candida Genome Database + http://www.candidagenome.org/ + ^CAL\d{7}$ + + + + false + CAL0003079 + + + https://identifiers.org/cgd:$1 + + + + + ^MCDS_C_[a-zA-Z0-9]{1,10}$ + false + None + + MCDS_C_0000000001 + https://identifiers.org/multicellds.collection:$1 + MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections). + + MultiCellDS collection + + + + false + ^\w+$ + + https://identifiers.org/toxoplasma:$1 + + + TGME49_053730 + + None + ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + ToxoDB + + + + + https://identifiers.org/glycoepitope:$1 + EP0311 + GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes. + false + None + GlycoEpitope + + + ^EP\d{4}$ + + + + + + 0001157 + false + keilbeck@genetics.utah.edu + https://github.com/The-Sequence-Ontology/SO-Ontologies + + + https://identifiers.org/SO:$1 + + + + https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo + The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data. + Sequence types and features ontology + ^SO:\d{7}$ + + + + + + http://www.vectorbase.org/index.php + + + Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens + VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis. + https://identifiers.org/vectorbase:$1 + ISCW007415 + ^\D{4}\d{6}(\-\D{2})?$ + false + + + + + tissuelist + + + + mfmo + + + + + OCI + + + + + + alanruttenberg@gmail.com + + + false + The Oral Health and Disease Ontology + https://purl.obolibrary.org/obo/ohd/home + + The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records. + https://www.ebi.ac.uk/ols/ontologies/ohd/terms?iri=http://purl.obolibrary.org/obo/OHD_$1 + + + false + + + RiceNetDB miRNA + None + ^osa-miR\d{3,5}[a-z]{0,1}$ + osa-miR446 + https://identifiers.org/ricenetdb.mirna:$1 + RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. + + + + + ^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$ + https://identifiers.org/addgene:$1 + None + Addgene Plasmid Repository + + Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world. + + false + 50943 + + + + ^ENST\d{11}$ + ENST00000407236 + None + The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information. + ExAC Transcript + + + https://identifiers.org/exac.transcript:$1 + false + + + + + + Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed. + None + Open Data for Access and Mining + false + frim1 + https://identifiers.org/odam:$1 + + ^[A-Za-z0-9]+$ + + + + chembl.target + + + + ICARDA - TDv5 - Sept 2018 + + http://www.cropontology.org/ontology/CO_323/Barley + + https://www.ebi.ac.uk/ols/ontologies/co_323/terms?iri=http://purl.obolibrary.org/obo/CO_323_$1 + false + Barley ontology + helpdesk@cropontology-curationtool.org + + + false + + Medical Action Ontology + + https://github.com/monarch-initiative/MAxO + + Leigh.Carmody@jax.org + + An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations. + https://www.ebi.ac.uk/ols/ontologies/maxo/terms?iri=http://purl.obolibrary.org/obo/MAXO_$1 + + + + The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily. + National Drug Code + + false + None + https://identifiers.org/ndc:$1 + + + ^\d+\-\d+\-\d+ + 0002-1975-61 + + + http://www.ciliate.org/ + + https://identifiers.org/tgd:$1 + TTHERM_00648910 + false + + The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature. + ^TTHERM\_\d+$ + + + Tetrahymena Genome Database + + + + Human Developmental Stages + https://www.ebi.ac.uk/ols/ontologies/hsapdv/terms?iri=http://purl.obolibrary.org/obo/HSAPDV_$1 + ^\d{7}$ + https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv + 0000194 + false + + Life cycle stages for Human + + + bgee@sib.swiss + + + + + + TIGRFAM + + + + + + gdsc + + + + SwissLipids + + None + ^SLM:\d+$ + https://identifiers.org/SLM:$1 + SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions. + false + 000048885 + + + + + AEO + + + + + + ocid + + + + Clytia hemisphaerica Development and Anatomy Ontology + https://github.com/EBISPOT/clyh_ontology + + lucas.leclere@obs-vlfr.fr + Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica. + false + + + https://www.ebi.ac.uk/ols/ontologies/clyh/terms?iri=http://purl.obolibrary.org/obo/CLYH_$1 + + + ^\d+$ + + + 614 + + The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all. + false + None + https://identifiers.org/biocatalogue.service:$1 + + BioCatalogue Service + + + + CHEMBL3467 + + ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. + ChEMBL target + false + + + + + https://identifiers.org/chembl.target:$1 + None + ^CHEMBL\d+$ + + + TO + + + + + + MI + + + + + omrse + + + + + + orcid + + + uo + + + + + + + 16333295 + PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. + ^\d+$ + PubMed + https://identifiers.org/pubmed:$1 + + false + + + https://www.ncbi.nlm.nih.gov/pubmed + + + + glida.ligand + + + + + + ECYANO.ENTITY + + + + ncit + + + + + + + UniProtKB + + + https://identifiers.org/mmp.db:$1 + ^MMP\d+.\d+$ + MarDB + false + + MMP02954345.1 + + + + MarDB includes all sequenced marine microbial genomes regardless of level of completeness. + None + + + false + + + frederic.bastian@unil.ch + + ^\d+$ + + + + 2170610 + + + https://identifiers.org/taxonomy:$1 + http://purl.obolibrary.org/obo/ncbitaxon.obo + The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined. + https://github.com/obophenotype/ncbitaxon + + NCBI organismal classification + + + + + bacmap.biog + + + + + vfdb.gene + + + + + + ^\d+$ + false + None + ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information. + + ProtoNet ProteinCard + 16941567 + + https://identifiers.org/protonet.proteincard:$1 + + + https://identifiers.org/begdb:$1 + false + None + Benchmark Energy & Geometry Database + The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods. + + + + 4214 + ^[0-9]+$ + + + + + + SUBTIWIKI + + + sabiork.kineticrecord + + + + + Ontology about C. elegans and other nematode phenotypes + https://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPHENOTYPE_$1 + ^\d{7}$ + + + https://github.com/obophenotype/c-elegans-phenotype-ontology + false + C. elegans phenotype + 0000983 + + + + + cgrove@caltech.edu + + + + + https://identifiers.org/aop.stressor:$1 + International repository of Adverse Outcome Pathways. + ^\d+$ + false + None + + 9 + + AOPWiki (Stressor) + + + + + interpro + + + None + + ArachnoServer + + AS000060 + https://identifiers.org/arachnoserver:$1 + + false + ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information. + + + ^AS\d{6}$ + + + + ^\w.+$ + Genotype-Tissue Expression + https://identifiers.org/gtex:$1 + + false + None + + + + BRIP1 + The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation. + + + MPID + + + + + + tto + + + + + iuphar.receptor + + + + + P6245 + + + + NORINE + + + + + + mfoem + + + + neXtProt + + + + + + LipidBank + None + + LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins. + ^\w+\d+$ + https://identifiers.org/lipidbank:$1 + + false + BBA0001 + + + + + + idocovid19 + + + + P6778 + + + + https://www.ebi.ac.uk/ols/ontologies/sio/terms?iri=http://purl.obolibrary.org/obo/SIO_$1 + Semanticscience Integrated Ontology + + https://github.com/micheldumontier/semanticscience + + sio-ontology@googlegroups.com + false + + + The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes. + + + + Cellular Phenotypes + None + None + + false + + + http://www.w3.org/1999/02/22-rdf-syntax-ns + false + + RDF + + http://www.w3.org/1999/02/22-rdf-syntax-ns#$1 + Resource Description Framework + None + + + arrayexpress + + + + + ird.segment + + + + + false + ^\w+$ + + http://www.theseed.org + + https://identifiers.org/seed:$1 + + + The SEED; + + This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems. + Biotin_biosynthesis + + + + + + cheminf + + + sgd.pathways + + + + + MimoDB + MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank. + ^\d+$ + 1 + None + https://identifiers.org/mimodb:$1 + + + false + + + + + None + + https://identifiers.org/gmd.ref:$1 + Golm Metabolome Database Reference Substance + false + + + 8cf84adb-b4db-4807-ac98-0004247c35df + ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + + Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances. + + + SGD + + + + + img.taxon + + + + + mint + + + + + + https://www.sgn.cornell.edu/ + https://identifiers.org/sgn:$1 + false + + + + + 0001 + + Sol Genomics Network + The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant. + ^\d+$ + + + rs17852708 + https://identifiers.org/fsnp:$1 + + false + + The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification. + + F-SNP + + ^rs\d+$ + None + + + false + + ^\d+$ + http://www.gramene.org/ + Gramene protein + + + https://identifiers.org/gramene.protein:$1 + + + 78073 + Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene. + + + ^EGAD\d{11}$ + + + https://identifiers.org/ega.dataset:$1 + + + EGAD00000000001 + European Genome-phenome Archive Dataset + https://ega-archive.org/ + The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'. + + false + + + LGIC + + + + + ^DP\d{5}$ + DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature. + + DP00003 + https://identifiers.org/disprot:$1 + false + + None + DisProt + + + + + + + + EFO + + + + + ECOCORE + + + KEGG Reaction Database + KEGG reaction contains our knowledge on the universe of reactions that are relevant to life. + + R00100 + http://www.genome.jp/kegg/reaction/ + + false + + https://identifiers.org/kegg.reaction:$1 + ^R\d+$ + + + + + + + + + doi + + + + + https://identifiers.org/atc:$1 + A10BA02 + + ^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$ + + + Anatomical Therapeutic Chemical Classification System + The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels. + None + + false + + + GENECARDS + + + + + + RHEA + + + + + asin + + + + + pseudo + + + + GeneWiki + + + + + + P4317 + + + + + + PMID + + + + VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus. + VFDB Genus + false + ^\w+$ + None + Chlamydia + + + + https://identifiers.org/vfdb.genus:$1 + + + APHIDBASE.TRANSCRIPT + + + + + ^[A-Z]+[0-9]+(\.\d+)?$ + http://www.ebi.ac.uk/ena/ + BN000065 + https://identifiers.org/ena.embl:$1 + false + + + European Nucleotide Archive + + + The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers. + + + + + E-cyanobacterium entity + false + https://identifiers.org/ecyano.entity:$1 + 23 + + + ^\d+$ + None + + E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities. + + + + https://identifiers.org/jaxmice:$1 + None + + ^\d+$ + JAX Mice + JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory. + + false + + + 005012 + + + + + repeatsdb.protein + + + + PPO + + + + The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced. + Ax1 + ^[AMCST][0-9x][0-9]$ + + + false + https://identifiers.org/degradome:$1 + None + Degradome Database + + + + + CPX-263 + ^CPX-[0-9]+$ + Complex Portal database of macromolecular complexes + https://www.ebi.ac.uk/complexportal + https://identifiers.org/complexportal:$1 + false + + + + + + + A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases. + + + + ENSEMBL.METAZOA + + + + + https://identifiers.org/EO:$1 + 0007114 + jaiswalp@science.oregonstate.edu + + https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo + false + Plant Experimental Conditions Ontology + + + + + http://planteome.org/ + + + ^(P)?EO\:\d{7}$ + The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies. + + + Dublin Core Metadata Vocabulary + + + None + None + https://dublincore.org/specifications/dublin-core/dcmi-terms/#$1 + false + + + title + + + false + + + ^GCST\d{6}\d*$ + + None + GWAS Catalog + The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide. + https://identifiers.org/gcst:$1 + GCST000035 + + + false + + + http://uberon.org + https://identifiers.org/UBERON:$1 + + + + + cjmungall@lbl.gov + Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. + 2005080 + + + ^UBERON:\d+$ + http://purl.obolibrary.org/obo/uberon/basic.obo + Uber Anatomy Ontology + + + + + Flybase Quantitative Loci + None + + false + None + + + RESID + + + + + ega.study + + + + + dbSNP + + + + + STOREDB + + + + + + false + + https://github.com/PlantPhenoOntology/PPO + + + + An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales. + Plant Phenology Ontology + rlwalls2008@gmail.com + https://www.ebi.ac.uk/ols/ontologies/ppo/terms?iri=http://purl.obolibrary.org/obo/PPO_$1 + + + E. coli Metabolite Database + http://ecmdb.ca/compounds/$1 + false + None + + ECMDB00005 + None + ^ECMDB\d+$ + + + + https://identifiers.org/wormpep:$1 + Wormpep + None + Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project. + + CE28239 + + + false + ^CE\d{5}$ + + + TA_H3 + + ^[A-Z-_0-9]+$ + Eukaryotic Promoter Database + + + false + http://epd.vital-it.ch/ + + https://identifiers.org/epd:$1 + The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis. + + + + + + + MIM + + + http://ccdb.ucsd.edu/CCDBWebSite/sao.html + slarson@ncmir.ucsd.edu + Subcellular Anatomy Ontology + true + + + + None + + + + + CTX + + + + + mex + + + + BitterDB Compound + + + BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds. + + + ^\d+$ + None + 46 + https://identifiers.org/bitterdb.cpd:$1 + false + + + + + OBO + + + SSF57615 + + ^\w+$ + + SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt. + https://identifiers.org/supfam:$1 + SUPERFAMILY + + + false + None + + + + + false + + jupp@ebi.ac.uk + + Cellular Microscopy Phenotype Ontology + CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. + http://www.ebi.ac.uk/cmpo + https://www.ebi.ac.uk/ols/ontologies/cmpo/terms?iri=http://purl.obolibrary.org/obo/CMPO_$1 + + + ^[A-Z0-9*:]+$ + false + https://identifiers.org/imgt.hla:$1 + A*01:01:01:01 + + + + + IMGT/HLA human major histocompatibility complex sequence database + http://www.ebi.ac.uk/imgt/hla + + IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature. + + + + Dictybase Gene + The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information. + https://identifiers.org/dictybase.gene:$1 + + + ^DDB_G\d+$ + false + + + DDB_G0267522 + + None + + + + panther.node + + + + SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature. + + false + ^SIGNOR\-[A-Z]+\d+$ + + None + + https://identifiers.org/signor:$1 + Signaling Network Open Resource + SIGNOR-C41 + + + BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data. + https://identifiers.org/brenda:$1 + ^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$ + + + + + http://www.brenda-enzymes.info + + 1.1.1.1 + false + + BRENDA, The Comprehensive Enzyme Information System + + + toxoplasma + + + + + + VFG2154 + + VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes. + + + VFDB Gene + false + None + https://identifiers.org/vfdb.gene:$1 + ^\w+$ + + + + + mb4@sanger.ac.uk + http://www.sanger.ac.uk/Users/mb4/PLO/ + Plasmodium Life Cycle + + true + None + + + cldb + + + + + + + OGMS + + + + + hinv.protein + + + + + + Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl. + + GeneTree + ^ENSGT\d+$ + false + None + https://identifiers.org/genetree:$1 + + ENSGT00550000074763 + + + Laboratory of Systems Pharmacology Compound ID + None + false + https://labsyspharm.shinyapps.io/smallmoleculesuite/ + + + + + https://github.com/obophenotype/upheno + + https://github.com/obophenotype/upheno/blob/master/upheno.owl + vasilevs@ohsu.edu + The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology. + https://www.ebi.ac.uk/ols/ontologies/upheno/terms?iri=http://purl.obolibrary.org/obo/UPHENO_$1 + + Unified Phenotype Ontology + false + + + + + + miRBase Families + None + false + MIPF0000002 + http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1 + http://www.mirbase.org/ + + + ExO + + + + + + XAO + + + + + ga4ghdos + + + + + + PROTEOMICSDB.PROTEIN + + + Classification of Transcription Factors in Mammalia + + None + http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1 + + http://tfclass.bioinf.med.uni-goettingen.de + false + 2.1.1 + + + https://www.ebi.ac.uk/chembl + ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. + + false + + + ^CHEMBL\d+$ + ChEMBL compound + + https://identifiers.org/chembl.compound:$1 + + CHEMBL465070 + + + + + TRANS + + + + + + fsnp + + + + YRCPDR + + + + + + GXA Gene + None + The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes. + + + https://identifiers.org/gxa.gene:$1 + false + ^\w+$ + AT4G01080 + + + + vfdb.genus + + + + + The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes. + ^\w+$ + http://www.vbase2.org/ + https://identifiers.org/vbase2:$1 + + + Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse + humIGHV025 + false + + + + + + https://identifiers.org/snomedct:$1 + false + http://snomed.info/ + + ^(\w+)?\d+$ + + + + SNOMED CT + 284196006 + + SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc. + + + + + Human Phenotype Ontology + 0011140 + false + + + dr.sebastian.koehler@gmail.com + + http://www.human-phenotype-ontology.org/ + + https://identifiers.org/HP:$1 + + The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM. + + http://purl.obolibrary.org/obo/hp.obo + ^HP:\d{7}$ + + + BioSystems + https://identifiers.org/biosystems:$1 + 001 + + ^\d+$ + None + + The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources. + false + + + + + https://identifiers.org/iceberg.element:$1 + false + + + ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements. + + ICEberg element + ^\d+$ + 100 + None + + + + + CGD + + + + + + DAILYMED + + + + foaf + + + + + nbn + + + + + + https://identifiers.org/eggnog:$1 + false + eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories). + ^\w+$ + veNOG12876 + + + + eggNOG + None + + + GDS1234 + + NCBI Gene Expression Omnibus + The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval. + + + + http://www.ncbi.nlm.nih.gov/geo/ + https://identifiers.org/geo:$1 + false + + ^G(PL|SM|SE|DS)\d+$ + + + None + + AOPWiki + ^\d+$ + false + https://identifiers.org/aop:$1 + 98 + International repository of Adverse Outcome Pathways. + + + + + + + false + http://www.imgt.org/ + https://identifiers.org/imgt.ligm:$1 + + + + IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates. + + + ImMunoGeneTics database covering immunoglobulins and T-cell receptors + M94112 + ^M\d+$ + + + interpro + + + + + + + PiroplasmaDB + None + TA14985 + https://identifiers.org/piroplasma:$1 + false + ^TA\d+$ + + + PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + + + + + flowrepository + + + doid + + + + + + inchikey + + + + + A modeling paradigm-specific registry of prefixes and their URL expansions + false + Biolink Model Registry + false + true + doi + https://raw.githubusercontent.com/biolink/biolink-model + + + imgt.hla + + + + + + dragondb.allele + + + + + jws + + + + rgd + + + + + + TGD + + + + + + VARIO + + + spike.map + + + + + + + MIRIAM.COLLECTION + + + + lincs.smallmolecule + + + + + + polbase + + + gerhard.mayer@rub.de + http://www.psidev.info/groups/controlled-vocabularies + https://identifiers.org/MS:$1 + + + 1000560 + + + + false + + + The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance. + ^MS:\d{7}$ + Mass spectrometry ontology + + + + + + data_1664 + false + + https://identifiers.org/edam:$1 + EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications). + + Bioinformatics operations, data types, formats, identifiers and topics + ^(data|topic|operation|format)\_\d{4}$ + edam@elixir-dk.org + + http://edamontology.org + + + + + gcst + + + + 0000001 + smr@stowers.org + + + https://github.com/obophenotype/planaria-ontology + https://www.ebi.ac.uk/ols/ontologies/plana/terms?iri=http://purl.obolibrary.org/obo/PLANA_$1 + + ^\d{7}$ + + planaria-ontology + false + PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes. + + + + https://identifiers.org/dragondb.allele:$1 + DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information. + None + ^\w+$ + + + + DragonDB Allele + cho + false + + + + hcvdb + + + + + + + vfdb.gene + + + PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information. + false + None + ^\w+$ + + https://identifiers.org/phosphopoint.protein:$1 + + AURKA + + + PhosphoPoint Phosphoprotein + + + SO + + + + + https://identifiers.org/aop.relationships:$1 + ^\d+$ + 5 + AOPWiki (Key Event Relationship) + + + International repository of Adverse Outcome Pathways. + false + None + + + + + + fbcv + + + + H00076 + + + The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system. + None + ^H\d+$ + + + KEGG Disease + false + + https://identifiers.org/kegg.disease:$1 + + + kegg.module + + + + + SIBO + + + + + The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. + false + + NCBI Protein + + CAA71118.1 + https://www.ncbi.nlm.nih.gov/protein + + + + ^(\w+\d+(\.\d+)?)|(NP_\d+)$ + https://identifiers.org/ncbiprotein:$1 + + + + OBO_REL + + + + ENVO + + + + + trichdb + + + + + + + fypo + + + NADELLA_PRKAR1A_TARGETS_DN + Molecular Signatures Database + false + + https://www.gsea-msigdb.org + + None + + + + + omiabis + + + false + Internal OBO and PyOBO Relations + None + + + None + + + + None + KEGG Genes + + + false + + KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources. + + + + ^\w+:[\w\d\.-]*$ + https://identifiers.org/kegg.genes:$1 + bsu:BSU01340 + + + + hgnc.symbol + + + + + System Science of Biological Dynamics dataset + + https://ssbd.riken.jp/database/dataset/$1 + 1 + None + https://ssbd.riken.jp + false + + + P6689 + + + + + + + modeldb + + + + NCBI PubChem database of chemical structures + + PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records. + + http://pubchem.ncbi.nlm.nih.gov + https://identifiers.org/pubchem.compound:$1 + + false + 100101 + + ^\d+$ + + + + + Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids. + false + None + Ligand Expo + + https://identifiers.org/ligandexpo:$1 + ABC + + + ^(\w){3}$ + + + + + DDANAT + + + + + noncodev4.gene + + + + rrid + + + + + ga4ghdos + + + + + CRISPRDB + + + + + + + TS-0285 + Tissue List + ^TS-\d{4}$ + + false + None + https://identifiers.org/tissuelist:$1 + + The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified. + + + + + FOODON + + + + + microscope + + + ROUGE + + + + + + + noncodev4.rna + + + + + CTD.CHEMICAL + + + DISPROT + + + + + + + biocyc + + + + false + Biomedical Informatics Research Network Lexicon + None + + None + + + + CDD + + + + + HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein. + + + 102l + + Database of homology-derived secondary structure of proteins + ^\w{4}$ + false + None + https://identifiers.org/hssp:$1 + + + + Kaggle + https://identifiers.org/kaggle:$1 + ^[0-9a-zA-Z\-]+\/[0-9a-zA-Z\-]+$ + nasa/kepler-exoplanet-search-results + false + + + + Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions. + None + + + https://identifiers.org/splash:$1 + false + + None + + Spectra Hash Code + + The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance. + ^splash\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$ + + splash10-0zq2000000-77302b0326a418630a84 + + + NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts. + + https://identifiers.org/noncodev4.rna:$1 + + + false + + NONCODE v4 Transcript + ^NONHSAT\d{6}$ + NONHSAT000001 + None + + + + ^[A-Z0-9]+$ + https://identifiers.org/unii:$1 + false + The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information. + 3G6A5W338E + + Unique Ingredient Identifier + + + + None + + + + SNR17A + https://identifiers.org/yid:$1 + Yeast Intron Database v3 + + false + None + + The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]. + + ^[A-Z0-9]+$ + + + bsg-000052 + FAIRsharing + The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies. + ^bsg-[dscp]?\d{6}$ + + None + + + + https://identifiers.org/fairsharing:$1 + false + + + + DOI + + + + http://www.xenbase.org/anatomy/xao.do?method=display + + ^\d{7}$ + + https://www.ebi.ac.uk/ols/ontologies/xao/terms?iri=http://purl.obolibrary.org/obo/XAO_$1 + + + Xenopus Anatomy Ontology + false + + XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis. + + 0004486 + esegerd3@gmail.com + + + UniGene + A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location. + https://identifiers.org/unigene:$1 + ^\d+$ + None + 4900 + + false + + + + + + https://identifiers.org/pride:$1 + + ^\d+$ + + + The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays. + PRIDE Controlled Vocabulary + https://github.com/PRIDE-Utilities/pride-ontology + 1 + false + + + + + + + + + NUCLEARBD + + + CGD + + + + + + + EMAPA + + + + + The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits. + + ^\d+$ + false + + + International Union of Pharmacology + http://www.iuphar.org/ + 101 + + https://identifiers.org/iuphar.receptor:$1 + + + None + The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data. + Open Data Commons for Spinal Cord Injury + 602 + + false + https://identifiers.org/odc.sci:$1 + ^[0-9]*$ + + + + + https://identifiers.org/ncbigene:$1 + + 100010 + + ^\d+$ + NCBI Gene + + + + Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis. + http://www.ncbi.nlm.nih.gov/ + + false + + + chebi + true + Name-to-Thing + https://n2t.net + false + + https://n2t.net/$1:$2 + An ARK resolver as well as resolver built with common prefxies as in Identifiers.org + true + + + http://www.cropontology.org/ontology/CO_327/Pearl%20millet + helpdesk@cropontology-curationtool.org + + https://www.ebi.ac.uk/ols/ontologies/co_327/terms?iri=http://purl.obolibrary.org/obo/CO_327_$1 + false + + Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016 + Pearl millet ontology + + + Genatlas + + GenAtlas is a database containing information on human genes, markers and phenotypes. + false + HBB + None + ^\w+$ + https://identifiers.org/genatlas:$1 + + + + + + + mesh.2013 + + + + + http://www.antweb.org + casent0106247 + false + Ant Database + + AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures. + + + + https://identifiers.org/antweb:$1 + ^casent\d+(\-D\d+)?$ + + + + + + efo + + + Ontology of units of Measure + + false + https://github.com/HajoRijgersberg/OM + https://www.ebi.ac.uk/ols/ontologies/om/terms?iri=http://purl.obolibrary.org/obo/OM_$1 + + + hajo.rijgersberg@wur.nl + The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging + + + GNPIS + + + + + + None + + PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence. + false + + 2842 + + https://identifiers.org/phosphosite.residue:$1 + PhosphoSite Residue + ^\d+$ + + + + Morphological and physiological measurement records generated from clinical and model organism research and health programs. + ^\d{7}$ + + + Clinical measurement ontology + + false + https://www.ebi.ac.uk/ols/ontologies/cmo/terms?iri=http://purl.obolibrary.org/obo/CMO_$1 + + 0001350 + shimoyama@mcw.edu + http://rgd.mcw.edu/rgdweb/ontology/search.html + + + The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. + + false + http://www.disease-ontology.org + lynn.schriml@gmail.com + + Human Disease Ontology + https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo + https://identifiers.org/DOID:$1 + + + + 0110974 + + ^DOID:\d+$ + + + + + + ^\d+$ + false + + + Description of Plant Viruses + Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene. + + 100 + None + https://identifiers.org/dpv:$1 + + + false + UM-BBD Compound + + http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1 + + + + ^c\d+$ + The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information. + None + + c0001 + + + biostudies + + + + + Rouge + + + + + BIGG.REACTION + + + + + + + planttfdb + + + + EHDAA + + + + + + cath + + + false + + + + Prosite database of protein families and domains + PS00001 + + https://prosite.expasy.org/ + PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them. + https://identifiers.org/prosite:$1 + + + + ^PS\d{5}$ + + + false + Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse. + None + + + + FuncBase Mouse + 1351341 + + https://identifiers.org/funcbase.mouse:$1 + ^\d+$ + + + + csa + + + + + fix + + + + The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups. + + + ^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$ + http://www.ebi.ac.uk/GOA/ + + https://identifiers.org/goa:$1 + P12345 + Gene Ontology Annotation Database Identifier + + + false + + + + false + ^([A-H,Y]|[A-H, Y]\d{2}|[A-H, Y]\d{2}[A-Z]|[A-H, Y]\d{2}[A-Z]\d{1,3}|[A-H, Y]\d{2}[A-Z]\d{1,3}(\/)?\d{2,})$ + + + The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013. + + Cooperative Patent Classification + A01M1/026 + https://identifiers.org/cpc:$1 + None + + + https://www.ebi.ac.uk/ols/ontologies/rnao/terms?iri=http://purl.obolibrary.org/obo/RNAO_$1 + + ^\d{7}$ + 0000128 + + RNA ontology + https://github.com/bgsu-rna/rnao + + + Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures. + BatchelorC@rsc.org + false + + + + + + CHMO + + + + + + miRNEST + ^MNEST\d+$ + https://identifiers.org/mirnest:$1 + MNEST029358 + miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species. + + false + None + + + KEGG Genome + None + KEGG Genome is a collection of organisms whose genomes have been completely sequenced. + T06648 + + + + ^(T0\d+|\w{3,5})$ + false + https://identifiers.org/kegg.genome:$1 + + + + + + MONDO + + + + + + false + None + + https://identifiers.org/broad:$1 + Broad Fungal Genome Initiative + Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae. + + S7000002168151102 + ^S\d+$ + + + + PathBank + false + https://pathbank.org/view/$1 + SMP0000219 + + ^SMP\d+$ + https://pathbank.org + None + + + eggnog + + + + + + AGRO + + + + SEED.COMPOUND + + + + + + + bfo + + + BCI-O + + + + + Performance Summary Display Ontology (PSDO) (pronounced "pseudo" or "sudo") is an application ontology about charts, tables, and graphs that are used to communicate performance information to employees and teams in organizations. PSDO's domain focus is on healthcare organizations that use performance summary displays in clinical dashboards and feedback interventions for healthcare professionals and teams. The displays commonly show information about the quality of care and health outcomes that has been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is not peer-reviewed. + + false + zachll@umich.edu + + https://www.ebi.ac.uk/ols/ontologies/psdo/terms?iri=http://purl.obolibrary.org/obo/PSDO_$1 + + + https://github.com/Display-Lab/psdo + Performance Summary Display Ontology + + + false + + ^BSU\d{5}$ + + https://identifiers.org/subtiwiki:$1 + + BSU29180 + None + + SubtiWiki + SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. +Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon. + + + false + None + None + Veterans Health Administration (VHA) unique identifier + + + + + zfs + + + + https://identifiers.org/pharmgkb.drug:$1 + PharmGKB Drug + The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. + ^PA\d+$ + None + + + false + + + PA448710 + + + + ^\d+$ + None + + Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources. + false + https://identifiers.org/allergome:$1 + + + + Allergome + + 1948 + + + https://github.com/aszool/oarcs + + false + + + + https://www.ebi.ac.uk/ols/ontologies/oarcs/terms?iri=http://purl.obolibrary.org/obo/OARCS_$1 + Ontology of Arthropod Circulatory Systems + OArCS is an ontology describing the Arthropod ciruclatory system. + mjyoder@illinois.edu + + + + + pirsf + + + + + psdo + + + + None + None + Electrocardiogram Ontology + + false + + + + Database of Interacting Proteins + + false + The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions + https://identifiers.org/dip:$1 + None + + + + + ^DIP(\:)?\-\d{1,}[ENXS]$ + DIP-743N + + + false + \d+$ + + The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra. + None + 4544 + + + + Spectral Database for Organic Compounds + https://identifiers.org/sdbs:$1 + + + + EHDAA2 + + + + + + genedb + + + + ECG + + + + ^[A-Z0-9]+$ + + + COSMIC Gene + false + BRAF + https://identifiers.org/cosmic:$1 + COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes. + + None + + + + https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm + 1868 + false + https://sitem.herts.ac.uk/aeru/vsdb + None + Veterinary Substances DataBase + + + + + DDANAT + + + + SubstrateDB + The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates. + https://identifiers.org/pmap.substratedb:$1 + + 1915 + false + + + + ^\d+$ + None + + + ^\d+$ + None + false + + + 10142 + + GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank. + G-Rich Sequences Database + + https://identifiers.org/grsdb:$1 + + + + WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities. + + + ^WB[A-Z][a-z]+\d+$ + https://identifiers.org/wb:$1 + false + http://www.wormbase.org/ + + + + WBGene00000001 + WormBase database of nematode biology + + + MP + + + + + + https://identifiers.org/GO:$1 + Gene Ontology + http://geneontology.org/ + + false + 0032571 + + The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism. + + + + + http://purl.obolibrary.org/obo/go.obo + + ^GO:\d{7}$ + + + + suzia@stanford.edu + + + + PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins. + + ^\w+$ + false + + + Phy000CLXM_RAT + https://identifiers.org/phylomedb:$1 + PhylomeDB + + None + + + false + + + annethessen@gmail.com + + ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology). + Environmental conditions, treatments and exposures ontology + 0000001 + + + https://www.ebi.ac.uk/ols/ontologies/ecto/terms?iri=http://purl.obolibrary.org/obo/ECTO_$1 + ^\d{7}$ + https://github.com/EnvironmentOntology/environmental-exposure-ontology + + + https://identifiers.org/ensembl.bacteria:$1 + Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes. + ^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$ + + + None + Ensembl Bacteria + + + false + MU9_3181 + + + + PGOHUM00000289843 + false + http://www.pseudogene.org + + None + + PseudoGene + + + + + isbn + + + + http://www.imdrf.org/ + None + International Medical Device Regulators Forum + false + + + + kegg.compound + + + + false + Dengue Fever Ontology + None + + None + + + + ricenetdb.reaction + + + + + Cancer Data Standards Registry and Repository + + ^[0-9]*$ + https://identifiers.org/cadsr:$1 + 3771992 + false + None + + The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR. + + + + The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities. + + false + https://www.ebi.ac.uk/ols/ontologies/vo/terms?iri=http://purl.obolibrary.org/obo/VO_$1 + + + + http://www.violinet.org/vaccineontology + yongqunh@med.umich.edu + + Vaccine Ontology + + + None + The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks. + + + + DTXSID2021028 + https://identifiers.org/comptox:$1 + ^DTXSID\d+$ + false + + CompTox Chemistry Dashboard + + + + + + P00747__P07355 + + MatrixDB Association + ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$ + MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations. + https://identifiers.org/matrixdb.association:$1 + false + None + + + + UNIPROT.ISOFORM + + + + + + PomBase + + + afo + + + + + + OGI + + + + + PATO + + + + + Microbial Conditions Ontology is an ontology... + https://github.com/microbial-conditions-ontology/microbial-conditions-ontology + 0000858 + ^\d+$ + + citlalli.mejiaalmonte@gmail.com + Microbial Conditions Ontology + + false + https://www.ebi.ac.uk/ols/ontologies/mco/terms?iri=http://purl.obolibrary.org/obo/MCO_$1 + + + + ^[0-9]{15}[0-9X]{1}$ + 000000012281955X + false + + + None + International Standard Name Identifier + https://identifiers.org/isni:$1 + + ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC. + +The mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described. + + + + FLOPO + + + + + + false + + ^\w+$ + https://identifiers.org/trichdb:$1 + + + TVAG_386080 + TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + None + TrichDB + + + \d{4,}((_[asx])?_at)? + None + An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration. + + + https://identifiers.org/affy.probeset:$1 + false + + + 243002_at + Affymetrix Probeset + + + + MetaCyc + + + + + ms + + + + SIDER.EFFECT + + + + + AntWeb + + + + + false + + Obstetric and Neonatal Ontology + http://ontoneo.com + https://www.ebi.ac.uk/ols/ontologies/ontoneo/terms?iri=http://purl.obolibrary.org/obo/ONTONEO_$1 + + + The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby. + + fernanda.farinelli@gmail.com + + + + + + biosystems + + + + https://identifiers.org/ga4ghdos:$1 + None + ^[a-zA-Z0-9\-:#/\.]+$ + dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d + + + + Data Object Service + Assists in resolving data across cloud resources. + false + + + + false + CCDC Number + The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC. + + ^\d{6,7}$ + None + 1829126 + https://identifiers.org/ccdc:$1 + + + + None + + TreeFam + + ^\w{1,2}\d+$ + false + + TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. + TF101014 + https://identifiers.org/treefam:$1 + + + + google.patent + + + + + + https://www.ebi.ac.uk/ols/ontologies/clo/terms?iri=http://purl.obolibrary.org/obo/CLO_$1 + The Cell Line Ontology (CLO) is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns. + 0000091 + + siiraa@umich.edu + + http://www.clo-ontology.org + false + + + Cell Line Ontology + + + + + ^\d+$ + 1 + Oryzabase Strain + https://identifiers.org/oryzabase.strain:$1 + + + false + + None + Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information. + + + https://identifiers.org/BTO:$1 + + + + + ^BTO:\d{7}$ + + a.chang@tu-bs.de + + The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms. + http://www.brenda-enzymes.org + 0000590 + false + + + + BRENDA tissue / enzyme source + + + + + oryzabase.stage + + + + ^HBG\d+$ + HBG004341 + HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees. + + Homologous Vertebrate Genes Database + + false + + https://pbil.univ-lyon1.fr/databases/hovergen.php + https://identifiers.org/hovergen:$1 + + + S000002493 + + + + The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae. + false + + http://www.yeastgenome.org/ + https://identifiers.org/sgd:$1 + + ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$ + + + Saccharomyces Genome Database + + + + + + gerhard.mayer@rub.de + http://www.psidev.info/groups/controlled-vocabularies + 00050 + A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. + ^\d{5}$ + false + https://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_$1 + + + HUPO-PSI cross-linking and derivatization reagents controlled vocabulary + + + rdf + + + + + GENEPIO + + + + + None + Feature Annotation Location Description Ontology + false + ForwardStrandPosition + + http://biohackathon.org/resource/faldo + http://biohackathon.org/resource/faldo#$1 + + + + + ^PRO_[0-9]{10}$ + + + UniProt Chain + This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein. + PRO_0000016681 + false + None + https://identifiers.org/uniprot.chain:$1 + + + + ^HIX\d{7}(\.\d+)?$ + https://identifiers.org/hinv.locus:$1 + H-InvDb Locus + HIX0004394 + None + + + H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view. + false + + + + g.gkoutos@gmail.com + false + ^UO:\d{7}? + 0000080 + + + + + Units of measurement ontology + https://github.com/bio-ontology-research-group/unit-ontology + + + https://identifiers.org/UO:$1 + + Ontology of standardized units + + + An anatomical and developmental ontology for cephalopods + https://github.com/obophenotype/cephalopod-ontology + 0000109 + false + + + https://raw.githubusercontent.com/obophenotype/cephalopod-ontology/master/ceph.obo + https://www.ebi.ac.uk/ols/ontologies/ceph/terms?iri=http://purl.obolibrary.org/obo/CEPH_$1 + cjmungall@lbl.gov + + + + Cephalopod Ontology + ^\d{7}$ + + + rnamods + + + + + + + ClinVar + + + + + ndc + + + + + DIDEO + + + 4238 + + None + https://www.gbif.org/species/$1 + Global Biodiversity Information Facility + false + + None + + + + + cazy + + + GOA + + + + + EUPATH + + + + + Ontology for genetic interval + + https://www.ebi.ac.uk/ols/ontologies/ogi/terms?iri=http://purl.obolibrary.org/obo/OGI_$1 + false + + https://code.google.com/p/ontology-for-genetic-interval/ + + + + OGI formalized the genomic element by defining an upper class 'genetic interval'. + +The definition of 'genetic interval' is "the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture." + +Related paper: + +1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology) +Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf) +Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF) + + + + + + None + + Collection + Dublin Core Types + false + + https://dublincore.org/specifications/dublin-core/dcmi-terms/ + http://purl.org/dc/dcmitype/$1 + + + helpdesk@cropontology-curationtool.org + https://www.ebi.ac.uk/ols/ontologies/co_340/terms?iri=http://purl.obolibrary.org/obo/CO_340_$1 + false + + + http://www.cropontology.org/ontology/CO_340/Cowpea + Cowpea Trait Dictionary in template v5 - IITA - August 2015 + Cowpea ontology + + + + P2892 + + + + The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes. + https://identifiers.org/icd:$1 + false + + None + + + + + ^[A-Z]\d+(\.[-\d+])?$ + International Classification of Diseases + + C34 + + + false + rlwalls2008@gmail.com + + https://github.com/futres/fovt + + + + https://www.ebi.ac.uk/ols/ontologies/fovt/terms?iri=http://purl.obolibrary.org/obo/FOVT_$1 + None + FuTRES Ontology of Vertebrate Traits + + + ^FOODON:[0-9]{8}$ + + + https://foodon.org/ + + https://identifiers.org/FOODON:$1 + + FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies. + damion_dooley@sfu.ca + 03307879 + The Food Ontology + + false + + + + + A0014 + + Annotated Regulatory Binding Sites + None + + The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography. + + ^A\d+$ + + false + https://identifiers.org/abs:$1 + + + ito + + + + + + amoebadb + + + + ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$ + + false + None + + + + APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier. + https://identifiers.org/apid.interactions:$1 + APID Interactomes + + P01116 + + + https://identifiers.org/scretf:$1 + + RSC3 + ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor. + + false + None + + + ^\w+$ + ScerTF + + + false + + + + + None + https://identifiers.org/yeastintron:$1 + ^[A-Z0-9]+$ + Yeast Intron Database v4.3 + SNR17A + The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]. + + + FB-DV + + + + + UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds. + UPC04349 + + + false + None + UniPathway Compound + + ^UPC\d{5}$ + + https://identifiers.org/unipathway.compound:$1 + + + + lei + + + + http://www.atol-ontology.com + ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production. + + https://www.ebi.ac.uk/ols/ontologies/atol/terms?iri=http://purl.obolibrary.org/obo/ATOL_$1 + false + Animal Trait Ontology for Livestock + pylebail@rennes.inra.fr + + + + + NCIM + + + + + ECOCORE + + + + + + + ^did:[a-z0-9]+:[A-Za-z0-9.\-:]+$ + DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary. + Decentralized Identifier + sov:WRfXPg8dantKVubE3HX8pw + https://identifiers.org/DID:$1 + false + None + + + + The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception. + + + Software Package Data Exchange License + false + https://spdx.org/licenses + https://identifiers.org/spdx:$1 + + ^[0-9A-Za-z\-.]+$ + CC-BY-1.0 + + + GR_tax:013681 + + + Gramene Taxonomy + ^GR\_tax\:\d+$ + Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene. + false + https://identifiers.org/gramene.taxonomy:$1 + None + + + + + + false + CiteXplore + None + https://europepmc.org/article/CTX/$1 + C6155 + + None + + + Wheat ontology + http://www.cropontology.org/ontology/CO_321/Wheat + https://www.ebi.ac.uk/ols/ontologies/co_321/terms?iri=http://purl.obolibrary.org/obo/CO_321_$1 + false + + Sept 2020 + + helpdesk@cropontology-curationtool.org + + + + + P665 + + + + Intelligence Task Ontology + https://identifiers.org/ito:$1 + ITO_01625 + ^.+$ + false + None + + The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks. + + + + false + None + None + + Kidney and Urinary Pathway Ontology + + + + + MONDO + + + KEGG.DISEASE + + + + + + + lipidmaps + + + + + knapsack + + + + gpcrdb + + + + + + EPD + + + + BDGP.INSERTION + + + + ^(D|PP|R|T|H|X|AI)?\d+$ + https://identifiers.org/uspto:$1 + false + None + + + The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement. + 4145692 + + United States Patent and Trademark Office + + + + + MAXO + + + + + + ordb + + + + isni + + + + doqcs.model + + + + + bitterdb.rec + + + + + + + antibodyregistry + + + + P7333 + + + + 0807.4956v1 + + arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology. + ^(\w+(\-\w+)?(\.\w+)?)?\d{4,7}(\.\d+(v\d+)?)?$ + https://identifiers.org/arxiv:$1 + + false + + + arXiv + None + + + + + mgnify.samp + + + + + TAIR + + + + + P3DB.SITE + + + + + FAIRsharing.8t18te + + + + + Chemical Entities of Biological Interest + + + Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds. + http://www.ebi.ac.uk/chebi + false + + ^CHEBI:\d+$ + + 24867 + amalik@ebi.ac.uk + + https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1 + + + + + + ^\d+$ + false + + + 25011 + https://identifiers.org/maizegdb.locus:$1 + MaizeGDB is the maize research community's central repository for genetics and genomics information. + + + MaizeGDB Locus + https://www.maizegdb.org/ + + + + + ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ + false + None + Protein Interaction Network Analysis + + Q13485 + https://identifiers.org/pina:$1 + + Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. + + + + + PW + + + + + one + + + + FPLX + + + + ^((HGNC|hgnc):)?\d{1,5}$ + http://www.genenames.org + + https://identifiers.org/hgnc:$1 + + + + + + false + + 16793 + + HUGO Gene Nomenclature Committee + + The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database. + + + + GWAS Central Study + + https://identifiers.org/gwascentral.study:$1 + ^HGVST\d+$ + https://www.gwascentral.org/studies + false + + + HGVST1828 + GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study. + + + http://www.cropontology.org/ontology/CO_337/Groundnut + Groundnut ontology + helpdesk@cropontology-curationtool.org + https://www.ebi.ac.uk/ols/ontologies/co_337/terms?iri=http://purl.obolibrary.org/obo/CO_337_$1 + + false + + Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS/USDA-ARS - Sept 2019 + + + + + APOLLO_SV + + + + HWUPKR0MPOU8FGXBT394 + None + Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland. + + ^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$ + + https://identifiers.org/lei:$1 + Global LEI Index + false + + + https://identifiers.org/sider.drug:$1 + SIDER Drug + ^\d+$ + + None + + SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER. + + false + + 2244 + + + + Physico-chemical process + https://www.ebi.ac.uk/ols/ontologies/rex/terms?iri=http://purl.obolibrary.org/obo/REX_$1 + http://purl.obolibrary.org/obo/rex.owl + false + None + + + An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. + + + + + https://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1 + false + http://braininfo.rprc.washington.edu/ + + None + 268 + NeuroNames + + + sheeba.samuel@uni-jena.de + https://www.ebi.ac.uk/ols/ontologies/reproduceme/terms?iri=http://purl.obolibrary.org/obo/REPRODUCEME_$1 + + REPRODUCE-ME Ontology + + false + https://w3id.org/reproduceme/research + + The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility. + + + smpdb + + + + + + false + The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world. + + ^[A-Z]{2}\d+$ + https://identifiers.org/coriell:$1 + GM17027 + + + http://ccr.coriell.org/ + + Coriell Institute for Medical Research + + + iceberg.element + + + + + + RETO + + + + https://github.com/Planteome/plant-stress-ontology + false + + Plant Stress Ontology + + + https://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_$1 + The Plant Stress Ontology describes... + + cooperl@science.oregonstate.edu + + + Progenetix + https://identifiers.org/pgx:$1 + + ^\w{3,15}[-_]\w[\w.-]{3,128}$ + + + false + + pgxbs-kftva5zv + The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt "neoplasm" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs. + None + + + + + gabi + + + + + dragondb.locus + + + + mobidb + + + + + + BIOMD + + + The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web. + + + Virtual International Authority File + None + + 75121530 + https://identifiers.org/viaf:$1 + ^\d+$ + false + + + None + false + + + + OriDB Saccharomyces + + https://identifiers.org/oridb.sacch:$1 + 1 + OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae. + ^\d+$ + + + ^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$ + + + X58356 + + Nucleotide Sequence Database + The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. + false + https://identifiers.org/insdc:$1 + + None + + + PicTar + https://pictar.mdc-berlin.de/ + + hsa-let-7a + None + true + + + gxa.expt + + + + + + Sickle Cell Disease Ontology + An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease. + https://www.ebi.ac.uk/ols/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_$1 + giant.plankton@gmail.com + + + https://scdontology.h3abionet.org/ + false + + + + https://identifiers.org/ordb:$1 + The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs). + + Olfactory Receptor Database + 8497 + + ^\d+$ + false + None + + + + + MFOMD + + + + + ^\d{7}$ + Platynereis Developmental Stages + false + + https://www.ebi.ac.uk/ols/ontologies/pdumdv/terms?iri=http://purl.obolibrary.org/obo/PDUMDV_$1 + + + https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv + 0001410 + bgee@sib.swiss + + + Life cycle stages for Platynereis dumerilii + + + https://www.ebi.ac.uk/ols/ontologies/co_357/terms?iri=http://purl.obolibrary.org/obo/CO_357_$1 + Woody Plant Ontology ontology + helpdesk@cropontology-curationtool.org + http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology + This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE. + + + false + + + + SO + + + + + OHMI + + + + + + foaf + + + + uspto + + + + http://www.xenbase.org/ + + + https://identifiers.org/xenbase:$1 + Xenbase + + + + false + + Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions. + + XB-GENE-922462 + ^XB\-\w+\-\d+$ + + + + bao + + + + https://go.drugbank.com/salts/$1 + None + DBSALT001211 + + ^DBSALT\d{6}$ + DrugBank Salts + false + + + http://www.drugbank.ca + + + BacMap Map + + BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information. + + None + false + ^\w+(\_)?\d+(\.\d+)?$ + https://identifiers.org/bacmap.map:$1 + + + AP011135 + + + + + WormBase + + + gpmdb + + + + + https://www.w3.org/ns/prov + + + https://www.w3.org/ns/prov#$1 + + None + false + PROV Namespace + Activity + + + + + + ogsf + + + + + ONE + + + + + PORO + + + None + https://identifiers.org/aftol.taxonomy:$1 + + + + ^\d+$ + 959 + The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species. + Assembling the Fungal Tree of Life - Taxonomy + + false + + + 75 + SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information. + https://identifiers.org/sabiork.reaction:$1 + + + ^\d+$ + false + None + + SABIO-RK Reaction + + + + + http://agricola.nal.usda.gov/ + false + Agricultural Online Access + https://identifiers.org/agricola:$1 + + + + 50018 + ^\d+$ + AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century. + + + + pato + + + + + ^MAMO_\d{7}$ + n.lenovere@gmail.com + http://sourceforge.net/p/mamo-ontology/wiki/Home/ + false + + + Mathematical modeling ontology + + + The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features. + https://identifiers.org/mamo:$1 + + + MAMO_0000026 + + + + + + WB-LS + + + + + planttfdb + + + + fungidb + + + + The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles. + lynn.schriml@gmail.com + Pathogen Transmission Ontology + + + + https://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_$1 + https://github.com/DiseaseOntology/PathogenTransmissionOntology + false + + + ^\d{7}$ + 0000024 + + + + OPM + + + + + cattleqtldb + + + + + CTO + + + + + co_331 + + + + + C063233 + + + false + https://identifiers.org/mesh:$1 + ^(C|D)\d{6,9}$ + https://www.wikidata.org/wiki/Q6589563 + + Medical Subject Headings + MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc. + + + + + + CCO + + + + + + http://www.cropontology.org/ontology/CO_359/Sunflower + December 2019 + https://www.ebi.ac.uk/ols/ontologies/co_359/terms?iri=http://purl.obolibrary.org/obo/CO_359_$1 + helpdesk@cropontology-curationtool.org + Sunflower ontology + + false + + + + E-cyanobacterium Experimental Data + https://identifiers.org/ecyano.experiment:$1 + + 18 + E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments. + ^\d+$ + false + None + + + + + OGG + + + + pfey@northwestern.edu + false + Dictyostelium discoideum phenotype ontology + https://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_$1 + https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo + A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum. + ^\d{7}$ + + + 0001417 + + + http://dictybase.org/ + + + + + Integrated Microbial Genomes Gene + + https://identifiers.org/img.gene:$1 + 638309541 + The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information. + ^\d+$ + false + None + + + + + https://identifiers.org/chickenqtldb:$1 + Animal Genome Chicken QTL + None + + 14362 + + The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs. + + ^\d+$ + false + + + + + vipr + + + + + echobase + + + + neurovault.collection + + + + + https://github.com/phenoscape/taxrank + https://www.ebi.ac.uk/ols/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_$1 + Taxonomic rank vocabulary + + balhoff@renci.org + + + A vocabulary of taxonomic ranks (species, family, phylum, etc) + false + 0000001 + + ^\d{7}$ + + + + + PSO + + + + + + https://github.com/DIDEO/DIDEO + + The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology + false + + Drug-drug Interaction and Drug-drug Interaction Evidence Ontology + mbrochhausen@gmail.com + + https://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_$1 + + + + false + None + ^\w+$ + DragonDB Locus + https://identifiers.org/dragondb.locus:$1 + + + + + DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information. + DEF + + + https://identifiers.org/rfam:$1 + + false + + ^RF\d{5}$ + https://rfam.org + + + + + Rfam database of RNA families + The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion. + RF00230 + + + + VHOG + + + + + + dlxc + + + + CQG5 + https://identifiers.org/gramene.qtl:$1 + + + + false + Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene. + + http://www.gramene.org/ + Gramene QTL + ^\w+$ + + + + FB-CV + + + + KISAO + + + + + Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record. + https://identifiers.org/compulyeast:$1 + + O08709 + false + + None + + + Compluyeast-2D-DB + ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ + + + + DIDEO + + + + + + hmdb + + + + + KEGG.GLYCAN + + + YETFASCO + + + + + http://www.psidev.info/groups/controlled-vocabularies + https://www.ebi.ac.uk/ols/ontologies/xl/terms?iri=http://purl.obolibrary.org/obo/XL_$1 + false + Cross-linker reagents ontology + + + psidev-ms-vocab@lists.sourceforge.net + + A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. + + + ecogene + + + + + https://bioportal.bioontology.org/ + true + https://bioportal.bioontology.org/ontologies/$1 + + The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry + BioPortal Prefixes + true + false + CHEBI + + + + + xsd + + + CLO + + + + + + + jaxmice + + + taxon + + + + + + + lincs.protein + + + GOLD metadata + false + Gm00047 + + ^Gm\d+$ + + https://identifiers.org/gold.meta:$1 + + None + - DEPRECATION NOTE - +Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. + +The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples. + + + + DisProt + + + + + + CHARPROT + + + + + false + Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay. + SM_UB-81 + + + ^[A-Za-z-0-9_]+$ + + Wikipedia + http://en.wikipedia.org/ + + https://identifiers.org/wikipedia.en:$1 + + + + + HGNC + + + + + MGI + + + + rbk + + + + P10636 + + ^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$ + + + + http://mobidb.bio.unipd.it + false + MobiDB + MobiDB is a database of protein disorder and mobility annotations. + https://identifiers.org/mobidb:$1 + + + + UMBBD.PATHWAY + + + + + None + false + + + None + Human Dermatological Disease Ontology + + + + + bgee.gene + + + Ontology of Vaccine Adverse Events + yongqunh@med.umich.edu + false + + + + + OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). + http://www.violinet.org/ovae/ + + https://www.ebi.ac.uk/ols/ontologies/ovae/terms?iri=http://purl.obolibrary.org/obo/OVAE_$1 + + + The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands. + ^[A-Za-z]+\/[0-9]+$ + + SugarBind + + + lectins/172 + false + https://identifiers.org/sugarbind:$1 + None + + + + Insect Resistance Ontology + None + 0000008 + + true + None + https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1 + + + + + https://identifiers.org/psipar:$1 + + ^PAR:\d+$ + None + PAR:0116 + Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms. + + Protein Affinity Reagents + false + + + + + vbase2 + + + bdgp.est + + + + + GUDMAP + + + + + The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database. + + + + + DrugBank Target v4 + + ^BE\d{7}$ + BE0000048 + false + None + https://identifiers.org/drugbankv4.target:$1 + + + + https://identifiers.org/occ:$1 + + OpenCitations Corpus + ^[a-z][a-z]/[0-9]+$ + The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law. + + false + None + br/1 + + + + + + The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors. + druzinsk@uic.edu + false + https://github.com/rdruzinsky/feedontology + Mammalian Feeding Muscle Ontology + + + https://www.ebi.ac.uk/ols/ontologies/mfmo/terms?iri=http://purl.obolibrary.org/obo/MFMO_$1 + + + + + OGMS + + + + + HsapDv + + + mgnify.proj + + + + + Statistical Torsional Angles Potentials + None + + + STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB). + 1a24 + https://identifiers.org/stap:$1 + + + ^[0-9][A-Za-z0-9]{3}$ + false + + + + + proglyc + + + + + None + GOLD genome + Gi07796 + + https://identifiers.org/gold.genome:$1 + false + ^(Gi|Gc)\d+$ + + - DEPRECATION NOTE - +Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. + +The GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes. + + + + + bugbase.expt + + + + + CHEBI + + + WB.RNAI + + + + + ECOLIWIKI + + + + + + + UniProtKB-SubCell + + + gabi + + + + + + ^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$ + The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access. + + None + false + Health Data Research Innovation Gateway + fd8d0743-344a-4758-bb97-f8ad84a37357 + https://identifiers.org/gateway:$1 + + + None + https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.obo + false + + + http://www.geneontology.org/formats/oboInOwl#$1 + DbXref + OBO in OWL + https://github.com/geneontology/go-ontology/tree/master/contrib + + + + + treebase + + + Alzforum Mutations + app-d678n-tottori + false + None + + https://www.alzforum.org/mutations/$1 + None + + + + CELLIMAGE + + + + + + yrcpdr + + + johnbeverley2021@u.northwestern.edu + https://www.ebi.ac.uk/ols/ontologies/vido/terms?iri=http://purl.obolibrary.org/obo/VIDO_$1 + The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc. + false + The Virus Infectious Disease Ontology + + https://github.com/infectious-disease-ontology-extensions/ido-virus + + + + + + + OOSTT + + + false + None + KEGG Compound + + + ^C\d+$ + + + + KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life. + C12345 + https://identifiers.org/kegg.compound:$1 + + + + + P2926 + + + + + MI\d{7} + + http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1 + MI0026471 + + http://www.mirbase.org/ + false + + + The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). + miRNA Database + + + + + + gramene.qtl + + + + + GWASCENTRAL.STUDY + + + + + + + + + + + + Resources used in the semantic web, based on https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml. + + Semantic Web Context + + + + + + + + + + + + hmdb + + + + pride.project + + + + + gold.genome + + + + + OSR0818 + false + None + RiceNetDB Reaction + + ^OSR\d{4}$ + + https://identifiers.org/ricenetdb.reaction:$1 + RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. + + + + + + genpept + + + OHMI + + + + + + + multicellds.collection + + + + + elm + + + + uniparc + + + + rgd.strain + + + + + molmedb + + + + + TTD Drug + The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target. + https://identifiers.org/ttd.drug:$1 + + + + false + None + DAP000773 + + ^DAP\d+$ + + + + otl + + + + + + PDB-CCD + + + + pass2 + + + + https://www.ebi.ac.uk/ols/ontologies/mro/terms?iri=http://purl.obolibrary.org/obo/MRO_$1 + + https://github.com/IEDB/MRO + MHC Restriction Ontology + 0000634 + bpeters@lji.org + + The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions. + + false + + + + + + IMGT_LIGM + + + + + + iuphar.ligand + + + + PDB + + + + + + pdb.ligand + + + + + ^\d+$ + 1000000 + false + + https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe + NCBI Probe database Public registry of nucleic acid reagents + The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities. + https://identifiers.org/dbprobe:$1 + + + + + + + nmrcv + + + GRAMENE.GENE + + + + + + miriam.collection + + + + + + WD_Entity + + + + + MESH.2012 + + + https://www.nescent.org/phenoscape/Main_Page + wasila.dahdul@usd.edu + + None + + + + Vertebrate Skeletal Anatomy Ontology + true + + + InterPro + + + + + + + eggnog + + + + CIDO + + + + + NCATS Drugs + None + https://drugs.ncats.io/ + 44259 + https://drugs.ncats.io/drug/$1 + false + + + + hpm.peptide + + + + + + None + + false + + ^phs[0-9]{6}(.v\d+.p\d+)?$ + Database of Genotypes and Phenotypes + The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype. + https://identifiers.org/dbgap:$1 + phs000768.v2.p1 + + + diapriid@gmail.com + false + + + + + NOMEN - A nomenclatural ontology for biological names + https://www.ebi.ac.uk/ols/ontologies/nomen/terms?iri=http://purl.obolibrary.org/obo/NOMEN_$1 + NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature. + https://github.com/SpeciesFileGroup/nomen + + + + hpm.protein + + + + false + + + Gramene Growth Stage Ontology + http://www.gramene.org/db/ontology/search?id=GRO:$1 + 0007133 + + None + + Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene. + ^\d{7}$ + + + + + RNAcentral + + + + CL + + + + Hepatitis C Virus Database + + + http://euhcvdb.ibcp.fr + M58335 + + ^M\d{5}$ + https://identifiers.org/hcvdb:$1 + the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses. + + false + + + + + drsc + + + metabolights + + + + + BGEE.ORGAN + + + + + + + false + + + https://identifiers.org/funcbase.yeast:$1 + FuncBase Yeast + Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast. + ^\d+$ + 2701 + None + + + OMO + + + + + + + HAMAP + + + http://eawag-bbd.ethz.ch/ + + The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information. + r0001 + + + EAWAG Biocatalysis/Biodegradation Database + + ^r\d+$ + http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1 + + false + + + false + http://dictybase.org/ + + pfey@northwestern.edu + https://www.ebi.ac.uk/ols/ontologies/ddanat/terms?iri=http://purl.obolibrary.org/obo/DDANAT_$1 + ^\d{7}$ + + + 0000006 + A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum + + + + Dictyostelium discoideum anatomy + + + PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation. + + Phenotype And Trait Ontology + false + https://github.com/pato-ontology/pato/ + + 0001998 + + + + g.gkoutos@gmail.com + + + ^PATO:\d{7}$ + + https://identifiers.org/PATO:$1 + + + + + ^[A-Za-z_0-9]+$ + false + None + + https://identifiers.org/aspgd.protein:$1 + ASPL0000349247 + AspGD Protein + + The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information. + + + + + false + An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. + ^\d{7}$ + https://www.ebi.ac.uk/ols/ontologies/idomal/terms?iri=http://purl.obolibrary.org/obo/IDOMAL_$1 + topalis@imbb.forth.gr + + + Malaria Ontology + 0002350 + + http://purl.obolibrary.org/obo/idomal.obo + https://www.vectorbase.org/ontology-browser + + + false + + + + https://identifiers.org/hpa:$1 + http://www.proteinatlas.org/ + Human Protein Atlas tissue profile information + ^ENSG\d{11}$ + The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers. + + ENSG00000026508 + + + + + unipathway.reaction + + + + + + GR_PROTEIN + + + + + ensembl.protist + + + + None + https://identifiers.org/gmd:$1 + + Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena. + + Golm Metabolome Database + false + + + 68513255-fc44-4041-bc4b-4fd2fae7541d + ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + + + + unists + + + + + C0004828 + https://identifiers.org/classyfire:$1 + + ClassyFire + ^C[0-9]{7}$ + false + ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API. + None + + + yetfasco + + + + + + + + + + + + + + + Resources mentioned in "Sharing biological data: why, when, and how" + + + + + These resources were listed in "Sharing biological data: why, when, and how", which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible. + + + + + + + + + + + https://identifiers.org/bykdb:$1 + A0A009E7X8 + + Bacterial Tyrosine Kinase Database + The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information. + false + None + ^[A-Z0-9]+$ + + + + 377550 + https://identifiers.org/noncodev3:$1 + ^\d+$ + false + + + NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4. + + None + + NONCODE v3 + + + KEGG_LIGAND + + + + + + + biostudies + + + STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons. + false + + Store DB + + ^STOREDB:(STUDY|FILE|DATASET)\d+$ + STOREDB:STUDY1040 + https://identifiers.org/storedb:$1 + + None + + + + + + + None + false + AICARTRANSIMPCYCLO-CPLX + EcoCyc + http://ecocyc.org/ + https://biocyc.org/gene?id=$1 + + + + + peptideatlas + + + glida.gpcr + + + + + None + https://www.biorxiv.org/ + false + bioRxiv + + + + + + false + None + + SABIO-RK Compound + 75 + SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information. + + ^\d+$ + https://identifiers.org/sabiork.compound:$1 + + + https://identifiers.org/giardiadb:$1 + GiardiaDB + + GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + None + + false + ^\w+$ + + + GL50803_102438 + + + + mamo + + + + + + PHARMGKB.PATHWAYS + + + Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables + helpdesk@cropontology-curationtool.org + https://www.ebi.ac.uk/ols/ontologies/co_320/terms?iri=http://purl.obolibrary.org/obo/CO_320_$1 + + false + + Rice ontology + http://www.cropontology.org/ontology/CO_320/Rice + + + https://www.pombase.org/ + https://identifiers.org/pombase:$1 + + + SPCC13B11.01 + + + PomBase + false + + PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets. + + + ^S\w+(\.)?\w+(\.)?$ + + + + None + https://identifiers.org/funcbase.fly:$1 + Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data. + 10194 + + ^\d+$ + false + + + FuncBase Fly + + + + + + OA + + + None + https://publons.com/researcher/$1 + + Publons Researcher ID + false + None + + + + Mendelian Inheritance in Man + + + + + Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders. + + 603903 + + false + + ^[*#+%^]?\d{6}$ + https://omim.org/ + + + https://identifiers.org/mim:$1 + + + + co_357 + + + + + ohd + + + + rgd + + + + + + https://github.com/jannahastings/emotion-ontology + janna.hastings@gmail.com + + + + false + + An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings. + https://www.ebi.ac.uk/ols/ontologies/mfoem/terms?iri=http://purl.obolibrary.org/obo/MFOEM_$1 + Emotion Ontology + + + + + ZFA + + + + gtex + + + + + miapa + + + + PHARMGKB.DISEASE + + + + + ird.segment + + + + + + proteomicsdb.peptide + + + + NBO + + + + + + + hpm.protein + + + ^(MNXR\d+|EMPTY)$ + https://identifiers.org/metanetx.reaction:$1 + MetaNetX reaction + + false + None + + MNXR101574 + + + MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions. + + + 002804 + + None + + + + MedlinePlus Health Topics + ^\d+$ + false + MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language. + https://identifiers.org/medlineplus:$1 + + + + false + + + jiezheng@pennmedicine.upenn.edu + https://github.com/biobanking/biobanking + The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology. + https://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_$1 + Ontology for Biobanking + + + + + + 5HT3Arano + false + None + + https://identifiers.org/lgic:$1 + + The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available. + ^\w+$ + + + Ligand-Gated Ion Channel database + + + ricegap + + + + + + + Ensembl + + + + + ORYZABASE.MUTANT + + + dailymed + + + + + https://identifiers.org/apd:$1 + Antimicrobial Peptide Database + + ^\d{5}$ + false + The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides. + 01001 + + None + + + + + 0000485 + + https://identifiers.org/SBO:$1 + ^SBO:\d{7}$ + false + Systems Biology Ontology + + + sheriff@ebi.ac.uk + http://www.ebi.ac.uk/sbo/ + + + The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort. + + + + + + + bigg.compartment + + + napdi + + + + + false + None + + + + The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex). + NeuroLex + ^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\d+$ + + Birnlex_721 + https://identifiers.org/neurolex:$1 + + + Database of small human noncoding RNAs + + hsa-mir-200a + https://identifiers.org/dashr:$1 + ^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$ + false + None + + DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records. + + + + + + + cubedb + + + ^\d+$ + 146421 + World Register of Marine Species + https://identifiers.org/worms:$1 + + The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts. + false + + + + None + + + https://identifiers.org/intact:$1 + EBI-2307691 + + + IntAct protein interaction database + IntAct provides a freely available, open source database system and analysis tools for protein interaction data. + false + ^EBI\-[0-9]+$ + + + https://www.ebi.ac.uk/intact/ + + + + + + + MI + + + None + ^[A-Za-z0-9]+$ + + AY109603 + https://identifiers.org/gnpis:$1 + false + + GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. + + + GnpIS + + + + + FBbi + + + + + srao + + + ^\d{7}$ + Measurement method ontology + + false + https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000 + https://www.ebi.ac.uk/ols/ontologies/mmo/terms?iri=http://purl.obolibrary.org/obo/MMO_$1 + + 0000574 + + + jrsmith@mcw.edu + + A representation of the variety of methods used to make clinical and phenotype measurements. + + + false + + The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes. + Cell Image Library + https://identifiers.org/cellimage:$1 + 24801 + + + + ^\d+$ + None + + + + + EV + + + + https://www.ebi.ac.uk/ols/ontologies/co_325/terms?iri=http://purl.obolibrary.org/obo/CO_325_$1 + Banana ontology + http://www.cropontology.org/ontology/CO_325/Banana + Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019 + false + + + helpdesk@cropontology-curationtool.org + + + KEGG LIGAND + false + + + http://www.genome.ad.jp/kegg/docs/upd_ligand.html + None + + + + 17:41223048 + + + ^[0-9]+:[0-9]+$ + false + + The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies. + + https://identifiers.org/sisu:$1 + None + Sequencing Initiative Suomi + + + + ^\w+$ + SWISS-MODEL Repository + https://identifiers.org/swiss-model:$1 + false + P23298 + + + + The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences. + None + + + + MFMO + + + + + + P235 + + + + + FLYBASE + + + uniprot + + + + + rs + + + + + http://www.genenames.org + 2029 + ^\d+$ + + https://identifiers.org/hgnc.genefamily:$1 + HGNC gene family + false + + + The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families. + + + + None + 19803 + The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs. + false + + + + https://identifiers.org/sheepqtldb:$1 + + Animal Genome Sheep QTL + ^\d+$ + + + Aclame + + ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons. + None + https://identifiers.org/MGE:$1 + ^mge:\d+$ + 2 + + false + + + + + + D1ID + + + metanetx.reaction + + + + + + + + ^\d+$ + false + None + https://identifiers.org/ctd.gene:$1 + 101 + CTD Gene + + + + The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. + + + rateRule + + + ^[A-Za-z]+$ + SBML RDF Vocabulary + false + Vocabulary used in the RDF representation of SBML models. + + + https://identifiers.org/biomodels.vocabulary:$1 + None + + + + resid + + + + + PIRSF + + + + + PHOSPHOPOINT.PROTEIN + + + + + FYPO + + + + + vario + + + + MMP.DB + + + + + + + gramene.growthstage + + + None + + 0045310 + The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins. + Transcription Factor Database + + ^\d+$ + false + https://identifiers.org/dbd:$1 + + + + + + DRON + + + + + ccds + + + + + ASCL + + + + + https://identifiers.org/microsporidia:$1 + MicrosporidiaDB + + + + false + MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + None + ECU03_0820i + ^\w+$ + + + ANTIBODYREGISTRY + + + + + http://www.genome.jp/dbget-bin/www_bfind?enzyme + + + None + false + + + KEGG Enzyme + + + tritrypdb + + + + + + + + ^Y[A-Z]{2}\d+[CW]$ + https://identifiers.org/ydpm:$1 + false + + Yeast Deletion and the Mitochondrial Proteomics Project + The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition. + None + YAL001C + + + ^\d{7}$ + Ascomycete phenotype ontology + + + stacia@stanford.edu + 0000184 + + https://www.yeastgenome.org/observable/APO:$1 + A structured controlled vocabulary for the phenotypes of Ascomycete fungi + false + http://www.yeastgenome.org/ + + + + + ftp://ftp.bgee.org/general/ontologies/HOG.obo + false + None + Homologous Organ Groups + + 0000255 + None + + + The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers. + https://identifiers.org/pmp:$1 + + Q0VCA6 + false + None + Protein Model Portal + + + ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ + + + + topalis@imbb.forth.gr + + false + https://www.ebi.ac.uk/ols/ontologies/tgma/terms?iri=http://purl.obolibrary.org/obo/TGMA_$1 + + Mosquito gross anatomy ontology + + https://www.vectorbase.org/ontology-browser + 0000984 + + + ^\d{7}$ + A structured controlled vocabulary of the anatomy of mosquitoes. + http://purl.obolibrary.org/obo/tgma.obo + + + + + PlasmoDB Plasmodium Genome Resource + false + ^\w+$ + https://identifiers.org/plasmodb:$1 + http://plasmodb.org/ + + AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + + + + PF11_0344 + + + + FB-BT + + + + ViPR + + + + + None + false + None + + Protein Data Bank in Europe + + + biomodels.db + + + + + ^GPST[0-9]{6}$ + https://identifiers.org/glycopost:$1 + GPST000024 + false + None + + + GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their "raw/processed" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines. + GlycoPOST + + + + kegg.pathway + + + + Orphanet + + + + + https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http://purl.obolibrary.org/obo/AMPHX_$1 + https://github.com/EBISPOT/amphx_ontology + false + An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum). + + + + + hescriva@obs-banyuls.fr + The Amphioxus Development and Anatomy Ontology + + + + + ^\d{1,2}\-\d+\-[GATC]\-[GATC]$ + + 22-46615880-T-C + None + false + + https://identifiers.org/exac.variant:$1 + ExAC Variant + The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information. + + + + + OPL + + + + + SMART + + + gmd.ref + + + + + http://www.cropontology.org/ontology/CO_341/Pigeonpea + false + + helpdesk@cropontology-curationtool.org + https://www.ebi.ac.uk/ols/ontologies/co_341/terms?iri=http://purl.obolibrary.org/obo/CO_341_$1 + + Pigeonpea ontology + Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015 + + + AAO + + + + + + https://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_$1 + + stoeckrt@pennmedicine.upenn.edu + The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available. + VEuPathDB ontology + + + false + https://github.com/VEuPathDB-ontology/VEuPathDB-ontology + + + + + + ResearchID + + + 5fde96bdc5f1aa9ff0cce18a + runBioSimulations + runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive. + false + + [0-9a-z]{24,24} + + https://identifiers.org/runbiosimulations:$1 + None + + + + fovt + + + + tigrfam + + + + + + AEO + + + + + The coding sequence or protein identifiers as maintained in INSDC. + None + + + ^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$ + INSDC CDS + AAA35559 + false + https://identifiers.org/insdc.cds:$1 + + + + metacyc.compound + + + + + CVDO + + + + + psidev-ms-vocab@lists.sourceforge.net + https://identifiers.org/unimod:$1 + false + Unimod protein modification database for mass spectrometry + + ^\d+$ + http://www.unimod.org/ + + 1200 + + + Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide). + + + + JWS + + + + + + + jcsd + + + + METACYC.COMPOUND + + + + SAMEA2397676 + None + BioSample + https://identifiers.org/biosample:$1 + + + The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation. + ^SAM[NED](\w)?\d+$ + + + false + + + co_346 + + + + + + MEDLINEPLUS + + + + + + paxdb.protein + + + None + + + + ^\d+$ + false + ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds. + ChemDB + + https://identifiers.org/chemdb:$1 + 3966782 + + + DRAGONDB.ALLELE + + + + + + + P2115 + + + + upa + + + + ISFINDER + + + + + + toxoplasma + + + + + Universal Natural Products Database + http://pkuxxj.pku.edu.cn/UNPD/ + None + false + + + + cmo + + + + + + co_340 + + + olatdv + + + + + The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families. + false + + http://www.pantherdb.org/ + + + + Protein ANalysis THrough Evolutionary Relationships Classification System + + PTHR12345 + https://identifiers.org/panther.family:$1 + ^PTHR\d{5}(\:SF\d{1,3})?$ + + + The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature. + + + ^\d+$ + http://cgsc.biology.yale.edu/ + Coli Genetic Stock Center + 74 + + + https://identifiers.org/cgsc:$1 + + false + + + + + false + + + The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications. + + + 01467 + Protein modification + pierre-alain.binz@chuv.ch + http://www.psidev.info/MOD + + ^MOD:\d{5} + https://identifiers.org/MOD:$1 + + + + + + DASHR.EXPRESSION + + + https://identifiers.org/bindingdb:$1 + + + ^\w\d+$ + e999 + BindingDB is the first public database of protein-small molecule affinity data. + + + BindingDB + + false + None + + + + + topfind + + + + IDEAL + + + + https://identifiers.org/icdc:$1 + Integrated Canine Data Commons + + false + None + The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer. + + ^ICDC[0-9][0-9][0-9][0-9][0-9][0-9]$ + ICDC000101 + + + false + + + + https://www.ebi.ac.uk/ols/ontologies/hancestro/terms?iri=http://purl.obolibrary.org/obo/HANCESTRO_$1 + danielle.welter@uni.lu + Human ancestry ontology for the NHGRI GWAS Catalog + https://github.com/EBISPOT/ancestro + Human Ancestry Ontology + + + + + + clao + + + + + + EOL + + + + + dbsnp + + + + + METANETX.REACTION + + + http://caps.ncbs.res.in/pass2 + The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity. + ^\d+$ + + + https://identifiers.org/pass2:$1 + true + + PASS2 + 46977 + + + + + nbrc + + + + GOREL + + + + + + + disprot + + + https://identifiers.org/envipath:$1 + false + ^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$ + enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products. + enviPath + 32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea + + None + + + + FooDB Compound + + + FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds. + https://identifiers.org/foodb.compound:$1 + FDB002100 + https://foodb.ca/ + + ^FDB\d+$ + false + + + + + + https://identifiers.org/lrg:$1 + LRG_1 + A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI. + + false + None + ^LRG_\d+$ + + Locus Reference Genomic + + + + + P493 + + + + ino + + + + + caro + + + + + + TO + + + + GPCRDB + + + + + + http://www.ebi.ac.uk/interpro/ + + + + InterPro database of protein domains and motifs + + + + + false + ^IPR\d{6}$ + InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences. + https://identifiers.org/interpro:$1 + + IPR016380 + + + + + + ^PASS\d{5}$ + PeptideAtlas Dataset + None + PASS01237 + https://identifiers.org/peptideatlas.dataset:$1 + Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas. + false + + + + MOBIDB + + + + + + begdb + + + + + OMIT + + + false + None + H-InvDb Protein + + + + + https://identifiers.org/hinv.protein:$1 + HIP000030660 + H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view. + ^HIP\d{9}(\.\d+)?$ + + + + + corum + + + None + false + + ClinVar Record + + https://identifiers.org/clinvar.record:$1 + ^RCV\d+(\.\d+)?$ + RCV000033555.3 + + + ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession. + + + + + SGN + + + HGNC + + + + + + ms + + + + gwascentral.marker + + + + + P486 + + + + + + + KEGG.COMPOUND + + + + + DDANAT + + + http://ctdbase.org/help/exposureHelp.jsp + + + + ^\d{7}$ + 0000078 + Exposure ontology + false + https://www.ebi.ac.uk/ols/ontologies/exo/terms?iri=http://purl.obolibrary.org/obo/EXO_$1 + + + + Vocabularies for describing exposure data to inform understanding of environmental health. + cjmattin@ncsu.edu + + + + MA + + + + + bioproject + + + + + SWISS-MODEL + + + + false + + + https://github.com/monarch-initiative/GENO-ontology/ + 0000632 + Genotype Ontology + https://raw.githubusercontent.com/monarch-initiative/GENO-ontology/develop/geno-full.obo + mhb120@gmail.com + GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. + +Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013 + + + https://www.ebi.ac.uk/ols/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_$1 + ^\d{7}$ + + + + + NDFRT + + + + microscope + + + + + dbest + + + + + HCVDB + + + + + jws + + + + + Mutant Mouse Resource and Research Centers + https://identifiers.org/mmrrc:$1 + The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections. + + + + false + + 70 + https://www.mmrrc.org + ^\d+$ + + + stitch + + + + + + + FBOL + + + + PeptideAtlas + + + https://identifiers.org/peptideatlas:$1 + The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools. + false + ^PAp[0-9]{8}$ + + + None + PAp00000009 + + + + allergome + + + + inchi + + + + + https://www.ebi.ac.uk/ols/ontologies/omo/terms?iri=http://purl.obolibrary.org/obo/OMO_$1 + An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO). + + + + https://github.com/information-artifact-ontology/ontology-metadata + OBO Metadata Ontology + cjmungall@lbl.gov + false + + + + + None + https://identifiers.org/seed.compound:$1 + + + + cpd15380 + This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems. + SEED Compound + false + ^cpd\d+$ + + + + + OMP + + + ^[A-Z_]{3}[0-9]{4,}$ + https://identifiers.org/ardb:$1 + Antibiotic Resistance Genes Database + + + + The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes. + false + None + + CAE46076 + + + clinical LABoratory Ontology + LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents. + + https://www.ebi.ac.uk/ols/ontologies/labo/terms?iri=http://purl.obolibrary.org/obo/LABO_$1 + + paul.fabry@usherbrooke.ca + false + + https://github.com/OpenLHS/LABO + + + + + + ngl + + + + https://www.ncbi.nlm.nih.gov/medgen + + Human Medical Genetics + + + + MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder. + 760050 + ^[CN]*\d{4,7}$ + + false + https://identifiers.org/medgen:$1 + + + CIO + + + + + + ovae + + + + MIM + + + + + + biodbcore-000989 + + + + OriDB Schizosaccharomyces + ^\d+$ + None + OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe. + + + 1 + https://identifiers.org/oridb.schizo:$1 + false + + + + + https://identifiers.org/dbest:$1 + + BP100000 + + EST database maintained at the NCBI. + + + false + ^([A-Z]+)?\d+(\.\d+)?$ + https://www.ncbi.nlm.nih.gov/genbank/dbest + The dbEST contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms. + + + + hoganwr@gmail.com + + + https://bitbucket.org/uamsdbmi/dron.git + An ontology to support comparative effectiveness researchers studying claims data. + The Drug Ontology + + + false + + https://www.ebi.ac.uk/ols/ontologies/dron/terms?iri=http://purl.obolibrary.org/obo/DRON_$1 + + + RAP-DB Transcript + ^Os\S+t\d{7}-\d{2}$ + Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB. + Os01t0883800-02 + https://identifiers.org/rapdb.transcript:$1 + false + + None + + + + false + + fluticasone + https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1 + None + None + International Nonproprietary Names + + + + + + AFO + + + Fungal Nomenclature and Species Bank + MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations. + + + https://identifiers.org/mycobank:$1 + + http://www.mycobank.org + false + + + ^\d+$ + 349124 + + + General Standard for Food Additives (GSFA) Online Database + http://www.fao.org/gsfaonline + false + None + + http://www.fao.org/gsfaonline/additives/details.html?id=$1 + 174 + + + + Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes. + Rat Genome Database qTL + ^\d+$ + 1354581 + None + + + https://identifiers.org/rgd.qtl:$1 + + false + + + + + mirbase + + + http://www.cropontology.org/ontology/CO_322/Maize + + helpdesk@cropontology-curationtool.org + false + Maize ontology + https://www.ebi.ac.uk/ols/ontologies/co_322/terms?iri=http://purl.obolibrary.org/obo/CO_322_$1 + + Maize Trait Dictionary in template 5 - CIMMYT- September 2016 + + + false + + 4776 + https://identifiers.org/mdm:$1 + + + + Medical Data Models + ^\d+$ + None + The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems. + + + + FUNCBASE.YEAST + + + + + minid + + + + + + pubchem.compound + + + + + EC + + + + MYCO.LEPRA + + + + + + ^HMDB\d+$ + HMDB00001 + false + None + The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data. + + + https://identifiers.org/hmdb:$1 + Human Metabolome Database + + + + + agricola + + + + AspGD_LOCUS + + + + + + 128796-39-4 + false + Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier. + + https://identifiers.org/molbase:$1 + Molbase + None + + + ^(\d{1,7}\-\d{2}\-\d)|([A-Za-z0-9\+\-\_]+)$ + + + ^GEO_[0-9]{9}$ + + https://github.com/ufbmi/geographical-entity-ontology/wiki + An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in "The US declared war on Germany" vs. the US in "The plane entered US airspace". + GEO_000000021 + false + Geographical Entity Ontology + https://identifiers.org/geogeo:$1 + + + hoganwr@gmail.com + + + + + + ehdaa2 + + + + + + Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms. + + false + + https://www.ensembl.org + + + ENSG00000139618 + + + https://identifiers.org/ensembl:$1 + Ensembl database of automatically annotated genomic data + + ^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$ + + + NeuroVault Image + None + + https://identifiers.org/neurovault.image:$1 + + 58788 + + ^[1-9][0-9]*$ + Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images. + + false + + + + + drugbankv4.target + + + erm + + + + + ^UDB\d{6}$ + + + UDB000691 + UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa. + + false + + Molecular database for the identification of fungi + + https://identifiers.org/unite:$1 + http://unite.ut.ee/index.php + + + + ACYPI000159 + + AphidBase Transcript + + false + None + + AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information. + ^ACYPI\d{6}(-RA)?$ + https://identifiers.org/aphidbase.transcript:$1 + + + ligandbook + + + + + HCPCS + + + + + + GTEx + + + + + None + + COc1ccc2c(c1)OC[C@H]1[C@@H]2C2=C(OC1(C)C)C1=C(C(=O)C2=O)[C@H]2c3ccc(OC)cc3OC[C@H]2C(C)(C)O1 + Simplified molecular-input line-entry system + false + None + + + + + vbase2 + + + RNAO + + + + + The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases. + + UniProt Archive + https://identifiers.org/uniparc:$1 + + false + + UPI000000000A + https://www.uniprot.org/uniparc/ + + + ^UPI[A-F0-9]{10}$ + + + + + ^[A-Z_a-z]+$ + Lycalopex_vetulus + http://www.animaldiversity.org + + Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology. + true + + + Animal natural history and life history + + https://identifiers.org/adw:$1 + adw_geeks@umich.edu + + + + + genprop + + + + false + None + PharmGKB Disease + + + The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. + PA447218 + + https://identifiers.org/pharmgkb.disease:$1 + + ^PA\d+$ + + + http://www.ebi.ac.uk/RESID/ + AA0001 + true + ^AA\d{4}$ + + + The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications. + + + https://identifiers.org/resid:$1 + + + john.garavelli@ebi.ac.uk + Protein covalent bond + + + + + co_356 + + + + + ^m\w+$ + + false + None + https://identifiers.org/rouge:$1 + + + The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project. + Rodent Unidentified Gene-Encoded Large Proteins + mKIAA4200 + + + + + vfdb.genus + + + + + WIKIPEDIA.EN + + + false + None + + A comprehensive compendium of human long non-coding RNAs + SNHG3 + LNCipedia + + + cabri + + + + + + + ero + + + + + MFOMD + + + Cell Ontology + + + + addiehl@buffalo.edu + + false + + + https://obophenotype.github.io/cell-ontology/ + 0000062 + ^CL:\d{7}$ + https://identifiers.org/CL:$1 + + + https://raw.githubusercontent.com/obophenotype/cell-ontology/master/cl-full.obo + The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi. + + + + + Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images. + + NeuroVault Collection + None + 3304 + ^[1-9][0-9]*$ + + + false + https://identifiers.org/neurovault.collection:$1 + + + https://identifiers.org/cazy:$1 + Carbohydrate Active EnZYmes + + ^(GT|GH|PL|CE|CBM)\d+(\_\d+)?$ + http://www.cazy.org/ + + + + false + The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features. + + + GT10 + + + + + ICEBERG.FAMILY + + + + + The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits. + https://identifiers.org/iuphar.family:$1 + ^\d+$ + None + IUPHAR family + + false + 78 + + + + + + GO_REF + + + + + CATTLEQTLDB + + + + + brenda + + + + OARCS + + + + + + MNXM1723 + + ^(MNXM\d+|BIOMASS|WATER)$ + MetaNetX chemical + MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components. + false + None + + https://identifiers.org/metanetx.chemical:$1 + + + + Hazardous Substances Data Bank + None + 5621 + false + + None + + + + + https://github.com/jannahastings/mental-functioning-ontology + https://www.ebi.ac.uk/ols/ontologies/mfomd/terms?iri=http://purl.obolibrary.org/obo/MFOMD_$1 + + false + The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF). + + janna.hastings@gmail.com + + Mental Disease Ontology + + + BitterDB Receptor + BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors. + + + https://identifiers.org/bitterdb.rec:$1 + ^\d+$ + false + None + + 1 + + + + + https://github.com/aellenhicks/htn_owl + aellenhicks@gmail.com + + + false + Hypertension Ontology + + https://www.ebi.ac.uk/ols/ontologies/htn/terms?iri=http://purl.obolibrary.org/obo/HTN_$1 + An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines + + + + + pseudomonas + + + None + https://glygen.org/glycan/$1 + https://glygen.org/glycan/ + GlyGen: Computational and Informatics Resources for Glycoscience + false + + + G24361QY + + + 137 + C. elegans Small Molecule Identifier Database + false + https://smid-db.org/smid/$1 + https://smid-db.org/ + + None + + + BDGP_EST + + + + + OTL + + + + + BIOMODELS.DB + + + + + + + phosphosite.protein + + + baeverma@jcvi.org + + + https://github.com/OGMS/ogms + + The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats. + +OGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology. + Ontology for General Medical Science + https://www.ebi.ac.uk/ols/ontologies/ogms/terms?iri=http://purl.obolibrary.org/obo/OGMS_$1 + + false + 0000031 + + + + + + Brachiaria ontology + false + Brachiaria (forages) ontology TD v5 - Version Oct 2016 + helpdesk@cropontology-curationtool.org + https://www.ebi.ac.uk/ols/ontologies/co_345/terms?iri=http://purl.obolibrary.org/obo/CO_345_$1 + http://www.cropontology.org/ontology/CO_345/Brachiaria + + + homologene + + + + + + Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology. + false + + + ^\d+$ + None + + Rat Genome Database strain + https://identifiers.org/rgd.strain:$1 + 5688061 + + + Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms. + ^\d{7}$ + + + + false + + https://www.ebi.ac.uk/ols/ontologies/xco/terms?iri=http://purl.obolibrary.org/obo/XCO_$1 + 0000780 + https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000 + Experimental condition ontology + + jrsmith@mcw.edu + + + + + ensembl.plant + + + + + rnacentral + + + fb + + + + + + Contributor Role Ontology + + + https://github.com/data2health/contributor-role-ontology + whimar@ohsu.edu + https://raw.githubusercontent.com/data2health/contributor-role-ontology/master/cro.obo + https://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_$1 + A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability. + + 0000038 + ^\d{7}$ + + false + + + P3841 + + + + + UniProt Variants + ^VAR_\d+$ + false + + None + None + https://web.expasy.org/variant_pages/$1.html + VAR_068078 + + + hom + + + + + + + BIOSAMPLE + + + METLIN + + + + + + + gxa.expt + + + DICOM Controlled Terminology + DICOM Controlled Terminology + dclunie@dclunie.com + + http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html + https://www.ebi.ac.uk/ols/ontologies/dicom/terms?iri=http://purl.obolibrary.org/obo/DICOM_$1 + false + + + + + + biogrid + + + + + + PRIDE + + + + + Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse). + https://identifiers.org/omia:$1 + Online Mendelian Inheritance in Animals + + ^\d+$ + false + None + 1000 + + + + + International Molecular Exchange + https://identifiers.org/imex:$1 + + false + + The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources. + IM-19210-3 + None + ^IM-\d+(-?)(\d+?)$ + + + + + https://identifiers.org/datanator.gene:$1 + + + K00973 + false + None + Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms. + ^K[0-9]+$ + Datanator Gene + + + ^NCT\d{8}$ + NCT00222573 + ClinicalTrials.gov + + + + ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries + false + None + https://identifiers.org/clinicaltrials:$1 + + + + Protein Model Database + false + PM0012345 + + ^PM\d{7} + + + The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques. + None + https://identifiers.org/pmdb:$1 + + + + + https://identifiers.org/miriam.collection:$1 + + None + MIR:00000008 + true + + MIRIAM Registry collection + + MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections. + ^MIR:000\d{5}$ + + + BioGRID + + + + + imex + + + + + + sider.effect + + + + + + WBPhenotype + + + + + taxonomy + + + P3870 + + + + + https://reg.clinicalgenome.org + None + false + + https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1 + ClinGen Allele Registry + CA981206459 + + + + + + MGI + + + + + uberon + + + + + NMR + + + + + PMAP.CUTDB + + + false + 1h68 + + https://identifiers.org/opm:$1 + + The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization. + ^[0-9][A-Za-z0-9]{3}$ + None + + + Orientations of Proteins in Membranes Database + + + + OMIT + + + + + VIDO + + + + + + The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network. + + sbgn.er.level-1.version-1.2 + COMBINE specifications + false + None + https://identifiers.org/combine.specifications:$1 + + ^\w+(\-|\.|\w)*$ + + + + false + None + https://identifiers.org/biostudies:$1 + + + S-EPMC6266652 + ^S-[A-Z]{4}[A-Z\d\-]+$ + + BioStudies database + The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication. + + + hovergen + + + + + + ^\d+$ + PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels. + None + PaxDb Protein + + 977869 + false + + https://identifiers.org/paxdb.protein:$1 + + + + PIGQTLDB + + + + + + DDANAT + + + + + PECO + + + + + + NDDF + + + + NCBITaxon + + + + Bgee organ + ^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$ + false + + None + https://identifiers.org/bgee.organ:$1 + + EHDAA:2185 + + + Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures. + + + arxiv + + + + + Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments + https://github.com/AgriculturalSemantics/agro + m.a.laporte@cgiar.org + https://www.ebi.ac.uk/ols/ontologies/agro/terms?iri=http://purl.obolibrary.org/obo/AGRO_$1 + + + + false + + + Agronomy Ontology + + + + + lincs.protein + + + cpc + + + + + + OBA + + + + + ONE + + + + + + http://dictybase.org + DDB0191090 + A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics + + false + + dictyBase + + + + + + ECYANO.RULE + + + + PAXDB.ORGANISM + + + + + genefarm + + + + + + TTD.DRUG + + + + cl + + + + + pubchem.bioassay + + + + + obcs + + + + https://github.com/obophenotype/caro/ + An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species + 0000000 + + https://www.ebi.ac.uk/ols/ontologies/caro/terms?iri=http://purl.obolibrary.org/obo/CARO_$1 + + + false + Common Anatomy Reference Ontology + + + https://github.com/obophenotype/caro/raw/master/src/ontology/caro.owl + haendel@ohsu.edu + + + + + + IMG.TAXON + + + The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships. + http://pir.georgetown.edu/pirsf/ + + false + + https://identifiers.org/pirsf:$1 + + PIRSF000100 + + + PIR Superfamily Classification System + + ^PIRSF\d{6}$ + + + ^HIT\d{9}(\.\d+)?$ + H-InvDb Transcript + + + + https://identifiers.org/hinv.transcript:$1 + false + None + HIT000195363 + + H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view. + + + + + stitch + + + + virsirna + + + + + + FIX + + + + + PORO + + + + + insdc.cds + + + GPMDB + + + + + + CranioMaxilloFacial ontology + + https://code.google.com/p/craniomaxillofacial-ontology/ + engelsta@ohsu.edu + None + false + + + + mo + + + + + CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps. + + None + ^\d+$ + https://identifiers.org/caps:$1 + + false + CAPS-DB + 434 + + + + + spd + + + + + ^[A-Z-_0-9]+$ + + + GLIDA GPCR + + The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors. + ACM1_HUMAN + false + None + https://identifiers.org/glida.gpcr:$1 + + + + + + mgnify.samp + + + N0000001662 + None + + + false + None + + National Drug File - Reference Terminology + + + + PHIPO + + + + false + + helpdesk@cropontology-curationtool.org + http://www.cropontology.org/ontology/CO_358/Cotton + Cotton ontology from CottonGen database - June 2019 + Cotton ontology + https://www.ebi.ac.uk/ols/ontologies/co_358/terms?iri=http://purl.obolibrary.org/obo/CO_358_$1 + + + + + XAO + + + + vo + + + + + + + MedGen + + + + medlineplus + + + + IUPHAR.LIGAND + + + + + UniProt Subcellular Locations + 0002 + https://www.uniprot.org/locations/ + None + https://www.uniprot.org/locations/SL-$1 + + ^\d+$ + false + + + + + + bugbase.protocol + + + + ZECO + + + + + + CGSC + + + + Integrated Taxonomic Information System + + https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1 + None + false + 589462 + ^\d+$ + None + + + false + https://identifiers.org/viralzone:$1 + + + 992 + + ViralZone + ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures. + ^\d+$ + + None + + + false + CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information. + + http://www.cas.org/expertise/cascontent/registry/index.html + + + 50-00-0 + https://identifiers.org/cas:$1 + + + ^\d{1,7}\-\d{2}\-\d$ + CAS Chemical Registry + + + + + + BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe. + BioGRID + + + https://identifiers.org/biogrid:$1 + 31623 + false + + ^\d+$ + None + + + http://www.mirbase.org/ + + + + MIMAT\d{7} + MIMAT0046872 + + miRBase mature sequence + + false + The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence. + http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1 + + + None + + + The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN). + Canadian Drug Product Database + 63250 + + false + + ^\d+$ + https://identifiers.org/cdpd:$1 + + + + + TADS + + + mmp.db + + + + + + unimod + + + + + + https://identifiers.org/bold.taxonomy:$1 + The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information. + http://www.barcodinglife.com + + + false + + ^\d+$ + 27267 + Barcode of Life database + + + umbbd.enzyme + + + + + + AT1G73965 + ^\w+(\.\d+)?(\.\d+)?$ + + false + None + + Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes. + https://identifiers.org/ensembl.plant:$1 + + Ensembl Plants + + + + compulyeast + + + + + + kegg.drug + + + oma.protein + + + + + CTD Disease + None + + + ^D\d+$ + https://identifiers.org/ctd.disease:$1 + + false + D053716 + The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. + + + + + + + + cco + + + UNITE + + + + + + + GO + + + + + ttd.drug + + + DOID + + + + + 23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00 + + ^[a-zA-Z0-9\-:#\.]+$ + + + Assists in resolving data across cloud resources. + https://identifiers.org/dev.ga4ghdos:$1 + false + None + Development Data Object Service + + + + + CRYOEM + + + + Bio-MINDER Tissue Database + aef4c195-9cf9-46db-a12a-7cfd1ff3eec3 + + https://identifiers.org/biominder:$1 + + None + + ^[a-z0-9\-]+$ + Database of the dielectric properties of biological tissues. + + false + + + + http://worfdb.dfci.harvard.edu/ + WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends). + + + C. elegans ORFeome cloning project + T01B6.1 + false + ^\w+(\.\d+)? + + https://identifiers.org/worfdb:$1 + + + + geo + + + + + gmd.gcms + + + + + + + MMDB + + + The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database. + true + https://bioregistry.io + + https://bioregistry.io/$1:$2 + false + Bioregistry + true + chebi + + + + + SWO + + + + + sgd + + + + ELM + + + + slm + + + + + + + fao + + + + + SABIORK.KINETICRECORD + + + PLASMODB + + + + + false + + http://biocyc.org/ + + + ^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$ + BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms. + + + + ECOLI:CYT-D-UBIOX-CPLX + https://identifiers.org/biocyc:$1 + BioCyc collection of metabolic pathway databases + + + + + ^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$ + SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data. + https://identifiers.org/sabiork.ec:$1 + 2.7.1.1 + None + SABIO-RK EC Record + false + + + + + ^[A-Za-z_0-9]+$ + + + Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances. + https://identifiers.org/elm:$1 + false + CLV_MEL_PAP_1 + None + Eukaryotic Linear Motif Resource + + + + + + + COVID-19 + + + + + + + https://identifiers.org/doqcs.model:$1 + false + Database of Quantitative Cellular Signaling: Model + The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models. + + ^\d+$ + None + + 57 + + + + Golm Metabolome Database Profile + https://identifiers.org/gmd.profile:$1 + Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues. + false + None + ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + 10b38aaf-b977-4950-85b8-f4775f66658d + + + + + + None + Morpheus model repository + M0001 + ^M[0-9]{4,}$ + + https://identifiers.org/morpheus:$1 + + The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software. + + false + + + paleodb + + + + + + + PATO + + + + + WormBase + + + BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes. + + false + None + + BiGG Metabolite + + 12dgr161 + + ^[a-z_A-Z0-9]+$ + https://identifiers.org/bigg.metabolite:$1 + + + + RICENETDB.GENE + + + + + + subtilist + + + smart + + + + + + + complexportal + + + OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration). + https://www.ebi.ac.uk/ols/ontologies/ohpi/terms?iri=http://purl.obolibrary.org/obo/OHPI_$1 + Ontology of Host Pathogen Interactions + + edong@umich.edu + https://github.com/OHPI/ohpi + false + + + + + + + + ro + + + + + UMBBD.REACTION + + + CLINICALTRIALS + + + + + + + GenBank + + + ^\d{7}$ + https://www.ebi.ac.uk/ols/ontologies/ehdaa2/terms?iri=http://purl.obolibrary.org/obo/EHDAA2_$1 + Human developmental anatomy, abstract + false + A structured controlled vocabulary of stage-specific anatomical structures of the developing human. + + + + 0000000 + https://github.com/obophenotype/human-developmental-anatomy-ontology + + + J.Bard@ed.ac.uk + + + eagle-i resource ontology + false + An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens. + + Marc_Ciriello@hms.harvard.edu + + + https://open.med.harvard.edu/wiki/display/eaglei/Ontology + + + 0001655 + https://www.ebi.ac.uk/ols/ontologies/ero/terms?iri=http://purl.obolibrary.org/obo/ERO_$1 + + + + + zeco + + + lincs.cell + + + + + nomen + + + + + ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession. + None + SCV000151292 + false + https://identifiers.org/clinvar.submission:$1 + ClinVar Submission + + + + + ^SCV\d+(\.\d+)?$ + + + + bao + + + + ^[A-Z0-9]{5}\d+$ + None + + OMA Protein + false + + + https://identifiers.org/oma.protein:$1 + OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records. + + HUMAN16963 + + + + + pocketome + + + NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs. + None + + + + ^\w+\_\w+$ + https://identifiers.org/nuclearbd:$1 + false + prgr_human + + NucleaRDB + + + None + false + + + GenBank + U49845 + + + https://www.ncbi.nlm.nih.gov/nucleotide/$1 + + https://www.ncbi.nlm.nih.gov/genbank/ + + + 1050 + BacMap Biography + false + + None + + + BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information. + + ^\d+$ + https://identifiers.org/bacmap.biog:$1 + + + + + atcvet + + + + + GXA.EXPT + + + + OBCS + + + + Ontology about the development and life stages of the C. elegans + 0000690 + + C. elegans development ontology + https://www.ebi.ac.uk/ols/ontologies/wbls/terms?iri=http://purl.obolibrary.org/obo/WBLS_$1 + + + cgrove@caltech.edu + + false + + ^\d{7}$ + + https://github.com/obophenotype/c-elegans-development-ontology + + + GTOPDB + + + + + + S1 + + https://identifiers.org/merops.family:$1 + + MEROPS Family + + ^[SCTAGMNU]\d+$ + The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families. + false + None + + + + + P2576 + + + + + cellimage + + + fungidb + + + + + None + + ^K\d+$ + + KEGG Orthology + + + https://identifiers.org/kegg.orthology:$1 + KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms. + + K00001 + false + + + + + https://github.com/OPMI/opmi + yongqunh@med.umich.edu + + https://www.ebi.ac.uk/ols/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_$1 + false + OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles. + + Ontology of Precision Medicine and Investigation + + + + + INTACT + + + yid + + + + + gecko + + + + + + + RXNO + + + HDR + + + + + ppr103739 + false + None + + https://europepmc.org/article/ppr/$1 + Eurpoe PMC Preprints + Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000. + + + + + pharmgkb.pathways + + + + IDO-COVID-19 + + + + + false + None + Japan Chemical Substance Dictionary + The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST). + + J55.713G + + https://identifiers.org/jcsd:$1 + ^J\d{1,3}(\.\d{3})?(\.\d{1,3})?[A-Za-z]$ + + + + + + ZECO + + + + MAMO + + + + xenbase + + + + + None + Biosapiens + false + None + + + + + ComplexPortal + + + + + + FOAF + + + Bgee stage + + None + + false + + HsapDO:0000004 + Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages. + https://identifiers.org/bgee.stage:$1 + ^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$ + + + + An ontology to represent genomics cohort attributes. + + Genomics Cohorts Knowledge Ontology + https://github.com/IHCC-cohorts/GECKO + false + + + https://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_$1 + + rbca.jackson@gmail.com + + + + RO + + + + + umls + + + + http://github.com/seger/aao + Amphibian gross anatomy + + true + david.c.blackburn@gmail.com + + + None + + + + CL + + + + + + ASAP + + + + + + ^\d{7}$ + 0005067 + + https://www.ebi.ac.uk/ols/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_$1 + Ontology of Microbial Phenotypes + false + + jimhu@tamu.edu + http://microbialphenotypes.org + An ontology of phenotypes covering microbes + + + None + None + Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List (SAEL) + + true + + + + odc.sci + + + + + + BEETLEBASE + + + + + dev.ga4ghdos + + + + + NBRC + + + + fobi + + + + + + jcm + + + ICD10 + + + + + + zinc + + + + + + https://identifiers.org/oryzabase.gene:$1 + false + + + Oryzabase Gene + None + 117 + Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information. + ^\d+$ + + + + PMP + + + + + mco + + + + false + + Insertion sequence elements database + + http://www-is.biotoul.fr/ + ^IS\w+(\-\d)?$ + + ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available. + ISA1083-2 + + https://identifiers.org/isfinder:$1 + + + + + IMGT.HLA + + + + + + genetree + + + wikipathways + + + + + Veterans Administration National Drug File + + None + 4019477 + false + + + None + + + + + PPO + + + + biomodels.kisao + + + + uspto + + + + + false + + + Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue. + https://identifiers.org/asin:$1 + Amazon Standard Identification Number + None + ^[0-9]{10}$ + + + 0471491039 + + + phosphosite.residue + + + + + + FPLX + + + + + pubchem.substance + + + + gateway + + + + + + + VBASE2 + + + https://loinc.org/ + https://loinc.org/$1/ + + + LL379-9 + Logical Observation Identifiers Names and Codes + None + + false + + + + + true + DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals. + + None + + AT1G01030.1 + ^AT[1-5]G\d{5}(\.\d+)?$ + DATF + https://identifiers.org/datf:$1 + + + + + + ^\d+$ + Germplasm Resources Information Network + https://identifiers.org/grin.taxonomy:$1 + 19333 + GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact. + + https://www.ars-grin.gov/ + false + + + + + ligandbook + + + + + + + P3937 + + + + TGMA + + + + BDGP insertion DB + https://identifiers.org/bdgp.insertion:$1 + + + KG09531 + false + None + ^\w+$ + + + BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element. + + + + + ^AASequence:\d{10}$ + AASequence:1009107926 + The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept + + + https://identifiers.org/tair.protein:$1 + TAIR Protein + false + None + + + https://www.ebi.ac.uk/ols/ontologies/cdao/terms?iri=http://purl.obolibrary.org/obo/CDAO_$1 + + + Comparative Data Analysis Ontology + + + https://github.com/evoinfo/cdao + + balhoff@renci.org + The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character. + false + + + + None + https://identifiers.org/facebase:$1 + ^FB\d{8}$ + FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects. + FaceBase Data Repository + false + + + + FB00000917 + + + + + phosphopoint.kinase + + + glytoucan + + + + + + + so + + + The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules. + + https://identifiers.org/umbbd.rule:$1 + EAWAG Biocatalysis/Biodegradation Database + + + ^bt\d+$ + http://eawag-bbd.ethz.ch/ + + false + bt0001 + + + + + + ENSEMBL.BACTERIA + + + None + + MMP3888430 + https://identifiers.org/mmp.fun:$1 + ^MMP\d+.\d+$ + MarFun is manually curated database for marine fungi which is a part of the MAR databases. + false + MarFun + + + + + co_350 + + + + + None + + The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region. + VIRsiRNA + false + + ^virsi\d+$ + + virsi1909 + https://identifiers.org/virsirna:$1 + + + + + RefSeq + + + + geogeo + + + + pubchem.bioassay + + + + + An ontology of core ecological entities + + false + + + Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms. + 00000001 + https://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_$1 + + ^\d+$ + p.buttigieg@gmail.com + + https://github.com/EcologicalSemantics/ecocore + + + + + clinicaltrials + + + + + insdc.gca + + + + + orphanet + + + ANTWEB + + + + + HAO + + + + + ecoliwiki + + + + + + + euclinicaltrials + + + LIPIDMAPS + + + + + + + ec-code + + + + false + + An ontology for non-coding RNA, both of biological origin, and engineered. + + https://www.ebi.ac.uk/ols/ontologies/ncro/terms?iri=http://purl.obolibrary.org/obo/NCRO_$1 + http://omnisearch.soc.southalabama.edu/w/index.php/Ontology + + huang@southalabama.edu + Non-Coding RNA Ontology + + + + Homeodomain Research + 63 + + The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders. + ^\d+$ + false + None + https://identifiers.org/hdr:$1 + + + + + + amphx + + + + + Peroxibase + None + Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences. + https://identifiers.org/peroxibase:$1 + + + ^\d+$ + false + + + + 5282 + + + + grsdb + + + + + + bold.taxonomy + + + + https://identifiers.org/tarbase:$1 + TarBase + TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used. + + None + + false + ^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)? + + hsa-let-7a-2-3p + + + + + METABOLIGHTS + + + + + wikipedia.en + + + VIRSIRNA + + + + + + + CABRI + + + + + adw + + + + OGSF + + + + + + isfinder + + + + vt + + + + + + neurovault.image + + + Pathogen-Host Interaction database Ontology used by Ensembl + https://www.ebi.ac.uk/ols/ontologies/phi/terms?iri=http://purl.obolibrary.org/obo/PHI_$1 + + None + + false + PHI-base Ontology + + + + cido + + + + SPLASH + + + + + + + EMAPA + + + + IDODEN + + + + + + ADW + + + + metlin + + + + ^[A-Za-z-0-9]+$ + https://identifiers.org/polbase:$1 + PolBase + None + + + 19-T4 + Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity. + + + false + + + + + phipo + + + + ogms + + + + + DDPHENO + + + + MAMO + + + + + + metanetx.compartment + + + + + + asin + + + BILA + + + + + + None + https://identifiers.org/arraymap:$1 + false + icdom:8500_3 + + arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome. + + ^[\w\-:,]{3,64}$ + ArrayMap + + + + MAXO + + + + + + NCIT + + + + + NCBITaxon + + + + + OHPI + + + + IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments. + https://www.ideal-db.org + + https://identifiers.org/ideal:$1 + ^IID\d+$ + + IID00001 + Intrinsically Disordered proteins with Extensive Annotations and Literature + + + false + + + + + NCRO + + + + None + + None + Pfam Clans + false + + + GENO + + + + + + https://www.ebi.ac.uk/ols/ontologies/upa/terms?iri=http://purl.obolibrary.org/obo/UPA_$1 + + ^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$ + false + Anne.Morgat@sib.swiss + + + https://raw.githubusercontent.com/geneontology/unipathway/master/upa.obo + A manually curated resource for the representation and annotation of metabolic pathways + https://github.com/geneontology/unipathway + + UCR00513 + + + Unipathway + + + OMRSE + + + + + https://www.chemspider.com/ + ^\d+$ + + https://identifiers.org/chemspider:$1 + 56586 + + false + ChemSpider + + ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources. + + + + + + + trichdb + + + WormBase RNAi + + + + WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes. + WBRNAi00086878 + ^WBRNAi\d{8}$ + https://identifiers.org/wb.rnai:$1 + false + None + + + + + + dragondb.dna + + + po + + + + + + HOM + + + + + haendel@ohsu.edu + NCI Thesaurus + + false + http://purl.obolibrary.org/obo/ncit.obo + + + + + C138986 + + ^C\d+$ + NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code. + https://identifiers.org/ncit:$1 + https://github.com/NCI-Thesaurus/thesaurus-obo-edition + + + + ^\w{2,4}\d{5}$ + + false + + + https://identifiers.org/kegg.pathway:$1 + rsk00410 + + + KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks. + + http://www.genome.jp/kegg/pathway.html + + KEGG Pathways Database + + + + napp + + + + + + wikipedia.en + + + helpdesk@cropontology-curationtool.org + + http://www.cropontology.org/ontology/CO_331/Sweet%20Potato + https://www.ebi.ac.uk/ols/ontologies/co_331/terms?iri=http://purl.obolibrary.org/obo/CO_331_$1 + Sweet Potato Trait Dictionary in template v5 - CIP - November 2019 + + Sweet Potato ontology + false + + + + dron + + + + + scop + + + + OVAE + + + + + + https://identifiers.org/rebase:$1 + http://rebase.neb.com/rebase/rebase.html + ^\d+$ + 101 + REBASE restriction enzyme database + false + + + + + REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data. + + + + + https://identifiers.org/dommino:$1 + 2GC4 + DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides. + http://korkinlab.org/dommino + false + + + Database of Macromolecular Interactions + + ^[0-9][A-Za-z0-9]{3}$ + + + + + The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines. + https://identifiers.org/ricegap:$1 + LOC_Os02g13300 + + Rice Genome Annotation Project + ^LOC\_Os\d{1,2}g\d{5}$ + + false + None + + + + + polcaes@gmail.com + None + FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data + + Food-Biomarker Ontology + https://www.ebi.ac.uk/ols/ontologies/fobi/terms?iri=http://purl.obolibrary.org/obo/FOBI_$1 + + false + + + + + kegg.module + + + + + TARBASE + + + + + pgx + + + ^EGAS\d{11}$ + The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets. + European Genome-phenome Archive Study + + false + + + + EGAS00000000001 + https://identifiers.org/ega.study:$1 + None + + + CRYPTODB + + + + + + PDRO + + + + https://www.ebi.ac.uk/ols/ontologies/pco/terms?iri=http://purl.obolibrary.org/obo/PCO_$1 + 0000021 + + + https://github.com/PopulationAndCommunityOntology/pco + + The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology. + + false + rlwalls2008@gmail.com + Population and Community Ontology + + ^\d{7}$ + + + false + aa78a43f-9c4d-11eb-9e72-0ac135e8bacf + Network Data Exchange + https://www.ndexbio.org + + https://www.ndexbio.org/viewer/networks/$1 + The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge. + + + + grid + + + + EHDA + + + + + + + ECO + + + DPV + + + + + + + ISSN + + + + + None + The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage. + + https://identifiers.org/insdc.gca:$1 + GCA_000155495.1 + ^GC[AF]_[0-9]{9}\.[0-9]+$ + + Genome assembly database + false + + + vegbank + + + + + + OAE + + + + MI + + + + + BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies. + BioPortal + + + ^\d+$ + https://identifiers.org/bioportal:$1 + None + 1046 + false + + + + + P2062 + + + + + + https://identifiers.org/hprd:$1 + false + + + + ^\d+$ + None + 00001 + Human Protein Reference Database + The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome. + + + + TTO + + + + + ECAO + + + + + + fairsharing + + + https://www.uniprot.org/database/ + UniProt Cross-ref database + + The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources. + false + true + false + 0174 + + + + biolink + + + + + + https://rgd.mcw.edu/ + + Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes. + ^\d{4,}$ + + + + 7499841 + + Rat Genome Database + + + https://identifiers.org/rgd:$1 + false + + + dragondb.protein + + + + + + homologene + + + + Soybean ontology + + false + + helpdesk@cropontology-curationtool.org + https://www.ebi.ac.uk/ols/ontologies/co_336/terms?iri=http://purl.obolibrary.org/obo/CO_336_$1 + http://www.cropontology.org/ontology/CO_336/Soybean + Soybean Trait Dictionary in template v5 - IITA - July 2015 + + + envipath + + + + + massive + + + + + false + + + + + + https://identifiers.org/doi:$1 + http://dx.doi.org/ + ^(doi\:)?\d{2}\.\d{4}.*$ + 10.1038/nbt1156 + The Digital Object Identifier System is for identifying content objects in the digital environment. + + Digital Object Identifier + + + + + spdx + + + + ISSN + + + + AFTOL.TAXONOMY + + + + + + + UO + + + + + sheepqtldb + + + + + ontoneo + + + + EXO + + + + + funcbase.yeast + + + + https://identifiers.org/bdgp.est:$1 + The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI). + + false + Berkeley Drosophila Genome Project EST database + EY223054.1 + + http://www.fruitfly.org/EST/index.shtml + + ^\w+(\.)?(\d+)?$ + + + + + + OHD + + + + + + MIRIAM.RESOURCE + + + + OMRSE + + + + aop.relationships + + + + + + OPB + + + + dpv + + + + + + + + FBtr0084214 + Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes. + ^\w+(\.)?\d+$ + Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa. + + http://metazoa.ensembl.org/ + + https://identifiers.org/ensembl.metazoa:$1 + + false + + + + rebase + + + + ^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$ + Plant Transcription Factor Database + + None + Ath_AT1G01030.1 + + + The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors. + false + https://identifiers.org/planttfdb:$1 + + + + + MPIO + + + + DrugBank + + + + + + cellimage + + + + + + pw + + + + LABO + + + + + DCAT + + + + + + protclustdb + + + + Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets. + ^[A-Za-z]+$ + https://biomodels.net/vocab/idot.rdf#$1 + false + + identifierPattern + http://biomodels.net/vocab/idot.rdf + + + Identifiers.org Terms + + + + gpmdb + + + + + + google.patent + + + ^\d{7}$ + https://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_$1 + false + 0001807 + + + + + Ontology of rat strains + http://rgd.mcw.edu/rgdweb/search/strains.html + + Rat Strain Ontology + sjwang@mcw.edu + + + + + TRITRYPDB + + + VANDF + + + + + + obi + + + + false + + https://raw.githubusercontent.com/OmniSearch/omit/master/src/ontology/omit.obo + + + 0000069 + huang@southalabama.edu + + + + http://omit.cis.usouthal.edu/ + Ontology for MicroRNA Target + ^\d{7}$ + The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes). + https://identifiers.org/omit:$1 + + + + + + + VIRALZONE + + + + http://www.genedb.org/gene/ + + https://identifiers.org/genedb:$1 + false + + LinJ.20.0070 + + ^[\w\d\.-]*$ + GeneDB + + + GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the "Pathogen Genomics" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed. + + + + PRODOM + + + + + UMBBD.ENZYME + + + + + NCBIProtein + + + + + + NeuroMorpho + false + + + None + + Rosa2 + https://identifiers.org/neuromorpho:$1 + ^\w+$ + NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons. + + + BindingDB + + + + + + CALIPHO Group Ontology of Human Anatomy + None + None + ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo + false + + + MF_01400 + https://identifiers.org/hamap:$1 + + + + + ^MF_\d+$ + http://hamap.expasy.org/ + HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries. + High-quality Automated and Manual Annotation of microbial Proteomes + + + false + + + false + TIGR00010 + + + ^TIGR\d+$ + + + + https://identifiers.org/tigrfam:$1 + http://www.tigr.org/TIGRFAMs/index.shtml + TIGR protein families + TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. + + + + + MACIE + + + iRefWeb + false + + 617102 + https://identifiers.org/irefweb:$1 + + + iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived. + None + + ^\d+$ + + + + HSO + + + + + + issn + + + false + None + + https://identifiers.org/gudmap:$1 + ^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$ + The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract. + Q-2958 + + + Genitourinary Development Molecular Anatomy Project + + + + sisu + + + + + + dicom + + + + + + biosample + + + + hso + + + + + P595 + + + + RXCUI + + + + + MIRBASE + + + + + + SEED + + + + BRENDA + + + + + + None + https://www.w3.org/2003/01/geo/wgs84_pos + WGS84 Geo Positioning + false + http://www.w3.org/2003/01/geo/wgs84_pos#$1 + + + + + + hdr + + + + + EXAC.VARIANT + + + NeuroLex Anatomy + None + 090201 + + false + None + http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1 + + + Charles Tapley Hoyt + + + INO + + + + + + + homd.seq + + + IDEAL + + + + + REACT + + + + + Lentil Trait Dictionary in template v5 - ICARDA - July 2015 + + false + + Lentil ontology + http://www.cropontology.org/ontology/CO_339/Lentil + https://www.ebi.ac.uk/ols/ontologies/co_339/terms?iri=http://purl.obolibrary.org/obo/CO_339_$1 + helpdesk@cropontology-curationtool.org + + + dbprobe + + + + + false + + + RepeatsDB Protein + None + P29894 + https://identifiers.org/repeatsdb.protein:$1 + ^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$ + RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database. + + + + micro + + + + OBCS + + + + + + CHMO + + + + + GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'. + 2679240 + false + ^\w+$ + + Network of Different Plant Genomic Research Projects + http://www.gabipd.org/information/about.shtml + + + https://identifiers.org/gabi:$1 + + + + SIBO + + + + + ^PED\d{5}e\d{3}$ + false + Protein Ensemble Database ensemble + + The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins. + https://identifiers.org/ped.ensemble:$1 + + None + PED00017e001 + + + BioSimulators + + https://identifiers.org/biosimulators:$1 + [a-zA-Z0-9-_]+ + + BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML). + false + vcell + None + + + COMPULYEAST + + + + + + + + https://rnacentral.org + https://identifiers.org/rnacentral:$1 + + URS0000759CF4 + RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases. + + ^URS[0-9A-F]{10}(\_\d+)?$ + + false + RNAcentral + + + false + + JWS Online + + None + + + ^\w+$ + https://identifiers.org/jws:$1 + JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser. + curien + + + + worfdb + + + + paleodb + + + + + + + IREFWEB + + + + CHIRO + + + + funcbase.yeast + + + + + + REBASE + + + + mipmod + + + + + TOL + + + + + + GeneID + + + + 408 + ^[0-9]*$ + The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data. + https://identifiers.org/odc.tbi:$1 + None + + false + Open Data Commons for Traumatic Brain Injury + + + + false + PA146123006 + None + + + ^PA\d+$ + PharmGKB Pathways + + https://identifiers.org/pharmgkb.pathways:$1 + The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. +PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies. + + + + + false + None + + Flybase Cell Line + None + + + + Wikipedia + + + + + + SWH + + + + + PO + + + + oci + + + + + SWO + + + + MycoBrowser marinum + Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information. + MMAR_2462 + + + + false + None + + https://identifiers.org/myco.marinum:$1 + ^MMAR\_\d+$ + + + dlxb + + + + + MarRef + MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes. + + false + None + https://identifiers.org/mmp.ref:$1 + + ^MMP\d+.\d+$ + MMP3312982.2 + + + + + + orthodb + + + + + + SubtiList + + + Sorghum TDv5 March 2021 + https://www.ebi.ac.uk/ols/ontologies/co_324/terms?iri=http://purl.obolibrary.org/obo/CO_324_$1 + false + + helpdesk@cropontology-curationtool.org + http://www.cropontology.org/ontology/CO_324/Sorghum + Sorghum ontology + + + + + https://europepmc.org/article/CBA/$1 + 375364 + false + Chinese Biological Abstracts + None + None + + + + OARCS + + + + + MESH + + + + RXN-14904 + + ^[A-Za-z0-9+_.%-:]+$ + MetaCyc Reaction + https://identifiers.org/metacyc.reaction:$1 + MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway. + false + + None + + + + + + HGVPM623 + https://www.gwascentral.org/phenotypes + https://identifiers.org/gwascentral.phenotype:$1 + GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype. + GWAS Central Phenotype + + false + + ^HGVPM\d+$ + + + + CRO + + + + + https://www.swisslipids.org/#/entity/$1 + None + + false + None + + SLM:000000341 + SwissLipid + + + + + FAIRsharing.uBpQ1q + + + + + pharmgkb.drug + + + + + + + + Mammalian Phenotype Ontology + http://www.informatics.jax.org/searches/MP_form.shtml + + ^MP:\d{7}$ + pheno@jax.org + The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways. + + https://identifiers.org/MP:$1 + + false + 0005452 + + + + + + kegg.compound + + + Drosophila gross anatomy + cp390@cam.ac.uk + + + + https://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBBT_$1 + http://purl.obolibrary.org/obo/fbbt + An ontology of Drosophila melanogaster anatomy. + + false + + 00007294 + + ^\d{8}$ + + + + ecyano.rule + + + + ECO + + + + + + + SPD + + + + PomBase + + + + GR:0080039 + https://identifiers.org/gramene.gene:$1 + Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene. + http://www.gramene.org/ + + false + + + Gramene Gene + + + ^GR\:\d+$ + + + KEGG + + + + + snoRNABase + A comprehensive database of + +human H/ACA and C/D box snoRNAs. + false + https://www-snorna.biotoul.fr/ + + + + + + charprot + + + biocatalogue.service + + + + + OGI + + + + + + + CABRI + + + + fbol + + + + false + None + + + + National Bibliography Number + https://identifiers.org/nbn:$1 + ^urn\:nbn\:[A-Za-z_0-9]+\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$ + urn:nbn:fi:tkk-004781 + + The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier. + + + FishBase + None + + false + 6472 + None + + + + BIGG.COMPARTMENT + + + + + + + + + + The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies. + ^RO_\d{7}$ + https://identifiers.org/ro:$1 + https://github.com/oborel/obo-relations/raw/master/ro.obo + + + https://oborel.github.io/ + + + Relation Ontology + + false + RO_0002533 + cjmungall@lbl.gov + + + + EXO + + + + co_327 + + + + + FAIRsharing.62qk8w + true + https://fairsharing.org/ + https://fairsharing.org/$1 + true + FAIRSharing + A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies. + + false + + + The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment. + yongqunh@med.umich.edu + Coronavirus Infectious Disease Ontology + https://github.com/cido-ontology/cido + + + false + https://www.ebi.ac.uk/ols/ontologies/cido/terms?iri=http://purl.obolibrary.org/obo/CIDO_$1 + + + + + ^[A-Z]+[0-9]+$ + https://identifiers.org/mgnify.proj:$1 + MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis. + ERP004492 + false + + + MGnify Project + + None + + + PR000001 + Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC). + false + None + + + ^PR[0-9]{6}$ + + https://identifiers.org/mw.project:$1 + Metabolomics Workbench Project + + + + false + 3D Metabolites + ^B\d{5}$ + https://identifiers.org/3dmet:$1 + + 3DMET is a database collecting three-dimensional structures of natural metabolites. + B00162 + + + + + http://www.3dmet.dna.affrc.go.jp/ + + + + + clinicaltrials + + + ^UCR\d{5}$ + + + false + + UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions. + https://identifiers.org/unipathway.reaction:$1 + UniPathway Reaction + None + UCR00226 + + + + + + PomBase + + + oryzabase.stage + + + + + + myco.tuber + + + + MOLBASE + + + + + false + None + + Span + None + + + http://fungi.ensembl.org/ + false + CADAFLAT00006211 + + ^[A-Z-a-z0-9]+$ + https://identifiers.org/ensembl.fungi:$1 + + + + Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes. + + Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi. + + + + + TFClass + + + + https://gsso.research.cchmc.org/ + + ^GSSO:\d{6}$ + 002368 + + + Gender, Sex, and Sexual Orientation (GSSO) ontology + + false + https://identifiers.org/GSSO:$1 + kronkcj@mail.uc.edu + + The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology. + + + false + None + + The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information. + ENSG00000169174 + + ExAC Gene + ^ENSG\d{11}$ + https://identifiers.org/exac.gene:$1 + + + + + ^\d{4}-\d{3}[\dX]$ + + http://www.issn.org/ + + + + The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books. + International Standard Serial Number + false + 0745-4570 + + + https://identifiers.org/issn:$1 + + + fideo + + + + + + + ricenetdb.compound + + + + tcdb + + + + + pmdb + + + + paul.fabry@usherbrooke.ca + false + The Prescription of Drugs Ontology + An ontology to describe entities related to prescription of drugs + + https://www.ebi.ac.uk/ols/ontologies/pdro/terms?iri=http://purl.obolibrary.org/obo/PDRO_$1 + + + + + https://github.com/OpenLHS/PDRO + + + + co_321:root + + + + go_ref + + + + + + + bindingdb + + + + ma + + + + + tol + + + + helpdesk@cropontology-curationtool.org + false + + Yam ontology + + http://www.cropontology.org/ontology/CO_343/Yam + version 2019 - pvs + https://www.ebi.ac.uk/ols/ontologies/co_343/terms?iri=http://purl.obolibrary.org/obo/CO_343_$1 + + + + false + + + Metabolic Encyclopedia of metabolic and other pathways + CPD-10330 + + http://metacyc.org/ + MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway. + + + ^[A-Za-z0-9+_.%-:]+$ + https://identifiers.org/metacyc.compound:$1 + + + + MRO + + + + + + broad + + + + + tair.locus + + + + + GSSO + + + treefam + + + + + + + cameo + + + https://identifiers.org/dbsnp:$1 + The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms. + false + + + NCBI dbSNP + ^rs\d+$ + + + http://www.ncbi.nlm.nih.gov/projects/SNP + rs121909098 + + + + + + + + viralzone + + + false + + entiminae@gmail.com + Ontology for the Anatomy of the Insect SkeletoMuscular system + https://www.ebi.ac.uk/ols/ontologies/aism/terms?iri=http://purl.obolibrary.org/obo/AISM_$1 + The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research. + + + + https://github.com/insect-morphology/aism + + + + dpv + + + + DEV.GA4GHDOS + + + + + https://identifiers.org/asap:$1 + A Systematic Annotation Package for Community Analysis of Genomes + + + ^[A-Za-z0-9-]+$ + + ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources. + ABE-0009634 + false + + + https://asap.genetics.wisc.edu/asap/ASAP1.htm + + + + STATO + + + + + Human Dephosphorylation Database + + + + The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources. + + PTPN1 + false + None + https://identifiers.org/depod:$1 + + + ^[A-Z0-9]+$ + + + + + KEGG + + + https://identifiers.org/cryptodb:$1 + + CryptoDB + ^\w+ + cgd7_230 + CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + false + None + + + + + + caps + + + + + Wikidata Property + true + false + P683 + https://www.wikidata.org + https://www.wikidata.org/wiki/Property:$1 + An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries. + + true + + + ^\d+$ + https://identifiers.org/pigqtldb:$1 + None + 14 + false + + + + + Animal Genome Pig QTL + The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs. + + + + + panther.node + + + + + PSO + + + ZFIN + + + + + BAO + + + + + + RGD + + + + + GO + + + + + + FMA + + + IntAct Molecule + + https://identifiers.org/intact.molecule:$1 + + + + EBI-366083 + ^EBI\-[0-9]+$ + IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules. + false + None + + + WBBT + + + + + + CGSC + + + + + + tair.protein + + + false + ^\d{7}$ + 0001017 + + https://raw.githubusercontent.com/obophenotype/human-developmental-anatomy-ontology/master/src/ontology/aeo.obo + + + https://www.ebi.ac.uk/ols/ontologies/aeo/terms?iri=http://purl.obolibrary.org/obo/AEO_$1 + J.Bard@ed.ac.uk + Anatomical Entity Ontology + + + https://github.com/obophenotype/human-developmental-anatomy-ontology/ + AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology + + + + + IAO + + + + rex + + + + + + ordo + + + + IDOMAL + + + + + + ncit + + + None + Allotrope Merged Ontology Suite + Allotrope Merged Ontology Suite + false + + https://www.ebi.ac.uk/ols/ontologies/afo/terms?iri=http://purl.obolibrary.org/obo/AFO_$1 + + + + + + + MEROPS + + + + P683 + + + + OlatDv + + + + + + gold.meta + + + + None + Multum MediSource Lexicon + false + 3355 + None + + + + BIOMODELS.VOCABULARY + + + + + PO + + + + + + OTTHUMG00000169812 + https://vega.archive.ensembl.org/index.html + Vertebrate Genome Annotation Database + false + None + + + ^((VGNC|vgnc):)?\d{1,9}$ + VGNC:3792 + Vertebrate Gene Nomenclature Committee + + + http://vertebrate.genenames.org/data/gene-symbol-report/#!/ + false + + The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee. + https://identifiers.org/vgnc:$1 + + + + kegg.drug + + + + + mir + + + + + ccds + + + + + + + BRENDA + + + + + OMP + + + + + HSSP + + + WBbt + + + + + https://pharmacome.github.io/conso/$1 + CONSO00010 + ^CONSO\d{5}$ + false + Curation of Neurodegeneration Supporting Ontology + https://pharmacome.github.io/conso/ + + None + + + + chemspider + + + + + + The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information. + + eff796f3-6195-11e5-8ac5-06603eb7f303 + NCI Pathway Interaction Database: Pathway + https://identifiers.org/pid.pathway:$1 + + false + None + ^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$ + + + + VHOG + + + + ^\d{6}(/\d+\.\d+\.\d+)?$ + https://identifiers.org/dandi:$1 + false + + + DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable). +DANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data. +These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders. + DANDI: Distributed Archives for Neurophysiology Data Integration + None + 000017 + + + + chembl.compound + + + + ENVO + + + + + + RNAmods + + + + Genomics of Drug Sensitivity in Cancer + 1242 + https://identifiers.org/gdsc:$1 + None + The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies. + false + + ^[0-9]+$ + + + + + Web Annotation Ontology + http://www.w3.org/ns/oa#$1 + + None + http://www.w3.org/ns/oa + + false + + + + myco.marinum + + + + + + + mgi + + + FOODB.COMPOUND + + + + + Xenopus Phenotype Ontology + + esegerd3@gmail.com + https://www.ebi.ac.uk/ols/ontologies/xpo/terms?iri=http://purl.obolibrary.org/obo/XPO_$1 + false + + https://github.com/obophenotype/xenopus-phenotype-ontology + + + XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis. + ^\d+$ + 0100002 + + + + + SPD + + + cadsr + + + + + ENCSR163RYW + + The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns. + https://identifiers.org/encode:$1 + + false + None + + + ENCODE: Encyclopedia of DNA Elements + ^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$ + + + + apollo_sv + + + + https://identifiers.org/otl:$1 + AADB12 + + Oryza Tag Line + Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information. + + false + ^A[A-Z]+\d+$ + + + None + + + nmr + + + + + + + agricola + + + + + http://www.wikipathways.org + WikiPathways is a resource providing an open and public collection of pathway maps created and curated by the community in a Wiki like style. +All content is under the Creative Commons Attribution 3.0 Unported license. + WP732 + https://identifiers.org/wikipathways:$1 + false + + + + WP\d{1,5}(\_r\d+)?$ + + WikiPathways + + + + rexo + + + + Symptom Ontology + ^\d{7}$ + http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page + lynn.schriml@gmail.com + + + 0019171 + The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases. + + https://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_$1 + false + + + + + + CST + + + + + ONTONEO + + + + + + + VO + + + + + GSSO + + + CAZY + + + + + + + NAPP + + + The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally. + 5.A.1.1.1 + + ^\d+(\.[A-Z])?(\.\d+)?(\.\d+)?(\.\d+)?$ + + + Transport Protein Database + + false + + https://identifiers.org/tcdb:$1 + https://www.tcdb.org + + + + + EV + + + + + International repository of Adverse Outcome Pathways. + ^\d+$ + false + None + + + + 3 + + https://identifiers.org/aop.events:$1 + AOPWiki (Key Event) + + + https://github.com/carrineblank/MicrO + + + https://www.ebi.ac.uk/ols/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_$1 + carrine.blank@umontana.edu + false + + + Ontology of Prokaryotic Phenotypic and Metabolic Characters + An ontology of prokaryotic phenotypic and metabolic characters + + + + + phytozome.locus + + + An ontology for representing the provenance of scientific claims and the evidence that supports them. + + + https://github.com/monarch-initiative/SEPIO-ontology + Scientific Evidence and Provenance Information Ontology + https://www.ebi.ac.uk/ols/ontologies/sepio/terms?iri=http://purl.obolibrary.org/obo/SEPIO_$1 + false + + + + mhb120@gmail.com + + + + + MESH + + + + + P7718 + + + + + AEO + + + + + fbol + + + MOP + + + + + ApiDB_PlasmoDB + + + + + mirex + + + + + + + UNIGENE + + + + https://identifiers.org/jcggdb:$1 + ^JCGG-STR\d{6}$ + + false + + JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc. + + None + Japan Consortium for Glycobiology and Glycotechnology Database + JCGG-STR008690 + + + + false + DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information. + None + + + DragonDB Protein + AMDEFA + + https://identifiers.org/dragondb.protein:$1 + + ^\w+$ + + + ma + + + + + ^\d+$ + https://identifiers.org/odor:$1 + false + + + + Odor Molecules DataBase + None + 74 + + OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors + + + None + + + Healthcare Common Procedure Coding System + None + + false + + + + Cardiovascular Disease Ontology + https://www.ebi.ac.uk/ols/ontologies/cvdo/terms?iri=http://purl.obolibrary.org/obo/CVDO_$1 + + false + + An ontology to describe entities related to cardiovascular diseases + https://github.com/OpenLHS/CVDO + + + paul.fabry@usherbrooke.ca + + + + http://nematode.lab.nig.ac.jp/ + 6b1 + + ^[A-Za-z0-9]+$ + + NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones. + + + https://identifiers.org/nextdb:$1 + Nematode Expression Pattern DataBase + false + + + + + PDUMDV + + + + + dragondb.dna + + + + + MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies. + false + MTBLS1 + + None + MetaboLights + https://identifiers.org/metabolights:$1 + ^MTBLS\d+$ + + + + + + + genefarm + + + + PCO + + + + + + GlyGen + + + + + TISSUELIST + + + + https://identifiers.org/MIR:$1 + None + + + ^MIR:\d{8}$ + 00100037 + + Identifiers.org Registry + The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or "PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources. + false + + + + + WIKIGENES + + + Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information. + 34 + false + + + ^\d+$ + + None + https://identifiers.org/oryzabase.stage:$1 + Oryzabase Stage + + + + MICRO + + + + + HMDB + + + + + arraymap + + + + + ensembl.plant + + + + + + METANETX.CHEMICAL + + + + + + bacmap.map + + + https://www.ebi.ac.uk/ols/ontologies/covoc/terms?iri=http://purl.obolibrary.org/obo/COVOC_$1 + + false + CoVoc Coronavirus Vocabulary + + The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more. + https://github.com/EBISPOT/covoc + + + + + fbbt + + + + + CORIELL + + + cazy + + + + + + TB2:S1000 + https://identifiers.org/treebase:$1 + false + None + TreeBASE + + + TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc. + + ^TB[1,2]?:[A-Z][a-z]?\d+$ + + + https://www.ebi.ac.uk/ols/ontologies/dpo/terms?iri=http://purl.obolibrary.org/obo/DPO_$1 + An ontology for the description of Drosophila melanogaster phenotypes. + + cp390@cam.ac.uk + false + + + + Drosophila Phenotype Ontology + http://purl.obolibrary.org/obo/fbcv + + + + + CAPS + + + + jstor + + + + + protonet.cluster + + + + ^\S+$ + https://identifiers.org/biolink:$1 + BioLink Model + + A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations. + false + None + + Gene + + + + unite + + + + + hgnc.genegroup + + + + + + seed + + + + + + PubChem_Compound + + + + Ctenophore Ontology + + https://raw.githubusercontent.com/obophenotype/ctenophore-ontology/master/cteno.obo + https://www.ebi.ac.uk/ols/ontologies/cteno/terms?iri=http://purl.obolibrary.org/obo/CTENO_$1 + cjmungall@lbl.gov + 0000047 + ^\d{7}$ + + + An anatomical and developmental ontology for ctenophores (Comb Jellies) + false + + https://github.com/obophenotype/ctenophore-ontology + + + + + xpo + + + pid.pathway + + + + + + + atcvet + + + + APOLLO-SV + + + + + PMCID + + + + + + GTEX + + + + pdb + + + + ^CHEMBL\d+$ + None + ChEMBL + false + + CHEMBL4303805 + https://identifiers.org/chembl:$1 + ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. + + + + + cteno + + + + + viaf + + + + + + biomodels.teddy + + + + HP + + + + + None + false + http://drugcentral.org + http://drugcentral.org/drugcard/$1 + + Drug Central + 307 + + + + + EHDA + + + + false + + UR000124451 + https://www.uniprot.org/unirule/ + + https://www.uniprot.org/unirule/$1 + UniRule + Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites. + + + + pdb + + + + MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. + + MassIVE + + ^MSV\d+$ + false + None + + + + MSV000082131 + + https://identifiers.org/massive:$1 + + + glycopost + + + + + ctd.disease + + + + + + + ARK + + + + + kaggle + + + ML0224 + https://identifiers.org/myco.lepra:$1 + Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information. + + ^ML\w+$ + + + + false + MycoBrowser leprae + None + + + None + + https://identifiers.org/bigg.model:$1 + + + false + iECABU_c1320 + BiGG Model + + ^[a-z_A-Z0-9]+$ + BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models. + + + + + cellosaurus + + + https://identifiers.org/funcbase.human:$1 + ^\d+$ + FuncBase Human + 119514 + Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data. + false + + + + None + + + + + BTO + + + + cst + + + + + ^\d{7}$ + https://raw.githubusercontent.com/obophenotype/biological-spatial-ontology/master/bspo.obo + + https://www.ebi.ac.uk/ols/ontologies/bspo/terms?iri=http://purl.obolibrary.org/obo/BSPO_$1 + An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces + 0000029 + false + + + + Biological Spatial Ontology + cjmungall@lbl.gov + + https://github.com/obophenotype/biological-spatial-ontology + + + proteomicsdb.protein + + + + + 4685 + false + None + The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent. + Animal Genome QTL + + ^\d+$ + https://identifiers.org/qtldb:$1 + + + + ENSEMBL + + + + + + COB + + + + false + BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps. + h_aktPathway + + BioCarta Pathway + + ^([hm]\_)?\w+Pathway$ + + None + https://identifiers.org/biocarta.pathway:$1 + + + + + + ZP + + + cosmic + + + + + + + greengenes + + + + + P2796 + + + None + None + false + + Phenoscape Publication + + + None + Uberon Property + true + None + + + + + APO + + + + + + RS + + + + PB000166 + MassBank + ^[A-Z]{2}[A-Z0-9][0-9]{5}$ + false + + + MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da). + + + https://identifiers.org/massbank:$1 + None + + + LBO + + + + + + BTO + + + + mw.study + + + + + + + clinvar + + + + International Classification of Diseases 11th Revision + None + None + + RA01.0 + false + + + https://identifiers.org/mmp.cat:$1 + None + + MMP743597.11 + ^MMP\d+.\d+$ + MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples. + MarCat + false + + + + + + + + bao + + + UNISTS + + + + + + None + eVOC (Expressed Sequence Annotation for Humans) + + true + evoc@sanbi.ac.za + + http://www.evocontology.org/ + + + + PR + + + + + + gmd + + + Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra. + ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + https://identifiers.org/gmd.gcms:$1 + + None + Golm Metabolome Database GC-MS spectra + 53d583d8-40c6-40e1-9296-23f821cd77a5 + + false + + + + + + + HPM.PROTEIN + + + LINCS.DATA + + + + + TAIR + + + + + + + ma + + + https://bams1.org + Brain Architecture Knowledge Management System Neuroanatomical Ontology + + None + true + + + ricenetdb.compound + + + + + + + taxonomy + + + + + bigg.model + + + + Mungbean ontology + false + https://www.ebi.ac.uk/ols/ontologies/co_346/terms?iri=http://purl.obolibrary.org/obo/CO_346_$1 + + helpdesk@cropontology-curationtool.org + http://www.cropontology.org/ontology/CO_346/Mungbean + oct 2016 + + + ^\d+$ + 141 + None + The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families. + https://identifiers.org/hgnc.genegroup:$1 + false + HGNC Gene Group + + + + + + + ordb + + + P1554 + + + + + + + CDNO + + + + pharmgkb.disease + + + + + https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1 + None + None + false + Genetic Code + + + GA4GHDOS + + + + + false + ST000900 + ^ST[0-9]{6}$ + None + Metabolomics Workbench Study + + Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC). + + + https://identifiers.org/mw.study:$1 + + + + pdb-ccd + + + + + + FB + + + + None + MycoBrowser tuberculosis + + ^Rv\d{4}(A|B|c)?$ + https://identifiers.org/myco.tuber:$1 + Rv1908c + + false + + + Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information. + + + RICENETDB.MIRNA + + + + + + PPO + + + + mp + + + + + + + van_slyke@zfin.org + Zebrafish developmental stages ontology + false + + 0000050 + Developmental stages of the Zebrafish + + ^\d{7}$ + https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources + + https://www.ebi.ac.uk/ols/ontologies/zfs/terms?iri=http://purl.obolibrary.org/obo/ZFS_$1 + + + + intact.molecule + + + + + + cst.ab + + + + + asap + + + + PDB + + + + + https://identifiers.org/euclinicaltrials:$1 + + 2008-005144-16 + + None + + The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004. +It also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population. + EU Clinical Trials + ^\d{4}\-\d{6}\-\d{2}$ + false + + + + + MIRO + + + WIKIDATA_PROPERTY + + + + + + + GMD.ANALYTE + + + + + rfam + + + tcdb + + + + + The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites. + ^EG\d+$ + + + http://ecogene.org + + https://identifiers.org/ecogene:$1 + + false + Database of Escherichia coli Sequence and Function + EG10173 + + + + Enzyme Nomenclature + The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions. + 1.1.1.1 + + ^\d{1,2}(\.\d{0,3}){0,3}$ + + + + + https://identifiers.org/ec-code:$1 + false + https://enzyme.expasy.org/ + + + + matrixdb.association + + + + + + + ATCC + + + + + EMAPA + + + + hogenom + + + + + FOBI + + + + wb + + + + + + + gramene.protein + + + None + + 25782 + + false + + https://identifiers.org/pmap.cutdb:$1 + CutDB + + The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites). + ^\d+$ + + + http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1 + NeuroLex Dysfunction + 20090303 + + None + None + false + + + + KISAO + + + + neuromorpho + + + + + + + antweb + + + + + BOLD.TAXONOMY + + + ZFS + + + + + AOP.RELATIONSHIPS + + + + + DrugCentral + + + + + MICROSPORIDIA + + + + + + false + Minimal Information About Anatomy ontology + None + None + + + http://www.drugbank.ca + + The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information. + ^DB\d{5}$ + DB14938 + false + + https://identifiers.org/drugbank:$1 + + DrugBank + + + + + + HAMAP + + + + + + IDOMAL + + + + + PeroxiBase + + + + https://www.ebi.ac.uk/ols/ontologies/ohmi/terms?iri=http://purl.obolibrary.org/obo/OHMI_$1 + false + yongqunh@med.umich.edu + + + https://github.com/ohmi-ontology/ohmi + + + + Ontology of Host-Microbiome Interactions + OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions. + + + bgee@sib.swiss + This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. + false + + Homology Ontology + + https://github.com/BgeeDB/homology-ontology + + + https://www.ebi.ac.uk/ols/ontologies/hom/terms?iri=http://purl.obolibrary.org/obo/HOM_$1 + + + + Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects. + + ^[A-Za-z0-9\-\/]+$ + https://identifiers.org/licebase:$1 + LiceBase + EMLSAT00000003403 + false + None + + + + + + Genomic Epidemiology Ontology + The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks. + http://genepio.org/ + damion_dooley@sfu.ca + false + + https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_$1 + + + + + + + + P665 + + + + funcbase.human + + + + ^\d+$ + false + None + The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra. + + + Human Proteome Map Peptide + + 9606117 + https://identifiers.org/hpm.peptide:$1 + + + + None + + 00000001 + An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster. + + ^[0-9a-zA-Z]{8}$ + https://identifiers.org/vfb:$1 + Virtual Fly Brain + + false + + + + false + https://github.com/ICO-ontology/ICO + + yongqunh@med.umich.edu + Informed Consent Ontology + The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field. + + + + https://www.ebi.ac.uk/ols/ontologies/ico/terms?iri=http://purl.obolibrary.org/obo/ICO_$1 + + + UniProt + + + + + insdc.gca + + + + + ^\d{1,5}$ + Molecular Modeling Database + None + 50885 + https://identifiers.org/mmdb:$1 + + + false + + + The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites. + + + macie + + + + + insdc + + + + + + + niaEST + + + resid + + + + + + + PCO + + + ncro + + + + + None + None + true + + Gemina Symptom Ontology Identifier + + + + + aspgd.locus + + + MDM + + + + + + + OVAE + + + + https://identifiers.org/sabiork.kineticrecord:$1 + + ^\d+$ + false + + + + http://sabio.villa-bosch.de/ + 5046 + SABIO Reaction Kinetics + SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information. + + + false + + + + C0026339 + NCI Metathesaurus + ^C\d+$ + https://identifiers.org/ncim:$1 + NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical. + None + + + + phenolexplorer + + + + + ligandexpo + + + + + + p.buttigieg@gmail.com + + + + ^ENVO:\d{7,8}$ + 09200010 + + https://identifiers.org/ENVO:$1 + The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations. + + + false + http://environmentontology.org/ + Environment Ontology + + + None + Observational Medical Outcomes Partnership + false + https://www.ohdsi.org/data-standardization/the-common-data-model/ + + + + GR_GENE + + + + + + + NBO + + + (^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$)|(^REACT_\d+(\.\d+)?$) + R-BTA-418592 + false + + Reactome - a curated knowledgebase of biological pathways + + + + https://identifiers.org/reactome:$1 + + + https://www.reactome.org/ + + The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology. + + + + + mgnify.proj + + + NASC + + + + + + BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity. + 131392 + Bacterial Diversity Metadatabase + https://identifiers.org/bacdive:$1 + false + + + ^[0-9]+$ + None + + + + FIDEO + + + + + + + http://purl.obolibrary.org/obo/gaz.obo + + 00620027 + http://environmentontology.github.io/gaz/ + false + Gazetteer + + ^\d{8}$ + + A gazetteer constructed on ontological principles + https://www.ebi.ac.uk/ols/ontologies/gaz/terms?iri=http://purl.obolibrary.org/obo/GAZ_$1 + lschriml@som.umaryland.edu + + + Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species. + + + + false + None + + ^(ENSFM|ENSGTV:)\d+$ + Bgee family + https://identifiers.org/bgee.family:$1 + ENSFM00500000270089 + + + false + None + + https://identifiers.org/cst.ab:$1 + + 3305 + + Cell Signaling Technology Antibody + ^\d+$ + + Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products. + + + hgnc + + + + + TIGRFAM + + + + + false + http://bioassayontology.org + + + https://identifiers.org/bao:$1 + + BioAssay Ontology + + + The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. + 0002989 + ^\d{7}$ + + + + + + CLO + + + + + giardiadb + + + + WORMS + + + + + + OGMS + + + 1801.012 + + + false + None + + The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001). + + https://identifiers.org/ascl:$1 + ^[0-9\.]+$ + Astrophysics Source Code Library + + + MMUSDV + + + + + + + OMIABIS + + + + Melanoma Molecular Map Project Biomaps + https://identifiers.org/mmmp:biomaps:$1 + A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma. + ^\d+$ + + None + 37 + + + false + + + + mw.project + + + + https://github.com/evidenceontology/evidenceontology/ + + https://identifiers.org/ECO:$1 + + ECO:\d{7}$ + + mgiglio@som.umaryland.edu + Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity. + 0007807 + Evidence ontology + false + + + + + + + + metacyc.reaction + + + + + MFMO + + + + + intact.molecule + + + + + CHEMDB + + + + + https://www.ncbi.nlm.nih.gov/nlmcatalog/$1 + 101775319 + National Library of Medicine (NLM) Catalog + None + false + + + None + + + ATCVET + + + + + + + cdpd + + + + + pfam + + + BILA + + + + + SUPFAM + + + + + + + scretf + + + + gwascentral.marker + + + + dct + + + + + + + opb + + + ARO + + + + + + meddra + + + + + + kegg.disease + + + + + LIPIDBANK + + + + + BIOCATALOGUE.SERVICE + + + + P938 + + + + 221058 + + ^[0-9]{1,7}$ + None + + https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1 + + RxNorm + None + + + false + + + + + GRIN + + + + + CPC + + + + DRUGBANK.TARGET + + + + + REPRODUCE-ME + + + + opm + + + + + + + AISM + + + + MultiCellDS Digital snapshot + MCDS_S_0000000001 + false + None + + + + ^MCDS_S_[a-zA-Z0-9]{1,10}$ + https://identifiers.org/multicellds.snapshot:$1 + MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data. + + + + + GLYCOMEDB + + + Bactibase: a database dedicated to bacteriocins + + None + http://bactibase.hammamilab.org/$1 + false + http://bactibase.hammamilab.org + BAC045 + + + + WIKIDATA + + + + + + pubchem.compound + + + + BFO + + + + begdb + + + + + + ncim + + + + + + BioCyc + + + FungiDB + false + https://identifiers.org/fungidb:$1 + + + + ^[A-Za-z_0-9]+$ + + None + FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina. + CNBG_0001 + + + GlyTouCan + + https://identifiers.org/glytoucan:$1 + + G00054MO + GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data. + + None + ^G[0-9]{5}[A-Z]{2}$ + + false + + + eco + + + + + + + LOINC + + + + RGD + + + + + SWISSREGULON + + + + false + ^TF\w+$ + The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors. + + Pazar Transcription Factor + None + TF0001053 + + + + https://identifiers.org/pazar:$1 + + + + + ardb + + + helpdesk@cropontology-curationtool.org + Wheat ontology + http://www.cropontology.org/ontology/CO_321:ROOT/Wheat + false + + T3 Wheat traits + + https://www.ebi.ac.uk/ols/ontologies/co_321:root/terms?iri=http://purl.obolibrary.org/obo/CO_321:ROOT_$1 + + + + refseq + + + + https://genome.ucsc.edu/ + None + uc001rvw.5 + + + false + UCSC Genome Browser + + + + + + 1000003 + + http://msi-ontology.sourceforge.net/ + NMR-instrument specific component of metabolomics investigations + + + https://nmrml.org/cv/stable/nmrCV.owl + schober@imbi.uni-freiburg.de + true + + https://identifiers.org/NMR:$1 + + nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi. + + ^NMR:\d+$ + + + + CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession. + + false + None + + CharProt + + https://identifiers.org/charprot:$1 + ^CH_\d+$ + CH_001923 + + + POCKETOME + + + + + + foodb.compound + + + + GEXO + + + + + CMO + + + + + foodb.compound + + + + + + FUNGIDB + + + + + zp + + + + CLINVAR.RECORD + + + + + + + mirtarbase + + + RiceNetDB Compound + https://identifiers.org/ricenetdb.compound:$1 + ^OSC\d{4}$ + + + RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. + None + false + + + OSC1416 + + + + OGSF + + + + + Pfam + + + + + + ^[A-Za-z_0-9]+ + false + Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries. + + 1433C_TOBAC_1_252 + + Pocketome + None + https://identifiers.org/pocketome:$1 + + + Datanator Metabolite + OUYCCCASQSFEME-MRVPVSSYSA-N + + None + Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms. + https://identifiers.org/datanator.metabolite:$1 + + + ^[A-Z\-]+$ + false + + + + + maizegdb.locus + + + + + odor + + + + CMPO + + + + biocatalogue.service + + + + + + http://www.semantic-systems-biology.org/apo + + Gene Expression Ontology + vladimir.n.mironov@gmail.com + https://www.ebi.ac.uk/ols/ontologies/gexo/terms?iri=http://purl.obolibrary.org/obo/GEXO_$1 + + Gene Expression Ontology + false + + + + + edam + + + PRINTS + + + + + XLMOD + + + + + + + dommino + + + + + ZFIN + + + + protonet.cluster + + + + DATF + + + + + GenBank + + + + + + vto + + + + + + KEGG.MODULE + + + false + + https://identifiers.org/ngl:$1 + + + GLDS-141 + ^GLDS-\d+$ + NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA. + + None + NASA GeneLab + + + + + CARO + + + + pride.project + + + + + + COMBINE.SPECIFICATIONS + + + OMO + + + + + hinv.transcript + + + + + false + YMDB00001 + None + http://www.ymdb.ca/compounds/$1 + Yeast Metabolome Database + ^YMDB\d+$ + + None + + + SIDER.DRUG + + + + + None + Google Scholar Researcher ID + + false + None + + + + + + ENSEMBL + + + https://identifiers.org/biotools:$1 + + BioTools + None + uniprotkb + + + Tool and data services registry. + false + ^[A-Za-z0-9\_]*$ + + + + cvdo + + + + + RGD.QTL + + + + + + topdb + + + + + + ncim + + + + glycoepitope + + + + 1001 + http://repository.topdownproteomics.org/proteoforms/$1 + ^\d+$ + false + Proteoform Atlas + + None + None + + + P661 + + + + + + FLOPO + + + + + dictyBase + + + + + TGD + + + + + + antweb + + + + feature + http://rdfs.org/ns/void#$1 + http://vocab.deri.ie/void + + Vocabulary of Interlinked Datasets + None + false + + + uniprot.isoform + + + + + + + ORIDB.SCHIZO + + + CHEMBL.COMPOUND + + + + + + balhoff@renci.org + https://www.ebi.ac.uk/ols/ontologies/vto/terms?iri=http://purl.obolibrary.org/obo/VTO_$1 + Comprehensive hierarchy of extinct and extant vertebrate taxa. + Vertebrate Taxonomy Ontology + + false + + 9008500 + + ^\d{7}$ + https://github.com/phenoscape/vertebrate-taxonomy-ontology + + + + + + chemidplus + + + https://identifiers.org/bigg.reaction:$1 + BiGG Reaction + + ^[a-z_A-Z0-9]+$ + false + None + + + BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions. + + 13GS + + + Core Ontology for Biology and Biomedicine + + + https://github.com/OBOFoundry/COB + bpeters@lji.org + COB brings together key terms from a wide range of OBO projects to improve interoperability. + false + + https://www.ebi.ac.uk/ols/ontologies/cob/terms?iri=http://purl.obolibrary.org/obo/COB_$1 + + + + + gold + + + + IDO + + + + + UniRule + + + + + + + ecoliwiki + + + None + + ^PGS[0-9]{6}$ + PGS000018 + Polygenic Score Catalog + https://identifiers.org/pgs:$1 + false + + The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation. + + + + biosample + + + + + + PSDO + + + + + NextDB + + + Terminologia Embryologica + E5.11.2.0.0.0.4 + None + false + None + + + + + MCO + + + + + + + ECTO + + + chebi + + + + + RS + + + + + + + bykdb + + + + + PathwayCommons + + + funcbase.mouse + + + + + apid.interactions + + + + + morpheus + + + + + + ^\d{7}$ + + 0000171 + Zebrafish Experimental Conditions Ontology + false + + ybradford@zfin.org + None + https://www.ebi.ac.uk/ols/ontologies/zeco/terms?iri=http://purl.obolibrary.org/obo/ZECO_$1 + https://github.com/ybradford/zebrafish-experimental-conditions-ontology + + + + + GEO + + + + + + + snp2tfbs + + + epd + + + + + + neurondb + + + + + + MedGen + + + ^\d+$ + The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion. + + + false + None + + 051 + Protein Structural Change Database + + https://identifiers.org/pscdb:$1 + + + + ido + + + + PIRSF + + + + + + sider.drug + + + + false + https://asrp.danforthcenter.org/ + Arabidopsis Small RNA Project + + None + ASRP1423 + + + None + + + KEGG Drug + https://identifiers.org/kegg.drug:$1 + ^D\d+$ + + D00123 + KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules. + + + + false + + + + + ^\d+$ + false + None + + 1398574 + DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes. + https://identifiers.org/door:$1 + + Database for Prokaryotic Operons + + + + + PX + + + metanetx.reaction + + + + + PHARMGKB + + + + + + + minid + + + SWISSLIPID + + + + + + + https://identifiers.org/refseq:$1 + + Reference Sequence Collection + + ^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$ + NP_012345 + The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products. + false + + http://www.ncbi.nlm.nih.gov/RefSeq/ + + + + + + TreeFam + + + + + XPO + + + The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals. + + + ^MINT\-\d{1,7}$ + + + + false + None + MINT-10000 + Molecular Interaction Database + https://identifiers.org/mint:$1 + + + + + runbiosimulations + + + + The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc. + + https://github.com/OAE-ontology/OAE/ + + https://www.ebi.ac.uk/ols/ontologies/oae/terms?iri=http://purl.obolibrary.org/obo/OAE_$1 + yongqunh@med.umich.edu + + + false + Ontology of Adverse Events + + + + + BGEE.STAGE + + + PLANA + + + + + EHDAA2 + + + + + + EUPATH + + + + + Araport + + + + + + NCRO + + + spp + + + + + false + https://www.ebi.ac.uk/ols/ontologies/hpath/terms?iri=http://purl.obolibrary.org/obo/HPATH_$1 + Histopathology Ontology + + An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species. + https://github.com/Novartis/hpath + + + + + iuphar.family + + + + ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier. + + ^\d+$ + ClinVar Variant + 12345 + https://identifiers.org/clinvar:$1 + + false + None + + + + + + + OARCS + + + BEETLEBASE + + + + + + CTENO + + + + + EHDA + + + + + + pocketome + + + + + 277.9 + + + International Classification of Diseases 9th Revision + false + None + None + + + + UBERON + + + + vipr + + + + + POLBASE + + + + + + apd + + + + + + P7963 + + + ^\d+$ + 00001234 + NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information. + + + https://identifiers.org/nbrc:$1 + false + + + + NITE Biological Resource Center + http://www.nbrc.nite.go.jp/e/catalog-e.html + + + + + hp + + + + OMIM + + + + ido + + + + + + RRID + + + + + KEGG.ENZYME + + + + + + uniparc + + + + + tair.gene + + + + preets79@gmail.com + + + https://github.com/OPL-ontology/OPL + https://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_$1 + false + + + The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium. + Ontology for Parasite LifeCycle + + + mmp.ref + + + + + + + jstor + + + + ORPHANET.ORDO + + + + + + ZFA + + + + MCCL + + + + 10087 + Chicken Gene Nomenclature Consortium + http://birdgenenames.org/cgnc/ + http://birdgenenames.org/cgnc/GeneReport?id=$1 + false + + None + + + + BioCyc + + + + + + ^[CD]\d+$ + false + None + + https://identifiers.org/ctd.chemical:$1 + + D001151 + + The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. + CTD Chemical + + + + ^[0-9][A-Za-z0-9]{3}$ + false + None + + + + 1a05 + https://identifiers.org/csa:$1 + The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme. + Catalytic Site Atlas + + + + https://identifiers.org/gold:$1 + ^[A-Z][a-z][0-9]+$ + false + + Genomes Online Database + Gs0000008 + + None + The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. + + + beetlebase + + + + + hinv.transcript + + + + + + + VO + + + orphanet.ordo + + + + + + + M9861/3 + The International Classification of Diseases for Oncology + + None + false + None + + + cryptodb + + + + + + mpath + + + + + + SCRETF + + + + + MIAPA + + + insdc + + + + + + + BIOMINDER + + + + + WBls + + + + + Cube db + false + + None + + AKR + Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available. + https://identifiers.org/cubedb:$1 + ^[A-Za-z_0-9]+$ + + + P591 + + + + + Castor bean ontology + + false + + March 2017 version + helpdesk@cropontology-curationtool.org + https://www.ebi.ac.uk/ols/ontologies/co_347/terms?iri=http://purl.obolibrary.org/obo/CO_347_$1 + http://www.cropontology.org/ontology/CO_347/Castor%20bean + + + MASSIVE + + + + + TOPFIND + + + + + + + cob + + + None + ae8c77fe-e6c8-44d5-8265-4a38c637bbef + https://identifiers.org/gdc:$1 + + The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis. + + false + + + ^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$ + Genomic Data Commons Data Portal + + + ^\d{7}$ + https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo + Molecular Process Ontology + + https://www.ebi.ac.uk/ols/ontologies/mop/terms?iri=http://purl.obolibrary.org/obo/MOP_$1 + 0000079 + false + + https://github.com/rsc-ontologies/rxno + batchelorc@rsc.org + + MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation. + + + + + + + allergome + + + + None + http://www.w3.org/2000/01/rdf-schema#$1 + false + + label + + RDF Schema + https://www.w3.org/TR/rdf-schema/ + + + + + brenda + + + + + PCO + + + + + MAMO + + + + + peptideatlas.dataset + + + https://identifiers.org/covid19:$1 + ^\w+_COVID19_[-\w]+$ + + + Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease. + SFB_COVID19_MW286762 + false + None + + COVID-19 Ontology + + + YDPM + + + + + + + EnsemblBacteria + + + dbSNP + + + + + + ^(ev\:)?E\d+$ + KEGG Environ + KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable. + false + + None + ev:E00032 + + + + https://identifiers.org/kegg.environ:$1 + + + Rebuilding a Kidney + false + + + None + (Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function. + https://identifiers.org/rbk:$1 + + + ^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$ + Q-2958 + + + The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found. + None + + + CUT + + Animal TFDB Family + false + ^\w+$ + https://identifiers.org/atfdb.family:$1 + + + + + + SGD + + + + mirnest + + + + + + IDOMAL + + + WBls + + + + + + plana + + + + SBO + + + + + Minimal Viable Identifier + Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. + + b97957 + false + None + + + + https://identifiers.org/minid:$1 + ^[A-Za-z0-9]+$ + + + mgi + + + + + cath.domain + + + + + + + PDB.LIGAND + + + lbo + + + + + atcc + + + + + + + doid + + + hpa + + + + + pdumdv + + + + + + + sider.drug + + + + + ZECO + + + + + ensembl.bacteria + + + + + pubmed + + + + + bigg.compartment + + + https://lincs.hms.harvard.edu/db/sm/$1 + false + None + 10001-101 + + None + HMS LINCS Compound + + + + + + + ^OPB_\d+$ + None + + The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms. + Ontology of Physics for Biology + https://identifiers.org/opb:$1 + false + OPB_00573 + + + + + GECKO + + + + + MF + + + hpm.peptide + + + + + + EGA.DATASET + + + + UO + + + + + + glida.ligand + + + + ARO + + + + + Apollo Structured Vocabulary + MBrochhausen@uams.edu + https://www.ebi.ac.uk/ols/ontologies/apollo_sv/terms?iri=http://purl.obolibrary.org/obo/APOLLO_SV_$1 + false + https://github.com/ApolloDev/apollo-sv + + + Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models + + + + + + + pina + + + prodom + + + + + + + pina + + + GMD + + + + + VO + + + + + None + ^\w+$ + + + MIPModDB + + + https://identifiers.org/mipmod:$1 + HOSAPI0399 + MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures. + false + + + datf + + + + + + + + mah79@cam.ac.uk + false + https://github.com/obophenotype/fungal-anatomy-ontology/ + + ^\d{7}$ + + A structured controlled vocabulary for the anatomy of fungi. + Fungal gross anatomy + 0000001 + https://www.ebi.ac.uk/ols/ontologies/fao/terms?iri=http://purl.obolibrary.org/obo/FAO_$1 + + + + + tair.gene + + + + RGD + + + + + + OMIA + + + None + OMA Group + ^[A-Z]+$ + LCSCCPN + + https://identifiers.org/oma.grp:$1 + + + + OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs. + false + + + + + eu89h + + + + miriam.resource + + + + + DTO + + + + + ^\d+$ + + + HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes. + + HomoloGene + + false + None + https://identifiers.org/homologene:$1 + 1000 + + + Chickpea ontology + helpdesk@cropontology-curationtool.org + + + http://www.cropontology.org/ontology/CO_338/Chickpea + Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015 + https://www.ebi.ac.uk/ols/ontologies/co_338/terms?iri=http://purl.obolibrary.org/obo/CO_338_$1 + false + + + ideal + + + + + + + pgs + + + + + Software ontology + https://github.com/allysonlister/swo + 0000144 + https://github.com/allysonlister/swo/raw/master/release/swo.owl + allyson.lister@oerc.ox.ac.uk + false + + + + ^\d{7}$ + The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community. + https://www.ebi.ac.uk/ols/ontologies/swo/terms?iri=http://purl.obolibrary.org/obo/SWO_$1 + + + + CRO + + + + Virus Pathogen Resource + ^[A-Za-z 0-9]+$ + The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information. + BeAn 70563 + false + + + + https://identifiers.org/vipr:$1 + + http://www.viprbrc.org/brc/home.do?decorator=vipr + + + + false + None + + + ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters. + O80725 + ^\w+$ + ProtClustDB + + https://identifiers.org/protclustdb:$1 + + + + + + + ^\d{7}$ + 0000509 + + https://github.com/obophenotype/sibo + false + + Social Insect Behavior Ontology + Social Behavior in insects + https://www.ebi.ac.uk/ols/ontologies/sibo/terms?iri=http://purl.obolibrary.org/obo/SIBO_$1 + cjmungall@lbl.gov + + + mim + + + + + JAX + + + + + + l.andres.hernandez.18@student.scu.edu.au + None + Compositional Dietary Nutrition Ontology + + false + + https://www.ebi.ac.uk/ols/ontologies/cdno/terms?iri=http://purl.obolibrary.org/obo/CDNO_$1 + https://github.com/Southern-Cross-Plant-Science/cdno + + + antibodyregistry + + + + + + CHEMIDPLUS + + + + ^\d+$ + https://identifiers.org/tol:$1 + 98034 + + The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). + +Each page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things. + Tree of Life + + false + + None + + + + false + None + The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components. + ^P\d{5}$ + + https://identifiers.org/panther.pathway:$1 + P00024 + + + + PANTHER Pathway + + + + + https://www.rhea-db.org + 12345 + ^\d{5}$ + false + + + + https://identifiers.org/rhea:$1 + Rhea, the Annotated Reactions Database + Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants. + +Rhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB. + + + + XCO + + + + HINV.PROTEIN + + + + + UO + + + + + https://identifiers.org/orthodb:$1 + ^\w+$ + + + false + + + + OrthoDB + None + OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups + Q9P0K8 + + + 4685 + ^\d+$ + false + + The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs. + + Animal Genome Cattle QTL + https://identifiers.org/cattleqtldb:$1 + + None + + + + rnacentral + + + + + + HSO + + + + None + + 1017 + + + The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI. + ^\d+$ + false + Gene Wiki + https://identifiers.org/genewiki:$1 + + + + + + + psimi + + + + + PharmGKB + + + LDS-1110 + The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level). + + https://identifiers.org/lincs.data:$1 + None + + + false + + ^[EL]D[SG]-\d+$ + LINCS Data + + + INSDC.GCA + + + + + + + BOLD + + + + https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm + 2404 + None + https://sitem.herts.ac.uk/aeru/bpdb/index.htm + false + Bio-Pesticides DataBase + + + + KEGG.DRUG + + + + OMIT + + + + + img.taxon + + + + + + + SABIORK.REACTION + + + + dictybase.est + + + + + upheno + + + + + REBASE + + + + pkdb + + + + + + clinvar.submitter + + + + TREEBASE + + + + + P3519 + + + + + + TTO + + + + None + Chemical Component Dictionary + ^\w{3}$ + + The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names. + AB0 + + false + https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1 + + + + + + apo + + + + + RNAO + + + + + + dbd + + + GMD.GCMS + + + + + + + JCGGDB + + + vfb + + + + + https://identifiers.org/dashr.expression:$1 + ^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$ + false + + DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression. + + None + + hsa-mir-200a + + DASHR expression + + + OGSF + + + + + atc + + + + + + P638 + + + + https://www.ebi.ac.uk/ols/ontologies/co_350/terms?iri=http://purl.obolibrary.org/obo/CO_350_$1 + + false + http://www.cropontology.org/ontology/CO_350/Oat + + Oat ontology + Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo + helpdesk@cropontology-curationtool.org + + + + + tair.protein + + + + FBbt + + + + + + FUNCBASE.FLY + + + + ^\d{5}$ + + + false + PhosphoSite Protein + None + + 12300 + https://identifiers.org/phosphosite.protein:$1 + PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database. + + + DBEST + + + + + VHOG + + + + + + + OBI + + + + + + ^\w+$ + false + GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links. + G77500AY + + None + https://identifiers.org/glycomedb:$1 + GlycomeDB + + + EFO + + + + + combine.specifications + + + + + arraymap + + + + + + + co_347 + + + National Center for Biotechnology Information Registry + ECOCYC + + A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources + true + false + false + https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/ + + + + ecyano.entity + + + + CMO + + + + + GALEN + + + + + + PAXDB.PROTEIN + + + + + UBERON + + + + FOODON + + + + + + + SAO + + + None + https://abrc.osu.edu/stocks/number/SALK_$1 + false + + None + 037727 + Salk Institute for Biological Studies Accession + + + MIAPA Ontology + + + + https://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_$1 + false + http://www.evoio.org/wiki/MIAPA + + + hilmar.lapp@duke.edu + The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies. + +This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA. + + + + http://co.mbine.org/standards/kisao + + The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment. + biomodels-net-support@lists.sf.net + false + Kinetic Simulation Algorithm Ontology + + + ^KISAO_\d+$ + + https://identifiers.org/biomodels.kisao:$1 + KISAO_0000057 + + + + + + MINID + + + + + CLO + + + + + + PIROPLASMA + + + medgen + + + + + + + noncodev3 + + + + lincs.smallmolecule + + + + Xenbase + + + + + + + mmdb + + + MI + + + + + MEDLINEPLUS + + + + + + MICRO + + + + + + mod + + + SRS086444 + false + + MGnify Sample + + https://identifiers.org/mgnify.samp:$1 + + None + The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples. + ^[A-Z]+[0-9]+$ + + + UPHENO + + + + + http://anobase.vectorbase.org + false + + + + ^\d{8}$ + + 40000617 + Mosquito insecticide resistance + louis@imbb.forth.gr + + http://purl.obolibrary.org/obo/miro.obo + https://www.ebi.ac.uk/ols/ontologies/miro/terms?iri=http://purl.obolibrary.org/obo/MIRO_$1 + Application ontology for entities related to insecticide resistance in mosquitos + + + + MIRBASE.MATURE + + + + dbg2introns + + + + + ACEVIEW.WORM + + + + + phosphopoint.protein + + + + + + + ASAP + + + The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information. + + + DDB0016567 + + false + dictyBase Expressed Sequence Tag + ^DDB\d+$ + https://identifiers.org/dictybase.est:$1 + + + None + + + orcid + + + + + + IntAct + + + + DICTYBASE.EST + + + + + + oba + + + + + EHDAA + + + + Greengenes + + + + + + ^[A-Z0-9]{6,7}$ + + false + None + M77F7JM + DOULIX lab-tested standard biological parts, in this case, full length constructs. + + https://identifiers.org/dlxc:$1 + Circular double stranded DNA sequences composed + + + 9781584885658 + https://identifiers.org/isbn:$1 + https://www.worldcat.org + The International Standard Book Number (ISBN) is for identifying printed books. + false + + + ^(ISBN)?(-13|-10)?[:]?[ ]?(\d{2,3}[ -]?)?\d{1,5}[ -]?\d{1,7}[ -]?\d{1,6}[ -]?(\d|X)$ + + + + International Standard Book Number + + + + RICEGAP + + + + + + + ensembl.fungi + + + wikipathways + + + + + + + ComplexPortal + + + umbbd.pathway + + + + + + https://identifiers.org/genefarm:$1 + GeneFarm + None + 4892 + GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products. + + ^\d+$ + + + false + + + Fission Yeast Phenotype Ontology + ^\d{7}$ + https://www.ebi.ac.uk/ols/ontologies/fypo/terms?iri=http://purl.obolibrary.org/obo/FYPO_$1 + A formal ontology of phenotypes observed in fission yeast. + + https://github.com/pombase/fypo + + 0001707 + + mah79@cam.ac.uk + + http://purl.obolibrary.org/obo/fypo.obo + + + false + + + chiro + + + + + + + tissuelist + + + + BIOGRID + + + + + rgd.qtl + + + + GOA + + + + + NONCODEV3 + + + + + HUGE + + + + + + false + smr@stowers.org + Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea. + + https://github.com/obophenotype/planarian-phenotype-ontology + ^\d+$ + https://www.ebi.ac.uk/ols/ontologies/planp/terms?iri=http://purl.obolibrary.org/obo/PLANP_$1 + + 0000001 + + Planarian Phenotype Ontology + + + + mmp.ref + + + + + + WIKIPATHWAYS + + + + VGNC + + + + + + ilx + + + insdc.sra + + + + + uberon + + + + + + intact + + + + VARIO + + + + + + ^InChI\=1S?\/[A-Za-z0-9\.]+(\+[0-9]+)?(\/[cnpqbtmsih][A-Za-z0-9\-\+\(\)\,\/\?\;\.]+)*$ + + InChI + false + InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 + + + https://identifiers.org/inchi:$1 + None + + The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier. + + + + + kegg.reaction + + + + dbsnp + + + + + peptideatlas.dataset + + + + + + myco.lepra + + + OID Repository + 2.16.840 + ^[\d.]+$ + + + https://identifiers.org/oid:$1 + false + None + + OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes. + + + odc.tbi + + + + + eu89h + + + + + + ascl + + + + psipar + + + + + swh + + + + + + + DrugBank + + + + + XAO + + + IMEX + + + + + SEPIO + + + + + + ecao + + + + + + reto + + + NCRO + + + + + P2158 + + + + + + + TOXOPLASMA + + + + + AMPHX + + + Collembola Anatomy Ontology + false + + lagonzalezmo@unal.edu.co + https://github.com/luis-gonzalez-m/Collembola + + + + https://www.ebi.ac.uk/ols/ontologies/clao/terms?iri=http://purl.obolibrary.org/obo/CLAO_$1 + CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda). + + + + cmpo + + + + + + drugbank + + + HOGENOM + + + + + + + dictybase.gene + + + + + ORYZABASE.STAGE + + + + + scop + + + psipar + + + + + clinvar.submission + + + + + The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene. + ABL1 + false + + + GeneCards + https://identifiers.org/genecards:$1 + + + ^[A-Za-z-0-9_]+(\@)?$ + None + + + + ark + + + + + + rnao + + + + + UBERON + + + + + MP + + + + + BIOSYSTEMS + + + + PDRO + + + + + void + + + + + https://identifiers.org/oryzabase.reference:$1 + + 42840 + + The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan. + Oryzabase Reference + ^\d+$ + false + None + + + + + + ICEberg family + https://identifiers.org/iceberg.family:$1 + 1 + + + ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families. + ^\d+$ + false + None + + + + homd.taxon + + + + OMA.GRP + + + + + false + Genetic Testing Registry + + https://www.ncbi.nlm.nih.gov/gtr/ + None + AN0097748 + + + http://www.cropontology.org/ontology/CO_356/Vitis + false + Grape Ontology including OIV and bioversity descriptors. INRAE Jan 2021 + + helpdesk@cropontology-curationtool.org + + Vitis ontology + https://www.ebi.ac.uk/ols/ontologies/co_356/terms?iri=http://purl.obolibrary.org/obo/CO_356_$1 + + + + csd + + + + + + iuphar.receptor + + + cp390@cam.ac.uk + false + + An ontology of Drosophila melanogaster developmental stages. + ^\d{8}$ + Drosophila development + 00000000 + + http://purl.obolibrary.org/obo/fbdv + https://www.ebi.ac.uk/ols/ontologies/fbdv/terms?iri=http://purl.obolibrary.org/obo/FBDV_$1 + + + + + + + + goa + + + metabolights + + + + + + + iao + + + + P4926 + + + + + + TGMA + + + grsdb + + + + + + + P5458 + + + unipathway.compound + + + + + + imgt.hla + + + + + + lipidmaps + + + ORYZABASE.STRAIN + + + + + + dip + + + + + nasc + + + + + genprop + + + + + isbn + + + + MIRNEST + + + + + + + BIOCARTA.PATHWAY + + + + + CHEBI + + + + + oclc + + + flowrepository + + + + + + CLYH + + + + + + P594 + + + Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s). + IRD Segment Sequence + + https://identifiers.org/ird.segment:$1 + CY077097 + false + + + None + ^\w+(\_)?\d+(\.\d+)?$ + + + + + rouge + + + + SWO + + + + + + + GECKO + + + + + SitEx + + ^\d+$ + false + None + SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments. + + https://identifiers.org/sitex:$1 + 1000 + + + + + GRSDB + + + + virsirna + + + + PhylomeDB + + + + + + + BIGG.METABOLITE + + + + + WORMPEP + + + None + + false + None + Disease Class + https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo + + + 0000598 + + + European Paediatric Cardiac Codes + false + None + + None + + + + gramene.taxonomy + + + + + + umbbd.compound + + + + Arabidopsis Information Portal + + https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1 + None + AT1G01010 + false + https://www.araport.org/ + + + + MATRIXDB.ASSOCIATION + + + + + + + IMGT_HLA + + + None + CATH Protein Structural Domain Superfamily + + + 1.10.8.10 + false + CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence. + + https://identifiers.org/cath:$1 + ^[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$ + + + + + + PUBCHEM.BIOASSAY + + + eupath + + + + + massive + + + + + ppo + + + + + PSI-MI + + + + + CHEMINF + + + + + + + RHEA + + + CUBEDB + + + + + lrg + + + + + MPATH + + + + + + KEGG_REACTION + + + + + + cattleqtldb + + + + + Genetic and Rare Diseases Information Center + None + 6038 + false + None + + + + EPD + + + + IUPHAR.RECEPTOR + + + + + OMA.PROTEIN + + + + + + hprd + + + + + NOMEN + + + + Regulation of Gene Expression + http://www.semantic-systems-biology.org/apo + https://www.ebi.ac.uk/ols/ontologies/rexo/terms?iri=http://purl.obolibrary.org/obo/REXO_$1 + vladimir.n.mironov@gmail.com + + + + false + Regulation of Gene Expression Ontology + + + + MF + + + + + + unigene + + + Gmelins Handbuch der anorganischen Chemie + None + + None + false + 1466 + + ^[1-9][0-9]{3,6}$ + + + + MRO + + + + + + norine + + + ncbigene + + + + + + PECO + + + + INO + + + + + + + spike.map + + + + + Prosite + + + UMBBD.COMPOUND + + + + + isni + + + + + + dcat + + + + + + PHARMGKB.DRUG + + + + + co_359 + + + seed.compound + + + + + obi + + + + + + + CARO + + + CEPH + + + + + hp + + + + + nextprot + + + + + lei + + + + + + ncbitaxon + + + + + DIDEO + + + + Mouse Developmental Anatomy Ontology + + http://www.informatics.jax.org/expression.shtml + https://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_$1 + + + + + An ontology for mouse anatomy covering embryonic development and postnatal stages. + Terry.Hayamizu@jax.org + + ^\d+$ + false + 26753 + + + + phosphosite.protein + + + + + + NBN + + + None + false + NameRXN + + None + + + oma.protein + + + + + + + EMDB + + + ^[0-9]+$ + + + http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology + + false + + + Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases. + Lindsay.Cowell@utsouthwestern.edu + https://identifiers.org/ido:$1 + 0000504 + + Infectious Disease Ontology + + + + + + PR + + + + + WorfDB + + + + + GABI + + + + + broad + + + stap + + + + + iao + + + + + + + bgee.family + + + + MFOEM + + + + + UPA + + + + viralzone + + + + + opm + + + + + contact@fairsharing.org + https://github.com/FAIRsharing/subject-ontology + + false + + The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies. + FAIRsharing Subject Ontology + https://www.ebi.ac.uk/ols/ontologies/srao/terms?iri=http://purl.obolibrary.org/obo/SRAO_$1 + + + + crisprdb + + + + EcoGene + + + + + + + ricenetdb.reaction + + + + + issn + + + + NIAEST + + + + EPD + + + + + DBGAP + + + + + None + + + https://identifiers.org/tair.gene:$1 + The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus. + Gene:2200934 + ^Gene:\d{7}$ + + TAIR Gene + + false + + + + + bgee.family + + + + DOID + + + + + taxrank + + + + + Reactome + + + + GeneDB + + + + + mimodb + + + + + + + IMGT/LIGM + + + BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments. + false + BiGG Compartment + + https://identifiers.org/bigg.compartment:$1 + + ^[a-z_A-Z]+$ + None + + c + + + + None + + true + J.Bard@ed.ac.uk + + None + Human developmental anatomy, abstract version + + + + + ScopusID + + + + + + efo + + + + co_336 + + + + + string + + + + + + + MZSPEC + + + + 70 + Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites. + P3DB Protein + + ^\d+$ + false + None + + https://identifiers.org/p3db.protein:$1 + + + + BIGG.MODEL + + + + + + gdc + + + + + GAZ + + + + hamap + + + + + Small Molecule Pathway Database + SMP0000219 + + ^SMP\d+$ + + https://smpdb.ca/view/$1 + + The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram. + + false + + None + + + spdx + + + + + + + MGI + + + mirbase.mature + + + + + + co_343 + + + + + noctua.geneontology.org/editor/graph/gomodel:$1 + 5fce9b7300001250 + + None + Gene Ontology Causal Assembly Model + false + http://www.geneontology.org/gocam + + + + ZFIN + + + + biomodels.vocabulary + + + + + None + ModelDB + + + 45539 + + false + + https://identifiers.org/modeldb:$1 + ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment. + ^\d+$ + + + + + bcio + + + + CSA + + + + GLIDA Ligand + ^L\d+$ + + + false + + https://identifiers.org/glida.ligand:$1 + + The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands. + None + L000001 + + + + VZ + + + + HINV.LOCUS + + + + + ARRAYMAP + + + + + bmrb + + + + + + ECOCORE + + + + + + MGI + + + smart + + + + + drugbank + + + + + dictyBase + + + + + + + BIONUMBERS + + + + + TCDB + + + + + interpro + + + ECTO + + + + + The Echinoderm Anatomy and Development Ontology + ettensohn@cmu.edu + + https://github.com/echinoderm-ontology/ecao_ontology + + + false + https://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_$1 + + None + + + + + SCDO + + + + + nuclearbd + + + rebase + + + + + + WB_REF + + + + + + biosystems + + + + + co_320 + + + treebase + + + + + + neurolex + + + + + NCBI_NP + + + + + phosphosite.residue + + + + umbbd.reaction + + + + + + + FAO + + + + + metacyc.compound + + + + + PDRO + + + + dcat + + + + + + phosphopoint.kinase + + + MultiCellDS Digital Cell Line + MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata. + https://identifiers.org/multicellds.cell_line:$1 + ^MCDS_L_[a-zA-Z0-9]{1,10}$ + + + + + MCDS_L_0000000001 + false + None + + + + + ubio.namebank + + + + + BFO + + + SIO + + + + + + GO + + + + + sugarbind + + + + + + PANTHER.PTHCMP + + + Ontology Lookup Service + true + false + The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. + https://www.ebi.ac.uk/ols + chebi + https://www.ebi.ac.uk/ols/ontologies/$1 + true + + + + hpscreg + + + + + + ADW + + + + pharmgkb.pathways + + + + + maizegdb.locus + + + + + + MeSH + + + + CRISP Thesaurus + false + None + + None + 2004-2820 + + + + + myco.marinum + + + helpdesk@cropontology-curationtool.org + http://www.cropontology.org/ontology/CO_365/Fababean + false + developed by ICARDA - Dec 2018 + + + Fababean ontology + https://www.ebi.ac.uk/ols/ontologies/co_365/terms?iri=http://purl.obolibrary.org/obo/CO_365_$1 + + + MEROPS.FAMILY + + + + + + + MMUSDV + + + sgn + + + + + + + gxa.gene + + + + + P665 + + + + oma.hog + + + + https://identifiers.org/bugbase.protocol:$1 + + ^\d+$ + BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols. + None + + + 67 + + BugBase Protocol + false + + + + + PathWhiz + + + dbgap + + + + + + + PROTONET.PROTEINCARD + + + ENSEMBL + + + + + rbk + + + + + MOD + + + + + COMPLEXPORTAL + + + + + SIGNOR + + + + + + TAIR.PROTEIN + + + + + + TGMA + + + + + OOSTT + + + + bspo + + + + EU89H + + + + + PO + + + + + + chebi + + + + BITTERDB.REC + + + + + + + panther.pthcmp + + + DBG2INTRONS + + + + + depod + + + + + + bto + + + + + + phenolexplorer + + + + + WBVocab + + + zinc + + + + + 6VDC956 + DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences. + https://identifiers.org/dlxb:$1 + ^[A-Z0-9]{6,7}$ + + Linear double stranded DNA sequences + + false + + None + + + https://identifiers.org/inchikey:$1 + + InChIKey + The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI. + + + RYYVLZVUVIJVGH-UHFFFAOYSA-N + + ^[A-Z]{14}\-[A-Z]{10}(\-[A-Z])? + + false + None + + + + + MIM + + + WB-BT + + + + + Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB. + ^Os\S+g\d{7}$ + None + + https://identifiers.org/rapdb.locus:$1 + RAP-DB Locus + Os01g0883800 + false + + + + + + orphanet + + + + OGI + + + + + hinv.locus + + + + MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis. + + ^\d+$ + 5601141 + + + + https://identifiers.org/microscope:$1 + MicroScope + false + None + + + + + RICENETDB.REACTION + + + + + cgsc + + + + + GLYTOUCAN + + + https://identifiers.org/homd.taxon:$1 + 811 + + The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information. + ^\d+$ + None + false + + HOMD Taxonomy + + + + + ALLERGOME + + + + + + so + + + + + + medlineplus + + + + + genewiki + + + ORCID + + + + + + + MYCO.TUBER + + + pombase + + + + + WB-PHENOTYPE + + + + + http://www.w3.org/ns/dcat#$1 + false + Data Catalog + None + + https://www.w3.org/ns/dcat + + + + Dataset + + + piroplasma + + + + + + + co_321 + + + + None + 17186 + MeSH 2012 + + https://identifiers.org/mesh.2012:$1 + false + + ^[A-Za-z0-9]+$ + + MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012. + + + + MINID Test + 3SBPLMKKVEVR + + https://identifiers.org/minid.test:$1 + false + None + Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. + [A-Za-z0-9]+$ + + + 26 + false + + + https://identifiers.org/ecyano.model:$1 + E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models. + E-cyanobacterium model + + ^\d+$ + None + + + + + + AOP.EVENTS + + + + + HGNC + + + XCO + + + + + INSDC + + + + + + + UNIPATHWAY.COMPOUND + + + co_333 + + + + + + OBI + + + + + + mirnest + + + KEGG.ENVIRON + + + + + dbd + + + + + pr + + + + + bco + + + + + + NGL + + + + + + RXNO + + + + + P3201 + + + The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways. + ^\d+$ + Database of Quantitative Cellular Signaling: Pathway + None + false + + + + https://identifiers.org/doqcs.pathway:$1 + + 131 + + + + + + PECO + + + rgd.strain + + + + + + + METANETX.COMPARTMENT + + + + None + + + Thorsten.Henrich@embl-heidelberg.de + true + + Medaka fish anatomy and development + None + + + + + ZEA + + + + + p3db.site + + + false + + bgee@sib.swiss + An ontology to capture confidence information about annotations. + + https://github.com/BgeeDB/confidence-information-ontology + 0000040 + ^\d{7}$ + + + Confidence Information Ontology + + https://www.ebi.ac.uk/ols/ontologies/cio/terms?iri=http://purl.obolibrary.org/obo/CIO_$1 + + + + PLANA + + + + + + cdd + + + CDD + + + + + TTD.TARGET + + + + + + FOVT + + + + + conoserver + + + + SIO + + + + + + SBO + + + + + + kegg.reaction + + + + + DRAGONDB.LOCUS + + + None + + + Cellosaurus + ^CVCL_[A-Z0-9]{4}$ + https://identifiers.org/cellosaurus:$1 + + CVCL_0440 + + The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines. + + false + + + + zfin + + + + 56305849200 + false + Scopus Researcher Identifier + + None + + ^\d+$ + None + + + + chemdb + + + + chemspider + + + + + + ^[0-9]{7}(\.[0-9a-z.]+)?(_[0-9]+)?$ + false + + Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. + None + 0459895 + https://omabrowser.org/oma/hog/HOG:$1 + OMA HOGs + + + + mesh + + + + UBERON + + + + + + + ^EDI_\d+$ + AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. + None + https://identifiers.org/amoebadb:$1 + + + AmoebaDB + EDI_244000 + false + + + + txpo + + + + + None + + ^[A-Z_0-9]+$ + + The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases. + CALM1 + https://identifiers.org/hgmd:$1 + Human Gene Mutation Database + + false + + + + + vario + + + OHMI + + + + + Genetics Home Reference + saddan + false + None + https://medlineplus.gov/genetics/condition/$1 + + None + + + + co_335 + + + + + wgs + + + + affy.probeset + + + + + Signaling Gateway + A001094 + The Signaling Gateway provides information on mammalian proteins involved in cellular signaling. + false + + + A\d{6}$ + + + https://identifiers.org/signaling-gateway:$1 + None + + + None + + + https://identifiers.org/string:$1 + P53350 + + STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions. +The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. + + Search Tool for Retrieval of Interacting Genes/Proteins + + ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$ + false + + + + GOREL + + + + + + GNO + + + + + chembl + + + + IAO + + + + + aop.events + + + + + pmap.substratedb + + + + PROSITE + + + + + + + GRAMENE.PROTEIN + + + + + P7001 + + + DailyMed + https://identifiers.org/dailymed:$1 + 973a9333-fec7-46dd-8eb5-25738f06ee54 + DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read. + + ^[A-Za-z0-9-]+ + false + + None + + + + + + PID.PATHWAY + + + + BFO + + + + + dbEST + + + + + combine.specifications + + + + + ^TC\d+$ + + + TC010103 + + BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications. + false + Tribolium Genome Database -- Insertion + + https://identifiers.org/beetlebase:$1 + http://www.beetlebase.org/ + + + + VSAO + + + + + + doi + + + + + ctd.gene + + + + + + dragondb.allele + + + https://www.uniprot.org/keywords/$1 + + None + http://www.uniprot.org/keywords/ + UniProt Keywords + false + + KW-1273 + + + + + cellosaurus + + + + + mop + + + + drsc + + + + + + mmrrc + + + HSAPDV + + + + + false + 051 + http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1 + + The RNA Modification Database + None + http://rna.rega.kuleuven.be/rnamods/ + + + + exac.variant + + + + DRON + + + + + https://www.york.ac.uk/res/thomas/ + https://identifiers.org/echobase:$1 + + + + EB0170 + + ^EB\d+$ + EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products. + false + EchoBASE post-genomic database for Escherichia coli + + + + + + + umbbd.pathway + + + inchi + + + + + https://panoramaweb.org/$1.url + Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible. + FxnI151FMs + false + + https://panoramaweb.org + Panorama Public + + + + + + 172 + false + + ^\d+$ + None + The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts. + + Microbial Protein Interaction Database + https://identifiers.org/mpid:$1 + + + + + GENO + + + dashr.expression + + + + + + + RFAM + + + sdbs + + + + + + pporras@ebi.ac.uk + + false + + + + + The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative. + https://identifiers.org/MI:$1 + + Molecular Interactions Controlled Vocabulary + 0058 + https://github.com/HUPO-PSI/psi-mi-CV + + ^MI:\d{4}$ + + + + + + subtiwiki + + + + + epd + + + PFAM + + + + + + + J0705A10 + A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones. + false + + https://identifiers.org/niaest:$1 + + NIA Mouse cDNA Project + ^\w\d{4}\w\d{2}(\-[35])?$ + + http://esbank.nia.nih.gov/ + + + + P815 + + + + ATC + + + + + + edam + + + + NLMID + + + + + + + RNAcentral + + + GENPEPT + + + + + HGNC.GENEFAMILY + + + + + pass2 + + + + + + ICD9 + + + + refseq + + + + + + P2063 + + + + + mesh + + + + bgee.organ + + + + + + + icdc + + + https://bioregistry.io + The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database. + cthoyt@gmail.com + https://bioregistry.io/registry/$1 + bioregistry + Bioregistry + false + + + + AGRICOLA_ID + + + + + + PLANP + + + + + + gmd.analyte + + + + + bacdive + + + UniSTS + + + + + + MCO + + + + MEROPS + + + + + KEGG + + + + + bto + + + + + + + HUGE + + + + + hogenom + + + occ + + + + + PANTHER + + + + + ECHOBASE + + + + + None + BLL + false + OncoTree + http://oncotree.mskcc.org/api/tumorTypes/search/code/$1 + + http://oncotree.mskcc.org + + + + edam + + + + AUTDB + + + + + + + MMRRC + + + + GENEFARM + + + + + MIAPA + + + + + omit + + + + + + OMIABIS + + + + SUBTILIST + + + + BIOMODELS.TEDDY + + + + + + + KEGG.REACTION + + + + MIRO + + + + Leszek@missouri.edu + + true + None + Maize gross anatomy + http://www.maizemap.org/ + + + + + + + robert.hoehndorf@kaust.edu.sa + Flora Phenotype Ontology + + false + Traits and phenotypes of flowering plants occurring in digitized Floras + https://www.ebi.ac.uk/ols/ontologies/flopo/terms?iri=http://purl.obolibrary.org/obo/FLOPO_$1 + + + + https://github.com/flora-phenotype-ontology/flopoontology + + + + + AGRO + + + SITEX + + + + + + Potato ontology + http://www.cropontology.org/ontology/CO_330/Potato + false + https://www.ebi.ac.uk/ols/ontologies/co_330/terms?iri=http://purl.obolibrary.org/obo/CO_330_$1 + helpdesk@cropontology-curationtool.org + CIP - potato ontology - november 2020 + + + + MmusDv + + + + + + + RefSeq + + + + DCM + + + + + + metlin + + + + + FAIRsharing.9kahy4 + + + CHEBI + A registry of commonly used prefixes in the life sciences and linked data + Prefix Commons + https://prefixcommons.org + + false + false + true + + + + + miriam.collection + + + + qtldb + + + + EchoBASE + + + + + + GeneDB + + + + + P351 + + + + + + SEPIO + + + MIRT000002 + false + None + miRTarBase + miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments. + https://identifiers.org/mirtarbase:$1 + + + + + ^MIRT\d{6}$ + + + + + rbo + + + + + GSID + + + + + fplx + + + + + SNOMED + + + + true + + ftp://ftp.bgee.org/general/ontologies/vHOG.obo + 0000411 + None + + None + Vertebrate Homologous Organ Group Ontology + + + + + + MEDDRA + + + + CARO + + + + aro + + + + + + UPA + + + + CLINVAR.SUBMISSION + + + + + + erm + + + + FIX + + + + + + P665 + + + + GXA.GENE + + + + + MAT + + + + + + MONDO + + + + + + huge + + + + + kegg.genes + + + + ^(MNX[CD]\d+|BOUNDARY|IN|OUT)$ + false + + https://identifiers.org/metanetx.compartment:$1 + + + MetaNetX compartment + None + MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments. + MNXC15 + + + PHYTOZOME.LOCUS + + + + + + seed.reaction + + + + + None + 9-1-1 Complex + None + Biological Expression Language + false + + + + + vbrc + + + + LINCS Protein + + https://identifiers.org/lincs.protein:$1 + ^\d+$ + + 200282 + The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins. + false + None + + + + Database of Complete Genome Homologous Genes Families + + HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier. + + + false + None + ^\w+$ + https://identifiers.org/hogenom:$1 + + + HBG284870 + + + + + ASPGD.LOCUS + + + + biomodels.vocabulary + + + + + + MMO + + + Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins. + ^\d+$ + 65 + None + + https://identifiers.org/p3db.site:$1 + + + P3DB Site + false + + + + + panther.family + + + + + IAO + + + + FACEBASE + + + + + HANCESTRO + + + + + cath + + + + + + CHICKENQTLDB + + + + + + UNIPARC + + + false + None + + + \S+ + DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences. + + https://identifiers.org/d1id:$1 + DataONE + + 00030692-0FE1-4A1B-955E-A2E55D659267 + + + + P2084 + + + + + + mfomd + + + + datanator.metabolite + + + + + + OPL + + + https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1 + The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively. + https://restraintsgrid.bmrb.io/NRG/MRGridServlet + false + 28789 + + NMR Restraints Grid + + + + + SPIKE.MAP + + + + PLANA + + + + + + prints + + + SGD.PATHWAYS + + + + + FAIRSHARING + + + + + + + BSPO + + + + + did + + + + + mmp.cat + + + + Integrative and Conjugative Element Ontology + + A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning. + false + + liumeng94@sjtu.edu.cn + https://www.ebi.ac.uk/ols/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_$1 + https://github.com/ontoice/ICEO + + + + + oridb.sacch + + + + + OBI + + + + multicellds.snapshot + + + + + gdsc + + + + + + + UCSC + + + + + bugbase.protocol + + + arrayexpress.platform + + + + + + + ^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$ + false + None + Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data. + + SASDAX8 + + + https://identifiers.org/sasbdb:$1 + Small Angle Scattering Biological Data Bank + + + ZFS + + + + + ^([a-z]{3,5}_)?M\d{5}$ + + + KEGG Module + false + None + + https://identifiers.org/kegg.module:$1 + + KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules. + M00002 + + + + LINCS.PROTEIN + + + + + + HANCESTRO + + + + + + co_358 + + + signor + + + + + ctd.disease + + + + + + + BYKDB + + + wb + + + + + cath.superfamily + + + + + + + rapdb.transcript + + + + + COMPTOX + + + jcggdb + + + + + + MOP + + + + kegg.orthology + + + + + Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features. + + + + THE1B + false + https://identifiers.org/erv:$1 + + Human Endogenous Retrovirus Database + ^[A-Za-z0-9\-\_]+$ + None + + + https://identifiers.org/phytozome.locus:$1 + ^[A-Za-z0-9]+$ + Glyma0021s00410 + + Plant Genome Network + + http://phytozome.jgi.doe.gov/pz/portal.html + + Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information. + false + + + + + + + pharmgkb.disease + + + TXPO + + + + + + ECAO + + + + MULTICELLDS.COLLECTION + + + + + + GLIDA.LIGAND + + + + + false + https://identifiers.org/MGI:$1 + + 6017782 + + + + + Mouse Genome Informatics + http://www.informatics.jax.org/ + + + ^MGI:\d+$ + The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data. + + + addgene + + + + + ega.dataset + + + + + + + BDGP.EST + + + + p3db.protein + + + + P267 + + + + + Xenbase + + + + + + P7807 + + + + + encode + + + + gcst + + + + + + + DRUGBANKV4.TARGET + + + mirtarbase + + + + + fsnp + + + + + + + P2275 + + + false + + yongqunh@med.umich.edu + https://github.com/INO-ontology/ino + https://www.ebi.ac.uk/ols/ontologies/ino/terms?iri=http://purl.obolibrary.org/obo/INO_$1 + Interaction Network Ontology + + + he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles. + + + + + + + gudmap + + + FALDO + + + + + + + genecards + + + + SIGNALING-GATEWAY + + + + + arrayexpress + + + + ICD + + + + + + NDC + + + + + string + + + + + wb.rnai + + + + PMCID + + + + + + + MULTICELLDS.SNAPSHOT + + + + INCHIKEY + + + + + An ontology of minimum information regarding potential drug-drug interaction information. + + + + mbrochhausen@uams.edu + https://www.ebi.ac.uk/ols/ontologies/mpio/terms?iri=http://purl.obolibrary.org/obo/MPIO_$1 + false + Minimum PDDI Information Ontology + + https://github.com/MPIO-Developers/MPIO + + + ecyano.experiment + + + + + https://identifiers.org/MZSPEC:$1 + + PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2 + The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it. + ^mzspec:.+$ + None + + + false + + Universal Spectrum Identifier + + + + + DRAGONDB.PROTEIN + + + dbSNP + + + + + mmdb + + + + + prosite + + + + + + + CMO + + + CST.AB + + + + + false + None + + + https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1 + ValidatorDB + + + 2h6o + ^[A-Za-z0-9\/]+$ + Database of validation results for ligands and non-standard residues in the Protein Data Bank. + + + + supfam + + + + + GOOGLE.PATENT + + + + + + + PSCDB + + + SoyBase + + + + + + + licebase + + + + + pco + + + + Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles + isanchez@cnb.csic.es + http://scipion.i2pc.es/ontology/cryoem + false + Cryo Electron Microscopy ontology + + + https://www.ebi.ac.uk/ols/ontologies/cryoem/terms?iri=http://purl.obolibrary.org/obo/CRYOEM_$1 + + + aop + + + + + + + pseudomonas + + + + None + Cell Line Ontology [derivative] + None + + true + + + vgnc + + + + + + + ORPHA + + + + homd.seq + + + + + + jcm + + + + DIP + + + + + RGD + + + + + PRINTS + + + + worms + + + + + ^\d+$ + 728 + + + Mouse pathology ontology + https://www.ebi.ac.uk/ols/ontologies/mpath/terms?iri=http://purl.obolibrary.org/obo/MPATH_$1 + false + + https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo + http://www.pathbase.net + + pns12@hermes.cam.ac.uk + + A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes + + + + atfdb.family + + + + + FIDEO + + + + 3dmet + + + + + + + imex + + + + swiss-model + + + + compulyeast + + + + + + P3852 + + + + exac.gene + + + + + + + snomedct + + + + + Xenbase + + + + + agro + + + BAO + + + + + + + proteomicsdb.protein + + + MEROPS + + + + + FlyBase + + + + + + + so + + + + huge + + + + + + door + + + + + gramene.qtl + + + + protonet.proteincard + + + + hpscreg + + + + + + TXPO + + + + CAZY + + + + + + kegg.pathway + + + + + + duo + + + CORUM + + + + + PLO + + + + + hinv.protein + + + + + + http://current.geneontology.org/metadata/gorefs/index.html + false + Gene Ontology Database references + + + + + The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of "GO content" meetings at which substantial changes in the ontologies are discussed and made. + ^GO_REF:\d{7}$ + https://identifiers.org/GO_REF:$1 + 0000041 + + + + + FLOPO + + + idoo + + + + + + MYCOBANK + + + + + + iuphar.family + + + OBCS + + + + + + KEGG.GENE + + + + VFDB.GENUS + + + + + + + wormpep + + + + IUPHAR_RECEPTOR + + + + + FOBI + + + + + ICEO + + + + SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome. + https://identifiers.org/snp2tfbs:$1 + None + rs11603840 + false + + ^rs[0-9]+$ + + SNP to Transcription Factor Binding Sites + + + + crisprdb + + + + + ogg + + + + + + GDC + + + + + mobidb + + + + ido + + + + CTO + + + + + kegg.environ + + + + + datanator.gene + + + + + asap + + + + + + + taxon + + + + bgee.stage + + + + + proteomicsdb.peptide + + + + + echobase + + + + PSI-MOD + + + + + + + GENETREE + + + prosite + + + + + + P3860 + + + + DUO + + + + + plasmodb + + + + + + + vmhgene + + + + gmd + + + + + hcvdb + + + + + + idot + + + + ISFinder + + + + mmmp:biomaps + + + + + glycoepitope + + + + + https://identifiers.org/flowrepository:$1 + + FR-FCM-ZYGW + FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field. + + FlowRepository + ^FR\-FCM\-\w{4}$ + + false + None + + + + WIKIPATHWAYS + + + + + + jcsd + + + + + foodon + + + + + xco + + + + + pdb-ccd + + + LABO + + + + + + P352 + + + + ORIDB.SACCH + + + + + dbg2introns + + + + + SPD + + + + + + + P233 + + + ERO + + + + + + P846 + + + + + aeo + + + + owl + + + + + VMHREACTION + + + + + facebase + + + + + + + KEGG_PATHWAY + + + + + MS + + + + + PROTONET.CLUSTER + + + omia + + + + + PHOSPHOSITE.RESIDUE + + + + + GRAMENE.GROWTHSTAGE + + + + + + + iuphar.ligand + + + + + PSIMOD + + + + + MMP.CAT + + + + nbo + + + + CORUM + + + + + + NONCODEV4.RNA + + + + + + HPM.PEPTIDE + + + + ICD9CM + + + + + HPA + + + + dctypes + + + + + + + storedb + + + + + MFMO + + + INSDC.CDS + + + + + + hamap + + + + + + kegg.metagenome + + + None + + + PED00037 + https://identifiers.org/ped:$1 + ^PED\d{5}$ + Protein Ensemble Database + The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins. + false + + + + + DDPHENO + + + + + Ontology for Nutritional Studies + An ontology for description of concepts in the nutritional studies domain. + francesco.vitali@ibba.cnr.it + + false + https://github.com/enpadasi/Ontology-for-Nutritional-Studies + https://www.ebi.ac.uk/ols/ontologies/ons/terms?iri=http://purl.obolibrary.org/obo/ONS_$1 + + + + genepio + + + + + + None + + Wikidata Property + + P4355 + false + None + + + pato + + + + + + ecto + + + + + + bioproject + + + + glytoucan + + + + + cdpd + + + + + + SYMP + + + + cco + + + + + + oryzabase.strain + + + + oryzabase.strain + + + + + + ncbiprotein + + + https://www.ebi.ac.uk/ols/ontologies/co_335/terms?iri=http://purl.obolibrary.org/obo/CO_335_$1 + CIAT Common bean trait dictionary - version August 2014 + false + http://www.cropontology.org/ontology/CO_335/Common%20Bean + + helpdesk@cropontology-curationtool.org + Common Bean ontology + + + + FBcv + + + + + + CEPH + + + + UniProt Diseases + None + 04240 + https://www.uniprot.org/diseases/DI-$1 + https://www.uniprot.org/diseases/ + false + + + + LINCS.CELL + + + + + + + aspgd.protein + + + prints + + + + + + ELM + + + + + true + + http://genex.hgu.mrc.ac.uk/ + J.Bard@ed.ac.uk + + + Human developmental anatomy, timed version + None + + + + DRAGONDB.DNA + + + + CID + + + + + HOMD.SEQ + + + + + + + cl + + + + EUPATH + + + + + + occ + + + + ensembl.fungi + + + + + + neurovault.image + + + + + ONTONEO + + + + + BFO + + + + TAXRANK + + + + VFDB.GENE + + + + + + WBbt + + + + + affy.probeset + + + + IMGT/HLA + + + + + Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools. + + false + None + + ^[0-9]{4}$ + Image Data Resource + + 0001 + https://identifiers.org/idr:$1 + + + + orth + + + + + co_324 + + + + + EGGNOG + + + + + NCBITAXON + + + + + + sabiork.compound + + + + + AAO + + + Toxin and Toxin Target Database + Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information. + https://identifiers.org/t3db:$1 + None + + T3D0001 + + + ^T3D\d+$ + false + + + + + + gsso + + + + + ZEA + + + + + gramene.gene + + + + XCO + + + + EcoGene + + + + + HSAPDV + + + + + + + darc + + + + + MOD + + + + + pmap.substratedb + + + + + GeneCards + + + + HINV.TRANSCRIPT + + + + metanetx.compartment + + + + + UniProtKB-KW + + + + + MW.STUDY + + + + + + ^VB\.[A-Za-z][A-Za-z]\..*$ + VB.Ob.3736.GRSM125 + VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. + VegBank + https://identifiers.org/vegbank:$1 + + false + None + + + ricegap + + + + + + + miriam.resource + + + + funcbase.human + + + + + Reactome + + + + + MAT + + + + + + sider.effect + + + + unimod + + + + myco.smeg + + + + + 1755 + + + + The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands. + + https://identifiers.org/iuphar.ligand:$1 + None + + false + + IUPHAR ligand + ^\d+$ + + + + + ZFIN + + + + + pharmgkb.gene + + + + arxiv + + + + + + omia + + + + P7260 + + + + + + HGNC + + + dbest + + + + + GOLD.META + + + + + + + kegg.genome + + + + + mesh.2012 + + + + HGNC.SYMBOL + + + + biodbcore-001140 + + + + + + false + Drosophila RNAi Screening Center + https://identifiers.org/drsc:$1 + + + + None + ^DRSC\d+$ + DRSC05221 + The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene. + + + + UM-BBD_reactionID + + + + + + PFAM + + + + nextprot + + + + false + CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes. + https://github.com/obophenotype/chiro + + http://purl.obolibrary.org/obo/chiro.obo + ChEBI Integrated Role Ontology + + vasilevs@ohsu.edu + https://www.ebi.ac.uk/ols/ontologies/chiro/terms?iri=http://purl.obolibrary.org/obo/CHIRO_$1 + + + + + + protonet.proteincard + + + + + CRO + + + + + + MYCO.MARINUM + + + + + AGRO + + + + omit + + + + + + kegg + + + + massbank + + + + false + ^\d{7}$ + + 0001290 + raymond@caltech.edu + + + Ontology about the gross anatomy of the C. elegans + C. elegans Gross Anatomy Ontology + + + + https://www.ebi.ac.uk/ols/ontologies/wbbt/terms?iri=http://purl.obolibrary.org/obo/WBBT_$1 + https://github.com/obophenotype/c-elegans-gross-anatomy-ontology + + + + + CMF + + + NDDF + + + + + + + gudmap + + + + microsporidia + + + + + exo + + + + + sibo + + + + CL + + + + + hdr + + + + + + ITO + + + + + oci + + + + hgmd + + + + + PHENOLEXPLORER + + + + + + + FMA + + + nmr + + + + + prov + + + + + + + TRANS + + + + + RICENETDB.PROTEIN + + + + false + None + TTD Target + The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target. + https://identifiers.org/ttd.target:$1 + + + + ^TTDS\d+$ + TTDS00056 + + + yid + + + + + oclc + + + + + RNACENTRAL + + + + + + + doi + + + jrc-eurl-ecvam-chemagora + false + + + + https://identifiers.org/eu89h:$1 + ^[a-z0-9\-_]+$ + + JRC Data Catalogue + None + The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union. + + + + + GPCRDB + + + + + bioportal + + + + + ricenetdb.protein + + + CHEMSPIDER + + + + + + + ORDO + + + + po + + + + + ISBN + + + + + + SEED + + + RS + + + + + INO + + + + + + P2106 + + + + VARIO + + + + + CHEMINF + + + + + UM-BBD_ruleID + + + + + + + CLYH + + + + ONS + + + + PINA + + + + + REX + + + + + + + CID + + + + + apid.interactions + + + + + MA + + + + ICD10 + + + + + http://www.enanomapper.net/ + https://www.ebi.ac.uk/ols/ontologies/enm/terms?iri=http://purl.obolibrary.org/obo/ENM_$1 + + The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. + false + eNanoMapper Ontology + + + + + + HSSP + + + + + ensembl.protist + + + unists + + + + + PLANTTFDB + + + + + P3406 + + + + + + MIPMOD + + + + + + mdm + + + + + envo + + + chebi + + + + + + SIBO + + + + + + topdb + + + + + MO + + + + + GENO + + + + oridb.schizo + + + + ^\d{7}$ + https://bioregistry.io/collection + false + cthoyt@gmail.com + + https://bioregistry.io/collection/$1 + 0000001 + Bioregistry Collections + Manually curated collections of resources stored in the bioregistry + + + + + panther.pathway + + + + dictyBase + + + + + QUDT + + + + seed.reaction + + + + + + + mw.project + + + + OBIB + + + + + + bigg.reaction + + + pride + + + + + The Food Interactions with Drugs Evidence Ontology (FIDEO) represents Food-Drug Interactions and underlying interaction mechanisms described in scientific publications, drug and adverse effects databases, and drug interactions compendia. The ontology builds on previous efforts from the FoodOn, DRON, ChEBI, and DIDEO ontologies as well as the Thériaque database. This ontology is maintained at https://gitub.u-bordeaux.fr/erias/fideo, and requests for changes or additions should be filed at the issue tracker there. + + Food Interactions with Drugs Evidence Ontology + https://www.ebi.ac.uk/ols/ontologies/fideo/terms?iri=http://purl.obolibrary.org/obo/FIDEO_$1 + https://gitub.u-bordeaux.fr/erias/fideo + false + + + georgeta.bordea@u-bordeaux.fr + + + + + + cath.superfamily + + + + MOP + + + + + + AGRICOLA + + + reactome + + + + + oma.grp + + + + + + + paxdb.organism + + + + + PW + + + + kegg.glycan + + + + + + PubChem_Substance + + + + + ricenetdb.gene + + + + + rxno + + + sheepqtldb + + + + + opb + + + + + dictyBase + + + + + + + STATO + + + NBRC + + + + + grin.taxonomy + + + + + + pmp + + + + + + SGN + + + + false + Golm Metabolome Database Analyte + 4f0fa9b6-514f-4ff4-98cc-0009bc08eb80 + + + + https://identifiers.org/gmd.analyte:$1 + Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes. + None + ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ + + + + P5501 + + + + bigg.metabolite + + + + + + CDD + + + + BUGBASE.PROTOCOL + + + + + + BCO + + + + + + gpcrdb + + + + + yetfasco + + + + + hp + + + + + encode + + + biosimulators + + + + + CAS + + + + + + + swo + + + RNAMODS + + + + + + + EXAC.TRANSCRIPT + + + + oa + + + + SISU + + + + + + + EnsemblFungi + + + kegg.genes + + + + + NAPDI + + + + + + + reactome + + + + P8656 + + + + metacyc.reaction + + + + + PANTHER Pathway Component + The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway +components may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation. + + + P00266 + false + + https://identifiers.org/panther.pthcmp:$1 + + None + ^G|P|U|C|S\d{5}$ + + + phosphopoint.protein + + + + + + OrthoDB + + + + + AISM + + + + + EFO + + + + swh + + + + + GAZ + + + + + + + ECO + + + MSigDB + + + + + + + cgd + + + + + FUNCBASE.MOUSE + + + CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI). + batchelorc@rsc.org + false + https://www.ebi.ac.uk/ols/ontologies/chmo/terms?iri=http://purl.obolibrary.org/obo/CHMO_$1 + https://github.com/rsc-ontologies/rsc-cmo + + + Chemical Methods Ontology + ^\d{7}$ + + + 0002902 + + + + + SBO + + + + + + oryzabase.mutant + + + PSEUDOMONAS + + + + + + 1784 + Diseases Database + None + None + + false + + + DERMO + + + + + + + door + + + NEMO + + + + + https://identifiers.org/conoserver:$1 + false + ConoServer + + + ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails. + ^\d+$ + + None + + + 2639 + + + FAIRsharing.p06nme + + + + + + co_337 + + + + + + YPO + + + + + ligandexpo + + + worfdb + + + + + + P715 + + + + + SAO + + + + + PMDB + + + + HOMOLOGENE + + + + + + CARO + + + + + + vario + + + IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents. + https://identifiers.org/igsn:$1 + + false + None + AU124 + International Geo Sample Number + + ^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$ + + + VT + + + + + ecogene + + + + + p3db.protein + + + + + + BGEE.FAMILY + + + + bykdb + + + + + + CATH.DOMAIN + + + + mpid + + + + + + phytozome.locus + + + + sabiork.reaction + + + + + + + STRING + + + ttd.drug + + + + + + + euclinicaltrials + + + + jcggdb + + + + None + false + + Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis. + Phenol-Explorer + 75 + https://identifiers.org/phenolexplorer:$1 + + + + ^\d+$ + + + umbbd.rule + + + + + aceview.worm + + + + + + + mmp.db + + + + + ligandbox + + + + ecyano.model + + + + massbank + + + + + seed + + + + + + + odor + + + false + + helpdesk@cropontology-curationtool.org + + version Dec 2019 + Bambara groundnut ontology + https://www.ebi.ac.uk/ols/ontologies/co_366/terms?iri=http://purl.obolibrary.org/obo/CO_366_$1 + http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut + + + Phytozome + + + + + + + PASS2 + + + MPIO + + + + + + UM-BBD_pathwayID + + + + + + CIDO + + + ^PF\d{5}$ + The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored. + + false + + + + https://identifiers.org/pfam:$1 + + PF11779 + http://pfam.xfam.org + + + + Pfam database of protein families + + + DOQCS.PATHWAY + + + + + + clyh + + + + P932 + + + + + + envo + + + + + UniParc + + + + + VectorBase + + + + faldo + + + + + + KEGG-path + + + + medgen + + + + + + VANDF + + + + + vmhreaction + + + + + false + GO Evidence Code + None + http://geneontology.org/docs/guide-go-evidence-codes/ + + + oid + + + + + + ENSEMBL.PROTIST + + + + phylomedb + + + + + UNIPATHWAY.REACTION + + + + + + DOID + + + + + + unipathway.reaction + + + kegg.metagenome + + + + + kegg.environ + + + + + + TRANS + + + + + + DBD + + + ricenetdb.mirna + + + + + + probonto + + + + + + ECO + + + + + mro + + + + efo + + + + + pscdb + + + + umbbd.rule + + + + + clinvar.record + + + + + + https://github.com/Radiobiology-Informatics-Consortium/RBO + RBO is an ontology for the effects of radiation on biota in terrestrial and space environments. + Radiation Biology Ontology + daniel.c.berrios@nasa.gov + + false + + + https://www.ebi.ac.uk/ols/ontologies/rbo/terms?iri=http://purl.obolibrary.org/obo/RBO_$1 + + + + + subtiwiki + + + + + igsn + + + MINT + + + + + + + tgd + + + smpdb + + + + + + merops.inhibitor + + + + classyfire + + + + + + + arachnoserver + + + + + SGD + + + + ORNASEQ + + + + pazar + + + + + + + tgd + + + + aism + + + + GWASCENTRAL.MARKER + + + + + + + TTO + + + msio + + + + + + + dip + + + + + IDOT + + + + TADS + + + + + funcbase.mouse + + + + + + omp + + + + co_360 + + + + + + kegg + + + + + gold.genome + + + storedb + + + + + erv + + + + + P592 + + + + + + + SDBS + + + + pgx + + + + TAXRANK + + + + + soybase + + + + + + + PANTHER + + + clinvar.record + + + + + + + P3289 + + + + + fplx + + + MS + + + + + + ONTONEO + + + + + + gramene.taxonomy + + + + + MF + + + + + ctd.gene + + + + ApiDB_PlasmoDB + + + + + + peco + + + + hgnc.genefamily + + + + + OHD + + + + + + PW + + + + + UniPathway + + + repeatsdb.structure + + + + + CLAO + + + + + COB + + + + + + + vfb + + + + FOODON + + + + false + Human Plasma Membrane Receptome Families + + 5.1 + None + http://www.receptome.org + http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1 + + + ARRAYEXPRESS.PLATFORM + + + + + + + biomodels.kisao + + + goa + + + + + + hssp + + + + + + ricenetdb.gene + + + + + TAO + + + APID.INTERACTIONS + + + + + + + FBOL + + + OCLC + + + + + + + gxa.gene + + + + + cryptodb + + + + + BUGBASE.EXPT + + + + + MPIO + + + + idomal + + + + cldb + + + + + mod + + + + + oarcs + + + + + MAIZEGDB.LOCUS + + + + + + + unite + + + + + PTO + + + + aftol.taxonomy + + + + + + disprot.region + + + PR + + + + + HOGENOM + + + + + + + yrcpdr + + + false + https://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_$1 + Ontology of RNA Sequencing + + safisher@upenn.edu + + http://kim.bio.upenn.edu/software/ornaseq.shtml + + An application ontology designed to annotate next-generation sequencing experiments performed on RNA. + + + + + mmp.fun + + + + + + foodon + + + ark + + + + + + + VBASE2 + + + MMMP:BIOMAPS + + + + + ICO + + + + + + NEUROVAULT.IMAGE + + + + + + exac.transcript + + + + + CVDO + + + + + neurovault.collection + + + vmhmetabolite + + + + + + + phylomedb + + + + + FMA + + + + + hgmd + + + + + tritrypdb + + + sitex + + + + + + + GeneDB + + + cameo + + + + + + + CCO + + + + + pmap.cutdb + + + + + NARCIS + + + noncodev4.rna + + + + + None + + http://xmlns.com/foaf/0.1/$1 + false + None + + + Friend of a Friend + + + + OPMI + + + + + + HANCESTRO + + + + bdgp.insertion + + + + + + + UCSC + + + FMA + + + + + + DOMMINO + + + + + MobiDB + + + + FAIRsharing.651n9j + + + + + + + NCBIGene + + + MaizeGDB_Locus + + + + + + RefSeq + + + + + + Coriell + + + signaling-gateway + + + + + + + validatordb + + + ttd.target + + + + + SABIO-RK + + + + + ERO + + + + + + atol + + + + + HAO + + + + + + cio + + + csa + + + + + bdsc + + + + + + + cubedb + + + + GO + + + + + + ensembl.metazoa + + + OLATDV + + + + + aop + + + + + + + inchikey + + + + + ATFDB.FAMILY + + + HOVERGEN + + + + + EUCLINICALTRIALS + + + + + CTD.GENE + + + + + + + bitterdb.cpd + + + + P699 + + + + + + HUGO + + + + + MFO + + + ncit + + + + + + + ega.dataset + + + + OBI + + + + + + SGN + + + tgma + + + + + + + NCIT + + + + + PGX + + + APD + + + + + genpept + + + + + + + GLYCOEPITOPE + + + GABI + + + + + + + swissregulon + + + + + PHOSPHOSITE.PROTEIN + + + maxo + + + + + AFFY.PROBESET + + + + + + + MEDDRA + + + + + px + + + + MA + + + + + + ubio.namebank + + + + + SAO + + + co_345 + + + + + rapdb.locus + + + + + + P1550 + + + + + paxdb.protein + + + + bold.taxonomy + + + + + + NOMEN + + + + PRIDE + + + + + + + CAID + + + + + irefweb + + + mmo + + + + + VMC + + + + + + + omit + + + + + GRAMENE.TAXONOMY + + + + + SEPIO + + + + img.gene + + + + + + splash + + + + aop.stressor + + + + biocarta.pathway + + + + + + + PROTEOMICSDB.PEPTIDE + + + wikigenes + + + + + eo + + + + + + VT + + + + + + sasbdb + + + + + FAIRsharing.e1byny + + + The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode. + https://identifiers.org/csd:$1 + Cambridge Structural Database + + ^[A-Z]{6}(\d{2})?$ + PELNAW + false + None + + + + BITTERDB.CPD + + + + + + + STRING + + + VTO + + + + + pso + + + + + RO + + + + + + + hsapdv + + + + htn + + + + + + NCBIGene + + + mmrrc + + + + + ensembl + + + + + + + mycobank + + + + VTO + + + + HTN + + + + + MIMODB + + + + + + isbn + + + + MPATH + + + + + + + KNAPSACK + + + TC + + + + + + HAO + + + + + + supfam + + + + + BIRNLEX + + + lipidbank + + + + + + + GIARDIADB + + + + OLATDV + + + + + + OGG + + + + + PSDO + + + + MIRO + + + + odam + + + + + + PDB + + + + + + comptox + + + + + dbgap + + + pubmed + + + + + + dev.ga4ghdos + + + + + P686 + + + + + + treefam + + + + PHYLOMEDB + + + + + pride + + + + + + isfinder + + + + None + None + true + eVOC mouse development stage + + + swiss-model + + + + + + FBbi + + + + VGNC + + + + + http://www.w3.org/ns/activitystreams + http://www.w3.org/ns/activitystreams#$1 + false + + Activity Streams + None + + + + gramene.protein + + + + + ENM + + + + + PubChem_BioAssay + + + + + SIO + + + + + gramene.gene + + + + + + ECOCYC + + + + P492 + + + + OPB + + + + + + + pigqtldb + + + + + REXO + + + hprd + + + + + FAO + + + + + CMF + + + + + + peroxibase + + + + MycoBank + + + + + + MYCO.SMEG + + + + + + orthodb + + + biogrid + + + + + bionumbers + + + + + + facebase + + + + + + BCO + + + TAO + + + + + false + + None + https://github.com/MIT-LCP/mimic-omop + MIMIC III Database + + + ARACHNOSERVER + + + + + + + RXCUI + + + + merops.family + + + + ZFA + + + + + + caps + + + + + bto + + + + false + The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community. + + + EMD-1001 + Electron Microscopy Data Bank + + + + ^EMD-\d{4}$ + None + https://identifiers.org/emdb:$1 + + + + + did + + + + + bindingdb + + + geno + + + + + miRBase + + + + + autdb + + + + + UNIMOD + + + + + bionumbers + + + + + pride + + + + + P7001 + + + + + + hgnc + + + + EcoliWiki + + + + + + + addgene + + + + PATO + + + + + HP + + + + + + SASBDB + + + + sitex + + + + hgnc.genefamily + + + + + oridb.sacch + + + + + + PHIPO + + + + DEPOD + + + + + FYPO + + + + + + bugbase.expt + + + + + REBASE + + + + UNITE + + + + + + EnsemblMetazoa + + + + + pathwaycommons + + + + + RO + + + + + HTN + + + + + idr + + + + + icd + + + + + + bdgp.est + + + UNII + + + + + + + BEGDB + + + + GENATLAS + + + + CDD + + + + + + ENVO + + + + + + CELLOSAURUS + + + + HOM + + + + + + pirsf + + + MassIVE + + + + + + + ecyano.model + + + pmc + + + + + cst + + + + + PO + + + + + + + biocyc + + + eggNOG + + + + + VT + + + + + + + erv + + + + chemidplus + + + + microsporidia + + + + + + + RESID + + + + INCHI + + + + + + VECTORBASE + + + + SUGARBIND + + + + + KEGG_ENZYME + + + + + + PdumDv + + + + ensembl.metazoa + + + + false + an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies. + https://www.ebi.ac.uk/ols/ontologies/msio/terms?iri=http://purl.obolibrary.org/obo/MSIO_$1 + + https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO + Metabolomics Standards Initiative Ontology + + + + bacdive + + + + + cbioportal + + + + + + CHEBI + + + + GRID + + + + + VSAO + + + + + + + dragondb.locus + + + MFO + + + + + + viaf + + + + cdd + + + + + + om + + + + + JSTOR + + + + + http://matrixdb.univ-lyon1.fr/ + None + false + http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1 + MatrixDB + MULT_4_VAR1_bovine + + + + + 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It also prompted the curation of mappings to FAIRSharing when possible." biostudies|bmrb|cellimage|ega.dataset|ega.study|emdb|empiar|genbank|geo|idr|insdc.sra|massive|panorama|pdb|peptideatlas.dataset|pride|ssbd.dataset|ssbd.project Charles Tapley Hoyt 0000-0003-4423-4370 +0000002 Semantic Web Context Resources used in the semantic web, based on https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml. ac|dcat|dcterms|dctypes|faldo|foaf|idot|oa|oboinowl|owl|prov|rdf|rdfs|void|xsd Charles Tapley Hoyt 0000-0003-4423-4370 diff --git a/docs/_data/collections.yml b/docs/_data/collections.yml new file mode 100644 index 000000000..c765923f7 --- /dev/null +++ b/docs/_data/collections.yml @@ -0,0 +1,53 @@ +'0000001': + authors: + - name: Charles Tapley Hoyt + orcid: 0000-0003-4423-4370 + description: 'These resources were listed in "Sharing biological data: why, when, + and how", which prompted further novel curation of the Bioregistry which included + the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the + curation of mappings to FAIRSharing when possible.' + identifier: '0000001' + name: 'Resources mentioned in "Sharing biological data: why, when, and how"' + resources: + - biostudies + - bmrb + - cellimage + - ega.dataset + - ega.study + - emdb + - empiar + - genbank + - geo + - idr + - insdc.sra + - massive + - panorama + - pdb + - peptideatlas.dataset + - pride + - ssbd.dataset + - ssbd.project +'0000002': + authors: + - name: Charles Tapley Hoyt + orcid: 0000-0003-4423-4370 + contextName: semweb + description: Resources used in the semantic web, based on https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml. + identifier: '0000002' + name: Semantic Web Context + resources: + - ac + - dcat + - dcterms + - dctypes + - faldo + - foaf + - idot + - oa + - oboinowl + - owl + - prov + - rdf + - rdfs + - void + - xsd diff --git a/docs/_data/metaregistry.tsv b/docs/_data/metaregistry.tsv new file mode 100644 index 000000000..68f242bf9 --- /dev/null +++ b/docs/_data/metaregistry.tsv @@ -0,0 +1,14 @@ +metaprefix name homepage description download example provider registry resolver provider_formatter resolver_formatter +biolink Biolink Model Registry https://raw.githubusercontent.com/biolink/biolink-model A modeling paradigm-specific registry of prefixes and their URL expansions https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.yaml doi False True False +bioportal BioPortal Prefixes https://bioportal.bioontology.org/ The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry CHEBI True True False https://bioportal.bioontology.org/ontologies/$1 +bioregistry Bioregistry https://bioregistry.io The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database. https://bioregistry.io/api/registry/ chebi False True True https://bioregistry.io/registry/$1 https://bioregistry.io/$1:$2 +fairsharing FAIRSharing https://fairsharing.org/ A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies. FAIRsharing.62qk8w True True False https://fairsharing.org/$1 +go Gene Ontology Registry http://geneontology.org/ A database-specific registry supporting curation in the Gene Ontology https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml CHEBI False True False +miriam Identifiers.org https://identifiers.org The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession). https://registry.api.identifiers.org/resolutionApi/getResolverDataset chebi False True True https://registry.identifiers.org/registry/$1 https://identifiers.org/$1:$2 +n2t Name-to-Thing https://n2t.net An ARK resolver as well as resolver built with common prefxies as in Identifiers.org https://n2t.net/e/cdl_ebi_prefixes.yaml chebi False True True https://n2t.net/$1:$2 +ncbi National Center for Biotechnology Information Registry https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/ A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources ECOCYC False True False +obofoundry OBO Foundry http://www.obofoundry.org/ The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. http://www.obofoundry.org/registry/ontologies.yml chebi False True False http://www.obofoundry.org/ontology/$1 +ols Ontology Lookup Service https://www.ebi.ac.uk/ols The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. chebi True True False https://www.ebi.ac.uk/ols/ontologies/$1 +prefixcommons Prefix Commons https://prefixcommons.org A registry of commonly used prefixes in the life sciences and linked data https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/commons_context.jsonld CHEBI False True False +uniprot.database UniProt Cross-ref database https://www.uniprot.org/database/ The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources. https://www.uniprot.org/database/?format=rdf 0174 False True False https://www.uniprot.org/database/DB-$1 +wikidata Wikidata Property https://www.wikidata.org An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries. P683 True True False https://www.wikidata.org/wiki/Property:$1 diff --git a/docs/_data/metaregistry.yml b/docs/_data/metaregistry.yml new file mode 100644 index 000000000..555a1e831 --- /dev/null +++ b/docs/_data/metaregistry.yml @@ -0,0 +1,149 @@ +biolink: + description: A modeling paradigm-specific registry of prefixes and their URL expansions + download: https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.yaml + example: doi + homepage: https://raw.githubusercontent.com/biolink/biolink-model + name: Biolink Model Registry + prefix: biolink + provider: false + registry: true + resolver: false +bioportal: + description: The BioPortal is a less stringent registry of biomedical ontologies + than the OBO Foundry + example: CHEBI + formatter: https://bioportal.bioontology.org/ontologies/$1 + homepage: https://bioportal.bioontology.org/ + name: BioPortal Prefixes + prefix: bioportal + provider: true + registry: true + resolver: false +bioregistry: + description: The Bioregistry is integrative meta-registry of biological databases, + ontologies, and nomenclatures that is backed by an open database. + download: https://bioregistry.io/api/registry/ + example: chebi + formatter: https://bioregistry.io/registry/$1 + homepage: https://bioregistry.io + name: Bioregistry + prefix: bioregistry + provider: false + registry: true + resolver: true + resolver_url: https://bioregistry.io/$1:$2 +fairsharing: + description: A curated, informative and educational resource on data and metadata + standards, inter-related to databases and data policies. + example: FAIRsharing.62qk8w + formatter: https://fairsharing.org/$1 + homepage: https://fairsharing.org/ + name: FAIRSharing + prefix: fairsharing + provider: true + registry: true + resolver: false +go: + description: A database-specific registry supporting curation in the Gene Ontology + download: https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml + example: CHEBI + homepage: http://geneontology.org/ + name: Gene Ontology Registry + prefix: go + provider: false + registry: true + resolver: false +miriam: + description: The Identifiers.org Resolution Service provides consistent access to + life science data using Compact Identifiers. Compact Identifiers consist of an + assigned unique prefix and a local provider designated accession number (prefix:accession). + download: https://registry.api.identifiers.org/resolutionApi/getResolverDataset + example: chebi + formatter: https://registry.identifiers.org/registry/$1 + homepage: https://identifiers.org + name: Identifiers.org + prefix: miriam + provider: false + registry: true + resolver: true + resolver_url: https://identifiers.org/$1:$2 +n2t: + description: An ARK resolver as well as resolver built with common prefxies as in + Identifiers.org + download: https://n2t.net/e/cdl_ebi_prefixes.yaml + example: chebi + homepage: https://n2t.net + name: Name-to-Thing + prefix: n2t + provider: false + registry: true + resolver: true + resolver_url: https://n2t.net/$1:$2 +ncbi: + description: A database-specific registry supporting curation in the NCBI GenBank + and related NCBI resources + example: ECOCYC + homepage: https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/ + name: National Center for Biotechnology Information Registry + prefix: ncbi + provider: false + registry: true + resolver: false +obofoundry: + description: The mission of the OBO Foundry is to develop a family of interoperable + ontologies that are both logically well-formed and scientifically accurate. + download: http://www.obofoundry.org/registry/ontologies.yml + example: chebi + formatter: http://www.obofoundry.org/ontology/$1 + homepage: http://www.obofoundry.org/ + name: OBO Foundry + prefix: obofoundry + provider: false + registry: true + resolver: false +ols: + description: 'The Ontology Lookup Service (OLS) is a repository for biomedical ontologies + that aims to provide a single point of access to the latest ontology versions. ' + example: chebi + formatter: https://www.ebi.ac.uk/ols/ontologies/$1 + homepage: https://www.ebi.ac.uk/ols + name: Ontology Lookup Service + prefix: ols + provider: true + registry: true + resolver: false +prefixcommons: + description: A registry of commonly used prefixes in the life sciences and linked + data + download: https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/commons_context.jsonld + example: CHEBI + homepage: https://prefixcommons.org + name: Prefix Commons + prefix: prefixcommons + provider: false + registry: true + resolver: false +uniprot.database: + description: The cross-references section of UniProtKB entries displays explicit + and implicit links to databases such as nucleotide sequence databases, model organism + databases and genomics and proteomics resources. + download: https://www.uniprot.org/database/?format=rdf + example: '0174' + formatter: https://www.uniprot.org/database/DB-$1 + homepage: https://www.uniprot.org/database/ + name: UniProt Cross-ref database + prefix: uniprot.database + provider: false + registry: true + resolver: false +wikidata: + description: An open, community-curated knowledgebase that contains several properties + corresponding to resources listed in other biomedical registries. + example: P683 + formatter: https://www.wikidata.org/wiki/Property:$1 + homepage: https://www.wikidata.org + name: Wikidata Property + prefix: wikidata + provider: true + registry: true + resolver: false diff --git a/docs/_data/registry.tsv b/docs/_data/registry.tsv new file mode 100644 index 000000000..148859832 --- /dev/null +++ b/docs/_data/registry.tsv @@ -0,0 +1,1181 @@ +identifier name homepage description pattern example email formatter download synonyms deprecated bioportal miriam n2t obofoundry ols prefixcommons uniprot.database wikidata part_of provides +3dmet 3D Metabolites http://www.3dmet.dna.affrc.go.jp/ 3DMET is a database collecting three-dimensional structures of natural metabolites. ^B\d{5}$ B00162 https://identifiers.org/3dmet:$1 False 3dmet 3dmet 3DMET P2796 +aao Amphibian gross anatomy http://github.com/seger/aao david.c.blackburn@gmail.com True AAO AAO +abs Annotated Regulatory Binding Sites The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography. ^A\d+$ A0014 https://identifiers.org/abs:$1 False abs abs ABS +ac Activity Streams http://www.w3.org/ns/activitystreams http://www.w3.org/ns/activitystreams#$1 False +aceview.worm Aceview Worm AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression. ^[a-z0-9-]+$ aap-1 https://identifiers.org/aceview.worm:$1 False aceview.worm aceview.worm ACEVIEW.WORM +addgene Addgene Plasmid Repository Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world. ^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$ 50943 https://identifiers.org/addgene:$1 False addgene addgene +adw Animal natural history and life history http://www.animaldiversity.org Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology. ^[A-Z_a-z]+$ Lycalopex_vetulus adw_geeks@umich.edu https://identifiers.org/adw:$1 True ADW adw adw ADW ADW +aeo Anatomical Entity Ontology https://github.com/obophenotype/human-developmental-anatomy-ontology/ AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology ^\d{7}$ 0001017 J.Bard@ed.ac.uk https://www.ebi.ac.uk/ols/ontologies/aeo/terms?iri=http://purl.obolibrary.org/obo/AEO_$1 https://raw.githubusercontent.com/obophenotype/human-developmental-anatomy-ontology/master/src/ontology/aeo.obo AEO_RETIRED False AEO AEO aeo AEO +affy.probeset Affymetrix Probeset An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration. \d{4,}((_[asx])?_at)? 243002_at https://identifiers.org/affy.probeset:$1 False affy.probeset affy.probeset AFFY.PROBESET +afo Allotrope Merged Ontology Suite Allotrope Merged Ontology Suite https://www.ebi.ac.uk/ols/ontologies/afo/terms?iri=http://purl.obolibrary.org/obo/AFO_$1 False AFO afo +aftol.taxonomy Assembling the Fungal Tree of Life - Taxonomy The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species. ^\d+$ 959 https://identifiers.org/aftol.taxonomy:$1 False aftol.taxonomy aftol.taxonomy AFTOL.TAXONOMY +agricola Agricultural Online Access http://agricola.nal.usda.gov/ AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century. ^\d+$ 50018 https://identifiers.org/agricola:$1 AGR|AGRICOLA_ID False agricola agricola AGRICOLA +agro Agronomy Ontology https://github.com/AgriculturalSemantics/agro Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments m.a.laporte@cgiar.org https://www.ebi.ac.uk/ols/ontologies/agro/terms?iri=http://purl.obolibrary.org/obo/AGRO_$1 False AGRO AGRO agro AGRO +aism Ontology for the Anatomy of the Insect SkeletoMuscular system https://github.com/insect-morphology/aism The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research. entiminae@gmail.com https://www.ebi.ac.uk/ols/ontologies/aism/terms?iri=http://purl.obolibrary.org/obo/AISM_$1 False AISM AISM aism +allergome Allergome Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources. ^\d+$ 1948 https://identifiers.org/allergome:$1 False allergome allergome ALLERGOME Allergome +alzforum.mutation Alzforum Mutations app-d678n-tottori https://www.alzforum.org/mutations/$1 Alzforum_mut False +amoebadb AmoebaDB AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^EDI_\d+$ EDI_244000 https://identifiers.org/amoebadb:$1 False amoebadb amoebadb AMOEBADB +amphx The Amphioxus Development and Anatomy Ontology https://github.com/EBISPOT/amphx_ontology An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum). hescriva@obs-banyuls.fr https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http://purl.obolibrary.org/obo/AMPHX_$1 False AMPHX AMPHX amphx +antibodyregistry Antibody Registry The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information. ^\d{6}$ 493771 https://identifiers.org/antibodyregistry:$1 False antibodyregistry antibodyregistry ANTIBODYREGISTRY +antweb Ant Database http://www.antweb.org AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures. ^casent\d+(\-D\d+)?$ casent0106247 https://identifiers.org/antweb:$1 False antweb antweb ANTWEB +aop AOPWiki International repository of Adverse Outcome Pathways. ^\d+$ 98 https://identifiers.org/aop:$1 False aop aop AOP +aop.events AOPWiki (Key Event) International repository of Adverse Outcome Pathways. ^\d+$ 3 https://identifiers.org/aop.events:$1 False aop.events aop.events AOP.EVENTS +aop.relationships AOPWiki (Key Event Relationship) International repository of Adverse Outcome Pathways. ^\d+$ 5 https://identifiers.org/aop.relationships:$1 False aop.relationships aop.relationships AOP.RELATIONSHIPS +aop.stressor AOPWiki (Stressor) International repository of Adverse Outcome Pathways. ^\d+$ 9 https://identifiers.org/aop.stressor:$1 False aop.stressor aop.stressor AOP.STRESSOR +apd Antimicrobial Peptide Database The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides. ^\d{5}$ 01001 https://identifiers.org/apd:$1 False apd apd APD +aphidbase.transcript AphidBase Transcript AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information. ^ACYPI\d{6}(-RA)?$ ACYPI000159 https://identifiers.org/aphidbase.transcript:$1 False aphidbase.transcript aphidbase.transcript APHIDBASE.TRANSCRIPT +apid.interactions APID Interactomes APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier. ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$ P01116 https://identifiers.org/apid.interactions:$1 False apid.interactions apid.interactions APID.INTERACTIONS uniprot +apo Ascomycete phenotype ontology http://www.yeastgenome.org/ A structured controlled vocabulary for the phenotypes of Ascomycete fungi ^\d{7}$ 0000184 stacia@stanford.edu https://www.yeastgenome.org/observable/APO:$1 YPO False APO APO apo YPO +apollo_sv Apollo Structured Vocabulary https://github.com/ApolloDev/apollo-sv Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models MBrochhausen@uams.edu https://www.ebi.ac.uk/ols/ontologies/apollo_sv/terms?iri=http://purl.obolibrary.org/obo/APOLLO_SV_$1 False APOLLO-SV APOLLO_SV apollo_sv +arachnoserver ArachnoServer ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information. ^AS\d{6}$ AS000060 https://identifiers.org/arachnoserver:$1 False arachnoserver arachnoserver ARACHNOSERVER ArachnoServer +araport Arabidopsis Information Portal https://www.araport.org/ AT1G01010 https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1 False Araport +ardb Antibiotic Resistance Genes Database The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes. ^[A-Z_]{3}[0-9]{4,}$ CAE46076 https://identifiers.org/ardb:$1 False ardb ardb ARDB +ark Archival Resource Key An Archival Resource Key (ARK) is a Uniform Resource Locator (URL) that is a multi-purpose persistent identifier for information objects of any type. ^(ark\:)/*[0-9A-Za-z]+(?:/[\w/.=*+@\$-]*)?(?:\?.*)?$ /12345/fk1234 https://identifiers.org/ARK:$1 False ark ark ARK +aro Antibiotic Resistance Ontology https://github.com/arpcard/aro Antibiotic resistance genes and mutations ^\d{7}$ 1000001 card@mcmaster.ca https://www.ebi.ac.uk/ols/ontologies/aro/terms?iri=http://purl.obolibrary.org/obo/ARO_$1 False ARO ARO aro ARO +arrayexpress ArrayExpress ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations. ^[AEP]-\w{4}-\d+$ E-MEXP-1712 https://identifiers.org/arrayexpress:$1 False arrayexpress arrayexpress ARRAYEXPRESS +arrayexpress.platform ArrayExpress Platform ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results. ^[AEP]-\w{4}-\d+$ A-GEOD-50 https://identifiers.org/arrayexpress.platform:$1 False arrayexpress.platform arrayexpress.platform ARRAYEXPRESS.PLATFORM +arraymap ArrayMap arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome. ^[\w\-:,]{3,64}$ icdom:8500_3 https://identifiers.org/arraymap:$1 False arraymap arraymap ARRAYMAP +arxiv arXiv arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology. ^(\w+(\-\w+)?(\.\w+)?)?\d{4,7}(\.\d+(v\d+)?)?$ 0807.4956v1 https://identifiers.org/arxiv:$1 False arxiv arxiv ARXIV +asap A Systematic Annotation Package for Community Analysis of Genomes https://asap.genetics.wisc.edu/asap/ASAP1.htm ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources. ^[A-Za-z0-9-]+$ ABE-0009634 https://identifiers.org/asap:$1 False asap asap ASAP +ascl Astrophysics Source Code Library The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001). ^[0-9\.]+$ 1801.012 https://identifiers.org/ascl:$1 False ascl ascl ASCL +asin Amazon Standard Identification Number Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue. ^[0-9]{10}$ 0471491039 https://identifiers.org/asin:$1 False asin asin ASIN +aspgd.locus Aspergillus Genome Database http://www.aspergillusgenome.org/ The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information. ^[A-Za-z_0-9]+$ ASPL0000349247 https://identifiers.org/aspgd.locus:$1 False aspgd.locus aspgd.locus ASPGD.LOCUS +aspgd.protein AspGD Protein The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information. ^[A-Za-z_0-9]+$ ASPL0000349247 https://identifiers.org/aspgd.protein:$1 False aspgd.protein aspgd.protein ASPGD.PROTEIN +asrp Arabidopsis Small RNA Project https://asrp.danforthcenter.org/ ASRP1423 False +atc Anatomical Therapeutic Chemical Classification System The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels. ^[A-Z](\d+([A-Z]{1,2}(\d+)?)?)?$ A10BA02 https://identifiers.org/atc:$1 ATC_code|ATTC False ATC atc atc ATC P267 +atcc American Type Culture Collection https://www.lgcstandards-atcc.org The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences. ^\d+$ 11303 https://identifiers.org/atcc:$1 ATCC number|ATCC|ATCC(in host)|ATCC(dna) False atcc atcc ATCC +atcvet Anatomical Therapeutic Chemical Vetinary The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use. ^Q[A-Z0-9]+$ QJ51RV02 https://identifiers.org/atcvet:$1 False atcvet atcvet ATCVET +atfdb.family Animal TFDB Family The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found. ^\w+$ CUT https://identifiers.org/atfdb.family:$1 False atfdb.family atfdb.family ATFDB.FAMILY +atol Animal Trait Ontology for Livestock http://www.atol-ontology.com ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production. pylebail@rennes.inra.fr https://www.ebi.ac.uk/ols/ontologies/atol/terms?iri=http://purl.obolibrary.org/obo/ATOL_$1 False ATOL atol +autdb AutDB AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder. ^[A-Z]+[A-Z-0-9]{2,}$ ADA https://identifiers.org/autdb:$1 False autdb autdb AUTDB +bacdive Bacterial Diversity Metadatabase BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity. ^[0-9]+$ 131392 https://identifiers.org/bacdive:$1 False bacdive bacdive +bacmap.biog BacMap Biography BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information. ^\d+$ 1050 https://identifiers.org/bacmap.biog:$1 False bacmap.biog bacmap.biog BACMAP.BIOG +bacmap.map BacMap Map BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information. ^\w+(\_)?\d+(\.\d+)?$ AP011135 https://identifiers.org/bacmap.map:$1 False bacmap.map bacmap.map BACMAP.MAP +bactibase Bactibase: a database dedicated to bacteriocins http://bactibase.hammamilab.org BAC045 http://bactibase.hammamilab.org/$1 False +bams Brain Architecture Knowledge Management System Neuroanatomical Ontology https://bams1.org True +bao BioAssay Ontology http://bioassayontology.org The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. ^\d{7}$ 0002989 https://identifiers.org/bao:$1 BAO False BAO bao bao bao BAO +bcio The Behaviour Change Intervention Ontology https://www.humanbehaviourchange.org/ The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation. https://www.ebi.ac.uk/ols/ontologies/bcio/terms?iri=http://purl.obolibrary.org/obo/BCIO_$1 False BCI-O bcio +bco Biological Collections Ontology https://github.com/tucotuco/bco An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. rlwalls2008@gmail.com https://www.ebi.ac.uk/ols/ontologies/bco/terms?iri=http://purl.obolibrary.org/obo/BCO_$1 False BCO BCO bco BCO +bdgp.est Berkeley Drosophila Genome Project EST database http://www.fruitfly.org/EST/index.shtml The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI). ^\w+(\.)?(\d+)?$ EY223054.1 https://identifiers.org/bdgp.est:$1 False bdgp.est bdgp.est BDGP.EST +bdgp.insertion BDGP insertion DB BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element. ^\w+$ KG09531 https://identifiers.org/bdgp.insertion:$1 False bdgp.insertion bdgp.insertion BDGP.INSERTION +bdsc Bloomington Drosophila Stock Center The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research. ^\d+$ 33607 https://identifiers.org/bdsc:$1 False bdsc bdsc +beetlebase Tribolium Genome Database -- Insertion http://www.beetlebase.org/ BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications. ^TC\d+$ TC010103 https://identifiers.org/beetlebase:$1 False beetlebase beetlebase BEETLEBASE +begdb Benchmark Energy & Geometry Database The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods. ^[0-9]+$ 4214 https://identifiers.org/begdb:$1 False begdb begdb BEGDB +bel Biological Expression Language 9-1-1 Complex SCOMP|SFAM|SDIS|SCHEM False +bfo Basic Formal Ontology http://ifomis.org/bfo/ The upper level ontology upon which OBO Foundry ontologies are built. ^\d{7}$ 0000001 phismith@buffalo.edu https://www.ebi.ac.uk/ols/ontologies/bfo/terms?iri=http://purl.obolibrary.org/obo/BFO_$1 False BFO BFO bfo BFO +bgee.family Bgee family Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species. ^(ENSFM|ENSGTV:)\d+$ ENSFM00500000270089 https://identifiers.org/bgee.family:$1 False bgee.family bgee.family BGEE.FAMILY +bgee.gene Bgee gene Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee. ^[A-Za-z]+\d+$ FBgn0000015 https://identifiers.org/bgee.gene:$1 False bgee.gene bgee.gene BGEE.GENE +bgee.organ Bgee organ Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures. ^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$ EHDAA:2185 https://identifiers.org/bgee.organ:$1 False bgee.organ bgee.organ BGEE.ORGAN +bgee.stage Bgee stage Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages. ^(FBvd|XtroDO|HsapDO|MmusDO)\:\d+$ HsapDO:0000004 https://identifiers.org/bgee.stage:$1 False bgee.stage bgee.stage BGEE.STAGE +bigg.compartment BiGG Compartment BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments. ^[a-z_A-Z]+$ c https://identifiers.org/bigg.compartment:$1 False bigg.compartment bigg.compartment BIGG.COMPARTMENT +bigg.metabolite BiGG Metabolite BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes. ^[a-z_A-Z0-9]+$ 12dgr161 https://identifiers.org/bigg.metabolite:$1 False bigg.metabolite bigg.metabolite BIGG.METABOLITE +bigg.model BiGG Model BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models. ^[a-z_A-Z0-9]+$ iECABU_c1320 https://identifiers.org/bigg.model:$1 False bigg.model bigg.model BIGG.MODEL +bigg.reaction BiGG Reaction BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions. ^[a-z_A-Z0-9]+$ 13GS https://identifiers.org/bigg.reaction:$1 False bigg.reaction bigg.reaction BIGG.REACTION +bila Bilateria anatomy False BILA BILA +bindingdb BindingDB BindingDB is the first public database of protein-small molecule affinity data. ^\w\d+$ e999 https://identifiers.org/bindingdb:$1 False bindingdb bindingdb BINDINGDB BindingDB +biocarta.pathway BioCarta Pathway BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps. ^([hm]\_)?\w+Pathway$ h_aktPathway https://identifiers.org/biocarta.pathway:$1 False biocarta.pathway biocarta.pathway BIOCARTA.PATHWAY +biocatalogue.service BioCatalogue Service The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all. ^\d+$ 614 https://identifiers.org/biocatalogue.service:$1 False biocatalogue.service biocatalogue.service BIOCATALOGUE.SERVICE +biocyc BioCyc collection of metabolic pathway databases http://biocyc.org/ BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms. ^[A-Z-0-9]+(\:)?[A-Za-z0-9+_.%-:]+$ ECOLI:CYT-D-UBIOX-CPLX https://identifiers.org/biocyc:$1 False biocyc biocyc BIOCYC BioCyc +biogrid BioGRID BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe. ^\d+$ 31623 https://identifiers.org/biogrid:$1 False biogrid biogrid BIOGRID BioGRID +biolink BioLink Model A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations. ^\S+$ Gene https://identifiers.org/biolink:$1 False biolink +biominder Bio-MINDER Tissue Database Database of the dielectric properties of biological tissues. ^[a-z0-9\-]+$ aef4c195-9cf9-46db-a12a-7cfd1ff3eec3 https://identifiers.org/biominder:$1 False biominder biominder BIOMINDER +biomodels.db BioModels Database https://www.ebi.ac.uk/biomodels/ BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests. ^((BIOMD|MODEL)\d{10})|(BMID\d{12})$ BIOMD0000000048 https://identifiers.org/biomodels.db:$1 BIOMD False biomodels.db biomodels.db BIOMODELS.DB +biomodels.kisao Kinetic Simulation Algorithm Ontology http://co.mbine.org/standards/kisao The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment. ^KISAO_\d+$ KISAO_0000057 biomodels-net-support@lists.sf.net https://identifiers.org/biomodels.kisao:$1 kisao False KISAO biomodels.kisao biomodels.kisao KISAO kisao KISAO +biomodels.teddy Terminology for Description of Dynamics The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology. ^TEDDY_\d{7}$ TEDDY_0000066 https://identifiers.org/biomodels.teddy:$1 teddy False TEDDY biomodels.teddy biomodels.teddy teddy BIOMODELS.TEDDY +biomodels.vocabulary SBML RDF Vocabulary Vocabulary used in the RDF representation of SBML models. ^[A-Za-z]+$ rateRule https://identifiers.org/biomodels.vocabulary:$1 False biomodels.vocabulary biomodels.vocabulary BIOMODELS.VOCABULARY +bionumbers BioNumbers BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data. ^\d+$ 104674 https://identifiers.org/bionumbers:$1 False bionumbers bionumbers BIONUMBERS +bioportal BioPortal BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies. ^\d+$ 1046 https://identifiers.org/bioportal:$1 False bioportal bioportal BIOPORTAL +bioproject BioProject BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories. ^PRJ[DEN][A-Z]\d+$ PRJDB3 https://identifiers.org/bioproject:$1 False bioproject bioproject BIOPROJECT +bioregistry Bioregistry https://bioregistry.io The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database. bioregistry cthoyt@gmail.com https://bioregistry.io/registry/$1 False +bioregistry.collection Bioregistry Collections https://bioregistry.io/collection Manually curated collections of resources stored in the bioregistry ^\d{7}$ 0000001 cthoyt@gmail.com https://bioregistry.io/collection/$1 False +biorxiv bioRxiv https://www.biorxiv.org/ False +biosample BioSample The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation. ^SAM[NED](\w)?\d+$ SAMEA2397676 https://identifiers.org/biosample:$1 False biosample biosample BIOSAMPLE +biosimulators BioSimulators BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML). [a-zA-Z0-9-_]+ vcell https://identifiers.org/biosimulators:$1 False biosimulators +biostudies BioStudies database The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication. ^S-[A-Z]{4}[A-Z\d\-]+$ S-EPMC6266652 https://identifiers.org/biostudies:$1 False biostudies biostudies +biosystems BioSystems The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources. ^\d+$ 001 https://identifiers.org/biosystems:$1 False biosystems biosystems BIOSYSTEMS +biotools BioTools Tool and data services registry. ^[A-Za-z0-9\_]*$ uniprotkb https://identifiers.org/biotools:$1 False biotools biotools BIOTOOLS +birnlex Biomedical Informatics Research Network Lexicon False BIRNLEX +bitterdb.cpd BitterDB Compound BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds. ^\d+$ 46 https://identifiers.org/bitterdb.cpd:$1 False bitterdb.cpd bitterdb.cpd BITTERDB.CPD +bitterdb.rec BitterDB Receptor BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors. ^\d+$ 1 https://identifiers.org/bitterdb.rec:$1 False bitterdb.rec bitterdb.rec BITTERDB.REC +bmrb Biological Magnetic Resonance Data Bank BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy. ^(bmr|bmse|bmst)?[0-9]{1,6}$ 15000 https://identifiers.org/bmrb:$1 False bmrb BMRB +bmrb.restraint NMR Restraints Grid https://restraintsgrid.bmrb.io/NRG/MRGridServlet The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively. 28789 https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1 False +bold.taxonomy Barcode of Life database http://www.barcodinglife.com The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information. ^\d+$ 27267 https://identifiers.org/bold.taxonomy:$1 False bold.taxonomy bold.taxonomy BOLD.TAXONOMY +bpdb Bio-Pesticides DataBase https://sitem.herts.ac.uk/aeru/bpdb/index.htm 2404 https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm False +brenda BRENDA, The Comprehensive Enzyme Information System http://www.brenda-enzymes.info BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data. ^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d+\.\d+\.\d+\.\d+))$ 1.1.1.1 https://identifiers.org/brenda:$1 False brenda brenda BRENDA BRENDA +broad Broad Fungal Genome Initiative Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae. ^S\d+$ S7000002168151102 https://identifiers.org/broad:$1 False broad broad BROAD +bs Biosapiens False +bspo Biological Spatial Ontology https://github.com/obophenotype/biological-spatial-ontology An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces ^\d{7}$ 0000029 cjmungall@lbl.gov https://www.ebi.ac.uk/ols/ontologies/bspo/terms?iri=http://purl.obolibrary.org/obo/BSPO_$1 https://raw.githubusercontent.com/obophenotype/biological-spatial-ontology/master/bspo.obo False BSPO BSPO bspo BSPO +bto BRENDA tissue / enzyme source http://www.brenda-enzymes.org The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms. ^BTO:\d{7}$ 0000590 a.chang@tu-bs.de https://identifiers.org/BTO:$1 BTO False BTO bto bto BTO bto BTO P5501 +bugbase.expt BugBase Expt BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments. ^\d+$ 288 https://identifiers.org/bugbase.expt:$1 False bugbase.expt bugbase.expt BUGBASE.EXPT +bugbase.protocol BugBase Protocol BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols. ^\d+$ 67 https://identifiers.org/bugbase.protocol:$1 False bugbase.protocol bugbase.protocol BUGBASE.PROTOCOL +bykdb Bacterial Tyrosine Kinase Database The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information. ^[A-Z0-9]+$ A0A009E7X8 https://identifiers.org/bykdb:$1 False bykdb bykdb BYKDB +cabri Common Access to Biological Resources and Information Project CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it. ^([A-Za-z]+)?(\_)?([A-Za-z-]+)\:([A-Za-z0-9 ]+)$ dsmz_mutz-id:ACC 291 https://identifiers.org/cabri:$1 False cabri cabri CABRI +cadsr Cancer Data Standards Registry and Repository The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR. ^[0-9]*$ 3771992 https://identifiers.org/cadsr:$1 False cadsr cadsr +caloha CALIPHO Group Ontology of Human Anatomy ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo False +cameo Continuous Automated Model Evaluation The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB. ^[0-9\-_]+$ 2019-08-03_00000089_1 https://identifiers.org/cameo:$1 False cameo cameo CAMEO +caps CAPS-DB CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps. ^\d+$ 434 https://identifiers.org/caps:$1 False caps caps CAPS +caro Common Anatomy Reference Ontology https://github.com/obophenotype/caro/ An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species 0000000 haendel@ohsu.edu https://www.ebi.ac.uk/ols/ontologies/caro/terms?iri=http://purl.obolibrary.org/obo/CARO_$1 https://github.com/obophenotype/caro/raw/master/src/ontology/caro.owl False CARO CARO caro CARO +cas CAS Chemical Registry http://www.cas.org/expertise/cascontent/registry/index.html CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information. ^\d{1,7}\-\d{2}\-\d$ 50-00-0 https://identifiers.org/cas:$1 CASID|SECONDARY_CAS_RN|CAS_RN|cas_id False cas cas CAS P231 +cath CATH Protein Structural Domain Superfamily CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence. ^[1-6]\.[0-9]+\.[0-9]+\.[0-9]+$ 1.10.8.10 https://identifiers.org/cath:$1 False cath cath CATH +cath.domain CATH domain The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains. ^\w+$ 1cukA01 https://identifiers.org/cath.domain:$1 False cath.domain cath.domain CATH.DOMAIN +cath.superfamily CATH superfamily The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification. ^\d+(\.\d+(\.\d+(\.\d+)?)?)?$ 1.10.10.200 https://identifiers.org/cath.superfamily:$1 False cath.superfamily cath.superfamily CATH.SUPERFAMILY +cattleqtldb Animal Genome Cattle QTL The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs. ^\d+$ 4685 https://identifiers.org/cattleqtldb:$1 False cattleqtldb cattleqtldb CATTLEQTLDB +cazy Carbohydrate Active EnZYmes http://www.cazy.org/ The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features. ^(GT|GH|PL|CE|CBM)\d+(\_\d+)?$ GT10 https://identifiers.org/cazy:$1 False cazy cazy CAZY CAZy +cba Chinese Biological Abstracts 375364 https://europepmc.org/article/CBA/$1 False +cbioportal The cBioPortal for Cancer Genomics The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets. ^[a-z0-9\_]+$ laml_tcga_pub https://identifiers.org/cbioportal:$1 False cbioportal cbioportal +ccdc CCDC Number The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC. ^\d{6,7}$ 1829126 https://identifiers.org/ccdc:$1 False ccdc +ccds Consensus CDS The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations. ^CCDS\d+\.\d+$ CCDS13573.1 https://identifiers.org/ccds:$1 False ccds ccds CCDS CCDS +cco Cell Cycle Ontology http://www.semantic-systems-biology.org/apo The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process. ^CCO\:\w+$ 0000003 vladimir.n.mironov@gmail.com https://identifiers.org/CCO:$1 False CCO cco cco cco CCO +cdao Comparative Data Analysis Ontology https://github.com/evoinfo/cdao The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character. balhoff@renci.org https://www.ebi.ac.uk/ols/ontologies/cdao/terms?iri=http://purl.obolibrary.org/obo/CDAO_$1 False CDAO CDAO cdao CDAO +cdd Conserved Domain Database at NCBI https://www.ncbi.nlm.nih.gov/cdd The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. ^(cd)?\d{5}$ cd00400 https://identifiers.org/cdd:$1 False cdd cdd CDD CDD +cdno Compositional Dietary Nutrition Ontology https://github.com/Southern-Cross-Plant-Science/cdno None l.andres.hernandez.18@student.scu.edu.au https://www.ebi.ac.uk/ols/ontologies/cdno/terms?iri=http://purl.obolibrary.org/obo/CDNO_$1 False CDNO cdno +cdpd Canadian Drug Product Database The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN). ^\d+$ 63250 https://identifiers.org/cdpd:$1 False cdpd cdpd CDPD +cellimage Cell Image Library The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes. ^\d+$ 24801 https://identifiers.org/cellimage:$1 False cellimage cellimage CELLIMAGE +cellosaurus Cellosaurus The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines. ^CVCL_[A-Z0-9]{4}$ CVCL_0440 https://identifiers.org/cellosaurus:$1 CVCL False cellosaurus cellosaurus CELLOSAURUS P3289 +ceph Cephalopod Ontology https://github.com/obophenotype/cephalopod-ontology An anatomical and developmental ontology for cephalopods ^\d{7}$ 0000109 cjmungall@lbl.gov https://www.ebi.ac.uk/ols/ontologies/ceph/terms?iri=http://purl.obolibrary.org/obo/CEPH_$1 https://raw.githubusercontent.com/obophenotype/cephalopod-ontology/master/ceph.obo False CEPH CEPH ceph CEPH +cgd Candida Genome Database http://www.candidagenome.org/ The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products. ^CAL\d{7}$ CAL0003079 https://identifiers.org/cgd:$1 False cgd cgd CGD CGD +cgnc Chicken Gene Nomenclature Consortium http://birdgenenames.org/cgnc/ 10087 http://birdgenenames.org/cgnc/GeneReport?id=$1 BirdBase|CGNC False +cgsc Coli Genetic Stock Center http://cgsc.biology.yale.edu/ The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature. ^\d+$ 74 https://identifiers.org/cgsc:$1 False cgsc cgsc CGSC +charprot CharProt CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession. ^CH_\d+$ CH_001923 https://identifiers.org/charprot:$1 False charprot charprot CHARPROT +chebi Chemical Entities of Biological Interest http://www.ebi.ac.uk/chebi Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds. ^CHEBI:\d+$ 24867 amalik@ebi.ac.uk https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:$1 ChEBI|CHEBI|CHEBIID False CHEBI chebi chebi CHEBI chebi CHEBI P683 +chembl ChEMBL ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. ^CHEMBL\d+$ CHEMBL4303805 https://identifiers.org/chembl:$1 chembl|ChEMBL|ChEMBL_ID False chembl +chembl.compound ChEMBL compound https://www.ebi.ac.uk/chembl ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. ^CHEMBL\d+$ CHEMBL465070 https://identifiers.org/chembl.compound:$1 False chembl.compound chembl.compound CHEMBL.COMPOUND P592 chembl +chembl.target ChEMBL target ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature. ^CHEMBL\d+$ CHEMBL3467 https://identifiers.org/chembl.target:$1 False chembl.target chembl.target CHEMBL.TARGET ChEMBL chembl +chemdb ChemDB ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds. ^\d+$ 3966782 https://identifiers.org/chemdb:$1 False chemdb chemdb CHEMDB +chemidplus ChemIDplus ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest. ^\d+\-\d+\-\d+$ 57-27-2 https://identifiers.org/chemidplus:$1 ChemIDplus False chemidplus chemidplus CHEMIDPLUS +cheminf Chemical Information Ontology https://github.com/semanticchemistry/semanticchemistry Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them. egon.willighagen@gmail.com https://www.ebi.ac.uk/ols/ontologies/cheminf/terms?iri=http://purl.obolibrary.org/obo/CHEMINF_$1 https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl False CHEMINF CHEMINF cheminf CHEMINF +chemspider ChemSpider https://www.chemspider.com/ ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources. ^\d+$ 56586 https://identifiers.org/chemspider:$1 Chemspider False chemspider chemspider CHEMSPIDER P661 +chickenqtldb Animal Genome Chicken QTL The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs. ^\d+$ 14362 https://identifiers.org/chickenqtldb:$1 False chickenqtldb chickenqtldb CHICKENQTLDB +chiro ChEBI Integrated Role Ontology https://github.com/obophenotype/chiro CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes. vasilevs@ohsu.edu https://www.ebi.ac.uk/ols/ontologies/chiro/terms?iri=http://purl.obolibrary.org/obo/CHIRO_$1 http://purl.obolibrary.org/obo/chiro.obo False CHIRO CHIRO chiro +chmo Chemical Methods Ontology https://github.com/rsc-ontologies/rsc-cmo CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI). ^\d{7}$ 0002902 batchelorc@rsc.org https://www.ebi.ac.uk/ols/ontologies/chmo/terms?iri=http://purl.obolibrary.org/obo/CHMO_$1 False CHMO CHMO chmo CHMO +cido Coronavirus Infectious Disease Ontology https://github.com/cido-ontology/cido The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment. yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/cido/terms?iri=http://purl.obolibrary.org/obo/CIDO_$1 False CIDO CIDO cido +cio Confidence Information Ontology https://github.com/BgeeDB/confidence-information-ontology An ontology to capture confidence information about annotations. ^\d{7}$ 0000040 bgee@sib.swiss https://www.ebi.ac.uk/ols/ontologies/cio/terms?iri=http://purl.obolibrary.org/obo/CIO_$1 False CIO CIO cio CIO +citexplore CiteXplore C6155 https://europepmc.org/article/CTX/$1 CTX False CTX +cl Cell Ontology https://obophenotype.github.io/cell-ontology/ The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi. ^CL:\d{7}$ 0000062 addiehl@buffalo.edu https://identifiers.org/CL:$1 https://raw.githubusercontent.com/obophenotype/cell-ontology/master/cl-full.obo False CL cl cl CL cl CL P7963 +clao Collembola Anatomy Ontology https://github.com/luis-gonzalez-m/Collembola CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda). lagonzalezmo@unal.edu.co https://www.ebi.ac.uk/ols/ontologies/clao/terms?iri=http://purl.obolibrary.org/obo/CLAO_$1 False CLAO CLAO clao +classyfire ClassyFire ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API. ^C[0-9]{7}$ C0004828 https://identifiers.org/classyfire:$1 False classyfire +cldb Cell Line Database The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories. ^(cl|tum)\d+$ cl3603 https://identifiers.org/cldb:$1 False cldb cldb CLDB +clingene ClinGen Allele Registry https://reg.clinicalgenome.org CA981206459 https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1 False +clinicaltrials ClinicalTrials.gov ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries ^NCT\d{8}$ NCT00222573 https://identifiers.org/clinicaltrials:$1 False clinicaltrials clinicaltrials CLINICALTRIALS +clinvar ClinVar Variant ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier. ^\d+$ 12345 https://identifiers.org/clinvar:$1 False clinvar clinvar ClinVar +clinvar.record ClinVar Record ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession. ^RCV\d+(\.\d+)?$ RCV000033555.3 https://identifiers.org/clinvar.record:$1 False clinvar.record clinvar.record CLINVAR.RECORD +clinvar.submission ClinVar Submission ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession. ^SCV\d+(\.\d+)?$ SCV000151292 https://identifiers.org/clinvar.submission:$1 False clinvar.submission clinvar.submission CLINVAR.SUBMISSION +clinvar.submitter ClinVar Submitter ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs). ^\d+$ 26957 https://identifiers.org/clinvar.submitter:$1 False clinvar.submitter +clo Cell Line Ontology http://www.clo-ontology.org The Cell Line Ontology (CLO) is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns. 0000091 siiraa@umich.edu https://www.ebi.ac.uk/ols/ontologies/clo/terms?iri=http://purl.obolibrary.org/obo/CLO_$1 CLO False CLO CLO clo CLO P2158 +clyh Clytia hemisphaerica Development and Anatomy Ontology https://github.com/EBISPOT/clyh_ontology Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica. lucas.leclere@obs-vlfr.fr https://www.ebi.ac.uk/ols/ontologies/clyh/terms?iri=http://purl.obolibrary.org/obo/CLYH_$1 False CLYH CLYH clyh +cmf CranioMaxilloFacial ontology https://code.google.com/p/craniomaxillofacial-ontology/ engelsta@ohsu.edu False CMF CMF +cmo Clinical measurement ontology http://rgd.mcw.edu/rgdweb/ontology/search.html Morphological and physiological measurement records generated from clinical and model organism research and health programs. ^\d{7}$ 0001350 shimoyama@mcw.edu https://www.ebi.ac.uk/ols/ontologies/cmo/terms?iri=http://purl.obolibrary.org/obo/CMO_$1 False CMO CMO cmo CMO +cmpo Cellular Microscopy Phenotype Ontology http://www.ebi.ac.uk/cmpo CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. jupp@ebi.ac.uk https://www.ebi.ac.uk/ols/ontologies/cmpo/terms?iri=http://purl.obolibrary.org/obo/CMPO_$1 False CMPO cmpo +co_320 Rice ontology http://www.cropontology.org/ontology/CO_320/Rice Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_320/terms?iri=http://purl.obolibrary.org/obo/CO_320_$1 False co_320 +co_321 Wheat ontology http://www.cropontology.org/ontology/CO_321/Wheat Sept 2020 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_321/terms?iri=http://purl.obolibrary.org/obo/CO_321_$1 False co_321 +co_321:root Wheat ontology http://www.cropontology.org/ontology/CO_321:ROOT/Wheat T3 Wheat traits helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_321:root/terms?iri=http://purl.obolibrary.org/obo/CO_321:ROOT_$1 False co_321:root +co_322 Maize ontology http://www.cropontology.org/ontology/CO_322/Maize Maize Trait Dictionary in template 5 - CIMMYT- September 2016 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_322/terms?iri=http://purl.obolibrary.org/obo/CO_322_$1 False co_322 +co_323 Barley ontology http://www.cropontology.org/ontology/CO_323/Barley ICARDA - TDv5 - Sept 2018 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_323/terms?iri=http://purl.obolibrary.org/obo/CO_323_$1 False co_323 +co_324 Sorghum ontology http://www.cropontology.org/ontology/CO_324/Sorghum Sorghum TDv5 March 2021 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_324/terms?iri=http://purl.obolibrary.org/obo/CO_324_$1 False co_324 +co_325 Banana ontology http://www.cropontology.org/ontology/CO_325/Banana Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_325/terms?iri=http://purl.obolibrary.org/obo/CO_325_$1 False co_325 +co_327 Pearl millet ontology http://www.cropontology.org/ontology/CO_327/Pearl%20millet Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_327/terms?iri=http://purl.obolibrary.org/obo/CO_327_$1 False co_327 +co_330 Potato ontology http://www.cropontology.org/ontology/CO_330/Potato CIP - potato ontology - november 2020 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_330/terms?iri=http://purl.obolibrary.org/obo/CO_330_$1 False co_330 +co_331 Sweet Potato ontology http://www.cropontology.org/ontology/CO_331/Sweet%20Potato Sweet Potato Trait Dictionary in template v5 - CIP - November 2019 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_331/terms?iri=http://purl.obolibrary.org/obo/CO_331_$1 False co_331 +co_333 Beet Ontology ontology http://www.cropontology.org/ontology/CO_333/Beet%20Ontology This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017. helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_333/terms?iri=http://purl.obolibrary.org/obo/CO_333_$1 False co_333 +co_334 Cassava ontology http://www.cropontology.org/ontology/CO_334/Cassava Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_334/terms?iri=http://purl.obolibrary.org/obo/CO_334_$1 False co_334 +co_335 Common Bean ontology http://www.cropontology.org/ontology/CO_335/Common%20Bean CIAT Common bean trait dictionary - version August 2014 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_335/terms?iri=http://purl.obolibrary.org/obo/CO_335_$1 False co_335 +co_336 Soybean ontology http://www.cropontology.org/ontology/CO_336/Soybean Soybean Trait Dictionary in template v5 - IITA - July 2015 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_336/terms?iri=http://purl.obolibrary.org/obo/CO_336_$1 False co_336 +co_337 Groundnut ontology http://www.cropontology.org/ontology/CO_337/Groundnut Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS/USDA-ARS - Sept 2019 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_337/terms?iri=http://purl.obolibrary.org/obo/CO_337_$1 False co_337 +co_338 Chickpea ontology http://www.cropontology.org/ontology/CO_338/Chickpea Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_338/terms?iri=http://purl.obolibrary.org/obo/CO_338_$1 False co_338 +co_339 Lentil ontology http://www.cropontology.org/ontology/CO_339/Lentil Lentil Trait Dictionary in template v5 - ICARDA - July 2015 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_339/terms?iri=http://purl.obolibrary.org/obo/CO_339_$1 False co_339 +co_340 Cowpea ontology http://www.cropontology.org/ontology/CO_340/Cowpea Cowpea Trait Dictionary in template v5 - IITA - August 2015 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_340/terms?iri=http://purl.obolibrary.org/obo/CO_340_$1 False co_340 +co_341 Pigeonpea ontology http://www.cropontology.org/ontology/CO_341/Pigeonpea Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_341/terms?iri=http://purl.obolibrary.org/obo/CO_341_$1 False co_341 +co_343 Yam ontology http://www.cropontology.org/ontology/CO_343/Yam version 2019 - pvs helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_343/terms?iri=http://purl.obolibrary.org/obo/CO_343_$1 False co_343 +co_345 Brachiaria ontology http://www.cropontology.org/ontology/CO_345/Brachiaria Brachiaria (forages) ontology TD v5 - Version Oct 2016 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_345/terms?iri=http://purl.obolibrary.org/obo/CO_345_$1 False co_345 +co_346 Mungbean ontology http://www.cropontology.org/ontology/CO_346/Mungbean oct 2016 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_346/terms?iri=http://purl.obolibrary.org/obo/CO_346_$1 False co_346 +co_347 Castor bean ontology http://www.cropontology.org/ontology/CO_347/Castor%20bean March 2017 version helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_347/terms?iri=http://purl.obolibrary.org/obo/CO_347_$1 False co_347 +co_348 Brassica ontology http://www.cropontology.org/ontology/CO_348/Brassica Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France). helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_348/terms?iri=http://purl.obolibrary.org/obo/CO_348_$1 False co_348 +co_350 Oat ontology http://www.cropontology.org/ontology/CO_350/Oat Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_350/terms?iri=http://purl.obolibrary.org/obo/CO_350_$1 False co_350 +co_356 Vitis ontology http://www.cropontology.org/ontology/CO_356/Vitis Grape Ontology including OIV and bioversity descriptors. INRAE Jan 2021 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_356/terms?iri=http://purl.obolibrary.org/obo/CO_356_$1 False co_356 +co_357 Woody Plant Ontology ontology http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE. helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_357/terms?iri=http://purl.obolibrary.org/obo/CO_357_$1 False co_357 +co_358 Cotton ontology http://www.cropontology.org/ontology/CO_358/Cotton Cotton ontology from CottonGen database - June 2019 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_358/terms?iri=http://purl.obolibrary.org/obo/CO_358_$1 False co_358 +co_359 Sunflower ontology http://www.cropontology.org/ontology/CO_359/Sunflower December 2019 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_359/terms?iri=http://purl.obolibrary.org/obo/CO_359_$1 False co_359 +co_360 Sugar Kelp trait ontology http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait Sugar Kelp trait ontology helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_360/terms?iri=http://purl.obolibrary.org/obo/CO_360_$1 False co_360 +co_365 Fababean ontology http://www.cropontology.org/ontology/CO_365/Fababean developed by ICARDA - Dec 2018 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_365/terms?iri=http://purl.obolibrary.org/obo/CO_365_$1 False co_365 +co_366 Bambara groundnut ontology http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut version Dec 2019 helpdesk@cropontology-curationtool.org https://www.ebi.ac.uk/ols/ontologies/co_366/terms?iri=http://purl.obolibrary.org/obo/CO_366_$1 False co_366 +cob Core Ontology for Biology and Biomedicine https://github.com/OBOFoundry/COB COB brings together key terms from a wide range of OBO projects to improve interoperability. bpeters@lji.org https://www.ebi.ac.uk/ols/ontologies/cob/terms?iri=http://purl.obolibrary.org/obo/COB_$1 False COB COB cob +cohd MIMIC III Database https://github.com/MIT-LCP/mimic-omop False +combine.specifications COMBINE specifications The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network. ^\w+(\-|\.|\w)*$ sbgn.er.level-1.version-1.2 https://identifiers.org/combine.specifications:$1 False combine.specifications combine.specifications COMBINE.SPECIFICATIONS +come The Bioinorganic Motif Database MOL000160 https://www.flymine.org/come/entry?gn=$1 False +complexportal Complex Portal database of macromolecular complexes https://www.ebi.ac.uk/complexportal A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases. ^CPX-[0-9]+$ CPX-263 https://identifiers.org/complexportal:$1 ComplexPortal False complexportal complexportal COMPLEXPORTAL ComplexPortal P7718 +comptox CompTox Chemistry Dashboard The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks. ^DTXSID\d+$ DTXSID2021028 https://identifiers.org/comptox:$1 False comptox comptox COMPTOX +compulyeast Compluyeast-2D-DB Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record. ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ O08709 https://identifiers.org/compulyeast:$1 False compulyeast compulyeast COMPULYEAST +conoserver ConoServer ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails. ^\d+$ 2639 https://identifiers.org/conoserver:$1 False conoserver conoserver CONOSERVER ConoServer +conso Curation of Neurodegeneration Supporting Ontology https://pharmacome.github.io/conso/ ^CONSO\d{5}$ CONSO00010 https://pharmacome.github.io/conso/$1 False +coriell Coriell Institute for Medical Research http://ccr.coriell.org/ The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world. ^[A-Z]{2}\d+$ GM17027 https://identifiers.org/coriell:$1 False coriell coriell Coriell +corum CORUM - the Comprehensive Resource of Mammalian protein complexes https://mips.helmholtz-muenchen.de/corum/ The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded. ^\d+$ 100 https://identifiers.org/corum:$1 False corum corum CORUM CORUM +cosmic COSMIC Gene COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes. ^[A-Z0-9]+$ BRAF https://identifiers.org/cosmic:$1 False cosmic cosmic COSMIC +covid19 COVID-19 Ontology Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease. ^\w+_COVID19_[-\w]+$ SFB_COVID19_MW286762 https://identifiers.org/covid19:$1 False COVID-19 covid19 +covoc CoVoc Coronavirus Vocabulary https://github.com/EBISPOT/covoc The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more. https://www.ebi.ac.uk/ols/ontologies/covoc/terms?iri=http://purl.obolibrary.org/obo/COVOC_$1 False covoc +cp Cellular Phenotypes False +cpc Cooperative Patent Classification The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013. ^([A-H,Y]|[A-H, Y]\d{2}|[A-H, Y]\d{2}[A-Z]|[A-H, Y]\d{2}[A-Z]\d{1,3}|[A-H, Y]\d{2}[A-Z]\d{1,3}(\/)?\d{2,})$ A01M1/026 https://identifiers.org/cpc:$1 False cpc cpc CPC +crisprdb CRISPRdb "Repeated CRISPR (""clustered regularly interspaced short palindromic repeats"") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data." ^[0-9]+$ 551115 https://identifiers.org/crisprdb:$1 False crisprdb crisprdb CRISPRDB +cro Contributor Role Ontology https://github.com/data2health/contributor-role-ontology A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability. ^\d{7}$ 0000038 whimar@ohsu.edu https://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_$1 https://raw.githubusercontent.com/data2health/contributor-role-ontology/master/cro.obo False CRO CRO cro CRO +cryoem Cryo Electron Microscopy ontology http://scipion.i2pc.es/ontology/cryoem Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles isanchez@cnb.csic.es https://www.ebi.ac.uk/ols/ontologies/cryoem/terms?iri=http://purl.obolibrary.org/obo/CRYOEM_$1 False CRYOEM cryoem +cryptodb CryptoDB CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^\w+ cgd7_230 https://identifiers.org/cryptodb:$1 False cryptodb cryptodb CRYPTODB +csa Catalytic Site Atlas The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme. ^[0-9][A-Za-z0-9]{3}$ 1a05 https://identifiers.org/csa:$1 False csa csa CSA +csd Cambridge Structural Database The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode. ^[A-Z]{6}(\d{2})?$ PELNAW https://identifiers.org/csd:$1 False csd +csp CRISP Thesaurus 2004-2820 CRISP Thesaurus, 2006|CRISP Thesaurus|CSP2005 False +cst Cancer Staging Terms Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways. ^[A-Za-z0-9_-]+$ Akt_PKB https://identifiers.org/cst:$1 False CST cst cst CST +cst.ab Cell Signaling Technology Antibody Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products. ^\d+$ 3305 https://identifiers.org/cst.ab:$1 False cst.ab cst.ab CST.AB +ctd.chemical CTD Chemical The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. ^[CD]\d+$ D001151 https://identifiers.org/ctd.chemical:$1 False ctd.chemical ctd.chemical CTD.CHEMICAL ctd mesh +ctd.disease CTD Disease The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. ^D\d+$ D053716 https://identifiers.org/ctd.disease:$1 False ctd.disease ctd.disease CTD.DISEASE ctd mesh +ctd.gene CTD Gene The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences. ^\d+$ 101 https://identifiers.org/ctd.gene:$1 False ctd.gene ctd.gene CTD.GENE ctd ncbigene +cteno Ctenophore Ontology https://github.com/obophenotype/ctenophore-ontology An anatomical and developmental ontology for ctenophores (Comb Jellies) ^\d{7}$ 0000047 cjmungall@lbl.gov https://www.ebi.ac.uk/ols/ontologies/cteno/terms?iri=http://purl.obolibrary.org/obo/CTENO_$1 https://raw.githubusercontent.com/obophenotype/ctenophore-ontology/master/cteno.obo False CTENO CTENO cteno CTENO +cto CTO: Core Ontology of Clinical Trials https://github.com/ClinicalTrialOntology/CTO/ The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials. alpha.tom.kodamullil@scai.fraunhofer.de https://www.ebi.ac.uk/ols/ontologies/cto/terms?iri=http://purl.obolibrary.org/obo/CTO_$1 False CTO CTO cto +cubedb Cube db Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available. ^[A-Za-z_0-9]+$ AKR https://identifiers.org/cubedb:$1 False cubedb cubedb CUBEDB +cvdo Cardiovascular Disease Ontology https://github.com/OpenLHS/CVDO An ontology to describe entities related to cardiovascular diseases paul.fabry@usherbrooke.ca https://www.ebi.ac.uk/ols/ontologies/cvdo/terms?iri=http://purl.obolibrary.org/obo/CVDO_$1 False CVDO CVDO cvdo CVDO +d1id DataONE DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences. \S+ 00030692-0FE1-4A1B-955E-A2E55D659267 https://identifiers.org/d1id:$1 False d1id d1id D1ID +dailymed DailyMed DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read. ^[A-Za-z0-9-]+ 973a9333-fec7-46dd-8eb5-25738f06ee54 https://identifiers.org/dailymed:$1 False dailymed dailymed DAILYMED +dandi DANDI: Distributed Archives for Neurophysiology Data Integration "DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable). +DANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data. +These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders." ^\d{6}(/\d+\.\d+\.\d+)?$ 000017 https://identifiers.org/dandi:$1 False dandi +darc Database of Aligned Ribosomal Complexes DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors. ^\d+$ 1250 https://identifiers.org/darc:$1 False darc darc DARC +dashr Database of small human noncoding RNAs DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records. ^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$ hsa-mir-200a https://identifiers.org/dashr:$1 False dashr dashr DASHR +dashr.expression DASHR expression DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression. ^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$ hsa-mir-200a https://identifiers.org/dashr.expression:$1 False dashr.expression dashr.expression DASHR.EXPRESSION +datanator.gene Datanator Gene Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms. ^K[0-9]+$ K00973 https://identifiers.org/datanator.gene:$1 False datanator.gene datanator +datanator.metabolite Datanator Metabolite Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms. ^[A-Z\-]+$ OUYCCCASQSFEME-MRVPVSSYSA-N https://identifiers.org/datanator.metabolite:$1 False datanator.metabolite datanator +datf DATF DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals. ^AT[1-5]G\d{5}(\.\d+)?$ AT1G01030.1 https://identifiers.org/datf:$1 True datf datf DATF +dbd Transcription Factor Database The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins. ^\d+$ 0045310 https://identifiers.org/dbd:$1 False dbd dbd DBD +dbest EST database maintained at the NCBI. https://www.ncbi.nlm.nih.gov/genbank/dbest "The dbEST contains sequence data and other information on ""single-pass"" cDNA sequences, or ""Expressed Sequence Tags"", from a number of organisms." ^([A-Z]+)?\d+(\.\d+)?$ BP100000 https://identifiers.org/dbest:$1 False dbest dbest DBEST +dbg2introns DBG2 Introns The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank. ^\w{1,2}\.(\w{1,2}\.)?[A-Za-z0-9]+$ Cu.me.I1 https://identifiers.org/dbg2introns:$1 False dbg2introns dbg2introns DBG2INTRONS +dbgap Database of Genotypes and Phenotypes The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype. ^phs[0-9]{6}(.v\d+.p\d+)?$ phs000768.v2.p1 https://identifiers.org/dbgap:$1 False dbgap dbgap DBGAP +dbprobe NCBI Probe database Public registry of nucleic acid reagents https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities. ^\d+$ 1000000 https://identifiers.org/dbprobe:$1 False dbprobe dbprobe DBPROBE +dbsnp NCBI dbSNP http://www.ncbi.nlm.nih.gov/projects/SNP The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms. ^rs\d+$ rs121909098 https://identifiers.org/dbsnp:$1 False dbsnp dbsnp dbSNP dbSNP +dc Disease Class 0000598 https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo False DC dc +dcat Data Catalog https://www.w3.org/ns/dcat Dataset http://www.w3.org/ns/dcat#$1 False DCAT dcat +dcterms Dublin Core Metadata Vocabulary title https://dublincore.org/specifications/dublin-core/dcmi-terms/#$1 dc.terms False DCTERMS dcterms +dctypes Dublin Core Types https://dublincore.org/specifications/dublin-core/dcmi-terms/ Collection http://purl.org/dc/dcmitype/$1 False dctypes +ddanat Dictyostelium discoideum anatomy http://dictybase.org/ A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum ^\d{7}$ 0000006 pfey@northwestern.edu https://www.ebi.ac.uk/ols/ontologies/ddanat/terms?iri=http://purl.obolibrary.org/obo/DDANAT_$1 False DDANAT DDANAT ddanat DDANAT +ddpheno Dictyostelium discoideum phenotype ontology http://dictybase.org/ A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum. ^\d{7}$ 0001417 pfey@northwestern.edu https://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_$1 https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo False DDPHENO DDPHENO ddpheno DDPHENO +degradome Degradome Database The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced. ^[AMCST][0-9x][0-9]$ Ax1 https://identifiers.org/degradome:$1 False degradome degradome DEGRADOME +depod Human Dephosphorylation Database The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources. ^[A-Z0-9]+$ PTPN1 https://identifiers.org/depod:$1 False depod depod DEPOD DEPOD hgnc.symbol +dermo Human Dermatological Disease Ontology False DERMO +dev.ga4ghdos Development Data Object Service Assists in resolving data across cloud resources. ^[a-zA-Z0-9\-:#\.]+$ 23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00 https://identifiers.org/dev.ga4ghdos:$1 False dev.ga4ghdos dev.ga4ghdos DEV.GA4GHDOS +dicom DICOM Controlled Terminology http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html DICOM Controlled Terminology dclunie@dclunie.com https://www.ebi.ac.uk/ols/ontologies/dicom/terms?iri=http://purl.obolibrary.org/obo/DICOM_$1 False DCM dicom +dictybase dictyBase http://dictybase.org A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics DDB0191090 dictyBase False dictyBase dictyBase +dictybase.est dictyBase Expressed Sequence Tag The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information. ^DDB\d+$ DDB0016567 https://identifiers.org/dictybase.est:$1 False dictybase.est dictybase.est DICTYBASE.EST dictybase +dictybase.gene Dictybase Gene The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information. ^DDB_G\d+$ DDB_G0267522 https://identifiers.org/dictybase.gene:$1 False dictybase.gene dictybase.gene DICTYBASE.GENE dictybase +did Decentralized Identifier DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary. ^did:[a-z0-9]+:[A-Za-z0-9.\-:]+$ sov:WRfXPg8dantKVubE3HX8pw https://identifiers.org/DID:$1 False did did +dideo Drug-drug Interaction and Drug-drug Interaction Evidence Ontology https://github.com/DIDEO/DIDEO The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology mbrochhausen@gmail.com https://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_$1 False DIDEO DIDEO dideo DIDEO +dip Database of Interacting Proteins The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions ^DIP(\:)?\-\d{1,}[ENXS]$ DIP-743N https://identifiers.org/dip:$1 False dip dip DIP DIP +diseasesdb Diseases Database 1784 False P557 +disprot DisProt DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature. ^DP\d{5}$ DP00003 https://identifiers.org/disprot:$1 False disprot disprot DISPROT DisProt +disprot.region DisProt region DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature. ^DP\d{5}r\d{3}$ DP00086r013 https://identifiers.org/disprot.region:$1 False disprot.region +dlxb Linear double stranded DNA sequences DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences. ^[A-Z0-9]{6,7}$ 6VDC956 https://identifiers.org/dlxb:$1 False dlxb dlx +dlxc Circular double stranded DNA sequences composed DOULIX lab-tested standard biological parts, in this case, full length constructs. ^[A-Z0-9]{6,7}$ M77F7JM https://identifiers.org/dlxc:$1 False dlxc dlx +doi Digital Object Identifier http://dx.doi.org/ The Digital Object Identifier System is for identifying content objects in the digital environment. ^(doi\:)?\d{2}\.\d{4}.*$ 10.1038/nbt1156 https://identifiers.org/doi:$1 False doi doi DOI +doid Human Disease Ontology http://www.disease-ontology.org The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. ^DOID:\d+$ 0110974 lynn.schriml@gmail.com https://identifiers.org/DOID:$1 https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo do False DOID doid doid DOID doid DOID P699 +dommino Database of Macromolecular Interactions http://korkinlab.org/dommino DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides. ^[0-9][A-Za-z0-9]{3}$ 2GC4 https://identifiers.org/dommino:$1 False dommino dommino DOMMINO +door Database for Prokaryotic Operons DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes. ^\d+$ 1398574 https://identifiers.org/door:$1 False door door DOOR +doqcs.model Database of Quantitative Cellular Signaling: Model The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models. ^\d+$ 57 https://identifiers.org/doqcs.model:$1 False doqcs.model doqcs.model DOQCS.MODEL doqcs +doqcs.pathway Database of Quantitative Cellular Signaling: Pathway The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways. ^\d+$ 131 https://identifiers.org/doqcs.pathway:$1 False doqcs.pathway doqcs.pathway DOQCS.PATHWAY doqcs +dpo Drosophila Phenotype Ontology http://purl.obolibrary.org/obo/fbcv An ontology for the description of Drosophila melanogaster phenotypes. cp390@cam.ac.uk https://www.ebi.ac.uk/ols/ontologies/dpo/terms?iri=http://purl.obolibrary.org/obo/DPO_$1 False DPO FBcv dpo +dpv Description of Plant Viruses Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene. ^\d+$ 100 https://identifiers.org/dpv:$1 False dpv dpv DPV +dragondb.allele DragonDB Allele DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information. ^\w+$ cho https://identifiers.org/dragondb.allele:$1 False dragondb.allele dragondb.allele DRAGONDB.ALLELE dragondb +dragondb.dna DragonDB DNA DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information. ^\d\w+$ 3hB06 https://identifiers.org/dragondb.dna:$1 False dragondb.dna dragondb.dna DRAGONDB.DNA dragondb +dragondb.locus DragonDB Locus DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information. ^\w+$ DEF https://identifiers.org/dragondb.locus:$1 False dragondb.locus dragondb.locus DRAGONDB.LOCUS dragondb +dragondb.protein DragonDB Protein DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information. ^\w+$ AMDEFA https://identifiers.org/dragondb.protein:$1 False dragondb.protein dragondb.protein DRAGONDB.PROTEIN dragondb +dron The Drug Ontology https://bitbucket.org/uamsdbmi/dron.git An ontology to support comparative effectiveness researchers studying claims data. hoganwr@gmail.com https://www.ebi.ac.uk/ols/ontologies/dron/terms?iri=http://purl.obolibrary.org/obo/DRON_$1 False DRON DRON dron DRON +drsc Drosophila RNAi Screening Center The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene. ^DRSC\d+$ DRSC05221 https://identifiers.org/drsc:$1 False drsc drsc DRSC +drugbank DrugBank http://www.drugbank.ca The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information. ^DB\d{5}$ DB14938 https://identifiers.org/drugbank:$1 DrugBank|DRUGBANK_ID False drugbank drugbank DrugBank DrugBank P715 +drugbank.salt DrugBank Salts http://www.drugbank.ca ^DBSALT\d{6}$ DBSALT001211 https://go.drugbank.com/salts/$1 drugbank.target False DRUGBANK.TARGET drugbank +drugbankv4.target DrugBank Target v4 The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database. ^BE\d{7}$ BE0000048 https://identifiers.org/drugbankv4.target:$1 False drugbankv4.target drugbankv4.target DRUGBANKV4.TARGET drugbank +drugcentral Drug Central http://drugcentral.org 307 http://drugcentral.org/drugcard/$1 Drug_Central False DrugCentral +dto Drug Target Ontology https://github.com/DrugTargetOntology/DTO False DTO +duo Data Use Ontology https://github.com/EBISPOT/DUO DUO is an ontology which represent data use conditions. mcourtot@gmail.com https://www.ebi.ac.uk/ols/ontologies/duo/terms?iri=http://purl.obolibrary.org/obo/DUO_$1 False DUO DUO duo DUO +ecacc European Collection of Authenticated Cell Culture https://www.phe-culturecollections.org.uk/collections/ecacc.aspx 90062901 https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1 False +ecao The Echinoderm Anatomy and Development Ontology https://github.com/echinoderm-ontology/ecao_ontology None ettensohn@cmu.edu https://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_$1 False ECAO ECAO ecao +eccode Enzyme Nomenclature https://enzyme.expasy.org/ The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions. ^\d{1,2}(\.\d{0,3}){0,3}$ 1.1.1.1 https://identifiers.org/ec-code:$1 EC|EC-CODE|EC_CODE|ECCODE|ec-code|intenz False ec-code ec-code EC P591 +ecg Electrocardiogram Ontology ECGOntology False ECG +echobase EchoBASE post-genomic database for Escherichia coli https://www.york.ac.uk/res/thomas/ EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products. ^EB\d+$ EB0170 https://identifiers.org/echobase:$1 False echobase echobase ECHOBASE EchoBASE +ecmdb E. coli Metabolite Database ^ECMDB\d+$ ECMDB00005 http://ecmdb.ca/compounds/$1 ECMDB False +eco Evidence ontology https://github.com/evidenceontology/evidenceontology/ Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity. ECO:\d{7}$ 0007807 mgiglio@som.umaryland.edu https://identifiers.org/ECO:$1 False ECO eco eco ECO eco ECO +ecocore An ontology of core ecological entities https://github.com/EcologicalSemantics/ecocore Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms. ^\d+$ 00000001 p.buttigieg@gmail.com https://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_$1 False ECOCORE ECOCORE ecocore ECOCORE +ecocyc EcoCyc http://ecocyc.org/ AICARTRANSIMPCYCLO-CPLX https://biocyc.org/gene?id=$1 False +ecogene Database of Escherichia coli Sequence and Function http://ecogene.org The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites. ^EG\d+$ EG10173 https://identifiers.org/ecogene:$1 False ecogene ecogene EcoGene +ecoliwiki EcoliWiki from EcoliHub http://ecoliwiki.net/ EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes. ^[A-Za-z0-9-]+$ aaeA https://identifiers.org/ecoliwiki:$1 False ecoliwiki ecoliwiki ECOLIWIKI +ecto Environmental conditions, treatments and exposures ontology https://github.com/EnvironmentOntology/environmental-exposure-ontology ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology). ^\d{7}$ 0000001 annethessen@gmail.com https://www.ebi.ac.uk/ols/ontologies/ecto/terms?iri=http://purl.obolibrary.org/obo/ECTO_$1 False ECTO ECTO ecto +ecyano.entity E-cyanobacterium entity E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities. ^\d+$ 23 https://identifiers.org/ecyano.entity:$1 False ecyano.entity ecyano.entity ECYANO.ENTITY ecyano +ecyano.experiment E-cyanobacterium Experimental Data E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments. ^\d+$ 18 https://identifiers.org/ecyano.experiment:$1 False ecyano.experiment ecyano +ecyano.model E-cyanobacterium model E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models. ^\d+$ 26 https://identifiers.org/ecyano.model:$1 False ecyano.model ecyano.model ECYANO.MODEL +ecyano.rule E-cyanobacterium rule E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules. ^\d+$ 56 https://identifiers.org/ecyano.rule:$1 False ecyano.rule ecyano.rule ECYANO.RULE ecyano +edam Bioinformatics operations, data types, formats, identifiers and topics http://edamontology.org EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications). ^(data|topic|operation|format)\_\d{4}$ data_1664 edam@elixir-dk.org https://identifiers.org/edam:$1 False EDAM edam edam edam EDAM +efo Experimental Factor Ontology http://www.ebi.ac.uk/efo The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team. ^\d{7}$ 0005147 efo-users@lists.sourceforge.net https://identifiers.org/efo:$1 http://www.ebi.ac.uk/efo/efo.obo False EFO efo efo EFO efo EFO +ega.dataset European Genome-phenome Archive Dataset https://ega-archive.org/ The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'. ^EGAD\d{11}$ EGAD00000000001 https://identifiers.org/ega.dataset:$1 False ega.dataset ega.dataset EGA.DATASET +ega.study European Genome-phenome Archive Study The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets. ^EGAS\d{11}$ EGAS00000000001 https://identifiers.org/ega.study:$1 False ega.study ega.study EGA.STUDY +eggnog eggNOG eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories). ^\w+$ veNOG12876 https://identifiers.org/eggnog:$1 False eggnog eggnog EGGNOG eggNOG +ehda Human developmental anatomy, timed version http://genex.hgu.mrc.ac.uk/ J.Bard@ed.ac.uk True EHDA EHDA EHDA +ehdaa Human developmental anatomy, abstract version J.Bard@ed.ac.uk True EHDAA EHDAA EHDAA +ehdaa2 Human developmental anatomy, abstract https://github.com/obophenotype/human-developmental-anatomy-ontology A structured controlled vocabulary of stage-specific anatomical structures of the developing human. ^\d{7}$ 0000000 J.Bard@ed.ac.uk https://www.ebi.ac.uk/ols/ontologies/ehdaa2/terms?iri=http://purl.obolibrary.org/obo/EHDAA2_$1 HDAA2|EHDAA2_RETIRED|RETIRED_EHDAA2 False EHDAA2 EHDAA2 ehdaa2 EHDAA2 +elm Eukaryotic Linear Motif Resource Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances. ^[A-Za-z_0-9]+$ CLV_MEL_PAP_1 https://identifiers.org/elm:$1 False elm elm ELM ELM +emapa Mouse Developmental Anatomy Ontology http://www.informatics.jax.org/expression.shtml An ontology for mouse anatomy covering embryonic development and postnatal stages. ^\d+$ 26753 Terry.Hayamizu@jax.org https://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_$1 EMAPA_RETIRED False EMAPA EMAPA emapa EMAPA +emdb Electron Microscopy Data Bank The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community. ^EMD-\d{4}$ EMD-1001 https://identifiers.org/emdb:$1 False emdb emdb EMDB +empiar Electron Microscopy Public Image Archive https://www.ebi.ac.uk/pdbe/emdb EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure 10595 https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1 False +ena.embl European Nucleotide Archive http://www.ebi.ac.uk/ena/ The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers. ^[A-Z]+[0-9]+(\.\d+)?$ BN000065 https://identifiers.org/ena.embl:$1 ena False ena.embl ena.embl ENA.EMBL +encode ENCODE: Encyclopedia of DNA Elements The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns. ^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$ ENCSR163RYW https://identifiers.org/encode:$1 False encode encode ENCODE +enm eNanoMapper Ontology http://www.enanomapper.net/ The eNanoMapper project (www.enanomapper.net) is creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. > This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO. https://www.ebi.ac.uk/ols/ontologies/enm/terms?iri=http://purl.obolibrary.org/obo/ENM_$1 False ENM enm +ensembl Ensembl database of automatically annotated genomic data https://www.ensembl.org Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms. ^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$ ENSG00000139618 https://identifiers.org/ensembl:$1 Ensembl False ensembl ensembl ENSEMBL Ensembl P594 +ensembl.bacteria Ensembl Bacteria Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes. ^((EB\w+)|([A-Z0-9]+\_[A-Z0-9]+))$ MU9_3181 https://identifiers.org/ensembl.bacteria:$1 False ensembl.bacteria ensembl.bacteria ENSEMBL.BACTERIA EnsemblBacteria +ensembl.fungi Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi. http://fungi.ensembl.org/ Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes. ^[A-Z-a-z0-9]+$ CADAFLAT00006211 https://identifiers.org/ensembl.fungi:$1 False ensembl.fungi ensembl.fungi ENSEMBL.FUNGI EnsemblFungi +ensembl.metazoa Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa. http://metazoa.ensembl.org/ Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes. ^\w+(\.)?\d+$ FBtr0084214 https://identifiers.org/ensembl.metazoa:$1 False ensembl.metazoa ensembl.metazoa ENSEMBL.METAZOA EnsemblMetazoa +ensembl.plant Ensembl Plants Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes. ^\w+(\.\d+)?(\.\d+)?$ AT1G73965 https://identifiers.org/ensembl.plant:$1 False ensembl.plant ensembl.plant ENSEMBL.PLANT +ensembl.protist Ensembl Protists Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes. ^\w+$ PF3D7_1328700 https://identifiers.org/ensembl.protist:$1 False ensembl.protist ensembl.protist ENSEMBL.PROTIST +ensemblglossary Ensembl Glossary http://ensembl.org/glossary The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used. https://www.ebi.ac.uk/ols/ontologies/ensemblglossary/terms?iri=http://purl.obolibrary.org/obo/ENSEMBLGLOSSARY_$1 False ensemblglossary +envipath enviPath enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products. ^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$ 32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea https://identifiers.org/envipath:$1 False envipath +envo Environment Ontology http://environmentontology.org/ The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations. ^ENVO:\d{7,8}$ 09200010 p.buttigieg@gmail.com https://identifiers.org/ENVO:$1 False ENVO envo envo ENVO envo ENVO +eol Environment Ontology for Livestock http://www.atol-ontology.com L'ontologie EOL décrit les conditions d'environnement des élevages d'animaux domestiques. Elle décrit plus particulièrement les modalités de l'alimentation, de l'environnement, de la structure des élevages et des systèmes d'élevage pylebail@rennes.inra.fr https://www.ebi.ac.uk/ols/ontologies/eol/terms?iri=http://purl.obolibrary.org/obo/EOL_$1 False EOL eol +epcc European Paediatric Cardiac Codes False +epd Eukaryotic Promoter Database http://epd.vital-it.ch/ The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis. ^[A-Z-_0-9]+$ TA_H3 https://identifiers.org/epd:$1 False epd epd EPD EPD +erm European Registry of Materials The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project. ^ERM[0-9]{8}$ ERM00000044 https://identifiers.org/erm:$1 False erm erm +ero eagle-i resource ontology https://open.med.harvard.edu/wiki/display/eaglei/Ontology An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens. 0001655 Marc_Ciriello@hms.harvard.edu https://www.ebi.ac.uk/ols/ontologies/ero/terms?iri=http://purl.obolibrary.org/obo/ERO_$1 False ERO ERO ero ERO +erv Human Endogenous Retrovirus Database Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features. ^[A-Za-z0-9\-\_]+$ THE1B https://identifiers.org/erv:$1 False erv erv ERV +eu89h JRC Data Catalogue The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union. ^[a-z0-9\-_]+$ jrc-eurl-ecvam-chemagora https://identifiers.org/eu89h:$1 False eu89h eu89h EU89H +euclinicaltrials EU Clinical Trials "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004. +It also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population." ^\d{4}\-\d{6}\-\d{2}$ 2008-005144-16 https://identifiers.org/euclinicaltrials:$1 False euclinicaltrials euclinicaltrials EUCLINICALTRIALS +eupath VEuPathDB ontology https://github.com/VEuPathDB-ontology/VEuPathDB-ontology The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available. stoeckrt@pennmedicine.upenn.edu https://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_$1 False EUPATH EUPATH eupath EUPATH +ev eVOC (Expressed Sequence Annotation for Humans) http://www.evocontology.org/ evoc@sanbi.ac.za True EV EV +evm eVOC mouse development stage True +exac.gene ExAC Gene The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information. ^ENSG\d{11}$ ENSG00000169174 https://identifiers.org/exac.gene:$1 False exac.gene exac.gene EXAC.GENE +exac.transcript ExAC Transcript The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information. ^ENST\d{11}$ ENST00000407236 https://identifiers.org/exac.transcript:$1 False exac.transcript exac.transcript EXAC.TRANSCRIPT +exac.variant ExAC Variant The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information. ^\d{1,2}\-\d+\-[GATC]\-[GATC]$ 22-46615880-T-C https://identifiers.org/exac.variant:$1 False exac.variant exac.variant EXAC.VARIANT +exo Exposure ontology http://ctdbase.org/help/exposureHelp.jsp Vocabularies for describing exposure data to inform understanding of environmental health. ^\d{7}$ 0000078 cjmattin@ncsu.edu https://www.ebi.ac.uk/ols/ontologies/exo/terms?iri=http://purl.obolibrary.org/obo/EXO_$1 ExO False EXO ExO exo EXO +facebase FaceBase Data Repository FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects. ^FB\d{8}$ FB00000917 https://identifiers.org/facebase:$1 False facebase facebase FACEBASE +fairsharing FAIRsharing The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies. ^bsg-[dscp]?\d{6}$ bsg-000052 https://identifiers.org/fairsharing:$1 False fairsharing fairsharing FAIRSHARING +faldo Feature Annotation Location Description Ontology http://biohackathon.org/resource/faldo ForwardStrandPosition http://biohackathon.org/resource/faldo#$1 False FALDO faldo +fao Fungal gross anatomy https://github.com/obophenotype/fungal-anatomy-ontology/ A structured controlled vocabulary for the anatomy of fungi. ^\d{7}$ 0000001 mah79@cam.ac.uk https://www.ebi.ac.uk/ols/ontologies/fao/terms?iri=http://purl.obolibrary.org/obo/FAO_$1 False FAO FAO fao FAO +fbbi Biological Imaging Methods Ontology http://cellimagelibrary.org/ A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. ^\d+$ 00000268 dorloff@ncmir.ucsd.edu https://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBBI_$1 FBbi False FBbi FBbi fbbi FBbi +fbbt Drosophila gross anatomy http://purl.obolibrary.org/obo/fbbt An ontology of Drosophila melanogaster anatomy. ^\d{8}$ 00007294 cp390@cam.ac.uk https://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBBT_$1 FBbt_root|FBbt False FB-BT FBbt fbbt FBbt +fbcv FlyBase Controlled Vocabulary http://purl.obolibrary.org/obo/fbcv A miscellaneous ontology of terms used for curation in FlyBase, including the DPO. ^\d{7}$ 0000586 cp390@cam.ac.uk https://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBCV_$1 https://raw.githubusercontent.com/FlyBase/flybase-controlled-vocabulary/master/fbcv.obo FBcv False FB-CV FBcv fbcv FBcv +fbdv Drosophila development http://purl.obolibrary.org/obo/fbdv An ontology of Drosophila melanogaster developmental stages. ^\d{8}$ 00000000 cp390@cam.ac.uk https://www.ebi.ac.uk/ols/ontologies/fbdv/terms?iri=http://purl.obolibrary.org/obo/FBDV_$1 FBdv False FB-DV FBdv fbdv FBdv +fbol International Fungal Working Group Fungal Barcoding. http://www.fungalbarcoding.org/ DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms. ^\d+$ 2224 https://identifiers.org/fbol:$1 False fbol fbol FBOL +fbql Flybase Quantitative Loci False fbql +fbtc Flybase Cell Line False +fideo Food Interactions with Drugs Evidence Ontology https://gitub.u-bordeaux.fr/erias/fideo The Food Interactions with Drugs Evidence Ontology (FIDEO) represents Food-Drug Interactions and underlying interaction mechanisms described in scientific publications, drug and adverse effects databases, and drug interactions compendia. The ontology builds on previous efforts from the FoodOn, DRON, ChEBI, and DIDEO ontologies as well as the Thériaque database. This ontology is maintained at https://gitub.u-bordeaux.fr/erias/fideo, and requests for changes or additions should be filed at the issue tracker there. georgeta.bordea@u-bordeaux.fr https://www.ebi.ac.uk/ols/ontologies/fideo/terms?iri=http://purl.obolibrary.org/obo/FIDEO_$1 False FIDEO FIDEO fideo +fishbase.species FishBase 6472 False P938 +fix Physico-chemical methods and properties An ontology of physico-chemical methods and properties. ^\d{7}$ 0000390 https://www.ebi.ac.uk/ols/ontologies/fix/terms?iri=http://purl.obolibrary.org/obo/FIX_$1 False FIX FIX fix FIX +flopo Flora Phenotype Ontology https://github.com/flora-phenotype-ontology/flopoontology Traits and phenotypes of flowering plants occurring in digitized Floras robert.hoehndorf@kaust.edu.sa https://www.ebi.ac.uk/ols/ontologies/flopo/terms?iri=http://purl.obolibrary.org/obo/FLOPO_$1 False FLOPO FLOPO flopo FLOPO +flowrepository FlowRepository FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field. ^FR\-FCM\-\w{4}$ FR-FCM-ZYGW https://identifiers.org/flowrepository:$1 False flowrepository flowrepository +flybase FlyBase http://flybase.org/ FlyBase is the database of the Drosophila Genome Projects and of associated literature. ^FB\w{2}\d{7}$ FBgn0011293 https://identifiers.org/fb:$1 FB|FlyBase False fb FlyBase FlyBase P3852 +fma Foundational Model of Anatomy http://si.washington.edu/projects/fma The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. ^FMA:\d+$ 63189 mejino@u.washington.edu https://identifiers.org/FMA:$1 FMAID|FMA_RETIRED False FMA fma fma FMA fma FMA +foaf Friend of a Friend http://xmlns.com/foaf/0.1/$1 False FOAF foaf +fobi Food-Biomarker Ontology FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data polcaes@gmail.com https://www.ebi.ac.uk/ols/ontologies/fobi/terms?iri=http://purl.obolibrary.org/obo/FOBI_$1 False FOBI FOBI fobi +foodb.compound FooDB Compound https://foodb.ca/ FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds. ^FDB\d+$ FDB002100 https://identifiers.org/foodb.compound:$1 foodb False foodb.compound foodb.compound FOODB.COMPOUND +foodon The Food Ontology https://foodon.org/ FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies. ^FOODON:[0-9]{8}$ 03307879 damion_dooley@sfu.ca https://identifiers.org/FOODON:$1 False FOODON foodon foodon FOODON foodon FOODON +fovt FuTRES Ontology of Vertebrate Traits https://github.com/futres/fovt None rlwalls2008@gmail.com https://www.ebi.ac.uk/ols/ontologies/fovt/terms?iri=http://purl.obolibrary.org/obo/FOVT_$1 False FOVT FOVT fovt +fplx FamPlex https://sorgerlab.github.io/famplex/ FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships. ^[a-zA-Z0-9][A-Za-z0-9_]+$ GPIb_IX_V https://sorgerlab.github.io/famplex/$1 famplex False FPLX fplx fplx FPLX +fsnp F-SNP The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification. ^rs\d+$ rs17852708 https://identifiers.org/fsnp:$1 False fsnp fsnp FSNP +funcbase.fly FuncBase Fly Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data. ^\d+$ 10194 https://identifiers.org/funcbase.fly:$1 False funcbase.fly funcbase.fly FUNCBASE.FLY +funcbase.human FuncBase Human Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data. ^\d+$ 119514 https://identifiers.org/funcbase.human:$1 False funcbase.human funcbase.human FUNCBASE.HUMAN +funcbase.mouse FuncBase Mouse Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse. ^\d+$ 1351341 https://identifiers.org/funcbase.mouse:$1 False funcbase.mouse funcbase.mouse FUNCBASE.MOUSE +funcbase.yeast FuncBase Yeast Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast. ^\d+$ 2701 https://identifiers.org/funcbase.yeast:$1 False funcbase.yeast funcbase.yeast FUNCBASE.YEAST +fungidb FungiDB FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina. ^[A-Za-z_0-9]+$ CNBG_0001 https://identifiers.org/fungidb:$1 False fungidb fungidb FUNGIDB +fyler Fyler False +fypo Fission Yeast Phenotype Ontology https://github.com/pombase/fypo A formal ontology of phenotypes observed in fission yeast. ^\d{7}$ 0001707 mah79@cam.ac.uk https://www.ebi.ac.uk/ols/ontologies/fypo/terms?iri=http://purl.obolibrary.org/obo/FYPO_$1 http://purl.obolibrary.org/obo/fypo.obo False FYPO FYPO fypo FYPO +ga4ghdos Data Object Service Assists in resolving data across cloud resources. ^[a-zA-Z0-9\-:#/\.]+$ dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d https://identifiers.org/ga4ghdos:$1 False ga4ghdos ga4ghdos GA4GHDOS +gabi Network of Different Plant Genomic Research Projects http://www.gabipd.org/information/about.shtml GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'. ^\w+$ 2679240 https://identifiers.org/gabi:$1 False gabi gabi GABI +galen Galen Ontology False GALEN +gard Genetic and Rare Diseases Information Center 6038 GARD|Genetic and Rare Diseases Information Center False P4317 +gateway Health Data Research Innovation Gateway The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access. ^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$ fd8d0743-344a-4758-bb97-f8ad84a37357 https://identifiers.org/gateway:$1 False gateway +gaz Gazetteer http://environmentontology.github.io/gaz/ A gazetteer constructed on ontological principles ^\d{8}$ 00620027 lschriml@som.umaryland.edu https://www.ebi.ac.uk/ols/ontologies/gaz/terms?iri=http://purl.obolibrary.org/obo/GAZ_$1 http://purl.obolibrary.org/obo/gaz.obo False GAZ GAZ gaz GAZ P6778 +gbif Global Biodiversity Information Facility 4238 https://www.gbif.org/species/$1 False P846 +gc Genetic Code https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1 gc_id False +gcst GWAS Catalog The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide. ^GCST\d{6}\d*$ GCST000035 https://identifiers.org/gcst:$1 False gcst gcst +gdc Genomic Data Commons Data Portal The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis. ^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$ ae8c77fe-e6c8-44d5-8265-4a38c637bbef https://identifiers.org/gdc:$1 False gdc gdc GDC +gdsc Genomics of Drug Sensitivity in Cancer The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies. ^[0-9]+$ 1242 https://identifiers.org/gdsc:$1 False gdsc gdsc +gecko Genomics Cohorts Knowledge Ontology https://github.com/IHCC-cohorts/GECKO An ontology to represent genomics cohort attributes. rbca.jackson@gmail.com https://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_$1 False GECKO GECKO gecko +genatlas Genatlas GenAtlas is a database containing information on human genes, markers and phenotypes. ^\w+$ HBB https://identifiers.org/genatlas:$1 False genatlas genatlas GENATLAS GenAtlas +genbank GenBank https://www.ncbi.nlm.nih.gov/genbank/ U49845 https://www.ncbi.nlm.nih.gov/nucleotide/$1 False GenBank GenBank +genecards GeneCards The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene. ^[A-Za-z-0-9_]+(\@)?$ ABL1 https://identifiers.org/genecards:$1 False genecards genecards GENECARDS GeneCards +genedb GeneDB http://www.genedb.org/gene/ "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the ""Pathogen Genomics"" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed." ^[\w\d\.-]*$ LinJ.20.0070 https://identifiers.org/genedb:$1 False genedb genedb GENEDB GeneDB +genefarm GeneFarm GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products. ^\d+$ 4892 https://identifiers.org/genefarm:$1 False genefarm genefarm GENEFARM +genepio Genomic Epidemiology Ontology http://genepio.org/ The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks. damion_dooley@sfu.ca https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_$1 False GENEPIO genepio GENEPIO +genetree GeneTree Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl. ^ENSGT\d+$ ENSGT00550000074763 https://identifiers.org/genetree:$1 False genetree genetree GENETREE GeneTree +genewiki Gene Wiki The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI. ^\d+$ 1017 https://identifiers.org/genewiki:$1 False genewiki genewiki GENEWIKI GeneWiki +geno Genotype Ontology https://github.com/monarch-initiative/GENO-ontology/ "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. + +Documentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013" ^\d{7}$ 0000632 mhb120@gmail.com https://www.ebi.ac.uk/ols/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_$1 https://raw.githubusercontent.com/monarch-initiative/GENO-ontology/develop/geno-full.obo False GENO GENO geno GENO +genpept GenPept The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank. ^\w{3}\d{5}(\.\d+)?$ CAA71118.1 https://identifiers.org/genpept:$1 False genpept genpept GENPEPT +genprop Genome Properties Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome. ^GenProp\d+$ GenProp0699 https://identifiers.org/genprop:$1 False genprop genprop GENPROP +geo NCBI Gene Expression Omnibus http://www.ncbi.nlm.nih.gov/geo/ The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval. ^G(PL|SM|SE|DS)\d+$ GDS1234 https://identifiers.org/geo:$1 False geo geo +geogeo Geographical Entity Ontology https://github.com/ufbmi/geographical-entity-ontology/wiki "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in ""The US declared war on Germany"" vs. the US in ""The plane entered US airspace""." ^GEO_[0-9]{9}$ GEO_000000021 hoganwr@gmail.com https://identifiers.org/geogeo:$1 False GEO geogeo GEO geo GEO +gexo Gene Expression Ontology http://www.semantic-systems-biology.org/apo Gene Expression Ontology vladimir.n.mironov@gmail.com https://www.ebi.ac.uk/ols/ontologies/gexo/terms?iri=http://purl.obolibrary.org/obo/GEXO_$1 False GEXO gexo +ghr Genetics Home Reference saddan https://medlineplus.gov/genetics/condition/$1 False +giardiadb GiardiaDB GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^\w+$ GL50803_102438 https://identifiers.org/giardiadb:$1 False giardiadb giardiadb GIARDIADB +glida.gpcr GLIDA GPCR The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors. ^[A-Z-_0-9]+$ ACM1_HUMAN https://identifiers.org/glida.gpcr:$1 False glida.gpcr glida.gpcr GLIDA.GPCR +glida.ligand GLIDA Ligand The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands. ^L\d+$ L000001 https://identifiers.org/glida.ligand:$1 False glida.ligand glida.ligand GLIDA.LIGAND +glycoepitope GlycoEpitope GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes. ^EP\d{4}$ EP0311 https://identifiers.org/glycoepitope:$1 False glycoepitope glycoepitope GLYCOEPITOPE +glycomedb GlycomeDB GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links. ^\w+$ G77500AY https://identifiers.org/glycomedb:$1 False glycomedb glycomedb GLYCOMEDB +glycopost GlycoPOST "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their ""raw/processed"" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines." ^GPST[0-9]{6}$ GPST000024 https://identifiers.org/glycopost:$1 False glycopost +glygen GlyGen: Computational and Informatics Resources for Glycoscience https://glygen.org/glycan/ G24361QY https://glygen.org/glycan/$1 False GlyGen +glytoucan GlyTouCan GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data. ^G[0-9]{5}[A-Z]{2}$ G00054MO https://identifiers.org/glytoucan:$1 False glytoucan glytoucan GLYTOUCAN +gmd Golm Metabolome Database Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena. ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ 68513255-fc44-4041-bc4b-4fd2fae7541d https://identifiers.org/gmd:$1 False gmd gmd GMD +gmd.analyte Golm Metabolome Database Analyte Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes. ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ 4f0fa9b6-514f-4ff4-98cc-0009bc08eb80 https://identifiers.org/gmd.analyte:$1 False gmd.analyte gmd.analyte GMD.ANALYTE +gmd.gcms Golm Metabolome Database GC-MS spectra Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra. ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ 53d583d8-40c6-40e1-9296-23f821cd77a5 https://identifiers.org/gmd.gcms:$1 False gmd.gcms gmd.gcms GMD.GCMS +gmd.profile Golm Metabolome Database Profile Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues. ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ 10b38aaf-b977-4950-85b8-f4775f66658d https://identifiers.org/gmd.profile:$1 False gmd.profile gmd.profile GMD.PROFILE +gmd.ref Golm Metabolome Database Reference Substance Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances. ^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$ 8cf84adb-b4db-4807-ac98-0004247c35df https://identifiers.org/gmd.ref:$1 False gmd.ref gmd.ref GMD.REF +gmelin Gmelins Handbuch der anorganischen Chemie ^[1-9][0-9]{3,6}$ 1466 False P1578 +gno Glycan Naming and Subsumption Ontology (GNOme) https://gnome.glyomics.org/ An ontology for glycans based on GlyTouCan, but organized by subsumption. ^\d{8}$ 10004892 nje5@georgetown.edu https://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_$1 False GNO GNO gno +gnpis GnpIS GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. ^[A-Za-z0-9]+$ AY109603 https://identifiers.org/gnpis:$1 False gnpis gnpis GNPIS +go Gene Ontology http://geneontology.org/ The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism. ^GO:\d{7}$ 0032571 suzia@stanford.edu https://identifiers.org/GO:$1 http://purl.obolibrary.org/obo/go.obo gobp|gocc|gomf|gobpid|goccid|gomfid False GO go go GO go GO GO P686 +go.model Gene Ontology Causal Assembly Model http://www.geneontology.org/gocam 5fce9b7300001250 noctua.geneontology.org/editor/graph/gomodel:$1 False +go.ref Gene Ontology Database references http://current.geneontology.org/metadata/gorefs/index.html "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of ""GO content"" meetings at which substantial changes in the ontologies are discussed and made." ^GO_REF:\d{7}$ 0000041 https://identifiers.org/GO_REF:$1 False go_ref go.ref GO_REF +goa Gene Ontology Annotation Database Identifier http://www.ebi.ac.uk/GOA/ The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups. ^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$ P12345 https://identifiers.org/goa:$1 False goa goa GOA +goeco GO Evidence Code http://geneontology.org/docs/guide-go-evidence-codes/ False +gold Genomes Online Database The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. ^[A-Z][a-z][0-9]+$ Gs0000008 https://identifiers.org/gold:$1 False gold +gold.genome GOLD genome "- DEPRECATION NOTE - +Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. + +The GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes." ^(Gi|Gc)\d+$ Gi07796 https://identifiers.org/gold.genome:$1 False gold.genome gold.genome GOLD.GENOME +gold.meta GOLD metadata "- DEPRECATION NOTE - +Please, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. + +The GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples." ^Gm\d+$ Gm00047 https://identifiers.org/gold.meta:$1 False gold.meta gold.meta GOLD.META +google.patent Google Patents Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date. ^[A-Z]{2}\d+([A-Z])?$ US4145692 https://identifiers.org/google.patent:$1 patent False google.patent google.patent GOOGLE.PATENT +google.scholar Google Scholar Researcher ID False +gorel GO Relations ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl False +gpcrdb G protein-coupled receptor database The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models. ^\w+$ RL3R1_HUMAN https://identifiers.org/gpcrdb:$1 False gpcrdb gpcrdb GPCRDB GPCRDB +gpmdb Global Proteome Machine Database The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. ^GPM\d+$ GPM32310002988 https://identifiers.org/gpmdb:$1 False gpmdb gpmdb GPMDB +gramene.gene Gramene Gene http://www.gramene.org/ Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene. ^GR\:\d+$ GR:0080039 https://identifiers.org/gramene.gene:$1 GR_GENE False gramene.gene gramene.gene GRAMENE.GENE +gramene.growthstage Gramene Growth Stage Ontology Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene. ^\d{7}$ 0007133 http://www.gramene.org/db/ontology/search?id=GRO:$1 False gramene.growthstage gramene.growthstage GRAMENE.GROWTHSTAGE +gramene.protein Gramene protein http://www.gramene.org/ Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene. ^\d+$ 78073 https://identifiers.org/gramene.protein:$1 GR_PROTEIN False gramene.protein gramene.protein GRAMENE.PROTEIN +gramene.qtl Gramene QTL http://www.gramene.org/ Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene. ^\w+$ CQG5 https://identifiers.org/gramene.qtl:$1 GR_QTL False gramene.qtl gramene.qtl GRAMENE.QTL +gramene.taxonomy Gramene Taxonomy Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene. ^GR\_tax\:\d+$ GR_tax:013681 https://identifiers.org/gramene.taxonomy:$1 False gramene.taxonomy gramene.taxonomy GRAMENE.TAXONOMY +greengenes 16S rRNA gene database http://greengenes.lbl.gov/ A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. ^\d+$ 100000 https://identifiers.org/greengenes:$1 False greengenes greengenes GREENGENES +grid Global Research Identifier Database International coverage of the world's leading research organisations, indexing 92% of funding allocated globally. ^grid\.[0-9]+\.[a-f0-9]{1,2}$ grid.225360.0 https://identifiers.org/grid:$1 False grid grid GRID +grin.taxonomy Germplasm Resources Information Network https://www.ars-grin.gov/ GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact. ^\d+$ 19333 https://identifiers.org/grin.taxonomy:$1 False grin.taxonomy grin.taxonomy GRIN.TAXONOMY +grsdb G-Rich Sequences Database GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank. ^\d+$ 10142 https://identifiers.org/grsdb:$1 False grsdb grsdb GRSDB +gsfa General Standard for Food Additives (GSFA) Online Database http://www.fao.org/gsfaonline 174 http://www.fao.org/gsfaonline/additives/details.html?id=$1 FAO/WHO_standards False +gsso Gender, Sex, and Sexual Orientation (GSSO) ontology https://gsso.research.cchmc.org/ The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology. ^GSSO:\d{6}$ 002368 kronkcj@mail.uc.edu https://identifiers.org/GSSO:$1 False GSSO gsso GSSO gsso +gtex Genotype-Tissue Expression The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation. ^\w.+$ BRIP1 https://identifiers.org/gtex:$1 False gtex gtex GTEX +gtr Genetic Testing Registry https://www.ncbi.nlm.nih.gov/gtr/ AN0097748 False +gudmap Genitourinary Development Molecular Anatomy Project The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract. ^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$ Q-2958 https://identifiers.org/gudmap:$1 False gudmap gudmap GUDMAP +gwascentral.marker GWAS Central Marker https://www.gwascentral.org/markers GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker. ^HGVM\d+$ HGVM15354 https://identifiers.org/gwascentral.marker:$1 False gwascentral.marker gwascentral.marker GWASCENTRAL.MARKER +gwascentral.phenotype GWAS Central Phenotype https://www.gwascentral.org/phenotypes GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype. ^HGVPM\d+$ HGVPM623 https://identifiers.org/gwascentral.phenotype:$1 False gwascentral.phenotype gwascentral.phenotype GWASCENTRAL.PHENOTYPE +gwascentral.study GWAS Central Study https://www.gwascentral.org/studies GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study. ^HGVST\d+$ HGVST1828 https://identifiers.org/gwascentral.study:$1 False gwascentral.study gwascentral.study GWASCENTRAL.STUDY +gxa.expt GXA Expt The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments. ^[AEP]-\w{4}-\d+$ E-MTAB-2037 https://identifiers.org/gxa.expt:$1 False gxa.expt gxa.expt GXA.EXPT +gxa.gene GXA Gene The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes. ^\w+$ AT4G01080 https://identifiers.org/gxa.gene:$1 False gxa.gene gxa.gene GXA.GENE +hamap High-quality Automated and Manual Annotation of microbial Proteomes http://hamap.expasy.org/ HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries. ^MF_\d+$ MF_01400 https://identifiers.org/hamap:$1 False hamap hamap HAMAP HAMAP +hancestro Human Ancestry Ontology https://github.com/EBISPOT/ancestro Human ancestry ontology for the NHGRI GWAS Catalog danielle.welter@uni.lu https://www.ebi.ac.uk/ols/ontologies/hancestro/terms?iri=http://purl.obolibrary.org/obo/HANCESTRO_$1 False HANCESTRO HANCESTRO hancestro +hao Hymenoptera Anatomy Ontology http://hymao.org A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants) ^\d{7}$ 0000187 diapriid@gmail.com https://www.ebi.ac.uk/ols/ontologies/hao/terms?iri=http://purl.obolibrary.org/obo/HAO_$1 False HAO HAO hao HAO +hcao Human Cell Atlas Ontology Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas. https://www.ebi.ac.uk/ols/ontologies/hcao/terms?iri=http://purl.obolibrary.org/obo/HCAO_$1 False hcao +hcpcs Healthcare Common Procedure Coding System False HCPCS +hcvdb Hepatitis C Virus Database http://euhcvdb.ibcp.fr the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses. ^M\d{5}$ M58335 https://identifiers.org/hcvdb:$1 False hcvdb hcvdb HCVDB +hdr Homeodomain Research The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders. ^\d+$ 63 https://identifiers.org/hdr:$1 False hdr hdr HDR +hgmd Human Gene Mutation Database The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases. ^[A-Z_0-9]+$ CALM1 https://identifiers.org/hgmd:$1 False hgmd hgmd HGMD +hgnc HUGO Gene Nomenclature Committee http://www.genenames.org The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database. ^((HGNC|hgnc):)?\d{1,5}$ 16793 https://identifiers.org/hgnc:$1 False HGNC hgnc hgnc HGNC HGNC P354 +hgnc.genefamily HGNC gene family http://www.genenames.org The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families. ^\d+$ 2029 https://identifiers.org/hgnc.genefamily:$1 GFAM|HGNC_GROUP|hgnc.family False hgnc.genefamily hgnc.genefamily HGNC.GENEFAMILY +hgnc.genegroup HGNC Gene Group The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families. ^\d+$ 141 https://identifiers.org/hgnc.genegroup:$1 False hgnc.genegroup +hgnc.symbol HGNC Symbol The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol. ^[A-Za-z-0-9_]+(\@)?$ DAPK1 https://identifiers.org/hgnc.symbol:$1 False hgnc.symbol hgnc.symbol HGNC.SYMBOL +hinv.locus H-InvDb Locus H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view. ^HIX\d{7}(\.\d+)?$ HIX0004394 https://identifiers.org/hinv.locus:$1 False hinv.locus hinv.locus HINV.LOCUS +hinv.protein H-InvDb Protein H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view. ^HIP\d{9}(\.\d+)?$ HIP000030660 https://identifiers.org/hinv.protein:$1 False hinv.protein hinv.protein HINV.PROTEIN +hinv.transcript H-InvDb Transcript H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view. ^HIT\d{9}(\.\d+)?$ HIT000195363 https://identifiers.org/hinv.transcript:$1 False hinv.transcript hinv.transcript HINV.TRANSCRIPT +hmdb Human Metabolome Database The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data. ^HMDB\d+$ HMDB00001 https://identifiers.org/hmdb:$1 HMDB False hmdb hmdb HMDB P2057 +hms.lincs.compound HMS LINCS Compound 10001-101 https://lincs.hms.harvard.edu/db/sm/$1 HMS-LINCS False +hog Homologous Organ Groups 0000255 ftp://ftp.bgee.org/general/ontologies/HOG.obo False +hogenom Database of Complete Genome Homologous Genes Families HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier. ^\w+$ HBG284870 https://identifiers.org/hogenom:$1 False hogenom hogenom HOGENOM HOGENOM +hom Homology Ontology https://github.com/BgeeDB/homology-ontology This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. bgee@sib.swiss https://www.ebi.ac.uk/ols/ontologies/hom/terms?iri=http://purl.obolibrary.org/obo/HOM_$1 False HOM HOM hom HOM +homd.seq HOMD Sequence Metainformation The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information. ^SEQF\d+$ SEQF1003 https://identifiers.org/homd.seq:$1 False homd.seq homd.seq HOMD.SEQ +homd.taxon HOMD Taxonomy The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information. ^\d+$ 811 https://identifiers.org/homd.taxon:$1 False homd.taxon homd.taxon HOMD.TAXON +homologene HomoloGene HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes. ^\d+$ 1000 https://identifiers.org/homologene:$1 False homologene homologene HOMOLOGENE P593 +hovergen Homologous Vertebrate Genes Database https://pbil.univ-lyon1.fr/databases/hovergen.php HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees. ^HBG\d+$ HBG004341 https://identifiers.org/hovergen:$1 False hovergen hovergen HOVERGEN +hp Human Phenotype Ontology http://www.human-phenotype-ontology.org/ The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM. ^HP:\d{7}$ 0011140 dr.sebastian.koehler@gmail.com https://identifiers.org/HP:$1 http://purl.obolibrary.org/obo/hp.obo False HP hp hp HP hp HP P3841 +hpa Human Protein Atlas tissue profile information http://www.proteinatlas.org/ The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers. ^ENSG\d{11}$ ENSG00000026508 https://identifiers.org/hpa:$1 False hpa hpa HPA HPA +hpath Histopathology Ontology https://github.com/Novartis/hpath An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species. https://www.ebi.ac.uk/ols/ontologies/hpath/terms?iri=http://purl.obolibrary.org/obo/HPATH_$1 False hpath +hpm.peptide Human Proteome Map Peptide The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra. ^\d+$ 9606117 https://identifiers.org/hpm.peptide:$1 False hpm.peptide hpm.peptide HPM.PEPTIDE +hpm.protein Human Proteome Map Protein The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins. ^\d+$ 1968 https://identifiers.org/hpm.protein:$1 False hpm.protein hpm.protein HPM.PROTEIN +hprd Human Protein Reference Database The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome. ^\d+$ 00001 https://identifiers.org/hprd:$1 False hprd hprd HPRD +hpscreg Human Pluripotent Stem Cell Registry hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines). ^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$ BCRTi001-A https://identifiers.org/hpscreg:$1 False hpscreg hpscreg +hsapdv Human Developmental Stages https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv Life cycle stages for Human ^\d{7}$ 0000194 bgee@sib.swiss https://www.ebi.ac.uk/ols/ontologies/hsapdv/terms?iri=http://purl.obolibrary.org/obo/HSAPDV_$1 HsapDv False HSAPDV HsapDv hsapdv HSAPDV +hsdb Hazardous Substances Data Bank 5621 False P2062 +hso Health Surveillance Ontology https://w3id.org/hso "The health Surveillance Ontology (HSO) focuses on ""surveillance system level data"", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance." fernanda.dorea@sva.se https://www.ebi.ac.uk/ols/ontologies/hso/terms?iri=http://purl.obolibrary.org/obo/HSO_$1 False HSO HSO hso +hssp Database of homology-derived secondary structure of proteins HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein. ^\w{4}$ 102l https://identifiers.org/hssp:$1 False hssp hssp HSSP +htn Hypertension Ontology https://github.com/aellenhicks/htn_owl An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines aellenhicks@gmail.com https://www.ebi.ac.uk/ols/ontologies/htn/terms?iri=http://purl.obolibrary.org/obo/HTN_$1 False HTN HTN htn +huge Human Unidentified Gene-Encoded The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project. ^KIAA\d{4}$ KIAA0001 https://identifiers.org/huge:$1 False huge huge HUGE HUGE +iao Information Artifact Ontology https://github.com/information-artifact-ontology/IAO/ An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch. ^\d{7}$ 0000030 jiezheng@pennmedicine.upenn.edu https://identifiers.org/iao:$1 False IAO iao iao IAO iao IAO +icd10 International Classification of Diseases The International Classification of Diseases is the international standard diagnostic classification for all general epidemiological and many health management purposes. ^[A-Z]\d+(\.[-\d+])?$ C34 https://identifiers.org/icd:$1 ICD|ICD10|ICD-10|ICD10CM False ICD10 icd ICD P4229 +icd11 International Classification of Diseases 11th Revision RA01.0 ICD-11 False P7807 +icd9 International Classification of Diseases 9th Revision 277.9 ICD9|IC9CM|ICD9CM_2005|ICDCM_2005|ICD9_2005|ICD9CM_2006|ICD9CM|ICD9CM_2005|MTHICD9_2006 False ICD9CM P493 +icdc Integrated Canine Data Commons The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer. ^ICDC[0-9][0-9][0-9][0-9][0-9][0-9]$ ICDC000101 https://identifiers.org/icdc:$1 False icdc +icdo The International Classification of Diseases for Oncology M9861/3 ICD-O|ICDO False ICDO P563 +iceberg.element ICEberg element ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements. ^\d+$ 100 https://identifiers.org/iceberg.element:$1 False iceberg.element iceberg.element ICEBERG.ELEMENT +iceberg.family ICEberg family ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families. ^\d+$ 1 https://identifiers.org/iceberg.family:$1 False iceberg.family iceberg.family ICEBERG.FAMILY +iceo Integrative and Conjugative Element Ontology https://github.com/ontoice/ICEO A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning. liumeng94@sjtu.edu.cn https://www.ebi.ac.uk/ols/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_$1 False ICEO ICEO iceo +ico Informed Consent Ontology https://github.com/ICO-ontology/ICO The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field. yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/ico/terms?iri=http://purl.obolibrary.org/obo/ICO_$1 False ICO ICO ico ICO +ideal Intrinsically Disordered proteins with Extensive Annotations and Literature https://www.ideal-db.org IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments. ^IID\d+$ IID00001 https://identifiers.org/ideal:$1 False ideal ideal IDEAL IDEAL +ido Infectious Disease Ontology http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases. ^[0-9]+$ 0000504 Lindsay.Cowell@utsouthwestern.edu https://identifiers.org/ido:$1 False IDO ido ido IDO ido IDO +idocovid19 The COVID-19 Infectious Disease Ontology https://github.com/infectious-disease-ontology-extensions/ido-covid-19 The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease. johnbeverley2021@u.northwestern.edu https://www.ebi.ac.uk/ols/ontologies/idocovid19/terms?iri=http://purl.obolibrary.org/obo/IDOCOVID19_$1 False IDO-COVID-19 idocovid19 +idoden Dengue Fever Ontology False IDODEN +idomal Malaria Ontology https://www.vectorbase.org/ontology-browser An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. ^\d{7}$ 0002350 topalis@imbb.forth.gr https://www.ebi.ac.uk/ols/ontologies/idomal/terms?iri=http://purl.obolibrary.org/obo/IDOMAL_$1 http://purl.obolibrary.org/obo/idomal.obo False IDOMAL IDOMAL idomal IDOMAL +idoo Identifiers.org Ontology Identifiers.org Ontology ^[0-9a-zA-Z]+$ DataCollection https://identifiers.org/idoo:$1 False idoo idoo +idot Identifiers.org Terms http://biomodels.net/vocab/idot.rdf Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets. ^[A-Za-z]+$ identifierPattern https://biomodels.net/vocab/idot.rdf#$1 False idot idot IDOT +idr Image Data Resource "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image"" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools." ^[0-9]{4}$ 0001 https://identifiers.org/idr:$1 False idr +igsn International Geo Sample Number IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents. ^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$ AU124 https://identifiers.org/igsn:$1 False igsn +imdrf International Medical Device Regulators Forum http://www.imdrf.org/ False +imex International Molecular Exchange The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources. ^IM-\d+(-?)(\d+?)$ IM-19210-3 https://identifiers.org/imex:$1 False imex imex IMEX +img.gene Integrated Microbial Genomes Gene The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information. ^\d+$ 638309541 https://identifiers.org/img.gene:$1 False img.gene img.gene IMG.GENE +img.taxon Integrated Microbial Genomes Taxon The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information. ^\d+$ 648028003 https://identifiers.org/img.taxon:$1 False img.taxon img.taxon IMG.TAXON +imgt.hla IMGT/HLA human major histocompatibility complex sequence database http://www.ebi.ac.uk/imgt/hla IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature. ^[A-Z0-9*:]+$ A*01:01:01:01 https://identifiers.org/imgt.hla:$1 False imgt.hla imgt.hla IMGT.HLA +imgt.ligm ImMunoGeneTics database covering immunoglobulins and T-cell receptors http://www.imgt.org/ IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates. ^M\d+$ M94112 https://identifiers.org/imgt.ligm:$1 False imgt.ligm imgt.ligm IMGT.LIGM +inchi InChI The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier. ^InChI\=1S?\/[A-Za-z0-9\.]+(\+[0-9]+)?(\/[cnpqbtmsih][A-Za-z0-9\-\+\(\)\,\/\?\;\.]+)*$ InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 https://identifiers.org/inchi:$1 False inchi inchi INCHI P234 +inchikey InChIKey The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI. ^[A-Z]{14}\-[A-Z]{10}(\-[A-Z])? RYYVLZVUVIJVGH-UHFFFAOYSA-N https://identifiers.org/inchikey:$1 False inchikey inchikey INCHIKEY P235 +inn International Nonproprietary Names fluticasone https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1 INN_ID False P2275 +ino Interaction Network Ontology https://github.com/INO-ontology/ino he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles. yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/ino/terms?iri=http://purl.obolibrary.org/obo/INO_$1 False INO INO ino +insdc Nucleotide Sequence Database The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. ^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$ X58356 https://identifiers.org/insdc:$1 False insdc insdc INSDC +insdc.cds INSDC CDS The coding sequence or protein identifiers as maintained in INSDC. ^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4}\d{8}|[A-J][A-Z]{2}\d{5})(\.\d+)?$ AAA35559 https://identifiers.org/insdc.cds:$1 False insdc.cds insdc.cds INSDC.CDS +insdc.gca Genome assembly database The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage. ^GC[AF]_[0-9]{9}\.[0-9]+$ GCA_000155495.1 https://identifiers.org/insdc.gca:$1 False insdc.gca insdc.gca INSDC.GCA +insdc.sra Sequence Read Archive The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database. ^[SED]R[APRSXZ]\d+$ SRX000007 https://identifiers.org/insdc.sra:$1 False insdc.sra insdc.sra INSDC.SRA +intact IntAct protein interaction database https://www.ebi.ac.uk/intact/ IntAct provides a freely available, open source database system and analysis tools for protein interaction data. ^EBI\-[0-9]+$ EBI-2307691 https://identifiers.org/intact:$1 False intact intact INTACT IntAct +intact.molecule IntAct Molecule IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules. ^EBI\-[0-9]+$ EBI-366083 https://identifiers.org/intact.molecule:$1 False intact.molecule intact.molecule INTACT.MOLECULE +interlex InterLex InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. ^[0-9]+$ 0101963 https://identifiers.org/ilx:$1 ILX False ilx +interpro InterPro database of protein domains and motifs http://www.ebi.ac.uk/interpro/ InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences. ^IPR\d{6}$ IPR016380 https://identifiers.org/interpro:$1 InterPro|IP False interpro interpro INTERPRO InterPro P2926 +ird.segment IRD Segment Sequence Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s). ^\w+(\_)?\d+(\.\d+)?$ CY077097 https://identifiers.org/ird.segment:$1 False ird.segment ird.segment IRD.SEGMENT +irefweb iRefWeb iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived. ^\d+$ 617102 https://identifiers.org/irefweb:$1 False irefweb irefweb IREFWEB +iro Insect Resistance Ontology 0000008 https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1 True +isbn International Standard Book Number https://www.worldcat.org The International Standard Book Number (ISBN) is for identifying printed books. ^(ISBN)?(-13|-10)?[:]?[ ]?(\d{2,3}[ -]?)?\d{1,5}[ -]?\d{1,7}[ -]?\d{1,6}[ -]?(\d|X)$ 9781584885658 https://identifiers.org/isbn:$1 ISBN-10|ISBN-13 False isbn isbn ISBN-13 +isfinder Insertion sequence elements database http://www-is.biotoul.fr/ ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available. ^IS\w+(\-\d)?$ ISA1083-2 https://identifiers.org/isfinder:$1 False isfinder isfinder ISFINDER +isni International Standard Name Identifier "ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC. + +The mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described." ^[0-9]{15}[0-9X]{1}$ 000000012281955X https://identifiers.org/isni:$1 False isni isni +issn International Standard Serial Number http://www.issn.org/ The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books. ^\d{4}-\d{3}[\dX]$ 0745-4570 https://identifiers.org/issn:$1 False issn issn ISSN +itis Integrated Taxonomic Information System ^\d+$ 589462 https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1 False P815 +ito Intelligence Task Ontology The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks. ^.+$ ITO_01625 https://identifiers.org/ito:$1 False ITO ito +iuphar.family IUPHAR family The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits. ^\d+$ 78 https://identifiers.org/iuphar.family:$1 IUPHARfam False iuphar.family iuphar.family IUPHAR.FAMILY +iuphar.ligand IUPHAR ligand The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands. ^\d+$ 1755 https://identifiers.org/iuphar.ligand:$1 IUPHAR_LIGAND|IUPHAR_LIGAND_ID False iuphar.ligand iuphar.ligand IUPHAR.LIGAND P595 +iuphar.receptor International Union of Pharmacology http://www.iuphar.org/ The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits. ^\d+$ 101 https://identifiers.org/iuphar.receptor:$1 IUPHARobj|IUPHAR_GPCR False iuphar.receptor iuphar.receptor IUPHAR.RECEPTOR P5458 +jax Jackson Laboratories Strain 004435 https://www.jax.org/strain/$1 False JAX +jaxmice JAX Mice JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory. ^\d+$ 005012 https://identifiers.org/jaxmice:$1 False jaxmice jaxmice JAXMICE +jcggdb Japan Consortium for Glycobiology and Glycotechnology Database JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc. ^JCGG-STR\d{6}$ JCGG-STR008690 https://identifiers.org/jcggdb:$1 False jcggdb jcggdb JCGGDB +jcm Japan Collection of Microorganisms http://www.jcm.riken.go.jp/ The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2. ^\d+$ 17254 https://identifiers.org/jcm:$1 False jcm jcm JCM +jcsd Japan Chemical Substance Dictionary The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST). ^J\d{1,3}(\.\d{3})?(\.\d{1,3})?[A-Za-z]$ J55.713G https://identifiers.org/jcsd:$1 False jcsd jcsd JCSD +jstor Digital archive of scholarly articles https://www.jstor.org/ JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration. ^\d+$ 3075966 https://identifiers.org/jstor:$1 False jstor jstor JSTOR +jws JWS Online JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser. ^\w+$ curien https://identifiers.org/jws:$1 False jws jws JWS +kaggle Kaggle Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions. ^[0-9a-zA-Z\-]+\/[0-9a-zA-Z\-]+$ nasa/kepler-exoplanet-search-results https://identifiers.org/kaggle:$1 False kaggle kaggle +kegg Kyoto Encyclopedia of Genes and Genomes http://www.genome.ad.jp/kegg/ Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. ^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$ hsa00190 https://identifiers.org/kegg:$1 KEGG True kegg kegg KEGG KEGG +kegg.compound KEGG Compound KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life. ^C\d+$ C12345 https://identifiers.org/kegg.compound:$1 KEGG.COMPOUND|KEGG COMPOUND False kegg.compound kegg.compound KEGG.COMPOUND P665 kegg +kegg.disease KEGG Disease The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system. ^H\d+$ H00076 https://identifiers.org/kegg.disease:$1 False kegg.disease kegg.disease KEGG.DISEASE kegg +kegg.drug KEGG Drug KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules. ^D\d+$ D00123 https://identifiers.org/kegg.drug:$1 KEGG.DRUG|KEGG DRUG False kegg.drug kegg.drug KEGG.DRUG P665 kegg +kegg.environ KEGG Environ KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable. ^(ev\:)?E\d+$ ev:E00032 https://identifiers.org/kegg.environ:$1 False kegg.environ kegg.environ KEGG.ENVIRON kegg +kegg.enzyme KEGG Enzyme http://www.genome.jp/dbget-bin/www_bfind?enzyme False kegg +kegg.genes KEGG Genes KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources. ^\w+:[\w\d\.-]*$ bsu:BSU01340 https://identifiers.org/kegg.genes:$1 False kegg.genes kegg.genes KEGG.GENES P665 kegg +kegg.genome KEGG Genome KEGG Genome is a collection of organisms whose genomes have been completely sequenced. ^(T0\d+|\w{3,5})$ T06648 https://identifiers.org/kegg.genome:$1 kegg_genome|kegg_genomes False kegg.genome kegg.genome KEGG.GENOME P665 kegg +kegg.glycan KEGG Glycan KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways. ^G\d+$ G00123 https://identifiers.org/kegg.glycan:$1 False kegg.glycan kegg.glycan KEGG.GLYCAN kegg +kegg.ligand KEGG LIGAND http://www.genome.ad.jp/kegg/docs/upd_ligand.html False kegg +kegg.metagenome KEGG Metagenome The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species. ^T3\d+$ T30002 https://identifiers.org/kegg.metagenome:$1 False kegg.metagenome kegg.metagenome KEGG.METAGENOME kegg +kegg.module KEGG Module KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules. ^([a-z]{3,5}_)?M\d{5}$ M00002 https://identifiers.org/kegg.module:$1 False kegg.module kegg.module KEGG.MODULE kegg +kegg.orthology KEGG Orthology KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms. ^K\d+$ K00001 https://identifiers.org/kegg.orthology:$1 False kegg.orthology kegg.orthology KEGG.ORTHOLOGY kegg +kegg.pathway KEGG Pathways Database http://www.genome.jp/kegg/pathway.html KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks. ^\w{2,4}\d{5}$ rsk00410 https://identifiers.org/kegg.pathway:$1 KEGG_PATHWAY|KEGG-path False kegg.pathway kegg.pathway KEGG-path P665 kegg +kegg.reaction KEGG Reaction Database http://www.genome.jp/kegg/reaction/ KEGG reaction contains our knowledge on the universe of reactions that are relevant to life. ^R\d+$ R00100 https://identifiers.org/kegg.reaction:$1 KEGG_REACTION False kegg.reaction kegg.reaction KEGG.REACTION P665 kegg +knapsack KNApSAcK "KNApSAcK provides information on metabolites and the +taxonomic class with which they are associated." ^C\d{8} C00000001 https://identifiers.org/knapsack:$1 False knapsack knapsack KNAPSACK P2064 +kupo Kidney and Urinary Pathway Ontology False +labo clinical LABoratory Ontology https://github.com/OpenLHS/LABO LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents. paul.fabry@usherbrooke.ca https://www.ebi.ac.uk/ols/ontologies/labo/terms?iri=http://purl.obolibrary.org/obo/LABO_$1 False LABO LABO labo +lbo Livestock Breed Ontology http://bioportal.bioontology.org/ontologies/LBO A vocabulary for cattle, chicken, horse, pig, and sheep breeds. jreecy@iastate.edu https://www.ebi.ac.uk/ols/ontologies/lbo/terms?iri=http://purl.obolibrary.org/obo/LBO_$1 False LBO lbo +lei Global LEI Index Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland. ^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$ HWUPKR0MPOU8FGXBT394 https://identifiers.org/lei:$1 False lei lei +lgic Ligand-Gated Ion Channel database The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available. ^\w+$ 5HT3Arano https://identifiers.org/lgic:$1 False lgic lgic LGIC +licebase LiceBase Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects. ^[A-Za-z0-9\-\/]+$ EMLSAT00000003403 https://identifiers.org/licebase:$1 False licebase licebase LICEBASE +ligandbook LigandBook Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community. ^[0-9]+$ 785 https://identifiers.org/ligandbook:$1 False ligandbook ligandbook +ligandbox LigandBox LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds. ^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$ D00001 https://identifiers.org/ligandbox:$1 False ligandbox ligandbox LIGANDBOX +ligandexpo Ligand Expo Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids. ^(\w){3}$ ABC https://identifiers.org/ligandexpo:$1 False ligandexpo ligandexpo LIGANDEXPO +lincs.cell LINCS Cell The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease. (^LCL-\d+$)|(^LDC-\d+$)|(^ES-\d+$)|(^LSC-\d+$)|(^LPC-\d+$) LCL-2085 https://identifiers.org/lincs.cell:$1 False lincs.cell lincs.cell LINCS.CELL +lincs.data LINCS Data The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level). ^[EL]D[SG]-\d+$ LDS-1110 https://identifiers.org/lincs.data:$1 False lincs.data lincs.data LINCS.DATA +lincs.protein LINCS Protein The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins. ^\d+$ 200282 https://identifiers.org/lincs.protein:$1 False lincs.protein lincs.protein LINCS.PROTEIN +lincs.smallmolecule LINCS Small Molecule The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC). ^LSM-\d+$ LSM-6306 https://identifiers.org/lincs.smallmolecule:$1 lincs False lincs.smallmolecule lincs.smallmolecule LINCS.SMALLMOLECULE +lipidbank LipidBank LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins. ^\w+\d+$ BBA0001 https://identifiers.org/lipidbank:$1 False lipidbank lipidbank LIPIDBANK +lipidmaps LIPID MAPS The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy. ^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$ LMPR0102010012 https://identifiers.org/lipidmaps:$1 LIPID_MAPS_instance|LIPID MAPS|LIPID_MAPS_class False lipidmaps lipidmaps LIPIDMAPS P2063 +lncipedia LNCipedia A comprehensive compendium of human long non-coding RNAs SNHG3 False +loinc Logical Observation Identifiers Names and Codes https://loinc.org/ LL379-9 https://loinc.org/$1/ False LOINC +lrg Locus Reference Genomic A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI. ^LRG_\d+$ LRG_1 https://identifiers.org/lrg:$1 False lrg lrg LRG +lspci Laboratory of Systems Pharmacology Compound ID https://labsyspharm.shinyapps.io/smallmoleculesuite/ False +ma Mouse adult gross anatomy https://github.com/obophenotype/mouse-anatomy-ontology A structured controlled vocabulary of the adult anatomy of the mouse (Mus) ^MA:\d+$ 0002502 https://identifiers.org/MA:$1 False MA ma ma MA ma MA +macie Mechanism, Annotation and Classification in Enzymes MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved. ^M\d{4}$ M0001 https://identifiers.org/macie:$1 False macie macie MACIE +maizegdb.locus MaizeGDB Locus https://www.maizegdb.org/ MaizeGDB is the maize research community's central repository for genetics and genomics information. ^\d+$ 25011 https://identifiers.org/maizegdb.locus:$1 False maizegdb.locus maizegdb.locus MAIZEGDB.LOCUS +mamo Mathematical modeling ontology http://sourceforge.net/p/mamo-ontology/wiki/Home/ The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features. ^MAMO_\d{7}$ MAMO_0000026 n.lenovere@gmail.com https://identifiers.org/mamo:$1 False MAMO mamo mamo MAMO mamo MAMO +massbank MassBank MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da). ^[A-Z]{2}[A-Z0-9][0-9]{5}$ PB000166 https://identifiers.org/massbank:$1 False massbank massbank MASSBANK P6689 +massive MassIVE MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. ^MSV\d+$ MSV000082131 https://identifiers.org/massive:$1 False massive massive MASSIVE MassIVE +mat Minimal Anatomical Terminology j.bard@ed.ac.uk True MAT MAT MAT +matrixdb MatrixDB http://matrixdb.univ-lyon1.fr/ MULT_4_VAR1_bovine http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1 False +matrixdb.association MatrixDB Association MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations. ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$ P00747__P07355 https://identifiers.org/matrixdb.association:$1 False matrixdb.association matrixdb.association MATRIXDB.ASSOCIATION +maxo Medical Action Ontology https://github.com/monarch-initiative/MAxO An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations. Leigh.Carmody@jax.org https://www.ebi.ac.uk/ols/ontologies/maxo/terms?iri=http://purl.obolibrary.org/obo/MAXO_$1 False MAXO MAXO maxo +mcc Cell Line Ontology [derivative] True MCCL +mco Microbial Conditions Ontology https://github.com/microbial-conditions-ontology/microbial-conditions-ontology Microbial Conditions Ontology is an ontology... ^\d+$ 0000858 citlalli.mejiaalmonte@gmail.com https://www.ebi.ac.uk/ols/ontologies/mco/terms?iri=http://purl.obolibrary.org/obo/MCO_$1 False MCO MCO mco +mdm Medical Data Models The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems. ^\d+$ 4776 https://identifiers.org/mdm:$1 False mdm mdm MDM +meddra Medical Dictionary for Regulatory Activities Terminology The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT). ^\d+$ 10015919 https://identifiers.org/meddra:$1 MedDRA|MeDRA|MEDRA|Medical Dictionary for Regulatory Activities False MEDDRA meddra meddra MEDDRA P3201 +medgen Human Medical Genetics https://www.ncbi.nlm.nih.gov/medgen MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder. ^[CN]*\d{4,7}$ 760050 https://identifiers.org/medgen:$1 False medgen medgen MedGen +medlineplus MedlinePlus Health Topics MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language. ^\d+$ 002804 https://identifiers.org/medlineplus:$1 False MEDLINEPLUS medlineplus medlineplus MEDLINEPLUS +merops MEROPS peptidase database https://www.ebi.ac.uk/merops/ The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. ^[SCTAGMNU]\d{2}\.([AB]\d{2}|\d{3})$ S01.001 https://identifiers.org/merops:$1 False merops merops MEROPS MEROPS +merops.family MEROPS Family The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families. ^[SCTAGMNU]\d+$ S1 https://identifiers.org/merops.family:$1 False merops.family merops.family MEROPS.FAMILY +merops.inhibitor MEROPS Inhibitor The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors. ^I\d{2}\.\d{3}$ I31.952 https://identifiers.org/merops.inhibitor:$1 False merops.inhibitor merops.inhibitor MEROPS.INHIBITOR +mesh Medical Subject Headings https://www.wikidata.org/wiki/Q6589563 MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc. ^(C|D)\d{6,9}$ C063233 https://identifiers.org/mesh:$1 MSH|MESH|MESHD|MESHA|MESHC|MESHPP|MESHCS|MESH_SUPPLEMENTAL_RECORD_UI|MESH_DESCRIPTOR_UI False MESH mesh mesh MESH P486 +mesh.2012 MeSH 2012 MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012. ^[A-Za-z0-9]+$ 17186 https://identifiers.org/mesh.2012:$1 False mesh.2012 mesh.2012 MESH.2012 +mesh.2013 MeSH 2013 MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013. ^[A-Za-z0-9]+$ 17165 https://identifiers.org/mesh.2013:$1 False mesh.2013 mesh.2013 MESH.2013 +metabolights MetaboLights MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies. ^MTBLS\d+$ MTBLS1 https://identifiers.org/metabolights:$1 False metabolights metabolights METABOLIGHTS P3890 +metacyc.compound Metabolic Encyclopedia of metabolic and other pathways http://metacyc.org/ MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway. ^[A-Za-z0-9+_.%-:]+$ CPD-10330 https://identifiers.org/metacyc.compound:$1 MetaCyc False metacyc.compound metacyc.compound METACYC.COMPOUND +metacyc.reaction MetaCyc Reaction MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway. ^[A-Za-z0-9+_.%-:]+$ RXN-14904 https://identifiers.org/metacyc.reaction:$1 False metacyc.reaction metacyc.reaction METACYC.REACTION +metanetx.chemical MetaNetX chemical MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components. ^(MNXM\d+|BIOMASS|WATER)$ MNXM1723 https://identifiers.org/metanetx.chemical:$1 False metanetx.chemical metanetx.chemical METANETX.CHEMICAL +metanetx.compartment MetaNetX compartment MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments. ^(MNX[CD]\d+|BOUNDARY|IN|OUT)$ MNXC15 https://identifiers.org/metanetx.compartment:$1 False metanetx.compartment metanetx.compartment METANETX.COMPARTMENT +metanetx.reaction MetaNetX reaction MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions. ^(MNXR\d+|EMPTY)$ MNXR101574 https://identifiers.org/metanetx.reaction:$1 False metanetx.reaction metanetx.reaction METANETX.REACTION +metlin Metabolite and Tandem Mass Spectrometry Database The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry. ^\d{4}$ 1455 https://identifiers.org/metlin:$1 False metlin metlin METLIN +mex Metabolome Express A public place to process, interpret and share GC/MS metabolomics datasets. ^\d+$ 36 https://identifiers.org/mex:$1 False mex mex MEX +mf Mental Functioning Ontology https://github.com/jannahastings/mental-functioning-ontology The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning. janna.hastings@gmail.com https://www.ebi.ac.uk/ols/ontologies/mf/terms?iri=http://purl.obolibrary.org/obo/MF_$1 False MF MF mf MF +mfmo Mammalian Feeding Muscle Ontology https://github.com/rdruzinsky/feedontology The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors. druzinsk@uic.edu https://www.ebi.ac.uk/ols/ontologies/mfmo/terms?iri=http://purl.obolibrary.org/obo/MFMO_$1 False MFMO MFMO mfmo MFMO +mfo Medaka fish anatomy and development Thorsten.Henrich@embl-heidelberg.de True MFO MFO MFO +mfoem Emotion Ontology https://github.com/jannahastings/emotion-ontology An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings. janna.hastings@gmail.com https://www.ebi.ac.uk/ols/ontologies/mfoem/terms?iri=http://purl.obolibrary.org/obo/MFOEM_$1 False MFOEM MFOEM mfoem MFOEM +mfomd Mental Disease Ontology https://github.com/jannahastings/mental-functioning-ontology The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF). janna.hastings@gmail.com https://www.ebi.ac.uk/ols/ontologies/mfomd/terms?iri=http://purl.obolibrary.org/obo/MFOMD_$1 False MFOMD MFOMD mfomd MFOMD +mge Aclame ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons. ^mge:\d+$ 2 https://identifiers.org/MGE:$1 False mge mge +mgi Mouse Genome Informatics http://www.informatics.jax.org/ The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data. ^MGI:\d+$ 6017782 https://identifiers.org/MGI:$1 MGI|MGD False mgi mgi MGI MGI P671 +mgnify.proj MGnify Project MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis. ^[A-Z]+[0-9]+$ ERP004492 https://identifiers.org/mgnify.proj:$1 False mgnify.proj mgnify.proj +mgnify.samp MGnify Sample The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples. ^[A-Z]+[0-9]+$ SRS086444 https://identifiers.org/mgnify.samp:$1 False mgnify.samp mgnify.samp +mi Molecular Interactions Controlled Vocabulary https://github.com/HUPO-PSI/psi-mi-CV The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative. ^MI:\d{4}$ 0058 pporras@ebi.ac.uk https://identifiers.org/MI:$1 PSI-MI False MI mi psimi MI mi MI +miaa Minimal Information About Anatomy ontology False +miapa MIAPA Ontology http://www.evoio.org/wiki/MIAPA "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies. + +This ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA." hilmar.lapp@duke.edu https://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_$1 False MIAPA MIAPA miapa MIAPA +micro Ontology of Prokaryotic Phenotypic and Metabolic Characters https://github.com/carrineblank/MicrO An ontology of prokaryotic phenotypic and metabolic characters carrine.blank@umontana.edu https://www.ebi.ac.uk/ols/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_$1 False MICRO micro MICRO +microscope MicroScope MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis. ^\d+$ 5601141 https://identifiers.org/microscope:$1 False microscope microscope MICROSCOPE +microsporidia MicrosporidiaDB MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^\w+$ ECU03_0820i https://identifiers.org/microsporidia:$1 False microsporidia microsporidia MICROSPORIDIA +mim Mendelian Inheritance in Man https://omim.org/ Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders. ^[*#+%^]?\d{6}$ 603903 https://identifiers.org/mim:$1 OMIM|OMIMPS|PS False MIM mim mim OMIM MIM P492 +mimodb MimoDB MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank. ^\d+$ 1 https://identifiers.org/mimodb:$1 False mimodb mimodb MIMODB +minid Minimal Viable Identifier Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. ^[A-Za-z0-9]+$ b97957 https://identifiers.org/minid:$1 False minid minid MINID +minid.test MINID Test Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. [A-Za-z0-9]+$ 3SBPLMKKVEVR https://identifiers.org/minid.test:$1 False minid.test +mint Molecular Interaction Database The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals. ^MINT\-\d{1,7}$ MINT-10000 https://identifiers.org/mint:$1 False mint mint MINT MINT +mipmod MIPModDB MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures. ^\w+$ HOSAPI0399 https://identifiers.org/mipmod:$1 False mipmod mipmod MIPMOD +mir Identifiers.org Registry "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or ""PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources." ^MIR:\d{8}$ 00100037 https://identifiers.org/MIR:$1 False mir mir MIR +mirbase miRNA Database http://www.mirbase.org/ The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). MI\d{7} MI0026471 http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1 False mirbase mirbase MIRBASE P2870 +mirbase.family miRBase Families http://www.mirbase.org/ MIPF0000002 http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1 MIRBASE_FAMILY False +mirbase.mature miRBase mature sequence http://www.mirbase.org/ The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence. MIMAT\d{7} MIMAT0046872 http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1 MIRBASEM False mirbase.mature mirbase.mature MIRBASE.MATURE P2871 +mirex mirEX mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages. ^\d+(\w+)?$ 165a https://identifiers.org/mirex:$1 False mirex mirex MIREX +miriam.collection MIRIAM Registry collection MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections. ^MIR:000\d{5}$ MIR:00000008 https://identifiers.org/miriam.collection:$1 True miriam.collection miriam.collection MIRIAM.COLLECTION +miriam.resource MIRIAM Registry resource MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases. ^MIR:001\d{5}$ MIR:00100005 https://identifiers.org/miriam.resource:$1 False miriam.resource miriam.resource MIRIAM.RESOURCE +mirnest miRNEST miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species. ^MNEST\d+$ MNEST029358 https://identifiers.org/mirnest:$1 False mirnest mirnest MIRNEST +miro Mosquito insecticide resistance http://anobase.vectorbase.org Application ontology for entities related to insecticide resistance in mosquitos ^\d{8}$ 40000617 louis@imbb.forth.gr https://www.ebi.ac.uk/ols/ontologies/miro/terms?iri=http://purl.obolibrary.org/obo/MIRO_$1 http://purl.obolibrary.org/obo/miro.obo False MIRO MIRO miro MIRO +mirtarbase miRTarBase miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments. ^MIRT\d{6}$ MIRT000002 https://identifiers.org/mirtarbase:$1 False mirtarbase mirtarbase MIRTARBASE +mirte miRNA Target Prediction at EMBL http://www.russelllab.org/miRNAs/ miR-1 False +mmdb Molecular Modeling Database The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites. ^\d{1,5}$ 50885 https://identifiers.org/mmdb:$1 False mmdb mmdb MMDB +mmmp.biomaps Melanoma Molecular Map Project Biomaps A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma. ^\d+$ 37 https://identifiers.org/mmmp:biomaps:$1 False mmmp:biomaps biomaps MMMP:BIOMAPS +mmo Measurement method ontology https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000 A representation of the variety of methods used to make clinical and phenotype measurements. ^\d{7}$ 0000574 jrsmith@mcw.edu https://www.ebi.ac.uk/ols/ontologies/mmo/terms?iri=http://purl.obolibrary.org/obo/MMO_$1 False MMO MMO mmo MMO +mmp.cat MarCat MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples. ^MMP\d+.\d+$ MMP743597.11 https://identifiers.org/mmp.cat:$1 False mmp.cat mmp.cat MMP.CAT +mmp.db MarDB MarDB includes all sequenced marine microbial genomes regardless of level of completeness. ^MMP\d+.\d+$ MMP02954345.1 https://identifiers.org/mmp.db:$1 False mmp.db mmp.db MMP.DB +mmp.fun MarFun MarFun is manually curated database for marine fungi which is a part of the MAR databases. ^MMP\d+.\d+$ MMP3888430 https://identifiers.org/mmp.fun:$1 False mmp.fun +mmp.ref MarRef MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes. ^MMP\d+.\d+$ MMP3312982.2 https://identifiers.org/mmp.ref:$1 False mmp.ref mmp.ref MMP.REF +mmrrc Mutant Mouse Resource and Research Centers https://www.mmrrc.org The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections. ^\d+$ 70 https://identifiers.org/mmrrc:$1 False mmrrc mmrrc MMRRC +mmsl Multum MediSource Lexicon 3355 MMSL_CODE False +mmusdv Mouse Developmental Stages https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv Life cycle stages for Mus Musculus ^\d{7}$ 0000066 bgee@sib.swiss https://www.ebi.ac.uk/ols/ontologies/mmusdv/terms?iri=http://purl.obolibrary.org/obo/MMUSDV_$1 MmusDv False MMUSDV MmusDv mmusdv MMUSDV +mo Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDontology.php The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data. ^\w+$ ArrayGroup stoeckrt@pcbi.upenn.edu https://identifiers.org/mo:$1 True MO mo mo MO MO +mobidb MobiDB http://mobidb.bio.unipd.it MobiDB is a database of protein disorder and mobility annotations. ^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$ P10636 https://identifiers.org/mobidb:$1 False mobidb mobidb MOBIDB MobiDB +mod Protein modification http://www.psidev.info/MOD The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications. ^MOD:\d{5} 01467 pierre-alain.binz@chuv.ch https://identifiers.org/MOD:$1 False PSIMOD mod mod MOD mod MOD +modeldb ModelDB ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment. ^\d+$ 45539 https://identifiers.org/modeldb:$1 False modeldb modeldb MODELDB +molbase Molbase Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier. ^(\d{1,7}\-\d{2}\-\d)|([A-Za-z0-9\+\-\_]+)$ 128796-39-4 https://identifiers.org/molbase:$1 False molbase molbase MOLBASE +molmedb MolMeDB MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. ^[m,M]{2}[0-9]{5}[0-9]*$ MM00040 https://identifiers.org/molmedb:$1 False molmedb +mondo Monarch Disease Ontology https://monarch-initiative.github.io/mondo A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology. ^\d{7}$ 0000001 vasilevs@ohsu.edu https://www.ebi.ac.uk/ols/ontologies/mondo/terms?iri=http://purl.obolibrary.org/obo/MONDO_$1 http://purl.obolibrary.org/obo/mondo.obo False MONDO MONDO mondo MONDO P5270 +mop Molecular Process Ontology https://github.com/rsc-ontologies/rxno MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation. ^\d{7}$ 0000079 batchelorc@rsc.org https://www.ebi.ac.uk/ols/ontologies/mop/terms?iri=http://purl.obolibrary.org/obo/MOP_$1 https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo False MOP MOP mop MOP +morpheus Morpheus model repository "The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software. +" ^M[0-9]{4,}$ M0001 https://identifiers.org/morpheus:$1 False morpheus +mp Mammalian Phenotype Ontology http://www.informatics.jax.org/searches/MP_form.shtml The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways. ^MP:\d{7}$ 0005452 pheno@jax.org https://identifiers.org/MP:$1 False MP mp mp MP mp MP +mpath Mouse pathology ontology http://www.pathbase.net A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes ^\d+$ 728 pns12@hermes.cam.ac.uk https://www.ebi.ac.uk/ols/ontologies/mpath/terms?iri=http://purl.obolibrary.org/obo/MPATH_$1 https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo MPATH False MPATH MPATH mpath MPATH +mpid Microbial Protein Interaction Database The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts. ^\d+$ 172 https://identifiers.org/mpid:$1 False mpid mpid MPID +mpio Minimum PDDI Information Ontology https://github.com/MPIO-Developers/MPIO An ontology of minimum information regarding potential drug-drug interaction information. mbrochhausen@uams.edu https://www.ebi.ac.uk/ols/ontologies/mpio/terms?iri=http://purl.obolibrary.org/obo/MPIO_$1 False MPIO MPIO mpio MPIO +mro MHC Restriction Ontology https://github.com/IEDB/MRO The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions. 0000634 bpeters@lji.org https://www.ebi.ac.uk/ols/ontologies/mro/terms?iri=http://purl.obolibrary.org/obo/MRO_$1 False MRO MRO mro MRO +ms Mass spectrometry ontology http://www.psidev.info/groups/controlled-vocabularies The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance. ^MS:\d{7}$ 1000560 gerhard.mayer@rub.de https://identifiers.org/MS:$1 False MS ms ms MS ms MS +msigdb Molecular Signatures Database https://www.gsea-msigdb.org NADELLA_PRKAR1A_TARGETS_DN msig False +msio Metabolomics Standards Initiative Ontology https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies. https://www.ebi.ac.uk/ols/ontologies/msio/terms?iri=http://purl.obolibrary.org/obo/MSIO_$1 False msio +multicellds.cell_line MultiCellDS Digital Cell Line MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata. ^MCDS_L_[a-zA-Z0-9]{1,10}$ MCDS_L_0000000001 https://identifiers.org/multicellds.cell_line:$1 False multicellds.cell_line multicellds.cell_line MULTICELLDS.CELL_LINE +multicellds.collection MultiCellDS collection MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections). ^MCDS_C_[a-zA-Z0-9]{1,10}$ MCDS_C_0000000001 https://identifiers.org/multicellds.collection:$1 False multicellds.collection multicellds.collection MULTICELLDS.COLLECTION +multicellds.snapshot MultiCellDS Digital snapshot MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data. ^MCDS_S_[a-zA-Z0-9]{1,10}$ MCDS_S_0000000001 https://identifiers.org/multicellds.snapshot:$1 False multicellds.snapshot multicellds.snapshot MULTICELLDS.SNAPSHOT +mw.project Metabolomics Workbench Project Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC). ^PR[0-9]{6}$ PR000001 https://identifiers.org/mw.project:$1 False mw.project mw.project MW.PROJECT +mw.study Metabolomics Workbench Study Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC). ^ST[0-9]{6}$ ST000900 https://identifiers.org/mw.study:$1 False mw.study mw.study MW.STUDY +myco.lepra MycoBrowser leprae Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information. ^ML\w+$ ML0224 https://identifiers.org/myco.lepra:$1 False myco.lepra myco.lepra MYCO.LEPRA +myco.marinum MycoBrowser marinum Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information. ^MMAR\_\d+$ MMAR_2462 https://identifiers.org/myco.marinum:$1 False myco.marinum myco.marinum MYCO.MARINUM +myco.smeg MycoBrowser smegmatis Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information. ^MSMEG\w+$ MSMEG_3769 https://identifiers.org/myco.smeg:$1 False myco.smeg myco.smeg MYCO.SMEG +myco.tuber MycoBrowser tuberculosis Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information. ^Rv\d{4}(A|B|c)?$ Rv1908c https://identifiers.org/myco.tuber:$1 False myco.tuber myco.tuber MYCO.TUBER +mycobank Fungal Nomenclature and Species Bank http://www.mycobank.org MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations. ^\d+$ 349124 https://identifiers.org/mycobank:$1 False mycobank mycobank MYCOBANK +mzspec Universal Spectrum Identifier The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it. ^mzspec:.+$ PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2 https://identifiers.org/MZSPEC:$1 False mzspec mzspec MZSPEC +namerxn NameRXN False +napdi Natural Product-Drug Interaction Research Data Repository The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs). ^[0-9]+$ 28 https://identifiers.org/napdi:$1 False napdi napdi NAPDI +napp Nucleic Acids Phylogenetic Profiling NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters. ^\d+$ 351 https://identifiers.org/napp:$1 False napp napp NAPP +narcis National Academic Research and Collaborations Information System http://www.narcis.nl NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases. ^oai\:cwi\.nl\:\d+$ oai:cwi.nl:4725 https://identifiers.org/narcis:$1 False narcis narcis NARCIS +nasc NASC code The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community. ^(\w+)?\d+$ N1899 https://identifiers.org/nasc:$1 False nasc nasc NASC +nbn National Bibliography Number The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier. ^urn\:nbn\:[A-Za-z_0-9]+\:([A-Za-z_0-9]+)-[A-Za-z_0-9]+$ urn:nbn:fi:tkk-004781 https://identifiers.org/nbn:$1 False nbn nbn NBN +nbo Neuro Behavior Ontology https://github.com/obo-behavior/behavior-ontology/ An ontology of human and animal behaviours and behavioural phenotypes ^\d{7}$ 0000564 g.gkoutos@bham.ac.uk https://www.ebi.ac.uk/ols/ontologies/nbo/terms?iri=http://purl.obolibrary.org/obo/NBO_$1 https://github.com/obo-behavior/behavior-ontology/raw/master/nbo.obo False NBO NBO nbo NBO +nbrc NITE Biological Resource Center http://www.nbrc.nite.go.jp/e/catalog-e.html NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information. ^\d+$ 00001234 https://identifiers.org/nbrc:$1 False nbrc nbrc NBRC +ncats.drug NCATS Drugs https://drugs.ncats.io/ 44259 https://drugs.ncats.io/drug/$1 False +ncbigene NCBI Gene http://www.ncbi.nlm.nih.gov/ Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis. ^\d+$ 100010 https://identifiers.org/ncbigene:$1 entrez|NCBIGene|EGID|entrez gene/locuslink False ncbigene ncbigene NCBIGene P351 +ncbiprotein NCBI Protein https://www.ncbi.nlm.nih.gov/protein The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. ^(\w+\d+(\.\d+)?)|(NP_\d+)$ CAA71118.1 https://identifiers.org/ncbiprotein:$1 False ncbiprotein ncbiprotein NCBIProtein +ncbitaxon NCBI organismal classification https://github.com/obophenotype/ncbitaxon The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined. ^\d+$ 2170610 frederic.bastian@unil.ch https://identifiers.org/taxonomy:$1 http://purl.obolibrary.org/obo/ncbitaxon.obo NCBITaxon|taxid|NCBI_Taxon_ID|NCBI_taxid|taxonomy|TAX|TaxonomyID|taxon False NCBITAXON taxonomy taxonomy NCBITaxon ncbitaxon NCBITaxon P685 +ncim NCI Metathesaurus NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical. ^C\d+$ C0026339 https://identifiers.org/ncim:$1 False ncim ncim NCIM +ncit NCI Thesaurus https://github.com/NCI-Thesaurus/thesaurus-obo-edition NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code. ^C\d+$ C138986 haendel@ohsu.edu https://identifiers.org/ncit:$1 http://purl.obolibrary.org/obo/ncit.obo NCIt|NCIT|NCI|NCI2004_11_17|ncithesaurus|NCI_Thesaurus|NCIT_Thesaurus|NCITm|NCITt False NCIT ncit ncit NCIT ncit NCIT P1748 +ncro Non-Coding RNA Ontology http://omnisearch.soc.southalabama.edu/w/index.php/Ontology An ontology for non-coding RNA, both of biological origin, and engineered. huang@southalabama.edu https://www.ebi.ac.uk/ols/ontologies/ncro/terms?iri=http://purl.obolibrary.org/obo/NCRO_$1 False NCRO NCRO ncro NCRO +ndc National Drug Code The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily. ^\d+\-\d+\-\d+ 0002-1975-61 https://identifiers.org/ndc:$1 False ndc ndc NDC +nddf National Drug Data File 002678 False NDDF +ndex Network Data Exchange https://www.ndexbio.org The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge. aa78a43f-9c4d-11eb-9e72-0ac135e8bacf https://www.ndexbio.org/viewer/networks/$1 False +ndfrt National Drug File - Reference Terminology N0000001662 NUI|ndf-rt False NDFRT P2115 +nemo Neural ElectroMagnetic Ontology This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects. [a-z]{3}-[a-km-z0-9]{7} smp-m3w9hbe https://identifiers.org/nemo:$1 False NEMO nemo +neurolex NeuroLex The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex). ^([Bb]irnlex_|Sao|nlx_|GO_|CogPO|HDO|nifext_)\d+$ Birnlex_721 https://identifiers.org/neurolex:$1 False neurolex neurolex NEUROLEX +neuromorpho NeuroMorpho NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons. ^\w+$ Rosa2 https://identifiers.org/neuromorpho:$1 False neuromorpho neuromorpho NEUROMORPHO +neuronames NeuroNames http://braininfo.rprc.washington.edu/ 268 https://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1 False +neurondb NeuronDB NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments. ^\d+$ 265 https://identifiers.org/neurondb:$1 False neurondb neurondb NEURONDB +neurovault.collection NeuroVault Collection Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images. ^[1-9][0-9]*$ 3304 https://identifiers.org/neurovault.collection:$1 False neurovault.collection neurovault.collection NEUROVAULT.COLLECTION +neurovault.image NeuroVault Image Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images. ^[1-9][0-9]*$ 58788 https://identifiers.org/neurovault.image:$1 False neurovault.image neurovault.image NEUROVAULT.IMAGE +nextdb Nematode Expression Pattern DataBase http://nematode.lab.nig.ac.jp/ NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones. ^[A-Za-z0-9]+$ 6b1 https://identifiers.org/nextdb:$1 False nextdb nextdb NEXTDB +nextprot nextProt neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases. ^NX_\w+ NX_O00165 https://identifiers.org/nextprot:$1 NXP False nextprot nextprot NEXTPROT neXtProt +nextprot.family neXtProt family ^\d+$ 01406 https://www.nextprot.org/term/FA-$1 NXPFA False +ngl NASA GeneLab NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA. ^GLDS-\d+$ GLDS-141 https://identifiers.org/ngl:$1 False ngl ngl NGL +niaest NIA Mouse cDNA Project http://esbank.nia.nih.gov/ A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones. ^\w\d{4}\w\d{2}(\-[35])?$ J0705A10 https://identifiers.org/niaest:$1 False niaest niaest NIAEST +nist NIST Chemistry WebBook https://webbook.nist.gov/chemistry/ NIST Chemistry WebBook|NIST False +nlm National Library of Medicine (NLM) Catalog 101775319 https://www.ncbi.nlm.nih.gov/nlmcatalog/$1 False +nlxanat NeuroLex Anatomy 090201 http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1 False +nlxdys NeuroLex Dysfunction 20090303 http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1 False +nmr NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi. ^NMR:\d+$ 1000003 schober@imbi.uni-freiburg.de https://identifiers.org/NMR:$1 https://nmrml.org/cv/stable/nmrCV.owl nmrcv True NMR nmr nmr NMR nmrcv NMR +nmrshiftdb2 NMR Shift Database NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. ^[0-9]+$ 234 https://identifiers.org/nmrshiftdb2:$1 False nmrshiftdb2 +nomen NOMEN - A nomenclatural ontology for biological names https://github.com/SpeciesFileGroup/nomen NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature. diapriid@gmail.com https://www.ebi.ac.uk/ols/ontologies/nomen/terms?iri=http://purl.obolibrary.org/obo/NOMEN_$1 False NOMEN NOMEN nomen +noncodev3 NONCODE v3 NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4. ^\d+$ 377550 https://identifiers.org/noncodev3:$1 False noncodev3 noncodev3 NONCODEV3 +noncodev4.gene NONCODE v4 Gene NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions. ^NONHSAG\d{5}$ NONHSAG00001 https://identifiers.org/noncodev4.gene:$1 False noncodev4.gene noncodev4.gene NONCODEV4.GENE +noncodev4.rna NONCODE v4 Transcript NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts. ^NONHSAT\d{6}$ NONHSAT000001 https://identifiers.org/noncodev4.rna:$1 False noncodev4.rna noncodev4.rna NONCODEV4.RNA +norine Nonribosomal Peptides Database Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings. ^NOR\d+$ NOR00681 https://identifiers.org/norine:$1 False norine norine NORINE +npass Natural Product Activity and Species Source Database NPC139585 False +nuclearbd NucleaRDB NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs. ^\w+\_\w+$ prgr_human https://identifiers.org/nuclearbd:$1 False nuclearbd nuclearbd NUCLEARBD +oa Web Annotation Ontology http://www.w3.org/ns/oa http://www.w3.org/ns/oa#$1 False OA oa +oae Ontology of Adverse Events https://github.com/OAE-ontology/OAE/ The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc. yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/oae/terms?iri=http://purl.obolibrary.org/obo/OAE_$1 False OAE OAE oae OAE +oarcs Ontology of Arthropod Circulatory Systems https://github.com/aszool/oarcs OArCS is an ontology describing the Arthropod ciruclatory system. mjyoder@illinois.edu https://www.ebi.ac.uk/ols/ontologies/oarcs/terms?iri=http://purl.obolibrary.org/obo/OARCS_$1 False OARCS OARCS oarcs OARCS +oba Ontology of Biological Attributes https://github.com/obophenotype/bio-attribute-ontology A collection of biological attributes (traits) covering all kingdoms of life. ^\d{7}$ 0000001 cjmungall@lbl.gov https://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_$1 False OBA OBA oba OBA +obcs Ontology of Biological and Clinical Statistics https://github.com/obcs/obcs OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012. jiezheng@pennmedicine.upenn.edu https://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_$1 False OBCS OBCS obcs OBCS +obi Ontology for Biomedical Investigations http://obi-ontology.org The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO). ^\d{7}$ 0400109 bpeters@lji.org http://purl.obolibrary.org/obo/OBI_$1 https://github.com/obi-ontology/obi/raw/master/views/obi.obo False OBI obi obi OBI obi OBI +obib Ontology for Biobanking https://github.com/biobanking/biobanking The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology. jiezheng@pennmedicine.upenn.edu https://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_$1 False OBIB OBIB obib OBIB +obo Internal OBO and PyOBO Relations False OBO +oboinowl OBO in OWL https://github.com/geneontology/go-ontology/tree/master/contrib DbXref http://www.geneontology.org/formats/oboInOwl#$1 https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.obo False oboInOwl +occ OpenCitations Corpus The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law. ^[a-z][a-z]/[0-9]+$ br/1 https://identifiers.org/occ:$1 False occ occ +oci Open Citation Identifier "Each OCI (Open Citation Identifier) has a simple structure: oci:number-number, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entitiy - see https://opencitations.wordpress.com/2018/02/19/citations-as-first-class-data-entities-introduction/ for additional information. + +OCIs for citations stored within the OpenCitations Corpus are constructed by combining the OpenCitations Corpus local identifiers for the citing and cited bibliographic resources, separating them with a dash. For example, oci:2544384-7295288 is a valid OCI for the citation between two papers stored within the OpenCitations Corpus. + +OCIs can also be created for bibliographic resources described in an external bibliographic database, if they are similarly identified there by identifiers having a unique numerical part. For example, the OCI for the citation that exists between Wikidata resources Q27931310 and Q22252312 is oci:01027931310–01022252312. + +OCIs can also be created for bibliographic resources described in external bibliographic database such as Crossref or DataCite where they are identified by alphanumeric Digital Object Identifiers (DOIs), rather than purely numerical strings." ^[0-9]+-[0-9]+$ 1-18 https://identifiers.org/oci:$1 False oci oci OCI +ocid Ontology Concept Identifiers "'ocid' stands for ""Ontology Concept Identifiers"" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology." ocid:[0-9]{12} 190000021540 https://identifiers.org/OCID:$1 False ocid +oclc Online Computer Library Center (OCLC) WorldCat The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information. ^[0-9]+$ 634515043 https://identifiers.org/oclc:$1 False oclc oclc OCLC +odam Open Data for Access and Mining Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed. ^[A-Za-z0-9]+$ frim1 https://identifiers.org/odam:$1 False odam +odc.sci Open Data Commons for Spinal Cord Injury The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data. ^[0-9]*$ 602 https://identifiers.org/odc.sci:$1 False odc.sci +odc.tbi Open Data Commons for Traumatic Brain Injury The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data. ^[0-9]*$ 408 https://identifiers.org/odc.tbi:$1 False odc.tbi +odor Odor Molecules DataBase OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors ^\d+$ 74 https://identifiers.org/odor:$1 False odor odor ODOR +ogg The Ontology of Genes and Genomes https://bitbucket.org/hegroup/ogg OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets. yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/ogg/terms?iri=http://purl.obolibrary.org/obo/OGG_$1 False OGG OGG ogg OGG +ogi Ontology for genetic interval https://code.google.com/p/ontology-for-genetic-interval/ "OGI formalized the genomic element by defining an upper class 'genetic interval'. + +The definition of 'genetic interval' is ""the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture."" + +Related paper: + +1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology) +Yu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf) +Yu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF) + + +" https://www.ebi.ac.uk/ols/ontologies/ogi/terms?iri=http://purl.obolibrary.org/obo/OGI_$1 False OGI OGI ogi OGI +ogms Ontology for General Medical Science https://github.com/OGMS/ogms "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats. + +OGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology." 0000031 baeverma@jcvi.org https://www.ebi.ac.uk/ols/ontologies/ogms/terms?iri=http://purl.obolibrary.org/obo/OGMS_$1 False OGMS OGMS ogms OGMS +ogsf Ontology of Genetic Susceptibility Factor https://github.com/linikujp/OGSF An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process. linikujp@gmail.com https://www.ebi.ac.uk/ols/ontologies/ogsf/terms?iri=http://purl.obolibrary.org/obo/OGSF_$1 False OGSF OGSF ogsf OGSF +ohd The Oral Health and Disease Ontology https://purl.obolibrary.org/obo/ohd/home The Oral Health and Disease Ontology was created, initially, to represent the content of dental practice health records. alanruttenberg@gmail.com https://www.ebi.ac.uk/ols/ontologies/ohd/terms?iri=http://purl.obolibrary.org/obo/OHD_$1 False OHD OHD ohd OHD +ohmi Ontology of Host-Microbiome Interactions https://github.com/ohmi-ontology/ohmi OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions. yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/ohmi/terms?iri=http://purl.obolibrary.org/obo/OHMI_$1 False OHMI OHMI ohmi OHMI +ohpi Ontology of Host Pathogen Interactions https://github.com/OHPI/ohpi OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration). edong@umich.edu https://www.ebi.ac.uk/ols/ontologies/ohpi/terms?iri=http://purl.obolibrary.org/obo/OHPI_$1 False OHPI OHPI ohpi +oid OID Repository OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes. ^[\d.]+$ 2.16.840 https://identifiers.org/oid:$1 False oid oid +olatdv Medaka Developmental Stages https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv Life cycle stages for Medaka ^\d{7}$ 0000210 bgee@sib.swiss https://www.ebi.ac.uk/ols/ontologies/olatdv/terms?iri=http://purl.obolibrary.org/obo/OLATDV_$1 False OLATDV OlatDv olatdv OLATDV +om Ontology of units of Measure https://github.com/HajoRijgersberg/OM The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging hajo.rijgersberg@wur.nl https://www.ebi.ac.uk/ols/ontologies/om/terms?iri=http://purl.obolibrary.org/obo/OM_$1 False OM om +oma.grp OMA Group OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs. ^[A-Z]+$ LCSCCPN https://identifiers.org/oma.grp:$1 False oma.grp oma.grp OMA.GRP +oma.hog OMA HOGs Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. ^[0-9]{7}(\.[0-9a-z.]+)?(_[0-9]+)?$ 0459895 https://omabrowser.org/oma/hog/HOG:$1 False oma.hog +oma.protein OMA Protein OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records. ^[A-Z0-9]{5}\d+$ HUMAN16963 https://identifiers.org/oma.protein:$1 False oma.protein oma.protein OMA.PROTEIN +omia Online Mendelian Inheritance in Animals Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse). ^\d+$ 1000 https://identifiers.org/omia:$1 False omia omia OMIA +omiabis Ontologized MIABIS https://github.com/OMIABIS/omiabis-dev An ontological version of MIABIS (Minimum Information About BIobank data Sharing) mbrochhausen@gmail.com https://www.ebi.ac.uk/ols/ontologies/omiabis/terms?iri=http://purl.obolibrary.org/obo/OMIABIS_$1 False OMIABIS OMIABIS omiabis OMIABIS +omit Ontology for MicroRNA Target http://omit.cis.usouthal.edu/ The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes). ^\d{7}$ 0000069 huang@southalabama.edu https://identifiers.org/omit:$1 https://raw.githubusercontent.com/OmniSearch/omit/master/src/ontology/omit.obo OMIT False OMIT omit omit OMIT omit OMIT Q55118529 +omo OBO Metadata Ontology https://github.com/information-artifact-ontology/ontology-metadata An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO). cjmungall@lbl.gov https://www.ebi.ac.uk/ols/ontologies/omo/terms?iri=http://purl.obolibrary.org/obo/OMO_$1 False OMO OMO omo +omop Observational Medical Outcomes Partnership https://www.ohdsi.org/data-standardization/the-common-data-model/ False +omp Ontology of Microbial Phenotypes http://microbialphenotypes.org An ontology of phenotypes covering microbes ^\d{7}$ 0005067 jimhu@tamu.edu https://www.ebi.ac.uk/ols/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_$1 False OMP OMP omp OMP +omrse Ontology of Medically Related Social Entities https://github.com/ufbmi/OMRSE/wiki/OMRSE-Overview This ontology covers the domain of social entities that are related to health care, such as demographic information and the roles of various individuals and organizations. hoganwr@gmail.com https://www.ebi.ac.uk/ols/ontologies/omrse/terms?iri=http://purl.obolibrary.org/obo/OMRSE_$1 https://github.com/ufbmi/OMRSE/raw/master/omrse-full.obo False OMRSE OMRSE omrse OMRSE +oncotree OncoTree http://oncotree.mskcc.org BLL http://oncotree.mskcc.org/api/tumorTypes/search/code/$1 False +one Ontology for Nutritional Epidemiology https://github.com/cyang0128/Nutritional-epidemiologic-ontologies An ontology to standardize research output of nutritional epidemiologic studies. chen.yang@ugent.be https://www.ebi.ac.uk/ols/ontologies/one/terms?iri=http://purl.obolibrary.org/obo/ONE_$1 False ONE ONE one +ons Ontology for Nutritional Studies https://github.com/enpadasi/Ontology-for-Nutritional-Studies An ontology for description of concepts in the nutritional studies domain. francesco.vitali@ibba.cnr.it https://www.ebi.ac.uk/ols/ontologies/ons/terms?iri=http://purl.obolibrary.org/obo/ONS_$1 False ONS ONS ons +ontoneo Obstetric and Neonatal Ontology http://ontoneo.com The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby. fernanda.farinelli@gmail.com https://www.ebi.ac.uk/ols/ontologies/ontoneo/terms?iri=http://purl.obolibrary.org/obo/ONTONEO_$1 False ONTONEO ONTONEO ontoneo ONTONEO +oostt Ontology of Organizational Structures of Trauma centers and Trauma systems https://github.com/OOSTT/OOSTT An ontology built for representating the organizational components of trauma centers and trauma systems. mbrochhausen@gmail.com https://www.ebi.ac.uk/ols/ontologies/oostt/terms?iri=http://purl.obolibrary.org/obo/OOSTT_$1 False OOSTT OOSTT oostt OOSTT +opb Ontology of Physics for Biology The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms. ^OPB_\d+$ OPB_00573 https://identifiers.org/opb:$1 False OPB opb opb OPB +opl Ontology for Parasite LifeCycle https://github.com/OPL-ontology/OPL The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium. preets79@gmail.com https://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_$1 False OPL OPL opl OPL +opm Orientations of Proteins in Membranes Database The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization. ^[0-9][A-Za-z0-9]{3}$ 1h68 https://identifiers.org/opm:$1 False opm opm OPM +opmi Ontology of Precision Medicine and Investigation https://github.com/OPMI/opmi OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles. yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_$1 False OPMI OPMI opmi +orcid Open Researcher and Contributor ID https://orcid.org/ ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities. ^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$ 0000-0002-5355-2576 https://identifiers.org/orcid:$1 ORCiD|ORCID False orcid orcid ORCID P496 +ordb Olfactory Receptor Database The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs). ^\d+$ 8497 https://identifiers.org/ordb:$1 False ordb ordb ORDB +oridb.sacch OriDB Saccharomyces OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae. ^\d+$ 1 https://identifiers.org/oridb.sacch:$1 False oridb.sacch oridb.sacch ORIDB.SACCH +oridb.schizo OriDB Schizosaccharomyces OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe. ^\d+$ 1 https://identifiers.org/oridb.schizo:$1 False oridb.schizo oridb.schizo ORIDB.SCHIZO +ornaseq Ontology of RNA Sequencing http://kim.bio.upenn.edu/software/ornaseq.shtml An application ontology designed to annotate next-generation sequencing experiments performed on RNA. safisher@upenn.edu https://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_$1 False ORNASEQ ORNASEQ ornaseq +orphanet Orphanet Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases. ^\d+$ 85163 https://identifiers.org/orphanet:$1 False orphanet orphanet Orphanet Orphanet P1550 +orphanet.ordo Orphanet Rare Disease Ontology "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. +It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)." ^Orphanet(_|:)C?\d+$ Orphanet_C023 https://identifiers.org/orphanet.ordo:$1 ordo False ORDO orphanet.ordo orphanet.ordo ordo ORPHANET.ORDO +orth Orthology Ontology http://purl.org/net/orth The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way. https://www.ebi.ac.uk/ols/ontologies/orth/terms?iri=http://purl.obolibrary.org/obo/ORTH_$1 False ORTH orth +orthodb OrthoDB OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups ^\w+$ Q9P0K8 https://identifiers.org/orthodb:$1 False orthodb orthodb ORTHODB OrthoDB +oryzabase.gene Oryzabase Gene Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information. ^\d+$ 117 https://identifiers.org/oryzabase.gene:$1 False oryzabase.gene oryzabase.gene ORYZABASE.GENE +oryzabase.mutant Oryzabase Mutant Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information. ^\d+$ 21393 https://identifiers.org/oryzabase.mutant:$1 False oryzabase.mutant oryzabase.mutant ORYZABASE.MUTANT +oryzabase.reference Oryzabase Reference The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan. ^\d+$ 42840 https://identifiers.org/oryzabase.reference:$1 False oryzabase.reference oryzabase.reference +oryzabase.stage Oryzabase Stage Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information. ^\d+$ 34 https://identifiers.org/oryzabase.stage:$1 False oryzabase.stage oryzabase.stage ORYZABASE.STAGE +oryzabase.strain Oryzabase Strain Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information. ^\d+$ 1 https://identifiers.org/oryzabase.strain:$1 False oryzabase.strain oryzabase.strain ORYZABASE.STRAIN +otl Oryza Tag Line Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information. ^A[A-Z]+\d+$ AADB12 https://identifiers.org/otl:$1 False otl otl OTL +ovae Ontology of Vaccine Adverse Events http://www.violinet.org/ovae/ OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE). yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/ovae/terms?iri=http://purl.obolibrary.org/obo/OVAE_$1 False OVAE OVAE ovae OVAE +owl OWL Ontology http://www.w3.org/2002/07/owl#$1 False owl +p3db.protein P3DB Protein Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites. ^\d+$ 70 https://identifiers.org/p3db.protein:$1 False p3db.protein p3db.protein P3DB.PROTEIN +p3db.site P3DB Site Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins. ^\d+$ 65 https://identifiers.org/p3db.site:$1 False p3db.site p3db.site P3DB.SITE +paleodb Paleobiology Database The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data. ^\d+$ 83088 https://identifiers.org/paleodb:$1 False paleodb paleodb PALEODB +panorama Panorama Public https://panoramaweb.org Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible. FxnI151FMs https://panoramaweb.org/$1.url False +panther.family Protein ANalysis THrough Evolutionary Relationships Classification System http://www.pantherdb.org/ The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families. ^PTHR\d{5}(\:SF\d{1,3})?$ PTHR12345 https://identifiers.org/panther.family:$1 False panther.family panther.family PANTHER +panther.node PANTHER Node The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes. ^PTN\d{9}$ PTN000000026 https://identifiers.org/panther.node:$1 False panther.node panther.node PANTHER.NODE +panther.pathway PANTHER Pathway The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components. ^P\d{5}$ P00024 https://identifiers.org/panther.pathway:$1 False panther.pathway panther.pathway PANTHER.PATHWAY +panther.pthcmp PANTHER Pathway Component "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway +components may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation." ^G|P|U|C|S\d{5}$ P00266 https://identifiers.org/panther.pthcmp:$1 False panther.pthcmp panther.pthcmp PANTHER.PTHCMP +pass2 PASS2 http://caps.ncbs.res.in/pass2 The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity. ^\d+$ 46977 https://identifiers.org/pass2:$1 True pass2 pass2 PASS2 +pathbank PathBank https://pathbank.org ^SMP\d+$ SMP0000219 https://pathbank.org/view/$1 False +pathwaycommons Pathway Commons Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language. ^\d+$ 485991 https://identifiers.org/pathwaycommons:$1 False pathwaycommons pathwaycommons PATHWAYCOMMONS PathwayCommons +pato Phenotype And Trait Ontology https://github.com/pato-ontology/pato/ PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation. ^PATO:\d{7}$ 0001998 g.gkoutos@gmail.com https://identifiers.org/PATO:$1 False PATO pato pato PATO pato PATO +paxdb.organism PaxDb Organism PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species. ^\d+$ 9606 https://identifiers.org/paxdb.organism:$1 False paxdb.organism paxdb.organism PAXDB.ORGANISM +paxdb.protein PaxDb Protein PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels. ^\d+$ 977869 https://identifiers.org/paxdb.protein:$1 False paxdb.protein paxdb.protein PAXDB.PROTEIN +pazar Pazar Transcription Factor The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors. ^TF\w+$ TF0001053 https://identifiers.org/pazar:$1 False pazar pazar PAZAR +pco Population and Community Ontology https://github.com/PopulationAndCommunityOntology/pco The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology. ^\d{7}$ 0000021 rlwalls2008@gmail.com https://www.ebi.ac.uk/ols/ontologies/pco/terms?iri=http://purl.obolibrary.org/obo/PCO_$1 False PCO PCO pco PCO +pdb Protein Data Bank https://www.rcsb.org/ The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. ^[0-9][A-Za-z0-9]{3}$ 2gc4 https://identifiers.org/pdb:$1 wwpdb False pdb pdb PDB PDB P638 +pdb-ccd Chemical Component Dictionary The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names. ^\w{3}$ AB0 https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1 pdbechem False pdb-ccd pdb-ccd PDB-CCD +pdb.ligand Protein Data Bank Ligand The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands. ^[A-Za-z0-9]+$ TRQ https://identifiers.org/pdb.ligand:$1 PDB_CHEM_ID False pdb.ligand pdb.ligand PDB.LIGAND P3636 +pdbe Protein Data Bank in Europe False +pdro The Prescription of Drugs Ontology https://github.com/OpenLHS/PDRO An ontology to describe entities related to prescription of drugs paul.fabry@usherbrooke.ca https://www.ebi.ac.uk/ols/ontologies/pdro/terms?iri=http://purl.obolibrary.org/obo/PDRO_$1 False PDRO PDRO pdro PDRO +pdumdv Platynereis Developmental Stages https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv Life cycle stages for Platynereis dumerilii ^\d{7}$ 0001410 bgee@sib.swiss https://www.ebi.ac.uk/ols/ontologies/pdumdv/terms?iri=http://purl.obolibrary.org/obo/PDUMDV_$1 PdumDv False PDUMDV PdumDv pdumdv PDUMDV +peco Plant Experimental Conditions Ontology http://planteome.org/ The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies. ^(P)?EO\:\d{7}$ 0007114 jaiswalp@science.oregonstate.edu https://identifiers.org/EO:$1 https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo eo False PECO eo eo PECO peco PECO +ped Protein Ensemble Database The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins. ^PED\d{5}$ PED00037 https://identifiers.org/ped:$1 False ped +ped.ensemble Protein Ensemble Database ensemble The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins. ^PED\d{5}e\d{3}$ PED00017e001 https://identifiers.org/ped.ensemble:$1 False ped.ensemble +peff PSI Extended File Format https://www.psidev.info/peff 0001011 https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo True +peptideatlas PeptideAtlas The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools. ^PAp[0-9]{8}$ PAp00000009 https://identifiers.org/peptideatlas:$1 False peptideatlas peptideatlas PEPTIDEATLAS PeptideAtlas +peptideatlas.dataset PeptideAtlas Dataset Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas. ^PASS\d{5}$ PASS01237 https://identifiers.org/peptideatlas.dataset:$1 False peptideatlas.dataset peptideatlas.dataset +peroxibase Peroxibase Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences. ^\d+$ 5282 https://identifiers.org/peroxibase:$1 False peroxibase peroxibase PEROXIBASE PeroxiBase +pesticides Alan Wood's Pesticides http://www.alanwood.net/pesticides derivatives%2Fthiocyclam%20hydrochloride http://www.alanwood.net/pesticides/$1.html False +pfam Pfam database of protein families http://pfam.xfam.org The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored. ^PF\d{5}$ PF11779 https://identifiers.org/pfam:$1 PF False pfam pfam PFAM Pfam P3519 +pfam.clan Pfam Clans False +pfr Proteoform Atlas ^\d+$ 1001 http://repository.topdownproteomics.org/proteoforms/$1 TDR False +pgs Polygenic Score Catalog The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation. ^PGS[0-9]{6}$ PGS000018 https://identifiers.org/pgs:$1 False pgs +pgx Progenetix "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt ""neoplasm"" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs." ^\w{3,15}[-_]\w[\w.-]{3,128}$ pgxbs-kftva5zv https://identifiers.org/pgx:$1 False pgx pgx PGX +pharmgkb.disease PharmGKB Disease The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. ^PA\d+$ PA447218 https://identifiers.org/pharmgkb.disease:$1 False pharmgkb.disease pharmgkb.disease PHARMGKB.DISEASE P7001 +pharmgkb.drug PharmGKB Drug The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. ^PA\d+$ PA448710 https://identifiers.org/pharmgkb.drug:$1 False pharmgkb.drug pharmgkb.drug PHARMGKB.DRUG P7001 +pharmgkb.gene Pharmacogenetics and Pharmacogenomics Knowledge Base https://www.pharmgkb.org The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. ^PA\w+$ PA131 https://identifiers.org/pharmgkb.gene:$1 False PHARMGKB pharmgkb.gene pharmgkb.gene PHARMGKB.GENE P7001 +pharmgkb.pathways PharmGKB Pathways "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. +PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies." ^PA\d+$ PA146123006 https://identifiers.org/pharmgkb.pathways:$1 False pharmgkb.pathways pharmgkb.pathways PHARMGKB.PATHWAYS P7001 +phenolexplorer Phenol-Explorer Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis. ^\d+$ 75 https://identifiers.org/phenolexplorer:$1 False phenolexplorer phenolexplorer PHENOLEXPLORER +phi PHI-base Ontology Pathogen-Host Interaction database Ontology used by Ensembl https://www.ebi.ac.uk/ols/ontologies/phi/terms?iri=http://purl.obolibrary.org/obo/PHI_$1 False phi +phipo Pathogen Host Interaction Phenotype Ontology https://github.com/PHI-base/phipo Ontology of species-neutral phenotypes observed in pathogen-host interactions. ^\d{7}$ 0000001 alayne.cuzick@rothamsted.ac.uk https://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_$1 False PHIPO PHIPO phipo +phosphopoint.kinase PhosphoPoint Kinase PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information. ^\w+$ AURKA https://identifiers.org/phosphopoint.kinase:$1 False phosphopoint.kinase phosphopoint.kinase PHOSPHOPOINT.KINASE +phosphopoint.protein PhosphoPoint Phosphoprotein PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information. ^\w+$ AURKA https://identifiers.org/phosphopoint.protein:$1 False phosphopoint.protein phosphopoint.protein PHOSPHOPOINT.PROTEIN +phosphosite.protein PhosphoSite Protein PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database. ^\d{5}$ 12300 https://identifiers.org/phosphosite.protein:$1 False phosphosite.protein phosphosite.protein PHOSPHOSITE.PROTEIN +phosphosite.residue PhosphoSite Residue PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence. ^\d+$ 2842 https://identifiers.org/phosphosite.residue:$1 False phosphosite.residue phosphosite.residue PHOSPHOSITE.RESIDUE +phylomedb PhylomeDB PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins. ^\w+$ Phy000CLXM_RAT https://identifiers.org/phylomedb:$1 False phylomedb phylomedb PHYLOMEDB PhylomeDB +phytozome.locus Plant Genome Network http://phytozome.jgi.doe.gov/pz/portal.html Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information. ^[A-Za-z0-9]+$ Glyma0021s00410 https://identifiers.org/phytozome.locus:$1 JGI Phytozome False phytozome.locus phytozome.locus PHYTOZOME.LOCUS +pictar PicTar https://pictar.mdc-berlin.de/ hsa-let-7a pictar-vert True +pid.pathway NCI Pathway Interaction Database: Pathway The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information. ^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$ eff796f3-6195-11e5-8ac5-06603eb7f303 https://identifiers.org/pid.pathway:$1 pid False pid.pathway pid.pathway PID.PATHWAY +pigqtldb Animal Genome Pig QTL The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs. ^\d+$ 14 https://identifiers.org/pigqtldb:$1 False pigqtldb pigqtldb PIGQTLDB +pina Protein Interaction Network Analysis Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ Q13485 https://identifiers.org/pina:$1 False pina pina PINA +piroplasma PiroplasmaDB PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^TA\d+$ TA14985 https://identifiers.org/piroplasma:$1 False piroplasma piroplasma PIROPLASMA +pirsf PIR Superfamily Classification System http://pir.georgetown.edu/pirsf/ The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships. ^PIRSF\d{6}$ PIRSF000100 https://identifiers.org/pirsf:$1 False pirsf pirsf PIRSF PIRSF +pkdb PK-DB PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. ^PKDB[0-9]{5}$ PKDB00198 https://identifiers.org/pkdb:$1 False pkdb +plana planaria-ontology https://github.com/obophenotype/planaria-ontology PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes. ^\d{7}$ 0000001 smr@stowers.org https://www.ebi.ac.uk/ols/ontologies/plana/terms?iri=http://purl.obolibrary.org/obo/PLANA_$1 False PLANA PLANA plana PLANA +planp Planarian Phenotype Ontology https://github.com/obophenotype/planarian-phenotype-ontology Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea. ^\d+$ 0000001 smr@stowers.org https://www.ebi.ac.uk/ols/ontologies/planp/terms?iri=http://purl.obolibrary.org/obo/PLANP_$1 False PLANP PLANP planp +planttfdb Plant Transcription Factor Database The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors. ^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$ Ath_AT1G01030.1 https://identifiers.org/planttfdb:$1 False planttfdb planttfdb PLANTTFDB +plasmodb PlasmoDB Plasmodium Genome Resource http://plasmodb.org/ AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^\w+$ PF11_0344 https://identifiers.org/plasmodb:$1 ApiDB_PlasmoDB False plasmodb plasmodb PLASMODB +plo Plasmodium Life Cycle http://www.sanger.ac.uk/Users/mb4/PLO/ mb4@sanger.ac.uk True PLO PLO +pmap.cutdb CutDB The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites). ^\d+$ 25782 https://identifiers.org/pmap.cutdb:$1 False pmap.cutdb pmap.cutdb PMAP.CUTDB +pmap.substratedb SubstrateDB The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates. ^\d+$ 1915 https://identifiers.org/pmap.substratedb:$1 False pmap.substratedb pmap.substratedb PMAP.SUBSTRATEDB +pmc Pubmed Central https://www.ncbi.nlm.nih.gov/pmc/ PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature. PMC\d+ PMC3084216 https://identifiers.org/pmc:$1 PMCID|PMC False pmc pmc PMCID P932 +pmdb Protein Model Database The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques. ^PM\d{7} PM0012345 https://identifiers.org/pmdb:$1 False pmdb pmdb PMDB +pmp Protein Model Portal The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers. ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ Q0VCA6 https://identifiers.org/pmp:$1 False pmp pmp PMP +po Plant Ontology http://browser.planteome.org/amigo The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. ^PO:\d+$ 0009089 jaiswalp@science.oregonstate.edu https://identifiers.org/PO:$1 False PO po po PO po PO +pocketome Pocketome Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries. ^[A-Za-z_0-9]+ 1433C_TOBAC_1_252 https://identifiers.org/pocketome:$1 False pocketome pocketome POCKETOME +polbase PolBase Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity. ^[A-Za-z-0-9]+$ 19-T4 https://identifiers.org/polbase:$1 False polbase polbase POLBASE +pombase PomBase https://www.pombase.org/ PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets. ^S\w+(\.)?\w+(\.)?$ SPCC13B11.01 https://identifiers.org/pombase:$1 PomBase False pombase pombase PomBase PomBase P6245 +poro Porifera Ontology https://github.com/obophenotype/porifera-ontology An ontology describing the anatomical structures and characteristics of Porifera (sponges) ^\d{7}$ 0000550 robert.thacker@stonybrook.edu https://www.ebi.ac.uk/ols/ontologies/poro/terms?iri=http://purl.obolibrary.org/obo/PORO_$1 False PORO PORO poro PORO +ppdb Pesticide Properties DataBase https://sitem.herts.ac.uk/aeru/ppdb/ 1484 https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm False +ppo Plant Phenology Ontology https://github.com/PlantPhenoOntology/PPO An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales. rlwalls2008@gmail.com https://www.ebi.ac.uk/ols/ontologies/ppo/terms?iri=http://purl.obolibrary.org/obo/PPO_$1 False PPO PPO ppo PPO +ppr Eurpoe PMC Preprints Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000. ppr103739 https://europepmc.org/article/ppr/$1 False +pr PRotein Ontology (PRO) http://proconsortium.org The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies. ^PR:P?\d+$ 000000024 dan5@georgetown.edu https://identifiers.org/PR:$1 PR|PRO False PR pr pr PR pr PR PRO P4926 +pride PRIDE Controlled Vocabulary https://github.com/PRIDE-Utilities/pride-ontology The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays. ^\d+$ 1 https://identifiers.org/pride:$1 False pride pride pride PRIDE PRIDE +pride.project PRIDE Project The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects. ^P(X|R)D\d{6}$ PXD000440 https://identifiers.org/pride.project:$1 False pride.project pride.project PRIDE.PROJECT +prints PRINTS compendium of protein fingerprints http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/ PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours. ^PR\d{5}$ PR00001 https://identifiers.org/prints:$1 False prints prints PRINTS PRINTS +probonto Probability Distribution Ontology http://probonto.org ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities. ^PROB_c\d+$ PROB_c0000005 probonto.dev@gmail.com https://identifiers.org/probonto:$1 False probonto probonto probonto PROBONTO +prodom ProDom ProDom is a database of protein domain families generated from the global comparison of all available protein sequences. ^PD\d+$ PD10000 https://identifiers.org/prodom:$1 False prodom prodom PRODOM +proglyc ProGlycProt ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information. ^[A-Z]C\d{1,3}$ AC119 https://identifiers.org/proglyc:$1 False proglyc proglyc PROGLYC +prosite Prosite database of protein families and domains https://prosite.expasy.org/ PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them. ^PS\d{5}$ PS00001 https://identifiers.org/prosite:$1 False prosite prosite PROSITE PROSITE P4355 +protclustdb ProtClustDB ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters. ^\w+$ O80725 https://identifiers.org/protclustdb:$1 False protclustdb protclustdb PROTCLUSTDB +proteomicsdb.peptide ProteomicsDB Peptide ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein. ^\d+$ 53504 https://identifiers.org/proteomicsdb.peptide:$1 False proteomicsdb.peptide proteomicsdb.peptide PROTEOMICSDB.PEPTIDE +proteomicsdb.protein ProteomicsDB Protein ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins. ^\d+$ 53504 https://identifiers.org/proteomicsdb.protein:$1 False proteomicsdb.protein proteomicsdb.protein PROTEOMICSDB.PROTEIN +protonet.cluster ProtoNet Cluster ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information. ^\d+$ 4349895 https://identifiers.org/protonet.cluster:$1 False protonet.cluster protonet.cluster PROTONET.CLUSTER +protonet.proteincard ProtoNet ProteinCard ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information. ^\d+$ 16941567 https://identifiers.org/protonet.proteincard:$1 False protonet.proteincard protonet.proteincard PROTONET.PROTEINCARD +prov PROV Namespace https://www.w3.org/ns/prov Activity https://www.w3.org/ns/prov#$1 False prov prov +pscdb Protein Structural Change Database The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion. ^\d+$ 051 https://identifiers.org/pscdb:$1 False pscdb pscdb PSCDB +psdo Performance Summary Display Ontology https://github.com/Display-Lab/psdo "Performance Summary Display Ontology (PSDO) (pronounced ""pseudo"" or ""sudo"") is an application ontology about charts, tables, and graphs that are used to communicate performance information to employees and teams in organizations. PSDO's domain focus is on healthcare organizations that use performance summary displays in clinical dashboards and feedback interventions for healthcare professionals and teams. The displays commonly show information about the quality of care and health outcomes that has been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is not peer-reviewed." zachll@umich.edu https://www.ebi.ac.uk/ols/ontologies/psdo/terms?iri=http://purl.obolibrary.org/obo/PSDO_$1 False PSDO PSDO psdo +pseudogene PseudoGene http://www.pseudogene.org PGOHUM00000289843 pseudogene.org False pseudo +pseudomonas Pseudomonas Genome Database The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation. ^P\w+$ PSEEN0001 https://identifiers.org/pseudomonas:$1 False pseudomonas pseudomonas PSEUDOMONAS +psipar Protein Affinity Reagents Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms. ^PAR:\d+$ PAR:0116 https://identifiers.org/psipar:$1 False psipar psipar PSIPAR +pso Plant Stress Ontology https://github.com/Planteome/plant-stress-ontology The Plant Stress Ontology describes... cooperl@science.oregonstate.edu https://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_$1 False PSO PSO pso +pspub Phenoscape Publication False +pubchem.bioassay NCBI PubChem database of bioassay records https://pubchem.ncbi.nlm.nih.gov PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results. ^\d+$ 1018 https://identifiers.org/pubchem.bioassay:$1 False pubchem.bioassay pubchem.bioassay PUBCHEM.BIOASSAY +pubchem.compound NCBI PubChem database of chemical structures http://pubchem.ncbi.nlm.nih.gov PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records. ^\d+$ 100101 https://identifiers.org/pubchem.compound:$1 DSSTox_CID|CID|pubchem_id|PUBCHEM_CID|Pubchem|PubChem_Compound_CID False pubchem.compound pubchem.compound CID P662 +pubchem.substance NCBI PubChem database of chemical substances https://www.ncbi.nlm.nih.gov/pcsubstance PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records. ^\d+$ 100101 https://identifiers.org/pubchem.substance:$1 DSSTox_Generic_SID False pubchem.substance pubchem.substance PUBCHEM.SUBSTANCE P2153 +publons.researcher Publons Researcher ID https://publons.com/researcher/$1 False +pubmed PubMed https://www.ncbi.nlm.nih.gov/pubmed PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s. ^\d+$ 16333295 https://identifiers.org/pubmed:$1 pmid|PMID|MEDLINE False pubmed pubmed PMID P698 +pw Pathway ontology http://rgd.mcw.edu/rgdweb/ontology/search.html The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions. ^PW:\d{7}$ 0000423 gthayman@mcw.edu https://identifiers.org/PW:$1 ftp://ftp.rgd.mcw.edu/pub/data_release/ontology_obo_files/pathway/pathway.obo False PW pw pw PW pw PW P7333 +px ProteomeXchange The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination. ^(R)?PXD\d{6}$ PXD000500 https://identifiers.org/px:$1 False px px PX +qtldb Animal Genome QTL The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent. ^\d+$ 4685 https://identifiers.org/qtldb:$1 False qtldb +qudt Quantities, Units, Dimensions, and Types Ontology baseDimensionEnumeration http://qudt.org/schema/qudt#$1 False QUDT +rapdb.locus RAP-DB Locus Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB. ^Os\S+g\d{7}$ Os01g0883800 https://identifiers.org/rapdb.locus:$1 False rapdb.locus +rapdb.transcript RAP-DB Transcript Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB. ^Os\S+t\d{7}-\d{2}$ Os01t0883800-02 https://identifiers.org/rapdb.transcript:$1 False rapdb.transcript +rbk Rebuilding a Kidney (Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function. ^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$ Q-2958 https://identifiers.org/rbk:$1 False rbk rbk RBK +rbo Radiation Biology Ontology https://github.com/Radiobiology-Informatics-Consortium/RBO RBO is an ontology for the effects of radiation on biota in terrestrial and space environments. daniel.c.berrios@nasa.gov https://www.ebi.ac.uk/ols/ontologies/rbo/terms?iri=http://purl.obolibrary.org/obo/RBO_$1 False RBO RBO rbo +rdf Resource Description Framework http://www.w3.org/1999/02/22-rdf-syntax-ns RDF http://www.w3.org/1999/02/22-rdf-syntax-ns#$1 False rdf +rdfs RDF Schema https://www.w3.org/TR/rdf-schema/ label http://www.w3.org/2000/01/rdf-schema#$1 False RDFS rdfs +rdo RGD Disease_Ontology https://ratmine.mcw.edu/ontology/disease/RDO.obo False +reactome Reactome - a curated knowledgebase of biological pathways https://www.reactome.org/ The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology. (^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$)|(^REACT_\d+(\.\d+)?$) R-BTA-418592 https://identifiers.org/reactome:$1 RE|REACT False reactome reactome REACT Reactome P3937 +reaxys Reaxys https://www.reaxys.com 1257009 Reaxys|Beilstein False P1579 +rebase REBASE restriction enzyme database http://rebase.neb.com/rebase/rebase.html REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data. ^\d+$ 101 https://identifiers.org/rebase:$1 False rebase rebase REBASE REBASE +receptome.family Human Plasma Membrane Receptome Families http://www.receptome.org 5.1 http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1 False +refseq Reference Sequence Collection http://www.ncbi.nlm.nih.gov/RefSeq/ The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products. ^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\d+)|(NZ\_[A-Z]{2,4}\d+))(\.\d+)?$ NP_012345 https://identifiers.org/refseq:$1 REFSEQ_PROT False refseq refseq RefSeq RefSeq +repeatsdb.protein RepeatsDB Protein RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database. ^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$ P29894 https://identifiers.org/repeatsdb.protein:$1 False repeatsdb.protein +repeatsdb.structure RepeatsDB Structure RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database. ^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$ 2gc4E https://identifiers.org/repeatsdb.structure:$1 False repeatsdb.structure +reproduceme REPRODUCE-ME Ontology https://w3id.org/reproduceme/research The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility. sheeba.samuel@uni-jena.de https://www.ebi.ac.uk/ols/ontologies/reproduceme/terms?iri=http://purl.obolibrary.org/obo/REPRODUCEME_$1 False REPRODUCE-ME reproduceme +resid Protein covalent bond http://www.ebi.ac.uk/RESID/ The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications. ^AA\d{4}$ AA0001 john.garavelli@ebi.ac.uk https://identifiers.org/resid:$1 True resid resid RESID RESID +reto Regulation of Transcription Ontology http://www.semantic-systems-biology.org/apo Regulation of Transcription vladimir.n.mironov@gmail.com https://www.ebi.ac.uk/ols/ontologies/reto/terms?iri=http://purl.obolibrary.org/obo/RETO_$1 False RETO reto +rex Physico-chemical process An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. https://www.ebi.ac.uk/ols/ontologies/rex/terms?iri=http://purl.obolibrary.org/obo/REX_$1 http://purl.obolibrary.org/obo/rex.owl False REX REX rex REX +rexo Regulation of Gene Expression Ontology http://www.semantic-systems-biology.org/apo Regulation of Gene Expression vladimir.n.mironov@gmail.com https://www.ebi.ac.uk/ols/ontologies/rexo/terms?iri=http://purl.obolibrary.org/obo/REXO_$1 False REXO rexo +rfam Rfam database of RNA families https://rfam.org The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion. ^RF\d{5}$ RF00230 https://identifiers.org/rfam:$1 False rfam rfam RFAM +rgd Rat Genome Database https://rgd.mcw.edu/ Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes. ^\d{4,}$ 7499841 https://identifiers.org/rgd:$1 RGD False RGD rgd rgd RGD RGD P3853 +rgd.qtl Rat Genome Database qTL Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes. ^\d+$ 1354581 https://identifiers.org/rgd.qtl:$1 False rgd.qtl rgd.qtl RGD.QTL +rgd.strain Rat Genome Database strain Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology. ^\d+$ 5688061 https://identifiers.org/rgd.strain:$1 False rgd.strain rgd.strain RGD.STRAIN +rhea Rhea, the Annotated Reactions Database https://www.rhea-db.org " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants. + +Rhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB." ^\d{5}$ 12345 https://identifiers.org/rhea:$1 RHEA False rhea rhea RHEA +ricegap Rice Genome Annotation Project The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines. ^LOC\_Os\d{1,2}g\d{5}$ LOC_Os02g13300 https://identifiers.org/ricegap:$1 False ricegap ricegap RICEGAP +ricenetdb.compound RiceNetDB Compound RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. ^OSC\d{4}$ OSC1416 https://identifiers.org/ricenetdb.compound:$1 False ricenetdb.compound ricenetdb.compound RICENETDB.COMPOUND +ricenetdb.gene RiceNetDB Gene RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. ^LOC\_Os\d{1,2}g\d{5}\.\d$ LOC_Os01g49190.1 https://identifiers.org/ricenetdb.gene:$1 False ricenetdb.gene ricenetdb.gene RICENETDB.GENE +ricenetdb.mirna RiceNetDB miRNA RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. ^osa-miR\d{3,5}[a-z]{0,1}$ osa-miR446 https://identifiers.org/ricenetdb.mirna:$1 False ricenetdb.mirna ricenetdb.mirna RICENETDB.MIRNA +ricenetdb.protein RiceNetDB Protein RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. ^LOC\_Os\d{1,2}g\d{5}$ LOC_Os01g49190 https://identifiers.org/ricenetdb.protein:$1 False ricenetdb.protein ricenetdb.protein RICENETDB.PROTEIN +ricenetdb.reaction RiceNetDB Reaction RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping. ^OSR\d{4}$ OSR0818 https://identifiers.org/ricenetdb.reaction:$1 False ricenetdb.reaction ricenetdb.reaction RICENETDB.REACTION +rnacentral RNAcentral https://rnacentral.org RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases. ^URS[0-9A-F]{10}(\_\d+)?$ URS0000759CF4 https://identifiers.org/rnacentral:$1 LNCRNADB False rnacentral rnacentral RNACENTRAL +rnamod The RNA Modification Database http://rna.rega.kuleuven.be/rnamods/ 051 http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1 False +rnamods RNA Modification Database https://mods.rna.albany.edu/ The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA. ^\d{3}$ 101 https://identifiers.org/rnamods:$1 False rnamods rnamods RNAMODS +rnao RNA ontology https://github.com/bgsu-rna/rnao Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures. ^\d{7}$ 0000128 BatchelorC@rsc.org https://www.ebi.ac.uk/ols/ontologies/rnao/terms?iri=http://purl.obolibrary.org/obo/RNAO_$1 False RNAO RNAO rnao RNAO +ro Relation Ontology https://oborel.github.io/ The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies. ^RO_\d{7}$ RO_0002533 cjmungall@lbl.gov https://identifiers.org/ro:$1 https://github.com/oborel/obo-relations/raw/master/ro.obo obo_rel|RO_proposed_relation False RO ro ro RO ro OBO_REL P3590 +rouge Rodent Unidentified Gene-Encoded Large Proteins The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project. ^m\w+$ mKIAA4200 https://identifiers.org/rouge:$1 False rouge rouge ROUGE Rouge +rrid Research Resource Identification "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools. +The initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch." ^RRID:[a-zA-Z]+.+$ AB_262044 https://identifiers.org/RRID:$1 False rrid rrid RRID +rs Rat Strain Ontology http://rgd.mcw.edu/rgdweb/search/strains.html Ontology of rat strains ^\d{7}$ 0001807 sjwang@mcw.edu https://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_$1 False RS RS rs RS +runbiosimulations runBioSimulations runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive. [0-9a-z]{24,24} 5fde96bdc5f1aa9ff0cce18a https://identifiers.org/runbiosimulations:$1 False runbiosimulations +rxno Name Reaction Ontology https://github.com/rsc-ontologies/rxno RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization. ^\d{7}$ 0000253 batchelorc@rsc.org https://www.ebi.ac.uk/ols/ontologies/rxno/terms?iri=http://purl.obolibrary.org/obo/RXNO_$1 https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo False RXNO RXNO rxno RXNO P2106 +rxnorm RxNorm ^[0-9]{1,7}$ 221058 https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1 RXCUI False RXNORM RXCUI P3345 +sabiork.compound SABIO-RK Compound SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information. ^\d+$ 75 https://identifiers.org/sabiork.compound:$1 False sabiork.compound sabiork.compound +sabiork.ec SABIO-RK EC Record SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data. ^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$ 2.7.1.1 https://identifiers.org/sabiork.ec:$1 False sabiork.ec sabiork.ec SABIORK.EC +sabiork.kineticrecord SABIO Reaction Kinetics http://sabio.villa-bosch.de/ SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information. ^\d+$ 5046 https://identifiers.org/sabiork.kineticrecord:$1 False sabiork.kineticrecord sabiork.kineticrecord SABIORK.KINETICRECORD +sabiork.reaction SABIO-RK Reaction SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information. ^\d+$ 75 https://identifiers.org/sabiork.reaction:$1 False sabiork.reaction sabiork.reaction SABIORK.REACTION +sael Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List (SAEL) True +salk Salk Institute for Biological Studies Accession 037727 https://abrc.osu.edu/stocks/number/SALK_$1 False +sao Subcellular Anatomy Ontology http://ccdb.ucsd.edu/CCDBWebSite/sao.html slarson@ncmir.ucsd.edu True SAO SAO SAO +sasbdb Small Angle Scattering Biological Data Bank Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data. ^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$ SASDAX8 https://identifiers.org/sasbdb:$1 False sasbdb sasbdb SASBDB SASBDB +sbo Systems Biology Ontology http://www.ebi.ac.uk/sbo/ The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort. ^SBO:\d{7}$ 0000485 sheriff@ebi.ac.uk https://identifiers.org/SBO:$1 False SBO sbo sbo SBO sbo SBO +scdo Sickle Cell Disease Ontology https://scdontology.h3abionet.org/ An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease. giant.plankton@gmail.com https://www.ebi.ac.uk/ols/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_$1 False SCDO SCDO scdo +scop Structural Classification of Protein The SCOP (Structural Classification of Protein) database is a comprehensive ordering of all proteins of known structure according to their evolutionary, functional and structural relationships. The basic classification unit is the protein domain. Domains are hierarchically classified into species, proteins, families, superfamilies, folds, and classes. ^\d+$ 47419 https://identifiers.org/scop:$1 False scop scop SCOP +scopus Scopus Researcher Identifier ^\d+$ 56305849200 False +scretf ScerTF ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor. ^\w+$ RSC3 https://identifiers.org/scretf:$1 False scretf scretf SCRETF +sdbs Spectral Database for Organic Compounds The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra. \d+$ 4544 https://identifiers.org/sdbs:$1 False sdbs sdbs SDBS +sdgio Sustainable Development Goals Interface Ontology https://github.com/SDG-InterfaceOntology/sdgio An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators. https://www.ebi.ac.uk/ols/ontologies/sdgio/terms?iri=http://purl.obolibrary.org/obo/SDGIO_$1 False sdgio +seed The SEED; http://www.theseed.org This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems. ^\w+$ Biotin_biosynthesis https://identifiers.org/seed:$1 False seed seed SEED +seed.compound SEED Compound This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems. ^cpd\d+$ cpd15380 https://identifiers.org/seed.compound:$1 False seed.compound seed.compound SEED.COMPOUND +seed.reaction SEED Reactions ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions. ^rxn\d+$ rxn00001 https://identifiers.org/seed.reaction:$1 False seed.reaction seed.reaction +sepio Scientific Evidence and Provenance Information Ontology https://github.com/monarch-initiative/SEPIO-ontology An ontology for representing the provenance of scientific claims and the evidence that supports them. mhb120@gmail.com https://www.ebi.ac.uk/ols/ontologies/sepio/terms?iri=http://purl.obolibrary.org/obo/SEPIO_$1 False SEPIO SEPIO sepio SEPIO +sgd Saccharomyces Genome Database http://www.yeastgenome.org/ The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae. ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$ S000002493 https://identifiers.org/sgd:$1 False sgd sgd SGD SGD P3406 +sgd.pathways Saccharomyces genome database pathways Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD). ^PWY\w{2}\-\d{3}$ PWY3O-214 https://identifiers.org/sgd.pathways:$1 False sgd.pathways sgd.pathways SGD.PATHWAYS +sgn Sol Genomics Network https://www.sgn.cornell.edu/ The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant. ^\d+$ 0001 https://identifiers.org/sgn:$1 False sgn sgn SGN +sheepqtldb Animal Genome Sheep QTL The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs. ^\d+$ 19803 https://identifiers.org/sheepqtldb:$1 False sheepqtldb sheepqtldb SHEEPQTLDB +sibo Social Insect Behavior Ontology https://github.com/obophenotype/sibo Social Behavior in insects ^\d{7}$ 0000509 cjmungall@lbl.gov https://www.ebi.ac.uk/ols/ontologies/sibo/terms?iri=http://purl.obolibrary.org/obo/SIBO_$1 False SIBO SIBO sibo SIBO +sider.drug SIDER Drug SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER. ^\d+$ 2244 https://identifiers.org/sider.drug:$1 False sider.drug sider.drug SIDER.DRUG +sider.effect SIDER Side Effect SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER. ^C\d+$ C0017565 https://identifiers.org/sider.effect:$1 False sider.effect sider.effect SIDER.EFFECT +signaling-gateway Signaling Gateway The Signaling Gateway provides information on mammalian proteins involved in cellular signaling. A\d{6}$ A001094 https://identifiers.org/signaling-gateway:$1 False signaling-gateway signaling-gateway SIGNALING-GATEWAY +signor Signaling Network Open Resource SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature. ^SIGNOR\-[A-Z]+\d+$ SIGNOR-C41 https://identifiers.org/signor:$1 SIGNOR False signor SIGNOR +sio Semanticscience Integrated Ontology https://github.com/micheldumontier/semanticscience The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes. sio-ontology@googlegroups.com https://www.ebi.ac.uk/ols/ontologies/sio/terms?iri=http://purl.obolibrary.org/obo/SIO_$1 False SIO sio SIO +sisu Sequencing Initiative Suomi The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies. ^[0-9]+:[0-9]+$ 17:41223048 https://identifiers.org/sisu:$1 False sisu sisu SISU +sitex SitEx SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments. ^\d+$ 1000 https://identifiers.org/sitex:$1 False sitex sitex SITEX +slm SwissLipids SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions. ^SLM:\d+$ 000048885 https://identifiers.org/SLM:$1 False slm +smart Simple Modular Architecture Research Tool http://smart.embl-heidelberg.de/ The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures. ^SM\d{5}$ SM00015 https://identifiers.org/smart:$1 False smart smart SMART SMART +smid C. elegans Small Molecule Identifier Database https://smid-db.org/ 137 https://smid-db.org/smid/$1 SMID-DB False +smiles Simplified molecular-input line-entry system COc1ccc2c(c1)OC[C@H]1[C@@H]2C2=C(OC1(C)C)C1=C(C(=O)C2=O)[C@H]2c3ccc(OC)cc3OC[C@H]2C(C)(C)O1 False P233 +smpdb Small Molecule Pathway Database The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram. ^SMP\d+$ SMP0000219 https://smpdb.ca/view/$1 SMP False smpdb smpdb SMPDB +snap Snapshot False +snomedct SNOMED CT http://snomed.info/ SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc. ^(\w+)?\d+$ 284196006 https://identifiers.org/snomedct:$1 SNOMED|SNOMECT|SNOMEDCT|SNOMED_CT|SNOMEDCTCT|SCTID|SNOWMEDCT_US|SNOWMEDCT|SNOMEDCT_US|SCTID_2010_1_31|SNOMEDCT_2010_1_31|SNOWMEDCT_US_2018_03_01|SNOMEDCT_US_2018_03_01|SNOMED_CT_US_2018_03_01|SNOMEDCT_US_2018_09_01|SNOMEDCTCT_2018_03_01|SNOMEDCT_US_2019_03_01|SNOMEDCTCT_2019_03_01|SNOMEDCT_US_2019_09_01|SNOMEDCT_US_2020_03_01|SNOMEDCT_US_2020_09_01 False SNOMEDCT snomedct snomedct SNOMED P5806 +snornabase snoRNABase https://www-snorna.biotoul.fr/ "A comprehensive database of + +human H/ACA and C/D box snoRNAs." False +snp2tfbs SNP to Transcription Factor Binding Sites SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome. ^rs[0-9]+$ rs11603840 https://identifiers.org/snp2tfbs:$1 False snp2tfbs +so Sequence types and features ontology https://github.com/The-Sequence-Ontology/SO-Ontologies The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data. ^SO:\d{7}$ 0001157 keilbeck@genetics.utah.edu https://identifiers.org/SO:$1 https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/master/Ontology_Files/so.obo False SO so so SO so SO +soybase Glycine max Genome Database http://soybase.org SoyBase is a repository for curated genetics, genomics and related data resources for soybean. ^\w+(\-)?\w+(\-)?\w+$ BARC-013845-01256 https://identifiers.org/soybase:$1 False soybase soybase SOYBASE +span Span False +spd Spider Ontology http://research.amnh.org/atol/files/ An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow). ^\d{7}$ 0000001 ramirez@macn.gov.ar https://www.ebi.ac.uk/ols/ontologies/spd/terms?iri=http://purl.obolibrary.org/obo/SPD_$1 False SPD SPD spd SPD P4537 +spdx Software Package Data Exchange License https://spdx.org/licenses The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception. ^[0-9A-Za-z\-.]+$ CC-BY-1.0 https://identifiers.org/spdx:$1 False spdx spdx +spike.map SPIKE Map SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps. ^spike\d{5}$ spike00001 https://identifiers.org/spike.map:$1 False spike.map spike.map SPIKE.MAP +splash Spectra Hash Code The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance. ^splash\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$ splash10-0zq2000000-77302b0326a418630a84 https://identifiers.org/splash:$1 False splash splash SPLASH +spp Signaling Pathways Project The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways. ^10.\w{4}/\w{10}$ 10.1621/vwN2g2HaX3 https://identifiers.org/spp:$1 False spp +srao FAIRsharing Subject Ontology https://github.com/FAIRsharing/subject-ontology The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies. contact@fairsharing.org https://www.ebi.ac.uk/ols/ontologies/srao/terms?iri=http://purl.obolibrary.org/obo/SRAO_$1 False srao +ssbd.dataset System Science of Biological Dynamics dataset https://ssbd.riken.jp 1 https://ssbd.riken.jp/database/dataset/$1 False +ssbd.project System Science of Biological Dynamics project https://ssbd.riken.jp 1 https://ssbd.riken.jp/database/project/$1 False +stap Statistical Torsional Angles Potentials STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB). ^[0-9][A-Za-z0-9]{3}$ 1a24 https://identifiers.org/stap:$1 False stap stap STAP +stato The Statistical Methods Ontology http://stato-ontology.org/ STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots. alejandra.gonzalez.beltran@gmail.com https://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_$1 False STATO STATO stato STATO +stitch Search Tool for Interactions of Chemicals STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature. ^\w{14}$ BQJCRHHNABKAKU https://identifiers.org/stitch:$1 False stitch stitch STITCH +storedb Store DB STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons. ^STOREDB:(STUDY|FILE|DATASET)\d+$ STOREDB:STUDY1040 https://identifiers.org/storedb:$1 False storedb storedb STOREDB +string Search Tool for Retrieval of Interacting Genes/Proteins "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions. +The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable." ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$ P53350 https://identifiers.org/string:$1 False string string STRING STRING +subtilist Bacillus subtilis genome sequencing project http://genolist.pasteur.fr/SubtiList/ "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria. +SubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments." ^BG\d+$ BG11523 https://identifiers.org/subtilist:$1 False subtilist subtilist SUBTILIST +subtiwiki SubtiWiki "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. +Note: Currently, direct access to RNA products is restricted. This is expected to be rectified soon." ^BSU\d{5}$ BSU29180 https://identifiers.org/subtiwiki:$1 False subtiwiki subtiwiki SUBTIWIKI +sugarbind SugarBind The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands. ^[A-Za-z]+\/[0-9]+$ lectins/172 https://identifiers.org/sugarbind:$1 False sugarbind sugarbind SUGARBIND +supfam SUPERFAMILY SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt. ^\w+$ SSF57615 https://identifiers.org/supfam:$1 False supfam supfam SUPFAM SUPFAM +swh Software Heritage Software Heritage is the universal archive of software source code. ^swh:[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\S+)*$ 1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d https://identifiers.org/SWH:$1 False swh swh SWH +swiss-model SWISS-MODEL Repository The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences. ^\w+$ P23298 https://identifiers.org/swiss-model:$1 False swiss-model swiss-model SWISS-MODEL +swisslipid SwissLipid SLM:000000341 https://www.swisslipids.org/#/entity/$1 False swisslipid SWISSLIPID P8691 +swissregulon SwissRegulon A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form. ^[A-Za-z0-9]+$ AHR https://identifiers.org/swissregulon:$1 False swissregulon swissregulon SWISSREGULON +swo Software ontology https://github.com/allysonlister/swo The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community. ^\d{7}$ 0000144 allyson.lister@oerc.ox.ac.uk https://www.ebi.ac.uk/ols/ontologies/swo/terms?iri=http://purl.obolibrary.org/obo/SWO_$1 https://github.com/allysonlister/swo/raw/master/release/swo.owl False SWO SWO swo SWO +symp Symptom Ontology http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases. ^\d{7}$ 0019171 lynn.schriml@gmail.com https://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_$1 SYMP False SYMP SYMP symp SYMP P8656 +syoid Gemina Symptom Ontology Identifier True +t3db Toxin and Toxin Target Database Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information. ^T3D\d+$ T3D0001 https://identifiers.org/t3db:$1 False t3db t3db T3DB +tads Tick Anatomy Ontology https://www.vectorbase.org/ontology-browser The anatomy of the Tick, Families: Ixodidae, Argassidae ^\d{7}$ 0000547 dsonensh@odu.edu https://www.ebi.ac.uk/ols/ontologies/tads/terms?iri=http://purl.obolibrary.org/obo/TADS_$1 http://purl.obolibrary.org/obo/tads.obo False TADS TADS tads TADS +tair.gene TAIR Gene The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus. ^Gene:\d{7}$ Gene:2200934 https://identifiers.org/tair.gene:$1 False tair.gene tair.gene TAIR.GENE +tair.locus The Arabidopsis Information Resource http://www.arabidopsis.org/ The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS. ^\d{7}$ 2200950 https://identifiers.org/tair.locus:$1 False tair.locus tair.locus TAIR +tair.protein TAIR Protein The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept ^AASequence:\d{10}$ AASequence:1009107926 https://identifiers.org/tair.protein:$1 False tair.protein tair.protein TAIR.PROTEIN +tao Teleost Anatomy Ontology http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology 0000086 wasila.dahdul@usd.edu TAO_RETIRED True TAO TAO TAO +tarbase TarBase TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used. ^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)? hsa-let-7a-2-3p https://identifiers.org/tarbase:$1 False tarbase tarbase TARBASE +taxrank Taxonomic rank vocabulary https://github.com/phenoscape/taxrank A vocabulary of taxonomic ranks (species, family, phylum, etc) ^\d{7}$ 0000001 balhoff@renci.org https://www.ebi.ac.uk/ols/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_$1 False TAXRANK TAXRANK taxrank TAXRANK +tcdb Transport Protein Database https://www.tcdb.org The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally. ^\d+(\.[A-Z])?(\.\d+)?(\.\d+)?(\.\d+)?$ 5.A.1.1.1 https://identifiers.org/tcdb:$1 TC False tcdb tcdb TCDB TCDB P7260 +te Terminologia Embryologica E5.11.2.0.0.0.4 False P1693 +tfclass Classification of Transcription Factors in Mammalia http://tfclass.bioinf.med.uni-goettingen.de 2.1.1 http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1 False +tgd Tetrahymena Genome Database http://www.ciliate.org/ The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature. ^TTHERM\_\d+$ TTHERM_00648910 https://identifiers.org/tgd:$1 False tgd tgd TGD +tgma Mosquito gross anatomy ontology https://www.vectorbase.org/ontology-browser A structured controlled vocabulary of the anatomy of mosquitoes. ^\d{7}$ 0000984 topalis@imbb.forth.gr https://www.ebi.ac.uk/ols/ontologies/tgma/terms?iri=http://purl.obolibrary.org/obo/TGMA_$1 http://purl.obolibrary.org/obo/tgma.obo False TGMA TGMA tgma TGMA +th Terminologia Histologica H3.03.00.0.00007 False +tigrfam TIGR protein families http://www.tigr.org/TIGRFAMs/index.shtml TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. ^TIGR\d+$ TIGR00010 https://identifiers.org/tigrfam:$1 False tigrfam tigrfam TIGRFAM +tissuelist Tissue List The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified. ^TS-\d{4}$ TS-0285 https://identifiers.org/tissuelist:$1 False tissuelist tissuelist TISSUELIST +to Plant Trait Ontology http://browser.planteome.org/amigo A controlled vocabulary of describe phenotypic traits in plants. ^\d{7}$ 0000630 jaiswalp@science.oregonstate.edu https://www.ebi.ac.uk/ols/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_$1 False PTO TO to TO +tol Tree of Life "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). + +Each page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things." ^\d+$ 98034 https://identifiers.org/tol:$1 False tol tol TOL +topdb Topology Data Bank of Transmembrane Proteins The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases. ^[A-Z0-9]+$ AP00378 https://identifiers.org/topdb:$1 False topdb topdb TOPDB +topfind TopFind https://topfind.clip.msl.ubc.ca TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli. ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$ Q9UKQ2 https://identifiers.org/topfind:$1 False topfind topfind TOPFIND +toxoplasma ToxoDB ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^\w+$ TGME49_053730 https://identifiers.org/toxoplasma:$1 False toxoplasma toxoplasma TOXOPLASMA +trans Pathogen Transmission Ontology https://github.com/DiseaseOntology/PathogenTransmissionOntology The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles. ^\d{7}$ 0000024 lynn.schriml@gmail.com https://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_$1 False TRANS TRANS trans TRANS +transyt Transport Systems Tracker The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes. T[A-Z]\d{7} TR0000001 https://identifiers.org/transyt:$1 False transyt +treebase TreeBASE TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc. ^TB[1,2]?:[A-Z][a-z]?\d+$ TB2:S1000 https://identifiers.org/treebase:$1 False treebase treebase TREEBASE +treefam TreeFam TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. ^\w{1,2}\d+$ TF101014 https://identifiers.org/treefam:$1 False treefam treefam TREEFAM TreeFam +trichdb TrichDB TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^\w+$ TVAG_386080 https://identifiers.org/trichdb:$1 False trichdb trichdb TRICHDB +tritrypdb TriTrypDB TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. ^\w+(\.)?\w+(\.)?\w+ Tb927.8.620 https://identifiers.org/tritrypdb:$1 False tritrypdb tritrypdb TRITRYPDB +ttd.drug TTD Drug The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target. ^DAP\d+$ DAP000773 https://identifiers.org/ttd.drug:$1 False ttd.drug ttd.drug TTD.DRUG +ttd.target TTD Target The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target. ^TTDS\d+$ TTDS00056 https://identifiers.org/ttd.target:$1 False ttd.target ttd.target TTD.TARGET +tto Teleost taxonomy ontology https://github.com/phenoscape/teleost-taxonomy-ontology An ontology covering the taxonomy of teleosts (bony fish) ^\d+$ 1058367 balhoff@renci.org https://www.ebi.ac.uk/ols/ontologies/tto/terms?iri=http://purl.obolibrary.org/obo/TTO_$1 False TTO TTO tto TTO +txpo Toxic Process Ontology https://toxpilot.nibiohn.go.jp/ "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity. + +The TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms. + +In applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp" y-yamagata@nibiohn.go.jp https://www.ebi.ac.uk/ols/ontologies/txpo/terms?iri=http://purl.obolibrary.org/obo/TXPO_$1 False TXPO TXPO txpo +uberon Uber Anatomy Ontology http://uberon.org Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. ^UBERON:\d+$ 2005080 cjmungall@lbl.gov https://identifiers.org/UBERON:$1 http://purl.obolibrary.org/obo/uberon/basic.obo UBERON|Uberon|Uber-anatomy ontology False UBERON uberon uberon UBERON uberon UBERON P1554 +ubio.namebank uBio NameBank "NameBank is a ""biological name server"" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context." ^\d+$ 2555646 https://identifiers.org/ubio.namebank:$1 False ubio.namebank ubio.namebank UBIO.NAMEBANK +ubprop Uberon Property True +ucsc UCSC Genome Browser https://genome.ucsc.edu/ uc001rvw.5 False UCSC UCSC P2576 +umbbd.compound UM-BBD Compound The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information. ^c\d+$ c0001 http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1 UM-BBD_compID False umbbd.compound umbbd.compound UMBBD.COMPOUND P8121 +umbbd.enzyme EAWAG Biocatalysis/Biodegradation Database http://eawag-bbd.ethz.ch/ The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information. ^e\d+$ e0333 http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1 UM-BBD_enzymeID False umbbd.enzyme umbbd.enzyme UMBBD.ENZYME +umbbd.pathway EAWAG Biocatalysis/Biodegradation Database http://eawag-bbd.ethz.ch/ The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information. ^\w+$ ala http://eawag-bbd.ethz.ch/$1/$1_map.html UM-BBD_pathwayID False umbbd.pathway umbbd.pathway UMBBD.PATHWAY +umbbd.reaction EAWAG Biocatalysis/Biodegradation Database http://eawag-bbd.ethz.ch/ The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information. ^r\d+$ r0001 http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1 UM-BBD_reactionID False umbbd.reaction umbbd.reaction UMBBD.REACTION +umbbd.rule EAWAG Biocatalysis/Biodegradation Database http://eawag-bbd.ethz.ch/ The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules. ^bt\d+$ bt0001 https://identifiers.org/umbbd.rule:$1 UM-BBD_ruleID False umbbd.rule umbbd.rule UMBBD.RULE +umls Unified Medical Language System The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank. ^C\d+$ C2584994 https://identifiers.org/umls:$1 UMLS|UMLS_CUI|UMLS CUI False umls umls UMLS P2892 +unigene UniGene A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location. ^\d+$ 4900 https://identifiers.org/unigene:$1 False unigene unigene UNIGENE +unii Unique Ingredient Identifier The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information. ^[A-Z0-9]+$ 3G6A5W338E https://identifiers.org/unii:$1 False unii unii UNII P652 +unimod Unimod protein modification database for mass spectrometry http://www.unimod.org/ Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide). ^\d+$ 1200 psidev-ms-vocab@lists.sourceforge.net https://identifiers.org/unimod:$1 False unimod unimod unimod UNIMOD +uniparc UniProt Archive https://www.uniprot.org/uniparc/ The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases. ^UPI[A-F0-9]{10}$ UPI000000000A https://identifiers.org/uniparc:$1 False uniparc uniparc UNIPARC +unipathway.compound UniPathway Compound UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds. ^UPC\d{5}$ UPC04349 https://identifiers.org/unipathway.compound:$1 False unipathway.compound unipathway.compound UNIPATHWAY.COMPOUND +unipathway.reaction UniPathway Reaction UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions. ^UCR\d{5}$ UCR00226 https://identifiers.org/unipathway.reaction:$1 False unipathway.reaction unipathway.reaction UNIPATHWAY.REACTION +uniprot Universal Protein Knowledgebase http://www.uniprot.org The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information. ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$ P0DP23 https://identifiers.org/uniprot:$1 UniProt|UniProtKB|uniprot/swiss-prot|SwissProt|UP False uniprot uniprot UniProtKB P352 +uniprot.chain UniProt Chain This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein. ^PRO_[0-9]{10}$ PRO_0000016681 https://identifiers.org/uniprot.chain:$1 UPPRO False uniprot.chain +uniprot.disease UniProt Diseases https://www.uniprot.org/diseases/ 04240 https://www.uniprot.org/diseases/DI-$1 DI False +uniprot.isoform UniProt Isoform The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information. ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\-\d+)$ Q5BJF6-3 https://identifiers.org/uniprot.isoform:$1 UPISO False uniprot.isoform uniprot.isoform UNIPROT.ISOFORM +uniprot.keyword UniProt Keywords http://www.uniprot.org/keywords/ KW-1273 https://www.uniprot.org/keywords/$1 UniProtKB-KW False +uniprot.location UniProt Subcellular Locations https://www.uniprot.org/locations/ ^\d+$ 0002 https://www.uniprot.org/locations/SL-$1 UPLOC|UniProtKB-SubCell False +uniprot.var UniProt Variants ^VAR_\d+$ VAR_068078 https://web.expasy.org/variant_pages/$1.html UniProtKB_VAR False +unirule UniRule https://www.uniprot.org/unirule/ Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites. UR000124451 https://www.uniprot.org/unirule/$1 False +unists Database of Sequence Tagged Sites UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences. ^\d+$ 456789 https://identifiers.org/unists:$1 False unists unists UNISTS +unite Molecular database for the identification of fungi http://unite.ut.ee/index.php UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa. ^UDB\d{6}$ UDB000691 https://identifiers.org/unite:$1 False unite unite UNITE +unpd Universal Natural Products Database http://pkuxxj.pku.edu.cn/UNPD/ False +uo Units of measurement ontology https://github.com/bio-ontology-research-group/unit-ontology Ontology of standardized units ^UO:\d{7}? 0000080 g.gkoutos@gmail.com https://identifiers.org/UO:$1 False UO uo uo UO uo UO +upa Unipathway https://github.com/geneontology/unipathway A manually curated resource for the representation and annotation of metabolic pathways ^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$ UCR00513 Anne.Morgat@sib.swiss https://www.ebi.ac.uk/ols/ontologies/upa/terms?iri=http://purl.obolibrary.org/obo/UPA_$1 https://raw.githubusercontent.com/geneontology/unipathway/master/upa.obo UPa|unipathway False UPA UPA upa UNIPATHWAY UniPathway +upheno Unified Phenotype Ontology https://github.com/obophenotype/upheno The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology. vasilevs@ohsu.edu https://www.ebi.ac.uk/ols/ontologies/upheno/terms?iri=http://purl.obolibrary.org/obo/UPHENO_$1 https://github.com/obophenotype/upheno/blob/master/upheno.owl False UPHENO UPHENO upheno UPHENO +uspto United States Patent and Trademark Office The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement. ^(D|PP|R|T|H|X|AI)?\d+$ 4145692 https://identifiers.org/uspto:$1 False uspto uspto USPTO +validatordb ValidatorDB Database of validation results for ligands and non-standard residues in the Protein Data Bank. ^[A-Za-z0-9\/]+$ 2h6o https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1 False validatordb validatordb VALIDATORDB pdb +vandf Veterans Administration National Drug File 4019477 False VANDF +vario Variation Ontology http://variationontology.org The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level. ^\d+$ 0376 mauno.vihinen@med.lu.se https://identifiers.org/vario:$1 False VARIO vario vario VARIO vario VARIO +vbase2 Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse http://www.vbase2.org/ The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes. ^\w+$ humIGHV025 https://identifiers.org/vbase2:$1 False vbase2 vbase2 VBASE2 +vbrc Viral Bioinformatics Resource Center The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis. ^\d+$ 35742 https://identifiers.org/vbrc:$1 False vbrc vbrc VBRC +vectorbase Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens http://www.vectorbase.org/index.php VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis. ^\D{4}\d{6}(\-\D{2})?$ ISCW007415 https://identifiers.org/vectorbase:$1 False vectorbase vectorbase VECTORBASE +vega Vertebrate Genome Annotation Database https://vega.archive.ensembl.org/index.html OTTHUMG00000169812 VEGA False +vegbank VegBank VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. ^VB\.[A-Za-z][A-Za-z]\..*$ VB.Ob.3736.GRSM125 https://identifiers.org/vegbank:$1 False vegbank +vfb Virtual Fly Brain An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster. ^[0-9a-zA-Z]{8}$ 00000001 https://identifiers.org/vfb:$1 False vfb vfb +vfdb.gene VFDB Gene VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes. ^\w+$ VFG2154 https://identifiers.org/vfdb.gene:$1 False vfdb.gene vfdb.gene VFDB.GENE +vfdb.genus VFDB Genus VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus. ^\w+$ Chlamydia https://identifiers.org/vfdb.genus:$1 False vfdb.genus vfdb.genus VFDB.GENUS +vgnc Vertebrate Gene Nomenclature Committee http://vertebrate.genenames.org/data/gene-symbol-report/#!/ The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee. ^((VGNC|vgnc):)?\d{1,9}$ VGNC:3792 https://identifiers.org/vgnc:$1 False vgnc VGNC +vhog Vertebrate Homologous Organ Group Ontology 0000411 ftp://ftp.bgee.org/general/ontologies/vHOG.obo VHOG_RETIRED True VHOG VHOG VHOG +viaf Virtual International Authority File The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web. ^\d+$ 75121530 https://identifiers.org/viaf:$1 False viaf viaf +vido The Virus Infectious Disease Ontology https://github.com/infectious-disease-ontology-extensions/ido-virus The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc. johnbeverley2021@u.northwestern.edu https://www.ebi.ac.uk/ols/ontologies/vido/terms?iri=http://purl.obolibrary.org/obo/VIDO_$1 False VIDO vido +vipr Virus Pathogen Resource http://www.viprbrc.org/brc/home.do?decorator=vipr The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information. ^[A-Za-z 0-9]+$ BeAn 70563 https://identifiers.org/vipr:$1 False vipr vipr VIPR +viralzone ViralZone ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures. ^\d+$ 992 https://identifiers.org/viralzone:$1 False viralzone viralzone VIRALZONE +virsirna VIRsiRNA The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region. ^virsi\d+$ virsi1909 https://identifiers.org/virsirna:$1 False virsirna virsirna VIRSIRNA +vmc Variation Modelling Collaboration True +vmhgene VMH Gene The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. ^[0-9]+\.[0-9]+ 8639.1 https://identifiers.org/vmhgene:$1 False vmhgene +vmhmetabolite VMH metabolite The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. [a-zA-Z0-9_\(\_\)\[\]]+ h2o https://identifiers.org/vmhmetabolite:$1 False vmhmetabolite vmhmetabolite VMHMETABOLITE +vmhreaction VMH reaction The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease. [a-zA-Z0-9_\(\_\)\[\]]+ HEX1 https://identifiers.org/vmhreaction:$1 False vmhreaction vmhreaction VMHREACTION +vo Vaccine Ontology http://www.violinet.org/vaccineontology The Vaccine Ontology (VO) is a biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine annotation, integrate various vaccine data, and support computer-assisted reasoning. VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities. yongqunh@med.umich.edu https://www.ebi.ac.uk/ols/ontologies/vo/terms?iri=http://purl.obolibrary.org/obo/VO_$1 False VO VO vo VO +void Vocabulary of Interlinked Datasets http://vocab.deri.ie/void feature http://rdfs.org/ns/void#$1 False void +vsao Vertebrate Skeletal Anatomy Ontology https://www.nescent.org/phenoscape/Main_Page wasila.dahdul@usd.edu VSAO_RETIRED True VSAO VSAO VSAO +vsdb Veterinary Substances DataBase https://sitem.herts.ac.uk/aeru/vsdb 1868 https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm False +vt Vertebrate trait ontology https://github.com/AnimalGenome/vertebrate-trait-ontology An ontology of traits covering vertebrates ^\d{7}$ 0000685 caripark@iastate.edu https://www.ebi.ac.uk/ols/ontologies/vt/terms?iri=http://purl.obolibrary.org/obo/VT_$1 False VT VT vt VT +vto Vertebrate Taxonomy Ontology https://github.com/phenoscape/vertebrate-taxonomy-ontology Comprehensive hierarchy of extinct and extant vertebrate taxa. ^\d{7}$ 9008500 balhoff@renci.org https://www.ebi.ac.uk/ols/ontologies/vto/terms?iri=http://purl.obolibrary.org/obo/VTO_$1 False VTO VTO vto VTO +vuid Veterans Health Administration (VHA) unique identifier False +vz ViralZone http://viralzone.expasy.org/ 886 https://viralzone.expasy.org/$1 False +wb WormBase database of nematode biology http://www.wormbase.org/ WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities. ^WB[A-Z][a-z]+\d+$ WBGene00000001 https://identifiers.org/wb:$1 WB_REF False wb wb WB +wb.rnai WormBase RNAi WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes. ^WBRNAi\d{8}$ WBRNAi00086878 https://identifiers.org/wb.rnai:$1 False wb.rnai wb.rnai WB.RNAI +wbbt C. elegans Gross Anatomy Ontology https://github.com/obophenotype/c-elegans-gross-anatomy-ontology Ontology about the gross anatomy of the C. elegans ^\d{7}$ 0001290 raymond@caltech.edu https://www.ebi.ac.uk/ols/ontologies/wbbt/terms?iri=http://purl.obolibrary.org/obo/WBBT_$1 WBbt False WB-BT WBbt wbbt WBBT +wbls C. elegans development ontology https://github.com/obophenotype/c-elegans-development-ontology Ontology about the development and life stages of the C. elegans ^\d{7}$ 0000690 cgrove@caltech.edu https://www.ebi.ac.uk/ols/ontologies/wbls/terms?iri=http://purl.obolibrary.org/obo/WBLS_$1 WBls False WB-LS WBls wbls WBLS +wbphenotype C. elegans phenotype https://github.com/obophenotype/c-elegans-phenotype-ontology Ontology about C. elegans and other nematode phenotypes ^\d{7}$ 0000983 cgrove@caltech.edu https://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPHENOTYPE_$1 WBPhenotype False WB-PHENOTYPE WBPhenotype wbphenotype WBPhenotype +wgs84 WGS84 Geo Positioning https://www.w3.org/2003/01/geo/wgs84_pos http://www.w3.org/2003/01/geo/wgs84_pos#$1 False +wikidata Wikidata Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic. ^(Q|P)\d+$ Q2207226 https://identifiers.org/wikidata:$1 wd|WD_Entity False wikidata wikidata WD_Entity +wikidata.property Wikidata Property P4355 False WD_Prop +wikigenes WikiGenes WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process. ^\d+$ 3771877 https://identifiers.org/wikigenes:$1 False wikigenes wikigenes WIKIGENES +wikipathways WikiPathways http://www.wikipathways.org "WikiPathways is a resource providing an open and public collection of pathway maps created and curated by the community in a Wiki like style. +All content is under the Creative Commons Attribution 3.0 Unported license." WP\d{1,5}(\_r\d+)?$ WP732 https://identifiers.org/wikipathways:$1 False WIKIPATHWAYS wikipathways wikipathways WIKIPATHWAYS P2410 +wikipedia.en Wikipedia http://en.wikipedia.org/ Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay. ^[A-Za-z-0-9_]+$ SM_UB-81 https://identifiers.org/wikipedia.en:$1 wikipedia False wikipedia.en wikipedia.en WIKIPEDIA.EN +worfdb C. elegans ORFeome cloning project http://worfdb.dfci.harvard.edu/ WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends). ^\w+(\.\d+)? T01B6.1 https://identifiers.org/worfdb:$1 False worfdb worfdb WORFDB +wormbase WormBase https://wormbase.org C05G5/12462-12364 False WormBase WormBase P3860 +wormpep Wormpep Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project. ^CE\d{5}$ CE28239 https://identifiers.org/wormpep:$1 False wormpep wormpep WORMPEP +worms World Register of Marine Species The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts. ^\d+$ 146421 https://identifiers.org/worms:$1 False worms worms WORMS +xao Xenopus Anatomy Ontology http://www.xenbase.org/anatomy/xao.do?method=display XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis. ^\d{7}$ 0004486 esegerd3@gmail.com https://www.ebi.ac.uk/ols/ontologies/xao/terms?iri=http://purl.obolibrary.org/obo/XAO_$1 False XAO XAO xao XAO P4495 +xco Experimental condition ontology https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000 Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms. ^\d{7}$ 0000780 jrsmith@mcw.edu https://www.ebi.ac.uk/ols/ontologies/xco/terms?iri=http://purl.obolibrary.org/obo/XCO_$1 False XCO XCO xco XCO +xenbase Xenbase http://www.xenbase.org/ Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions. ^XB\-\w+\-\d+$ XB-GENE-922462 https://identifiers.org/xenbase:$1 False xenbase xenbase Xenbase Xenbase +xl Cross-linker reagents ontology http://www.psidev.info/groups/controlled-vocabularies A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. psidev-ms-vocab@lists.sourceforge.net https://www.ebi.ac.uk/ols/ontologies/xl/terms?iri=http://purl.obolibrary.org/obo/XL_$1 False xl XL +xlmod HUPO-PSI cross-linking and derivatization reagents controlled vocabulary http://www.psidev.info/groups/controlled-vocabularies A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. ^\d{5}$ 00050 gerhard.mayer@rub.de https://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_$1 False XLMOD XLMOD xlmod +xpo Xenopus Phenotype Ontology https://github.com/obophenotype/xenopus-phenotype-ontology XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis. ^\d+$ 0100002 esegerd3@gmail.com https://www.ebi.ac.uk/ols/ontologies/xpo/terms?iri=http://purl.obolibrary.org/obo/XPO_$1 False XPO XPO xpo +xsd XML Schema Definition http://www.w3.org/2001/XMLSchema http://www.w3.org/2001/XMLSchema#$1 False xsd +xuo XUO False +ydpm Yeast Deletion and the Mitochondrial Proteomics Project The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition. ^Y[A-Z]{2}\d+[CW]$ YAL001C https://identifiers.org/ydpm:$1 False ydpm ydpm YDPM +yeastintron Yeast Intron Database v4.3 The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]. ^[A-Z0-9]+$ SNR17A https://identifiers.org/yeastintron:$1 False yeastintron yeastintron YEASTINTRON +yetfasco YeTFasCo The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats. ^\w+\_\d+(\.\d+)?$ YOR172W_571.0 https://identifiers.org/yetfasco:$1 False yetfasco yetfasco YETFASCO +yid Yeast Intron Database v3 The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]. ^[A-Z0-9]+$ SNR17A https://identifiers.org/yid:$1 False yid yid YID +ymdb Yeast Metabolome Database ^YMDB\d+$ YMDB00001 http://www.ymdb.ca/compounds/$1 False +yrcpdr YRC PDR The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions. ^\d+$ 2673500 https://identifiers.org/yrcpdr:$1 False yrcpdr yrcpdr YRCPDR +zea Maize gross anatomy http://www.maizemap.org/ Leszek@missouri.edu True ZEA ZEA ZEA +zeco Zebrafish Experimental Conditions Ontology https://github.com/ybradford/zebrafish-experimental-conditions-ontology None ^\d{7}$ 0000171 ybradford@zfin.org https://www.ebi.ac.uk/ols/ontologies/zeco/terms?iri=http://purl.obolibrary.org/obo/ZECO_$1 False ZECO ZECO zeco ZECO +zfa Zebrafish anatomy and development ontology https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources A structured controlled vocabulary of the anatomy and development of the Zebrafish ^\d{7}$ 0005926 van_slyke@zfin.org https://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_$1 ZFA_RETIRED False ZFA ZFA zfa ZFA +zfin Zebrafish Information Network http://zfin.org/ ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN. ^ZDB\-\w+\-\d+\-\d+$ ZDB-GENE-041118-11 https://identifiers.org/zfin:$1 ZFIN False zfin zfin ZFIN ZFIN P3870 +zfs Zebrafish developmental stages ontology https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources Developmental stages of the Zebrafish ^\d{7}$ 0000050 van_slyke@zfin.org https://www.ebi.ac.uk/ols/ontologies/zfs/terms?iri=http://purl.obolibrary.org/obo/ZFS_$1 False ZFS ZFS zfs ZFS +zinc ZINC is not Commercial ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number. ^(ZINC)?\d+$ ZINC1084 https://identifiers.org/zinc:$1 False zinc zinc ZINC P2084 +zp Zebrafish Phenotype Ontology https://github.com/obophenotype/zebrafish-phenotype-ontology The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism. ^\d+$ 0019030 ybradford@zfin.org https://www.ebi.ac.uk/ols/ontologies/zp/terms?iri=http://purl.obolibrary.org/obo/ZP_$1 False ZP ZP zp ZP diff --git a/docs/_data/bioregistry.yml b/docs/_data/registry.yml similarity index 99% rename from docs/_data/bioregistry.yml rename to docs/_data/registry.yml index 6568e7c05..5cb8f6fe5 100644 --- a/docs/_data/bioregistry.yml +++ b/docs/_data/registry.yml @@ -327,7 +327,7 @@ prefix: aism - mappings: prefixcommons: ALLERGOME - uniprot: Allergome + uniprot.database: Allergome miriam: deprecated: false description: Allergome is a repository of data related to all IgE-binding compounds. @@ -347,7 +347,7 @@ is_identifiers: true is_obo: false prefix: ALLERGOME - uniprot: + uniprot.database: category: Protein family/group databases formatter: http://www.allergome.org/script/dettaglio.php?id_molecule=%s identifier: '160' @@ -677,7 +677,7 @@ prefix: apollo_sv - mappings: prefixcommons: ARACHNOSERVER - uniprot: ArachnoServer + uniprot.database: ArachnoServer miriam: deprecated: false description: ArachnoServer (www.arachnoserver.org) is a manually curated database @@ -698,7 +698,7 @@ is_identifiers: true is_obo: false prefix: ARACHNOSERVER - uniprot: + uniprot.database: category: Organism-specific databases formatter: http://www.arachnoserver.org/toxincard.html?id=%s identifier: '145' @@ -708,7 +708,7 @@ - homepage: https://www.araport.org/ mappings: ncbi: Araport - uniprot: Araport + uniprot.database: Araport name: Arabidopsis Information Portal ncbi: example: AT1G01010 @@ -716,7 +716,7 @@ name: Arabidopsis Information Portal prefix: Araport prefix: araport - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://bar.utoronto.ca/thalemine/portal.do?externalids=%s identifier: '221' @@ -1728,7 +1728,7 @@ prefix: BILA - mappings: prefixcommons: BINDINGDB - uniprot: BindingDB + uniprot.database: BindingDB miriam: deprecated: false description: BindingDB is the first public database of protein-small molecule @@ -1747,7 +1747,7 @@ is_identifiers: true is_obo: false prefix: BINDINGDB - uniprot: + uniprot.database: category: Chemistry databases formatter: https://www.bindingdb.org/uniprot/%u identifier: '127' @@ -1809,7 +1809,7 @@ mappings: go: BioCyc prefixcommons: BIOCYC - uniprot: BioCyc + uniprot.database: BioCyc miriam: deprecated: false description: BioCyc is a collection of Pathway/Genome Databases (PGDBs) which @@ -1829,7 +1829,7 @@ is_identifiers: true is_obo: false prefix: BIOCYC - uniprot: + uniprot.database: category: Enzyme and pathway databases formatter: https://biocyc.org/getid?id=%s identifier: '5' @@ -1838,7 +1838,7 @@ prefix: BioCyc - mappings: prefixcommons: BIOGRID - uniprot: BioGRID + uniprot.database: BioGRID miriam: deprecated: false description: BioGRID is a database of physical and genetic interactions in Saccharomyces @@ -1858,7 +1858,7 @@ is_identifiers: false is_obo: false prefix: BIOGRID - uniprot: + uniprot.database: category: Protein-protein interaction databases formatter: https://thebiogrid.org/%s identifier: '184' @@ -2164,7 +2164,7 @@ prefix: biosimulators sampleId: vcell prefix: biosimulators -- mapping: +- mappings: fairsharing: biodbcore-000989 miriam: deprecated: false @@ -2223,10 +2223,10 @@ is_identifiers: true is_obo: false prefix: BIOTOOLS -- bioportal: +- _comment: Part of the NeuroLex namespace now + bioportal: name: Biomedical Informatics Research Network Project Lexicon prefix: BIRNLEX - comment: Part of the NeuroLex namespace now mappings: bioportal: BIRNLEX name: Biomedical Informatics Research Network Lexicon @@ -2283,7 +2283,7 @@ prefix: BITTERDB.REC - mappings: fairsharing: FAIRsharing.p06nme - uniprot: BMRB + uniprot.database: BMRB miriam: deprecated: false description: BMRB collects, annotates, archives, and disseminates (worldwide in @@ -2299,7 +2299,7 @@ prefix: bmrb sampleId: '15000' prefix: bmrb - uniprot: + uniprot.database: category: 3D structure databases formatter: http://www.bmrb.wisc.edu/data_library/summary/protein.php?uniprot=%u identifier: '256' @@ -2358,7 +2358,7 @@ mappings: go: BRENDA prefixcommons: BRENDA - uniprot: BRENDA + uniprot.database: BRENDA miriam: deprecated: false description: BRENDA is a collection of enzyme functional data available to the @@ -2381,7 +2381,7 @@ is_identifiers: true is_obo: false prefix: BRENDA - uniprot: + uniprot.database: category: Enzyme and pathway databases formatter: https://www.brenda-enzymes.org/enzyme.php?ecno=%s&UniProtAcc=%u&OrganismID=%d identifier: '131' @@ -2414,7 +2414,7 @@ is_identifiers: true is_obo: false prefix: BROAD -- comment: part of Sequence Ontology (SO). See https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/master/Ontology_Files/subsets/biosapiens.obo +- _comment: part of Sequence Ontology (SO). See https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/master/Ontology_Files/subsets/biosapiens.obo name: Biosapiens prefix: bs - bioportal: @@ -2843,7 +2843,7 @@ mappings: go: CAZY prefixcommons: CAZY - uniprot: CAZy + uniprot.database: CAZy miriam: deprecated: false description: The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized @@ -2863,7 +2863,7 @@ is_identifiers: true is_obo: false prefix: CAZY - uniprot: + uniprot.database: category: Protein family/group databases formatter: http://www.cazy.org/fam/%s.html identifier: '136' @@ -2902,7 +2902,7 @@ prefix: ccdc - mappings: prefixcommons: CCDS - uniprot: CCDS + uniprot.database: CCDS miriam: deprecated: false description: The Consensus CDS (CCDS) project is a collaborative effort to identify @@ -2924,7 +2924,7 @@ is_identifiers: false is_obo: false prefix: CCDS - uniprot: + uniprot.database: category: Sequence databases formatter: https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=%s identifier: '187' @@ -2949,7 +2949,6 @@ sampleId: '0000003' n2t: prefix: cco - namespace.capitalized: true ols: contact: vladimir.n.mironov@gmail.com description: The Cell Cycle Ontology extends existing ontologies for cell cycle @@ -3022,7 +3021,7 @@ go: CDD ncbi: CDD prefixcommons: CDD - uniprot: CDD + uniprot.database: CDD miriam: deprecated: false description: The Conserved Domain Database (CDD) is a collection of multiple sequence @@ -3047,7 +3046,7 @@ is_identifiers: true is_obo: false prefix: CDD - uniprot: + uniprot.database: category: Family and domain databases formatter: https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=%s identifier: '214' @@ -3198,7 +3197,7 @@ go: CGD ncbi: CGD prefixcommons: CGD - uniprot: CGD + uniprot.database: CGD miriam: deprecated: false description: The Candida Genome Database (CGD) provides access to genomic sequence @@ -3225,7 +3224,7 @@ is_identifiers: true is_obo: false prefix: CGD - uniprot: + uniprot.database: category: Organism-specific databases formatter: http://www.candidagenome.org/cgi-bin/locus.pl?dbid=%s identifier: '126' @@ -3405,7 +3404,7 @@ property.label: ChEMBL ID - mappings: prefixcommons: CHEMBL.TARGET - uniprot: ChEMBL + uniprot.database: ChEMBL miriam: deprecated: false description: ChEMBL is a database of bioactive compounds, their quantitative properties @@ -3426,7 +3425,7 @@ is_identifiers: true is_obo: false prefix: CHEMBL.TARGET - uniprot: + uniprot.database: category: Chemistry databases formatter: https://www.ebi.ac.uk/chembldb/target/inspect/%s identifier: '174' @@ -4455,7 +4454,7 @@ version.iri: http://purl.obolibrary.org/obo/cob/2020-04-15/cob.owl ols_version_date_format: '%Y-%m-%d' prefix: cob -- comment: not really sure where the source is. this also links to a system called +- _comment: not really sure where the source is. this also links to a system called athena. I was not able to figure out what COHD stands for. homepage: https://github.com/MIT-LCP/mimic-omop name: MIMIC III Database @@ -4496,7 +4495,7 @@ mappings: go: ComplexPortal prefixcommons: COMPLEXPORTAL - uniprot: ComplexPortal + uniprot.database: ComplexPortal miriam: deprecated: false description: A database that describes manually curated macromolecular complexes @@ -4515,9 +4514,9 @@ is_identifiers: true is_obo: false prefix: COMPLEXPORTAL - synyonms: + synonyms: - ComplexPortal - uniprot: + uniprot.database: category: Protein-protein interaction databases formatter: https://www.ebi.ac.uk/complexportal/complex/%s identifier: '228' @@ -4574,7 +4573,7 @@ prefix: COMPULYEAST - mappings: prefixcommons: CONOSERVER - uniprot: ConoServer + uniprot.database: ConoServer miriam: deprecated: false description: ConoServer is a database specialized in the sequence and structures @@ -4594,7 +4593,7 @@ is_identifiers: true is_obo: false prefix: CONOSERVER - uniprot: + uniprot.database: category: Organism-specific databases formatter: http://www.conoserver.org/?page=card&table=protein&id=%s identifier: '156' @@ -4644,7 +4643,7 @@ mappings: go: CORUM prefixcommons: CORUM - uniprot: CORUM + uniprot.database: CORUM miriam: deprecated: false description: The CORUM database provides a resource of manually annotated protein @@ -4666,7 +4665,7 @@ is_identifiers: true is_obo: false prefix: CORUM - uniprot: + uniprot.database: category: Protein-protein interaction databases formatter: http://mips.helmholtz-muenchen.de/corum/#?uniprotID=%u identifier: '224' @@ -4724,9 +4723,9 @@ version.iri: http://purl.obolibrary.org/obo/covoc/releases/2020-08-28/covoc.owl ols_version_date_format: '%Y-%m-%d' prefix: covoc -- appears_in: +- _comment: Part of cell ontology but deprecated, see https://github.com/obophenotype/cell-ontology/issues/572 + appears_in: - cl - comment: Part of cell ontology but deprecated, see https://github.com/obophenotype/cell-ontology/issues/572 name: Cellular Phenotypes prefix: cp - mappings: @@ -5480,7 +5479,7 @@ go: dbSNP ncbi: dbSNP prefixcommons: dbSNP - uniprot: dbSNP + uniprot.database: dbSNP miriam: deprecated: false description: The dbSNP database is a repository for both single base nucleotide @@ -5504,7 +5503,7 @@ is_identifiers: false is_obo: false prefix: dbSNP - uniprot: + uniprot.database: category: Genetic variation databases formatter: https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=%s identifier: '13' @@ -5682,7 +5681,7 @@ prefix: DEGRADOME - mappings: prefixcommons: DEPOD - uniprot: DEPOD + uniprot.database: DEPOD miriam: deprecated: false description: The human DEPhOsphorylation Database (DEPOD) contains information @@ -5708,7 +5707,7 @@ is_obo: false prefix: DEPOD provides: hgnc.symbol - uniprot: + uniprot.database: category: PTM databases formatter: http://depod.bioss.uni-freiburg.de/showp.php?name=%s identifier: '190' @@ -5769,7 +5768,7 @@ go: dictyBase ncbi: dictyBase prefixcommons: dictyBase - uniprot: dictyBase + uniprot.database: dictyBase name: dictyBase ncbi: example: DDB0191090 @@ -5784,7 +5783,7 @@ prefix: dictyBase synonyms: - dictyBase - uniprot: + uniprot.database: category: Organism-specific databases comment: Replacement for DictyBase formatter: http://dictybase.org/db/cgi-bin/gene_page.pl?primary_id=%s @@ -5889,7 +5888,7 @@ prefix: DIDEO - mappings: prefixcommons: DIP - uniprot: DIP + uniprot.database: DIP miriam: deprecated: false description: The database of interacting protein (DIP) database stores experimentally @@ -5909,7 +5908,7 @@ is_identifiers: true is_obo: false prefix: DIP - uniprot: + uniprot.database: category: Protein-protein interaction databases formatter: https://dip.doe-mbi.ucla.edu/dip/Browse.cgi?ID=%s identifier: '16' @@ -5924,7 +5923,7 @@ property: P557 - mappings: prefixcommons: DISPROT - uniprot: DisProt + uniprot.database: DisProt miriam: deprecated: false description: DisProt is a database of intrinsically disordered proteins and protein @@ -5943,7 +5942,7 @@ is_identifiers: true is_obo: false prefix: DISPROT - uniprot: + uniprot.database: category: Family and domain databases formatter: https://disprot.org/%s identifier: '17' @@ -6359,7 +6358,7 @@ homepage: http://www.drugbank.ca mappings: prefixcommons: DrugBank - uniprot: DrugBank + uniprot.database: DrugBank miriam: deprecated: false description: The DrugBank database is a bioinformatics and chemoinformatics resource @@ -6383,7 +6382,7 @@ synonyms: - DrugBank - DRUGBANK_ID - uniprot: + uniprot.database: category: Chemistry databases formatter: https://www.drugbank.ca/drugs/%s identifier: '19' @@ -6441,12 +6440,12 @@ homepage: http://drugcentral.org mappings: biolink: DrugCentral - uniprot: DrugCentral + uniprot.database: DrugCentral name: Drug Central prefix: drugcentral synonyms: - Drug_Central - uniprot: + uniprot.database: category: Chemistry databases formatter: https://drugcentral.org/target/%u identifier: '239' @@ -6581,7 +6580,7 @@ mappings: go: EchoBASE prefixcommons: ECHOBASE - uniprot: EchoBASE + uniprot.database: EchoBASE miriam: deprecated: false description: EchoBASE is a database designed to contain and manipulate information @@ -6603,7 +6602,7 @@ is_identifiers: true is_obo: false prefix: ECHOBASE - uniprot: + uniprot.database: category: Organism-specific databases formatter: http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=%s identifier: '20' @@ -7062,7 +7061,7 @@ prefix: EGA.STUDY - mappings: prefixcommons: EGGNOG - uniprot: eggNOG + uniprot.database: eggNOG miriam: deprecated: false description: 'eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous @@ -7084,7 +7083,7 @@ is_identifiers: true is_obo: false prefix: EGGNOG - uniprot: + uniprot.database: category: Phylogenomic databases formatter: http://eggnogdb.embl.de/#/app/results?seqid=%u&target_nogs=%s identifier: '152' @@ -7167,7 +7166,7 @@ - RETIRED_EHDAA2 - mappings: prefixcommons: ELM - uniprot: ELM + uniprot.database: ELM miriam: deprecated: false description: Linear motifs are short, evolutionarily plastic components of regulatory @@ -7188,16 +7187,14 @@ is_identifiers: true is_obo: false prefix: ELM - uniprot: + uniprot.database: category: Protein-protein interaction databases formatter: http://elm.eu.org/instances.html?q=%u identifier: '223' link_is_explicit: 'true' name: The Eukaryotic Linear Motif resource for Functional Sites in Proteins prefix: ELM -- _download: ftp://ftp.hgu.mrc.ac.uk/pub/MouseAtlas/Anatomy/EMAP_combined.obo - _download_comment: New download link? probabl not right - bioportal: +- bioportal: name: Mouse gross anatomy and development, timed prefix: EMAPA example: '26753' @@ -7267,7 +7264,7 @@ the raw images used to build a 3D structure example: '10595' homepage: https://www.ebi.ac.uk/pdbe/emdb - mapping: + mappings: fairsharing: biodbcore-001140 name: Electron Microscopy Public Image Archive prefix: empiar @@ -7356,7 +7353,7 @@ go: ENSEMBL ncbi: ENSEMBL prefixcommons: ENSEMBL - uniprot: Ensembl + uniprot.database: Ensembl miriam: deprecated: false description: Ensembl is a joint project between EMBL - EBI and the Sanger Institute to @@ -7383,7 +7380,7 @@ prefix: ENSEMBL synonyms: - Ensembl - uniprot: + uniprot.database: category: Genome annotation databases formatter: https://www.ensembl.org/id/%s identifier: '23' @@ -7400,7 +7397,7 @@ property.label: Ensembl gene ID - mappings: prefixcommons: ENSEMBL.BACTERIA - uniprot: EnsemblBacteria + uniprot.database: EnsemblBacteria miriam: deprecated: false description: Ensembl Genomes consists of five sub-portals (for bacteria, protists, @@ -7421,7 +7418,7 @@ is_identifiers: true is_obo: false prefix: ENSEMBL.BACTERIA - uniprot: + uniprot.database: category: Genome annotation databases formatter: http://www.ensemblgenomes.org/id/%s identifier: '147' @@ -7437,7 +7434,7 @@ mappings: go: EnsemblFungi prefixcommons: ENSEMBL.FUNGI - uniprot: EnsemblFungi + uniprot.database: EnsemblFungi miriam: deprecated: false description: Ensembl Genomes consists of five sub-portals (for bacteria, protists, @@ -7457,7 +7454,7 @@ is_identifiers: true is_obo: false prefix: ENSEMBL.FUNGI - uniprot: + uniprot.database: category: Genome annotation databases formatter: http://www.ensemblgenomes.org/id/%s identifier: '148' @@ -7473,7 +7470,7 @@ mappings: go: EnsemblMetazoa prefixcommons: ENSEMBL.METAZOA - uniprot: EnsemblMetazoa + uniprot.database: EnsemblMetazoa miriam: deprecated: false description: Ensembl Genomes consists of five sub-portals (for bacteria, protists, @@ -7494,7 +7491,7 @@ is_identifiers: true is_obo: false prefix: ENSEMBL.METAZOA - uniprot: + uniprot.database: category: Genome annotation databases formatter: http://www.ensemblgenomes.org/id/%s identifier: '149' @@ -7641,7 +7638,7 @@ - mappings: ncbi: EPD prefixcommons: EPD - uniprot: EPD + uniprot.database: EPD miriam: deprecated: false description: The Eukaryotic Promoter Database (EPD) is an annotated non-redundant @@ -7671,7 +7668,7 @@ is_identifiers: true is_obo: false prefix: EPD - uniprot: + uniprot.database: category: Proteomic databases formatter: https://www.peptracker.com/epd/analytics/?protein_id=%u identifier: '205' @@ -8381,7 +8378,7 @@ go: FB ncbi: FLYBASE prefixcommons: FlyBase - uniprot: FlyBase + uniprot.database: FlyBase miriam: deprecated: false description: FlyBase is the database of the Drosophila Genome Projects and of @@ -8406,7 +8403,7 @@ synonyms: - FB - FlyBase - uniprot: + uniprot.database: category: Organism-specific databases comment: Replacement for DMAP formatter: http://flybase.org/reports/%s.html @@ -8964,8 +8961,8 @@ url: https://www.gbif.org/species/$1 wikidata: property: P846 -- name: Genetic Code - note: 'see comment here: https://github.com/obophenotype/ncbitaxon/issues/47' +- _comment: 'see comment here: https://github.com/obophenotype/ncbitaxon/issues/47' + name: Genetic Code prefix: gc references: - https://github.com/obophenotype/ncbitaxon/issues/47 @@ -9049,7 +9046,7 @@ prefix: gecko - mappings: prefixcommons: GENATLAS - uniprot: GenAtlas + uniprot.database: GenAtlas miriam: deprecated: false description: GenAtlas is a database containing information on human genes, markers @@ -9068,7 +9065,7 @@ is_identifiers: true is_obo: false prefix: GENATLAS - uniprot: + uniprot.database: category: Organism-specific databases formatter: http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=%s identifier: '27' @@ -9086,7 +9083,7 @@ fairsharing: FAIRsharing.9kahy4 go: GenBank prefixcommons: GenBank - uniprot: GenBank + uniprot.database: GenBank name: GenBank prefix: genbank prefixcommons: @@ -9094,7 +9091,7 @@ is_identifiers: false is_obo: false prefix: GenBank - uniprot: + uniprot.database: category: Sequence databases formatter: https://www.ncbi.nlm.nih.gov/nuccore/%s identifier: '28' @@ -9103,7 +9100,7 @@ url: https://www.ncbi.nlm.nih.gov/nucleotide/$1 - mappings: prefixcommons: GENECARDS - uniprot: GeneCards + uniprot.database: GeneCards miriam: deprecated: false description: The GeneCards human gene database stores gene related transcriptomic, @@ -9124,7 +9121,7 @@ is_identifiers: true is_obo: false prefix: GENECARDS - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://www.genecards.org/cgi-bin/carddisp.pl?gene=%s identifier: '30' @@ -9140,7 +9137,7 @@ go: GeneDB ncbi: GeneDB prefixcommons: GENEDB - uniprot: GeneDB + uniprot.database: GeneDB miriam: deprecated: false description: GeneDB is a genome database for prokaryotic and eukaryotic organisms @@ -9166,7 +9163,7 @@ is_identifiers: true is_obo: false prefix: GENEDB - uniprot: + uniprot.database: category: Genome annotation databases formatter: https://www.genedb.org/gene/%s identifier: '199' @@ -9222,7 +9219,7 @@ prefix: GENEPIO - mappings: prefixcommons: GENETREE - uniprot: GeneTree + uniprot.database: GeneTree miriam: deprecated: false description: Genetree displays the maximum likelihood phylogenetic (protein) trees @@ -9242,7 +9239,7 @@ is_identifiers: true is_obo: false prefix: GENETREE - uniprot: + uniprot.database: category: Phylogenomic databases formatter: http://www.ensemblgenomes.org/id-genetree/%s identifier: '162' @@ -9251,7 +9248,7 @@ prefix: GeneTree - mappings: prefixcommons: GENEWIKI - uniprot: GeneWiki + uniprot.database: GeneWiki miriam: deprecated: false description: The Gene Wiki is project which seeks to provide detailed information @@ -9272,7 +9269,7 @@ is_identifiers: true is_obo: false prefix: GENEWIKI - uniprot: + uniprot.database: category: Miscellaneous databases formatter: https://en.wikipedia.org/wiki/%s identifier: '180' @@ -9577,10 +9574,10 @@ - example: G24361QY homepage: https://glygen.org/glycan/ mappings: - uniprot: GlyGen + uniprot.database: GlyGen name: 'GlyGen: Computational and Informatics Resources for Glycoscience' prefix: glygen - uniprot: + uniprot.database: category: PTM databases formatter: https://glygen.org/protein/%u#glycosylation identifier: '254' @@ -9795,7 +9792,7 @@ go: GO ncbi: GO prefixcommons: GO - uniprot: GO + uniprot.database: GO miriam: deprecated: false description: The Gene Ontology project provides a controlled vocabulary to describe @@ -9845,7 +9842,7 @@ - gobpid - goccid - gomfid - uniprot: + uniprot.database: category: Ontologies formatter: https://www.ebi.ac.uk/QuickGO/term/%s identifier: '37' @@ -9889,7 +9886,6 @@ sampleId: '0000041' n2t: prefix: go.ref - namespace.capitalized: true prefix: go.ref prefixcommons: formatter: http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:$1 @@ -10044,7 +10040,7 @@ prefix: gorel - mappings: prefixcommons: GPCRDB - uniprot: GPCRDB + uniprot.database: GPCRDB miriam: deprecated: false description: The G protein-coupled receptor database (GPCRDB) collects, large @@ -10066,7 +10062,7 @@ is_identifiers: true is_obo: false prefix: GPCRDB - uniprot: + uniprot.database: category: Protein family/group databases formatter: https://gpcrdb.org/protein/%s/ identifier: '38' @@ -10432,10 +10428,10 @@ is_identifiers: true is_obo: false prefix: GTEX -- appears_in: - - mondo - comment: Identifiers appearing in MONDO don't match any of the resources apparent +- _comment: Identifiers appearing in MONDO don't match any of the resources apparent endpoints + appears_in: + - mondo example: AN0097748 homepage: https://www.ncbi.nlm.nih.gov/gtr/ name: Genetic Testing Registry @@ -10601,7 +10597,7 @@ mappings: go: HAMAP prefixcommons: HAMAP - uniprot: HAMAP + uniprot.database: HAMAP miriam: deprecated: false description: HAMAP is a system that identifies and semi-automatically annotates @@ -10622,7 +10618,7 @@ is_identifiers: true is_obo: false prefix: HAMAP - uniprot: + uniprot.database: category: Family and domain databases formatter: https://hamap.expasy.org/signature/%s identifier: '41' @@ -10805,7 +10801,7 @@ go: HUGO ncbi: HGNC prefixcommons: HGNC - uniprot: HGNC + uniprot.database: HGNC miriam: deprecated: false description: The HGNC (HUGO Gene Nomenclature Committee) provides an approved @@ -10832,7 +10828,7 @@ is_identifiers: false is_obo: false prefix: HGNC - uniprot: + uniprot.database: category: Organism-specific databases comment: Replacement for Genew formatter: https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/%s @@ -11023,7 +11019,7 @@ prefix: hog - mappings: prefixcommons: HOGENOM - uniprot: HOGENOM + uniprot.database: HOGENOM miriam: deprecated: false description: HOGENOM is a database of homologous genes from fully sequenced organisms @@ -11045,7 +11041,7 @@ is_identifiers: true is_obo: false prefix: HOGENOM - uniprot: + uniprot.database: category: Phylogenomic databases formatter: http://hogenom.univ-lyon1.fr/query_sequence?seq=%u identifier: '44' @@ -11232,7 +11228,7 @@ mappings: go: HPA prefixcommons: HPA - uniprot: HPA + uniprot.database: HPA miriam: deprecated: false description: The Human Protein Atlas (HPA) is a publicly available database with @@ -11253,7 +11249,7 @@ is_identifiers: true is_obo: false prefix: HPA - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://www.proteinatlas.org/%s identifier: '46' @@ -11486,7 +11482,7 @@ prefix: htn - mappings: prefixcommons: HUGE - uniprot: HUGE + uniprot.database: HUGE miriam: deprecated: false description: The Human Unidentified Gene-Encoded (HUGE) protein database contains results @@ -11507,7 +11503,7 @@ is_identifiers: true is_obo: false prefix: HUGE - uniprot: + uniprot.database: category: Organism-specific databases formatter: http://www.kazusa.or.jp/huge/gfpage/%s identifier: '49' @@ -11768,7 +11764,7 @@ - homepage: https://www.ideal-db.org mappings: prefixcommons: IDEAL - uniprot: IDEAL + uniprot.database: IDEAL miriam: deprecated: false description: IDEAL provides a collection of knowledge on experimentally verified @@ -11790,7 +11786,7 @@ is_identifiers: true is_obo: false prefix: IDEAL - uniprot: + uniprot.database: category: Family and domain databases formatter: http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=%s identifier: '251' @@ -11937,7 +11933,7 @@ is_obo: false prefix: IDOT url: https://biomodels.net/vocab/idot.rdf#$1 -- mapping: +- mappings: fairsharing: FAIRsharing.6wf1zw miriam: deprecated: false @@ -12159,9 +12155,9 @@ prefix: INCHIKEY wikidata: property: P235 -- example: fluticasone +- _comment: can not find a place to resolve to + example: fluticasone name: International Nonproprietary Names - note: can not find a place to resolve to prefix: inn synonyms: - INN_ID @@ -12293,7 +12289,7 @@ mappings: go: IntAct prefixcommons: INTACT - uniprot: IntAct + uniprot.database: IntAct miriam: deprecated: false description: IntAct provides a freely available, open source database system and @@ -12312,7 +12308,7 @@ is_identifiers: true is_obo: false prefix: INTACT - uniprot: + uniprot.database: category: Protein-protein interaction databases formatter: https://www.ebi.ac.uk/intact/interactors/id:%s* identifier: '51' @@ -12383,7 +12379,7 @@ go: InterPro ncbi: InterPro prefixcommons: INTERPRO - uniprot: InterPro + uniprot.database: InterPro miriam: deprecated: false description: InterPro is a database of protein families, domains and functional @@ -12411,7 +12407,7 @@ synonyms: - InterPro - IP - uniprot: + uniprot.database: category: Family and domain databases formatter: https://www.ebi.ac.uk/interpro/entry/%s identifier: '52' @@ -12468,7 +12464,6 @@ - deprecated: true example: 0000008 name: Insect Resistance Ontology - needs_curation: true prefix: iro url: https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1 - biolink: @@ -12884,7 +12879,7 @@ n2t: prefix: kaggle prefix: kaggle -- comments: KEGG prefix has been split into several others +- _comment: KEGG prefix has been split into several others deprecated: true go: homepage: http://www.genome.ad.jp/kegg/ @@ -12893,7 +12888,7 @@ mappings: go: KEGG prefixcommons: KEGG - uniprot: KEGG + uniprot.database: KEGG miriam: deprecated: false description: Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource @@ -12917,7 +12912,7 @@ prefix: KEGG synonyms: - KEGG - uniprot: + uniprot.database: category: Genome annotation databases formatter: https://www.genome.jp/dbget-bin/www_bget?%s identifier: '53' @@ -13536,8 +13531,7 @@ is_identifiers: true is_obo: false prefix: LINCS.PROTEIN -- id: '00000546' - mappings: +- mappings: prefixcommons: LINCS.SMALLMOLECULE miriam: deprecated: false @@ -13822,7 +13816,7 @@ - mappings: fairsharing: FAIRsharing.LYsiMd prefixcommons: MASSIVE - uniprot: MassIVE + uniprot.database: MassIVE miriam: deprecated: false description: MassIVE is a community resource developed by the NIH-funded Center @@ -13842,7 +13836,7 @@ is_identifiers: true is_obo: false prefix: MASSIVE - uniprot: + uniprot.database: category: Proteomic databases formatter: https://massive.ucsd.edu/ProteoSAFe/protein_explorer.jsp?libraries=2&protein_name=%u identifier: '241' @@ -13868,7 +13862,7 @@ is_identifiers: false is_obo: true prefix: MAT -- appearsIn: +- appears_in: - complexportal example: MULT_4_VAR1_bovine homepage: http://matrixdb.univ-lyon1.fr/ @@ -14097,7 +14091,7 @@ mappings: go: MEROPS prefixcommons: MEROPS - uniprot: MEROPS + uniprot.database: MEROPS miriam: deprecated: false description: The MEROPS database is an information resource for peptidases (also @@ -14117,7 +14111,7 @@ is_identifiers: true is_obo: false prefix: MEROPS - uniprot: + uniprot.database: category: Protein family/group databases formatter: https://www.ebi.ac.uk/merops/cgi-bin/pepsum?mid=%s identifier: '59' @@ -14644,7 +14638,7 @@ go: MGI ncbi: MGI prefixcommons: MGI - uniprot: MGI + uniprot.database: MGI miriam: deprecated: false description: The Mouse Genome Database (MGD) project includes data on gene characterization, @@ -14658,7 +14652,6 @@ sampleId: '2442292' n2t: prefix: mgi - namespace.capitalized: true ncbi: example: MGI:1894891 homepage: http://www.informatics.jax.org/ @@ -14673,9 +14666,9 @@ synonyms: - MGI - MGD - uniprot: + uniprot.database: + _comment: Replacement for MGD category: Organism-specific databases - comment: Replacement for MGD formatter: http://www.informatics.jax.org/marker/%s identifier: '60' link_is_explicit: 'true' @@ -14779,7 +14772,7 @@ prefix: MI synonyms: - PSI-MI -- comment: same as MAT +- _comment: same as MAT name: Minimal Information About Anatomy ontology prefix: miaa references: @@ -14921,11 +14914,11 @@ is_identifiers: true is_obo: false prefix: MICROSPORIDIA -- bioportal: +- _comment: OMIMPS and PS should probably be split to their own entry called OMIM + Phenotypic Series + bioportal: name: Molecular Interaction Map prefix: MIM - comment: OMIMPS and PS should probably be split to their own entry called OMIM Phenotypic - Series go: formatter: https://omim.org/entry/$1 homepage: https://omim.org/ @@ -14938,7 +14931,7 @@ go: OMIM ncbi: MIM prefixcommons: OMIM - uniprot: MIM + uniprot.database: MIM miriam: deprecated: false description: Online Mendelian Inheritance in Man is a catalog of human genes and @@ -14966,7 +14959,7 @@ - OMIM - OMIMPS - PS - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://www.omim.org/entry/%s identifier: '62' @@ -15033,7 +15026,7 @@ prefix: minid.test - mappings: prefixcommons: MINT - uniprot: MINT + uniprot.database: MINT miriam: deprecated: false description: The Molecular INTeraction database (MINT) stores, in a structured @@ -15054,7 +15047,7 @@ is_identifiers: true is_obo: false prefix: MINT - uniprot: + uniprot.database: category: Protein-protein interaction databases formatter: https://mint.bio.uniroma2.it/cgi-bin/protein.py?id=%u identifier: '158' @@ -15099,7 +15092,6 @@ sampleId: '00100037' n2t: prefix: mir - namespace.capitalized: true prefix: mir prefixcommons: formatter: http://identifiers.org/mir/$1 @@ -15225,7 +15217,7 @@ is_identifiers: true is_obo: false prefix: MIRIAM.COLLECTION -- comment: yo dawg i heard you like registries... +- _comment: yo dawg i heard you like registries... mappings: prefixcommons: MIRIAM.RESOURCE miriam: @@ -15573,7 +15565,7 @@ - homepage: http://mobidb.bio.unipd.it mappings: prefixcommons: MOBIDB - uniprot: MobiDB + uniprot.database: MobiDB miriam: deprecated: false description: MobiDB is a database of protein disorder and mobility annotations. @@ -15591,7 +15583,7 @@ is_identifiers: true is_obo: false prefix: MOBIDB - uniprot: + uniprot.database: category: Family and domain databases formatter: https://mobidb.bio.unipd.it/entries/%u identifier: '183' @@ -16306,7 +16298,7 @@ is_identifiers: true is_obo: false prefix: MZSPEC -- comment: The nomenclature used for named reactions in text mining software from +- _comment: The nomenclature used for named reactions in text mining software from NextMove name: NameRXN prefix: namerxn @@ -16985,7 +16977,7 @@ prefix: NEXTDB - mappings: prefixcommons: NEXTPROT - uniprot: neXtProt + uniprot.database: neXtProt miriam: deprecated: false description: "neXtProt is a resource on human proteins, and includes information\ @@ -17007,7 +16999,7 @@ prefix: NEXTPROT synonyms: - NXP - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://www.nextprot.org/entry/%s identifier: '161' @@ -17497,7 +17489,6 @@ sampleId: OBI_0000070 n2t: prefix: obi - namespace.capitalized: true obofoundry: contact: bpeters@lji.org contact.label: Bjoern Peters @@ -18681,7 +18672,7 @@ prefix: ornaseq - mappings: prefixcommons: Orphanet - uniprot: Orphanet + uniprot.database: Orphanet miriam: deprecated: false description: "Orphanet is a reference portal for information on rare diseases\ @@ -18702,7 +18693,7 @@ is_identifiers: false is_obo: false prefix: Orphanet - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=%s identifier: '68' @@ -18802,7 +18793,7 @@ prefix: orth - mappings: prefixcommons: ORTHODB - uniprot: OrthoDB + uniprot.database: OrthoDB miriam: deprecated: false description: OrthoDB presents a catalog of eukaryotic orthologous protein-coding @@ -18826,7 +18817,7 @@ is_identifiers: true is_obo: false prefix: ORTHODB - uniprot: + uniprot.database: category: Phylogenomic databases formatter: https://www.orthodb.org/?query=%u identifier: '143' @@ -19080,7 +19071,7 @@ workflow. It makes links to the Proteomics Exchange when possible. example: FxnI151FMs homepage: https://panoramaweb.org - mapping: + mappings: fairsharing: FAIRsharing.uBpQ1q name: Panorama Public prefix: panorama @@ -19223,7 +19214,7 @@ url: https://pathbank.org/view/$1 - mappings: prefixcommons: PATHWAYCOMMONS - uniprot: PathwayCommons + uniprot.database: PathwayCommons miriam: deprecated: false description: Pathway Commons is a convenient point of access to biological pathway @@ -19245,7 +19236,7 @@ is_identifiers: true is_obo: false prefix: PATHWAYCOMMONS - uniprot: + uniprot.database: category: Enzyme and pathway databases formatter: http://apps.pathwaycommons.org/search?q=%u identifier: '253' @@ -19423,7 +19414,7 @@ go: PDB ncbi: PDB prefixcommons: PDB - uniprot: PDB + uniprot.database: PDB miriam: deprecated: false description: The Protein Data Bank is the single worldwide archive of structural @@ -19449,7 +19440,7 @@ prefix: PDB synonyms: - wwpdb - uniprot: + uniprot.database: category: 3D structure databases formatter: https://www.ebi.ac.uk/pdbe-srv/view/entry/%s identifier: '70' @@ -19666,7 +19657,7 @@ prefix: peff - mappings: prefixcommons: PEPTIDEATLAS - uniprot: PeptideAtlas + uniprot.database: PeptideAtlas miriam: deprecated: false description: The PeptideAtlas Project provides a publicly accessible database @@ -19686,7 +19677,7 @@ is_identifiers: true is_obo: false prefix: PEPTIDEATLAS - uniprot: + uniprot.database: category: Proteomic databases formatter: https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Search?action=GO&search_key=%s identifier: '71' @@ -19708,7 +19699,7 @@ prefix: peptideatlas.dataset - mappings: prefixcommons: PEROXIBASE - uniprot: PeroxiBase + uniprot.database: PeroxiBase miriam: deprecated: false description: Peroxibase provides access to peroxidase sequences from all kingdoms @@ -19728,7 +19719,7 @@ is_identifiers: true is_obo: false prefix: PEROXIBASE - uniprot: + uniprot.database: category: Protein family/group databases formatter: http://peroxibase.toulouse.inra.fr/display_perox/view_perox/%s identifier: '72' @@ -19749,7 +19740,7 @@ go: Pfam ncbi: PFAM prefixcommons: PFAM - uniprot: Pfam + uniprot.database: Pfam miriam: deprecated: false description: The Pfam database contains information about protein domains and @@ -19776,7 +19767,7 @@ prefix: PFAM synonyms: - PF - uniprot: + uniprot.database: category: Family and domain databases formatter: https://pfam.xfam.org/family/%s identifier: '73' @@ -20100,7 +20091,7 @@ prefix: PHOSPHOSITE.RESIDUE - mappings: prefixcommons: PHYLOMEDB - uniprot: PhylomeDB + uniprot.database: PhylomeDB miriam: deprecated: false description: PhylomeDB is a database of complete phylomes derived for different @@ -20120,7 +20111,7 @@ is_identifiers: true is_obo: false prefix: PHYLOMEDB - uniprot: + uniprot.database: category: Phylogenomic databases formatter: http://phylomedb.org/?q=search_tree&seqid=%s identifier: '144' @@ -20272,7 +20263,7 @@ mappings: go: PIRSF prefixcommons: PIRSF - uniprot: PIRSF + uniprot.database: PIRSF miriam: deprecated: false description: The PIR SuperFamily concept is being used as a guiding principle @@ -20292,7 +20283,7 @@ is_identifiers: true is_obo: false prefix: PIRSF - uniprot: + uniprot.database: category: Family and domain databases formatter: https://proteininformationresource.org/cgi-bin/ipcSF?id=%s identifier: '79' @@ -20683,7 +20674,7 @@ go: PomBase ncbi: PomBase prefixcommons: PomBase - uniprot: PomBase + uniprot.database: PomBase miriam: deprecated: false description: PomBase is a model organism database established to provide access @@ -20711,7 +20702,7 @@ prefix: PomBase synonyms: - PomBase - uniprot: + uniprot.database: category: Organism-specific databases comment: Replacement for GeneDB_Spombe formatter: https://www.pombase.org/spombe/result/%s @@ -20813,7 +20804,7 @@ bioportal: PR go: PR prefixcommons: PR - uniprot: PRO + uniprot.database: PRO miriam: deprecated: false description: The PRotein Ontology (PRO) has been designed to describe the relationships @@ -20855,7 +20846,7 @@ synonyms: - PR - PRO - uniprot: + uniprot.database: category: Miscellaneous databases formatter: https://proconsortium.org/app/entry/%s identifier: '181' @@ -20868,7 +20859,7 @@ - mappings: fairsharing: FAIRsharing.e1byny prefixcommons: PRIDE - uniprot: PRIDE + uniprot.database: PRIDE miriam: deprecated: false description: The PRIDE PRoteomics IDEntifications database is a centralized, standards @@ -20899,7 +20890,7 @@ is_identifiers: true is_obo: false prefix: PRIDE - uniprot: + uniprot.database: category: Proteomic databases formatter: https://www.ebi.ac.uk/pride/searchSummary.do?queryTypeSelected=identification%20accession%20number&identificationAccessionNumber=%s identifier: '130' @@ -20935,7 +20926,7 @@ mappings: go: PRINTS prefixcommons: PRINTS - uniprot: PRINTS + uniprot.database: PRINTS miriam: deprecated: false description: PRINTS is a compendium of protein fingerprints. A fingerprint is @@ -20959,7 +20950,7 @@ is_identifiers: true is_obo: false prefix: PRINTS - uniprot: + uniprot.database: category: Family and domain databases comment: Replacement for PRINT formatter: http://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&prints_accn=%s @@ -21053,7 +21044,7 @@ mappings: go: Prosite prefixcommons: PROSITE - uniprot: PROSITE + uniprot.database: PROSITE miriam: deprecated: false description: PROSITE consists of documentation entries describing protein domains, @@ -21073,7 +21064,7 @@ is_identifiers: true is_obo: false prefix: PROSITE - uniprot: + uniprot.database: category: Family and domain databases formatter: https://prosite.expasy.org/doc/%s identifier: '84' @@ -21726,8 +21717,7 @@ is_obo: false prefix: rdfs url: http://www.w3.org/2000/01/rdf-schema#$1 -- _download: http://ratmine.mcw.edu/ontology/disease/RDO.obo - _download_comment: Problem with security certificate +- download: https://ratmine.mcw.edu/ontology/disease/RDO.obo name: RGD Disease_Ontology prefix: rdo - example: R-BTA-418592 @@ -21742,7 +21732,7 @@ mappings: go: Reactome prefixcommons: REACT - uniprot: Reactome + uniprot.database: Reactome miriam: deprecated: false description: The Reactome project is a collaboration to develop a curated resource @@ -21764,7 +21754,7 @@ synonyms: - RE - REACT - uniprot: + uniprot.database: category: Enzyme and pathway databases comment: Replacement for GK formatter: https://www.reactome.org/PathwayBrowser/#%s&FLG=%u @@ -21791,7 +21781,7 @@ mappings: go: REBASE prefixcommons: REBASE - uniprot: REBASE + uniprot.database: REBASE miriam: deprecated: false description: REBASE is a comprehensive database of information about restriction @@ -21813,7 +21803,7 @@ is_identifiers: true is_obo: false prefix: REBASE - uniprot: + uniprot.database: category: Protein family/group databases formatter: http://rebase.neb.com/rebase/enz/%s.html identifier: '89' @@ -21832,7 +21822,7 @@ mappings: go: RefSeq prefixcommons: RefSeq - uniprot: RefSeq + uniprot.database: RefSeq miriam: deprecated: false description: The Reference Sequence (RefSeq) collection aims to provide a comprehensive, @@ -21855,7 +21845,7 @@ prefix: RefSeq synonyms: - REFSEQ_PROT - uniprot: + uniprot.database: category: Sequence databases formatter: https://www.ncbi.nlm.nih.gov/protein/%s identifier: '117' @@ -22056,7 +22046,7 @@ go: RGD ncbi: RGD prefixcommons: RGD - uniprot: RGD + uniprot.database: RGD miriam: deprecated: false description: Rat Genome Database seeks to collect, consolidate, and integrate @@ -22084,7 +22074,7 @@ prefix: RGD synonyms: - RGD - uniprot: + uniprot.database: category: Organism-specific databases formatter: http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=%s identifier: '91' @@ -22479,7 +22469,7 @@ property: P3590 - mappings: prefixcommons: ROUGE - uniprot: Rouge + uniprot.database: Rouge miriam: deprecated: false description: The Rouge protein database contains results from sequence analysis @@ -22499,7 +22489,7 @@ is_identifiers: true is_obo: false prefix: ROUGE - uniprot: + uniprot.database: category: Organism-specific databases formatter: http://www.kazusa.or.jp/rouge/gfpage/%s identifier: '92' @@ -22529,7 +22519,6 @@ n2t: prefix: rrid name: Research Resource Identification - namespace.capitalized: true prefix: rrid prefixcommons: formatter: http://identifiers.org/rrid/$1 @@ -22749,9 +22738,9 @@ prefix: sael references: - https://pubmed.ncbi.nlm.nih.gov/18629134/ -- appears_in: +- _comment: spider stuff! + appears_in: - efo - comment: spider stuff! example: '037727' name: Salk Institute for Biological Studies Accession prefix: salk @@ -22780,7 +22769,7 @@ - http://www.ontobee.org/ontology/SAO - mappings: prefixcommons: SASBDB - uniprot: SASBDB + uniprot.database: SASBDB miriam: deprecated: false description: Small Angle Scattering Biological Data Bank (SASBDB) is a curated @@ -22805,7 +22794,7 @@ is_identifiers: true is_obo: false prefix: SASBDB - uniprot: + uniprot.database: category: 3D structure databases formatter: https://www.sasbdb.org/uniprot/%u/ identifier: '258' @@ -23095,7 +23084,7 @@ go: SGD ncbi: SGD prefixcommons: SGD - uniprot: SGD + uniprot.database: SGD miriam: deprecated: false description: The Saccharomyces Genome Database (SGD) project collects information @@ -23121,7 +23110,7 @@ is_identifiers: false is_obo: false prefix: SGD - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://www.yeastgenome.org/locus/%s identifier: '95' @@ -23305,7 +23294,7 @@ prefix: SIGNALING-GATEWAY - example: SIGNOR-C41 mappings: - uniprot: SIGNOR + uniprot.database: SIGNOR miriam: deprecated: false description: SIGNOR, the SIGnaling Network Open Resource, organizes and stores @@ -23320,7 +23309,7 @@ prefix: signor synonyms: - SIGNOR - uniprot: + uniprot.database: category: Enzyme and pathway databases formatter: https://signor.uniroma2.it/relation_result.php?id=%u identifier: '206' @@ -23420,7 +23409,6 @@ pattern: ^SLM:\d+$ prefix: slm sampleId: 000048885 - namespace.capitalized: true prefix: slm - go: formatter: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=$1 @@ -23430,7 +23418,7 @@ mappings: go: SMART prefixcommons: SMART - uniprot: SMART + uniprot.database: SMART miriam: deprecated: false description: The Simple Modular Architecture Research Tool (SMART) is an online @@ -23450,7 +23438,7 @@ is_identifiers: true is_obo: false prefix: SMART - uniprot: + uniprot.database: category: Family and domain databases formatter: http://smart.embl.de/smart/do_annotation.pl?DOMAIN=%s identifier: '97' @@ -23663,7 +23651,7 @@ is_identifiers: true is_obo: false prefix: SOYBASE -- comment: see also snap +- _comment: see also snap name: Span prefix: span - bioportal: @@ -23917,7 +23905,7 @@ prefix: STOREDB - mappings: prefixcommons: STRING - uniprot: STRING + uniprot.database: STRING miriam: deprecated: false description: "STRING (Search Tool for Retrieval of Interacting Genes/Proteins)\ @@ -23943,7 +23931,7 @@ is_identifiers: true is_obo: false prefix: STRING - uniprot: + uniprot.database: category: Protein-protein interaction databases formatter: https://string-db.org/network/%s identifier: '141' @@ -24027,7 +24015,7 @@ prefix: SUGARBIND - mappings: prefixcommons: SUPFAM - uniprot: SUPFAM + uniprot.database: SUPFAM miriam: deprecated: false description: SUPERFAMILY provides structural, functional and evolutionary information @@ -24048,7 +24036,7 @@ is_identifiers: true is_obo: false prefix: SUPFAM - uniprot: + uniprot.database: category: Family and domain databases formatter: http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=%s identifier: '155' @@ -24429,7 +24417,7 @@ mappings: go: TC prefixcommons: TCDB - uniprot: TCDB + uniprot.database: TCDB miriam: deprecated: false description: The database details a comprehensive IUBMB approved classification @@ -24452,7 +24440,7 @@ prefix: TCDB synonyms: - TC - uniprot: + uniprot.database: category: Protein family/group databases formatter: http://www.tcdb.org/search/result.php?tc=%s identifier: '135' @@ -24802,7 +24790,7 @@ prefix: TREEBASE - mappings: prefixcommons: TREEFAM - uniprot: TreeFam + uniprot.database: TreeFam miriam: deprecated: false description: TreeFam is a database of phylogenetic trees of gene families found @@ -24823,7 +24811,7 @@ is_identifiers: true is_obo: false prefix: TREEFAM - uniprot: + uniprot.database: category: Phylogenomic databases formatter: http://www.treefam.org/family/%s identifier: '185' @@ -25088,7 +25076,7 @@ is_identifiers: true is_obo: false prefix: UBIO.NAMEBANK -- comment: All of these are typedefs in uberon now +- _comment: All of these are typedefs in uberon now deprecated: true name: Uberon Property prefix: ubprop @@ -25096,7 +25084,7 @@ homepage: https://genome.ucsc.edu/ mappings: prefixcommons: UCSC - uniprot: UCSC + uniprot.database: UCSC name: UCSC Genome Browser prefix: ucsc prefixcommons: @@ -25104,7 +25092,7 @@ is_identifiers: false is_obo: false prefix: UCSC - uniprot: + uniprot.database: category: Genome annotation databases formatter: https://genome.ucsc.edu/cgi-bin/hgLinkIn?resource=uniprot&id=%u identifier: '139' @@ -25742,7 +25730,7 @@ bioportal: UPA go: UniPathway prefixcommons: UNIPATHWAY - uniprot: UniPathway + uniprot.database: UniPathway obofoundry: contact: Anne.Morgat@sib.swiss contact.label: Anne Morgat @@ -25773,7 +25761,7 @@ synonyms: - UPa - unipathway - uniprot: + uniprot.database: category: Enzyme and pathway databases formatter: http://www.unipathway.org?upid=%s&entryac=%u identifier: '170' @@ -26089,7 +26077,7 @@ prefix: VFDB.GENUS - mappings: ncbi: VGNC - uniprot: VGNC + uniprot.database: VGNC miriam: deprecated: false description: The Vertebrate Gene Nomenclature Committee (VGNC) is an extension @@ -26108,7 +26096,7 @@ name: Vertebrate Gene Nomenclature Committee prefix: VGNC prefix: vgnc - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/%s identifier: '226' @@ -26839,7 +26827,7 @@ go: WB_REF ncbi: WormBase prefixcommons: WormBase - uniprot: WormBase + uniprot.database: WormBase name: WormBase ncbi: example: R13H7 @@ -26852,7 +26840,7 @@ is_identifiers: false is_obo: false prefix: WormBase - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://wormbase.org/db/seq/protein?name=%s;class=CDS identifier: '110' @@ -26981,7 +26969,7 @@ go: Xenbase ncbi: Xenbase prefixcommons: Xenbase - uniprot: Xenbase + uniprot.database: Xenbase miriam: deprecated: false description: Xenbase is the model organism database for Xenopus laevis and X. @@ -27007,7 +26995,7 @@ is_identifiers: false is_obo: false prefix: Xenbase - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://www.xenbase.org/gene/showgene.do?method=display&geneId=%s identifier: '129' @@ -27321,7 +27309,7 @@ go: ZFIN ncbi: ZFIN prefixcommons: ZFIN - uniprot: ZFIN + uniprot.database: ZFIN miriam: deprecated: false description: ZFIN serves as the zebrafish model organism database. This collection @@ -27347,7 +27335,7 @@ prefix: ZFIN synonyms: - ZFIN - uniprot: + uniprot.database: category: Organism-specific databases formatter: https://zfin.org/%s identifier: '113' diff --git a/setup.cfg b/setup.cfg index 5161ecbe7..b7373a27a 100644 --- a/setup.cfg +++ b/setup.cfg @@ -55,6 +55,7 @@ install_requires = tabulate beautifulsoup4 defusedxml + rdflib zip_safe = false include_package_data = True diff --git a/src/bioregistry/app/templates/meta/download.html b/src/bioregistry/app/templates/meta/download.html index f594ef8a5..aae1da8b8 100644 --- a/src/bioregistry/app/templates/meta/download.html +++ b/src/bioregistry/app/templates/meta/download.html @@ -25,7 +25,11 @@

Registry

(reference file)
  • - YAML + YAML + (auto-generated by GitHub Actions) +
    • +
  • + TSV (auto-generated by GitHub Actions)
    • @@ -44,6 +48,14 @@

    Metaregistry

    JSON (reference file) +
  • + YAML + (auto-generated by GitHub Actions) +
    • +
  • + TSV + (auto-generated by GitHub Actions) +

    • The entirety of the metaregistry is manually curated and is available under the @@ -59,12 +71,44 @@

    Collections

    JSON (reference file) +
  • + YAML + (auto-generated by GitHub Actions) +
    • +
  • + TSV + (auto-generated by GitHub Actions) +

    • The entirety of the collections is manually curated and is available under the CC0 1.0 Universal License.

    +

    RDF

    +

    + The combine registry, metaregistry, and collections can be downloaded as RDF in the following formats: +

    + +

    + The manually curated portions of these data are available under the + + CC0 1.0 Universal License. Aggregated data are + redistributed under their original licenses. +

    Derived and Related Resources

    Bioregistry Regular Expression Report

    @@ -76,8 +120,8 @@

    Bioregistry Regular Expression Report

    Bioregistry Knowledge Graph

    - There is preliminary work in generating a knowledge graph around the information in the Bioregistry, including - the relations between resources, providers, and registries. It can be viewed on the + Related to the RDF dump, there is preliminary work in generating a knowledge graph around the information in the + Bioregistry, including the relations between resources, providers, and registries. It can be viewed on the Network Data Exchange (NDEx).

    diff --git a/src/bioregistry/cli.py b/src/bioregistry/cli.py index 32b3f9fc3..f548279ae 100644 --- a/src/bioregistry/cli.py +++ b/src/bioregistry/cli.py @@ -2,15 +2,12 @@ """Command line interface for the bioregistry.""" -import os - import click -import yaml from more_click import make_web_command from .align.cli import align from .compare import compare -from .constants import DOCS_DATA +from .export.cli import export from .external.cli import download from .generate_warnings_file import warnings from .lint import lint @@ -28,25 +25,10 @@ def main(): main.add_command(lint) main.add_command(compare) main.add_command(warnings) +main.add_command(export) main.add_command(make_web_command('bioregistry.app.wsgi:app')) -@main.command() -def copy(): - """Copy the source Bioregistry to the docs folder.""" - from .utils import read_registry - registry = read_registry() - ov = [ - { - 'prefix': prefix, - **data, - } - for prefix, data in registry.items() - ] - with open(os.path.join(DOCS_DATA, 'bioregistry.yml'), 'w') as file: - yaml.dump(ov, file) - - @main.command() def versions(): """Print the versions.""" @@ -72,7 +54,7 @@ def update(ctx: click.Context): ctx.invoke(download) ctx.invoke(align) ctx.invoke(lint) - ctx.invoke(copy) + ctx.invoke(export) ctx.invoke(compare) ctx.invoke(curation) ctx.invoke(warnings) diff --git a/src/bioregistry/export/__init__.py b/src/bioregistry/export/__init__.py new file mode 100644 index 000000000..3c66481e5 --- /dev/null +++ b/src/bioregistry/export/__init__.py @@ -0,0 +1,3 @@ +# -*- coding: utf-8 -*- + +"""Exports for the Bioregistry.""" diff --git a/src/bioregistry/export/__main__.py b/src/bioregistry/export/__main__.py new file mode 100644 index 000000000..95ae72f44 --- /dev/null +++ b/src/bioregistry/export/__main__.py @@ -0,0 +1,8 @@ +# -*- coding: utf-8 -*- + +"""Export the Bioregistry.""" + +from .cli import export + +if __name__ == '__main__': + export() diff --git a/src/bioregistry/export/cli.py b/src/bioregistry/export/cli.py new file mode 100644 index 000000000..2221a671d --- /dev/null +++ b/src/bioregistry/export/cli.py @@ -0,0 +1,22 @@ +# -*- coding: utf-8 -*- + +"""Export the Bioregistry.""" + +import click + +from .rdf_export import export_rdf +from .tsv_export import export_tsv +from .yaml_export import export_yaml + + +@click.command() +@click.pass_context +def export(ctx: click.Context): + """Export the Bioregistry.""" + ctx.invoke(export_rdf) + ctx.invoke(export_tsv) + ctx.invoke(export_yaml) + + +if __name__ == '__main__': + export() diff --git a/src/bioregistry/export/rdf_export.py b/src/bioregistry/export/rdf_export.py new file mode 100644 index 000000000..f0719e5da --- /dev/null +++ b/src/bioregistry/export/rdf_export.py @@ -0,0 +1,201 @@ +# -*- coding: utf-8 -*- + +"""Export the Bioregistry to RDF.""" + +import os +from io import BytesIO +from typing import Optional + +import click +import rdflib +from rdflib import BNode, Literal +from rdflib.namespace import ClosedNamespace, FOAF, Namespace, RDF, RDFS, XSD + +import bioregistry +from bioregistry import read_collections, read_metaregistry, read_registry +from bioregistry.constants import DOCS_DATA + +bioregistry_collection = Namespace('https://bioregistry.io/collection/') +bioregistry_resource = Namespace('https://bioregistry.io/registry/') +bioregistry_metaresource = Namespace('https://bioregistry.io/metaregistry/') +bioregistry_schema = ClosedNamespace( + 'https://bioregistry.io/schema/#', + terms=[ + 'contains', 'example', 'isRegistry', 'isProvider', + 'isResolver', 'hasAuthor', 'provider_formatter', 'resolver_formatter', + 'pattern', 'email', 'download', 'part_of', 'provides', 'deprecated', + 'hasMetaresource', 'hasMetaidentifier', 'mapping', 'hasMapping', + 'resource', 'metaresource', 'collection', + ], +) +orcid = Namespace('https://orcid.org/') + + +@click.command() +def export_rdf(): + """Export RDF.""" + graph = get_full_rdf() + graph.serialize(os.path.join(DOCS_DATA, 'bioregistry.ttl'), format='turtle') + graph.serialize(os.path.join(DOCS_DATA, 'bioregistry.nt'), format='nt') + graph.serialize(os.path.join(DOCS_DATA, 'bioregistry.xml'), format='xml') + + +def _bind(graph: rdflib.Graph) -> None: + graph.namespace_manager.bind('bioregistry.resource', bioregistry_resource) + graph.namespace_manager.bind('bioregistry.metaresource', bioregistry_metaresource) + graph.namespace_manager.bind('bioregistry.collection', bioregistry_collection) + graph.namespace_manager.bind('bioregistry.schema', bioregistry_schema) + graph.namespace_manager.bind('orcid', orcid) + graph.namespace_manager.bind('foaf', FOAF) + + +def get_full_rdf() -> rdflib.Graph: + """Get a combine RDF graph representing the Bioregistry using :mod:`rdflib`.""" + graph = rdflib.Graph() + _bind(graph) + _add_metaresources(graph) + _add_collections(graph) + _add_resources(graph) + + return graph + + +def get_resource_rdf(prefix: str) -> rdflib.Graph: + """Get the RDF for a single resource.""" + graph = rdflib.Graph() + _bind(graph) + data = bioregistry.get(prefix) + if data is None: + raise KeyError + _add_resource(graph, prefix, data) + return graph + + +def get_resource_rdf_str(prefix: str, fmt: Optional[str] = None) -> str: + """Get the RDF for a single resource serialized.""" + return _graph_str(get_resource_rdf(prefix), fmt=fmt) + + +def _graph_str(graph: rdflib.Graph, fmt: Optional[str] = None) -> str: + stream = BytesIO() + graph.serialize(stream, format=fmt or 'turtle') + return stream.getvalue().decode('utf8') + + +def get_metaresource_rdf(metaprefix: str) -> rdflib.Graph: + """Get the RDF for a single metaresource.""" + graph = rdflib.Graph() + _bind(graph) + data = bioregistry.get_registry(metaprefix) + if data is None: + raise KeyError + _add_metaresource(graph, data) + return graph + + +def get_collection_rdf(identifier: str) -> rdflib.Graph: + """Get the RDF for a single collection.""" + graph = rdflib.Graph() + _bind(graph) + data = bioregistry.get_collection(identifier) + if data is None: + raise KeyError + _add_collection(graph, data) + return graph + + +def _add_metaresources(graph: rdflib.Graph) -> None: + for metaresource in read_metaregistry().values(): + _add_metaresource(graph, metaresource) + + +def _add_collections(graph: rdflib.Graph) -> None: + for collection in read_collections().values(): + _add_collection(graph, collection) + + +def _add_resources(graph: rdflib.Graph) -> None: + for prefix, data in read_registry().items(): + _add_resource(graph, prefix, data) + + +def _add_collection(graph: rdflib.Graph, data): + node = bioregistry_collection[data['identifier']] + graph.add((node, RDF['type'], bioregistry_schema['collection'])) + graph.add((node, RDFS['label'], Literal(data['name']))) + graph.add((node, RDFS['comment'], Literal(data['description']))) + + for author in data.get('authors', []): + graph.add((node, bioregistry_schema['hasAuthor'], orcid[author['orcid']])) + graph.add((orcid[author['orcid']], RDFS['label'], Literal(author['name']))) + + for resource in data['resources']: + graph.add((node, bioregistry_schema['contains'], bioregistry_resource[resource])) + return node + + +def _add_metaresource(graph: rdflib.Graph, data): + node = bioregistry_metaresource[data['prefix']] + graph.add((node, RDF['type'], bioregistry_schema['metaresource'])) + graph.add((node, RDFS['label'], Literal(data['name']))) + graph.add((node, RDFS['comment'], Literal(data['description']))) + graph.add((node, FOAF['homepage'], Literal(data['homepage']))) + graph.add((node, bioregistry_schema['example'], Literal(data['example']))) + graph.add((node, bioregistry_schema['isRegistry'], Literal(data['registry'], datatype=XSD.boolean))) + graph.add((node, bioregistry_schema['isProvider'], Literal(data['provider'], datatype=XSD.boolean))) + if data['provider']: + graph.add((node, bioregistry_schema['provider_formatter'], Literal(data['formatter']))) + graph.add((node, bioregistry_schema['isResolver'], Literal(data['resolver'], datatype=XSD.boolean))) + if data['resolver']: + graph.add((node, bioregistry_schema['resolver_formatter'], Literal(data['resolver_url']))) + return node + + +def _add_resource(graph: rdflib.Graph, prefix, data): + node = bioregistry_resource[prefix] + graph.add((node, RDF['type'], bioregistry_schema['resource'])) + graph.add((node, RDFS['label'], Literal(bioregistry.get_name(prefix)))) + graph.add((node, RDFS['comment'], Literal(bioregistry.get_description(prefix)))) + graph.add((node, FOAF['homepage'], Literal(bioregistry.get_homepage(prefix)))) + + for key, func in [ + ('pattern', bioregistry.get_pattern), + ('provider_formatter', bioregistry.get_format), + ('example', bioregistry.get_example), + ('email', bioregistry.get_email), + ]: + value = func(prefix) + if value is not None: + graph.add((node, bioregistry_schema[key], Literal(value))) + + download = data.get('download') + if download: + graph.add((node, bioregistry_schema['download'], Literal(download))) + + part_of = data.get('part_of') + if part_of: + graph.add((node, bioregistry_schema['part_of'], bioregistry_resource[part_of])) + + provides = data.get('provides') + if provides: + graph.add((node, bioregistry_schema['provides'], bioregistry_resource[provides])) + + graph.add(( + node, + bioregistry_schema['deprecated'], + Literal(bioregistry.is_deprecated(prefix), datatype=XSD.boolean), + )) + + mappings = bioregistry.get_mappings(prefix) + for metaprefix, metaidentifier in (mappings or {}).items(): + mapping_node = BNode() + graph.add((node, bioregistry_schema['hasMapping'], mapping_node)) + graph.add((mapping_node, RDF['type'], bioregistry_schema['mapping'])) + graph.add((mapping_node, bioregistry_schema['hasMetaresource'], bioregistry_metaresource[metaprefix])) + graph.add((mapping_node, bioregistry_schema['hasMetaidentifier'], Literal(metaidentifier))) + + return node + + +if __name__ == '__main__': + export_rdf() diff --git a/src/bioregistry/export/tsv_export.py b/src/bioregistry/export/tsv_export.py new file mode 100644 index 000000000..2b404110d --- /dev/null +++ b/src/bioregistry/export/tsv_export.py @@ -0,0 +1,128 @@ +# -*- coding: utf-8 -*- + +"""Export components of the bioregistry to TSV.""" + +import csv +import os + +import click + +from bioregistry import read_collections, read_metaregistry +from .. import resolve +from ..constants import DOCS_DATA +from ..utils import read_registry + + +@click.command() +def export_tsv(): + """Export TSV.""" + with open(os.path.join(DOCS_DATA, 'collections.tsv'), 'w') as file: + writer = csv.writer(file, delimiter='\t') + writer.writerow(COLLECTIONS_HEADER) + writer.writerows(get_collections_rows()) + + with open(os.path.join(DOCS_DATA, 'metaregistry.tsv'), 'w') as file: + writer = csv.writer(file, delimiter='\t') + writer.writerow(METAREGISTRY_HEADER) + writer.writerows(get_metaregistry_rows()) + + with open(os.path.join(DOCS_DATA, 'registry.tsv'), 'w') as file: + writer = csv.writer(file, delimiter='\t') + writer.writerow(REGISTRY_HEADER) + writer.writerows(get_registry_rows()) + + +COLLECTIONS_HEADER = ['identifier', 'name', 'description', 'resources', 'author_names', 'author_orcids'] +METAREGISTRY_HEADER = [ + 'metaprefix', + 'name', + 'homepage', + 'description', + 'download', + 'example', + 'provider', + 'registry', + 'resolver', + 'provider_formatter', + 'resolver_formatter', +] +METAPREFIXES = [ + k + for k in sorted(read_metaregistry()) + if k not in {'bioregistry', 'biolink', 'ncbi', 'fairsharing', 'go'} +] +REGISTRY_HEADER = [ + 'identifier', 'name', 'homepage', 'description', 'pattern', + 'example', 'email', 'formatter', 'download', 'synonyms', + 'deprecated', *METAPREFIXES, 'part_of', 'provides', + # 'type', +] + + +def get_collections_rows(): + """Get a dataframe of all collections.""" + rows = [] + for identifier, data in read_collections().items(): + rows.append(( + identifier, + data['name'], + data['description'], + '|'.join(data['resources']), + '|'.join(e['name'] for e in data['authors']), + '|'.join(e['orcid'] for e in data['authors']), + )) + return rows + + +def get_metaregistry_rows(): + """Get a dataframe of all metaresources.""" + rows = [] + for metaprefix, data in read_metaregistry().items(): + rows.append(( + metaprefix, + data['name'], + data['homepage'], + data['description'], + data.get('download'), + data['example'], + data['provider'], + data['registry'], + data['resolver'], + data.get('formatter'), + data.get('resolver_url'), + )) + return rows + + +def get_registry_rows(): + """Get a dataframe of all resources.""" + rows = [] + for prefix, data in read_registry().items(): + mappings = resolve.get_mappings(prefix) + rows.append(( + prefix, + resolve.get_name(prefix), + resolve.get_homepage(prefix), + resolve.get_description(prefix), + resolve.get_pattern(prefix), + resolve.get_example(prefix), + resolve.get_email(prefix), + resolve.get_format(prefix), + data.get('download'), + '|'.join(data.get('synonyms', [])), + resolve.is_deprecated(prefix), + *[ + mappings.get(metaprefix) + for metaprefix in METAPREFIXES + ], + # '|'.join(data.get('appears_in', [])), + data.get('part_of'), + data.get('provides'), + # data.get('type'), + # TODO could add more, especially mappings + )) + return rows + + +if __name__ == '__main__': + export_tsv() diff --git a/src/bioregistry/export/yaml_export.py b/src/bioregistry/export/yaml_export.py new file mode 100644 index 000000000..b96565477 --- /dev/null +++ b/src/bioregistry/export/yaml_export.py @@ -0,0 +1,32 @@ +# -*- coding: utf-8 -*- + +"""Export components of the bioregistry to YAML.""" + +import os + +import click +import yaml + +from ..constants import DOCS_DATA +from ..utils import read_collections, read_metaregistry, read_registry + + +@click.command() +def export_yaml(): + """Export the registry as YAML.""" + with open(os.path.join(DOCS_DATA, 'registry.yml'), 'w') as file: + yaml.dump(stream=file, data=[ + { + 'prefix': prefix, + **data, + } + for prefix, data in read_registry().items() + ]) + with open(os.path.join(DOCS_DATA, 'metaregistry.yml'), 'w') as file: + yaml.dump(stream=file, data=read_metaregistry()) + with open(os.path.join(DOCS_DATA, 'collections.yml'), 'w') as file: + yaml.dump(stream=file, data=read_collections()) + + +if __name__ == '__main__': + export_yaml()