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Pulling the latest docker images, e1513f80a4f3, and starting it using
docker run -i --detach --name bioregistry -p 8766:8766 biopragmatics/bioregistry:latest
Gives the following error on startup:
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "/usr/local/lib/python3.11/site-packages/bioregistry/__main__.py", line 8, in <module>
main()
File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1157, in __call__
return self.main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1688, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/bioregistry/app/cli.py", line 53, in web
from .impl import get_app
File "/usr/local/lib/python3.11/site-packages/bioregistry/app/impl.py", line 9, in <module>
from curies.mapping_service import MappingServiceGraph, MappingServiceSPARQLProcessor
File "/usr/local/lib/python3.11/site-packages/curies/mapping_service/__init__.py", line 104, in <module>
from .api import (
File "/usr/local/lib/python3.11/site-packages/curies/mapping_service/api.py", line 13, in <module>
from .utils import CONTENT_TYPE_TO_RDFLIB_FORMAT, handle_header
File "/usr/local/lib/python3.11/site-packages/curies/mapping_service/utils.py", line 11, in <module>
from defusedxml import ElementTree
ModuleNotFoundError: No module named 'defusedxml'
The text was updated successfully, but these errors were encountered:
kkaris
changed the title
Latest docker image e1513f80a4f3 fails to start due to ModuleNotFoundError
Latest docker image, e1513f80a4f3, fails to start due to ModuleNotFoundErrorDec 22, 2024
Pulling the latest docker images, e1513f80a4f3, and starting it using
Gives the following error on startup:
The text was updated successfully, but these errors were encountered: