From 3a17b651399d746b3c3c18ce1e2e0fc53c8e2073 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Thu, 2 Nov 2023 09:42:38 +0100 Subject: [PATCH 1/2] Update OIO --- src/bioregistry/data/bioregistry.json | 16 ++++++++++++++-- 1 file changed, 14 insertions(+), 2 deletions(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index a03fc9360..b56e126da 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -69479,6 +69479,12 @@ "prefix": "oboformat", "uri_format": "http://www.geneontology.org/formats/oboInOwl#$1" }, + "contact": { + "email": "sjcarbon@lbl.gov", + "github": "kltm", + "name": "Seth Carbon", + "orcid": "0000-0001-8244-1536" + }, "contributor": { "email": "cthoyt@gmail.com", "github": "cthoyt", @@ -69486,9 +69492,14 @@ "orcid": "0000-0003-4423-4370" }, "description": "This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties", - "download_obo": "https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.obo", - "download_owl": "https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.owl", + "download_obo": "http://www.geneontology.org/formats/oboInOwl.obo", + "download_owl": "http://www.geneontology.org/formats/oboInOwl.owl", "example": "hasDbXref", + "example_extras": [ + "hasExactSynonym", + "hasBroadSynonym", + "hasNarrowSynonym" + ], "fairsharing": { "abbreviation": "OBO Format", "description": "The first part of this specification describes the syntax and structure of OBO Format using BNF. This states how strings of characters in OBOF Files are parsed into abstract OBO documents, and describes constraints on the structure of these documents. The second part of this specification describes the semantics of an OBO document via a mapping to OWL2-DL and community metadata vocabularies.", @@ -69512,6 +69523,7 @@ "download": "https://raw.githubusercontent.com/geneontology/go-ontology/master/contrib/oboInOwl", "prefix": "oboinowl" }, + "pattern": "^\\w+$", "preferred_prefix": "oboInOwl", "repository": "https://github.com/geneontology/go-ontology", "synonyms": [ From ff6cad08e6c193b15fdf0bcc775add9284c0a0ad Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Thu, 16 Nov 2023 11:25:56 +0100 Subject: [PATCH 2/2] Update bioregistry.json --- src/bioregistry/data/bioregistry.json | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index b56e126da..c059eae19 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -69480,10 +69480,10 @@ "uri_format": "http://www.geneontology.org/formats/oboInOwl#$1" }, "contact": { - "email": "sjcarbon@lbl.gov", - "github": "kltm", - "name": "Seth Carbon", - "orcid": "0000-0001-8244-1536" + "email": "cjmungall@lbl.gov", + "github": "cmungall", + "name": "Chris Mungall", + "orcid": "0000-0002-6601-2165" }, "contributor": { "email": "cthoyt@gmail.com", @@ -69525,6 +69525,10 @@ }, "pattern": "^\\w+$", "preferred_prefix": "oboInOwl", + "references": [ + "https://github.com/biopragmatics/bioregistry/pull/973", + "https://github.com/geneontology/go-site/issues/2157" + ], "repository": "https://github.com/geneontology/go-ontology", "synonyms": [ "oboformat",